ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
menu 
| Clone Name | bags8k16 |
|---|---|
| Clone Library Name | barley_pub |
>ALR1_STAAW (P63481) Alanine racemase 1 (EC 5.1.1.1)| Length = 382 Score = 30.8 bits (68), Expect = 1.7 Identities = 16/50 (32%), Positives = 26/50 (52%) Frame = -2 Query: 152 LHGVTWDIARVQRKNQVGSQEMGKPANXRAALFXPSSNWLWNAVKKREGE 3 +HG+T A++ + ++++ K R AL PS WL A+K GE Sbjct: 75 MHGIT---AKILVLGVLPAKDIDKAIQHRVALTVPSKQWLKEAIKNISGE 121
>ALR1_STAAU (Q9ZAH5) Alanine racemase 1 (EC 5.1.1.1)| Length = 382 Score = 30.8 bits (68), Expect = 1.7 Identities = 16/50 (32%), Positives = 26/50 (52%) Frame = -2 Query: 152 LHGVTWDIARVQRKNQVGSQEMGKPANXRAALFXPSSNWLWNAVKKREGE 3 +HG+T A++ + ++++ K R AL PS WL A+K GE Sbjct: 75 MHGIT---AKILVLGVLPAKDIDKAIQHRVALTVPSKQWLKEAIKNISGE 121
>ALR1_STAAS (Q6G7N9) Alanine racemase 1 (EC 5.1.1.1)| Length = 382 Score = 30.8 bits (68), Expect = 1.7 Identities = 16/50 (32%), Positives = 26/50 (52%) Frame = -2 Query: 152 LHGVTWDIARVQRKNQVGSQEMGKPANXRAALFXPSSNWLWNAVKKREGE 3 +HG+T A++ + ++++ K R AL PS WL A+K GE Sbjct: 75 MHGIT---AKILVLGVLPAKDIDKAIQHRVALTVPSKQWLKEAIKNISGE 121
>ALR1_STAAR (Q6GF03) Alanine racemase 1 (EC 5.1.1.1)| Length = 382 Score = 30.8 bits (68), Expect = 1.7 Identities = 16/50 (32%), Positives = 26/50 (52%) Frame = -2 Query: 152 LHGVTWDIARVQRKNQVGSQEMGKPANXRAALFXPSSNWLWNAVKKREGE 3 +HG+T A++ + ++++ K R AL PS WL A+K GE Sbjct: 75 MHGIT---AKILVLGVLPAKDIDKAIQHRVALTVPSKQWLKEAIKNISGE 121
>ALR1_STAAN (P63480) Alanine racemase 1 (EC 5.1.1.1)| Length = 382 Score = 30.8 bits (68), Expect = 1.7 Identities = 16/50 (32%), Positives = 26/50 (52%) Frame = -2 Query: 152 LHGVTWDIARVQRKNQVGSQEMGKPANXRAALFXPSSNWLWNAVKKREGE 3 +HG+T A++ + ++++ K R AL PS WL A+K GE Sbjct: 75 MHGIT---AKILVLGVLPAKDIDKAIQHRVALTVPSKQWLKEAIKNISGE 121
>ALR1_STAAM (P63479) Alanine racemase 1 (EC 5.1.1.1)| Length = 382 Score = 30.8 bits (68), Expect = 1.7 Identities = 16/50 (32%), Positives = 26/50 (52%) Frame = -2 Query: 152 LHGVTWDIARVQRKNQVGSQEMGKPANXRAALFXPSSNWLWNAVKKREGE 3 +HG+T A++ + ++++ K R AL PS WL A+K GE Sbjct: 75 MHGIT---AKILVLGVLPAKDIDKAIQHRVALTVPSKQWLKEAIKNISGE 121
>ALR1_STAAC (Q5HED1) Alanine racemase 1 (EC 5.1.1.1)| Length = 382 Score = 30.8 bits (68), Expect = 1.7 Identities = 16/50 (32%), Positives = 26/50 (52%) Frame = -2 Query: 152 LHGVTWDIARVQRKNQVGSQEMGKPANXRAALFXPSSNWLWNAVKKREGE 3 +HG+T A++ + ++++ K R AL PS WL A+K GE Sbjct: 75 MHGIT---AKILVLGVLPAKDIDKAIQHRVALTVPSKQWLKEAIKNISGE 121
>DHSB_CYACA (P48933) Succinate dehydrogenase [ubiquinone] iron-sulfur protein| (EC 1.3.5.1) (IP) Length = 262 Score = 30.4 bits (67), Expect = 2.2 Identities = 14/38 (36%), Positives = 23/38 (60%), Gaps = 2/38 (5%) Frame = -3 Query: 451 FLNSRNKTNLFYISVWEWDHTYNI*PAYSSYIIS--NC 344 FLN + ++L I ++ WD + P YS+Y++S NC Sbjct: 11 FLNLKTLSDLKLIKIFRWDSSEKKDPWYSTYVVSLKNC 48
>RNZ_METAC (Q8TLK5) Ribonuclease Z (EC 3.1.26.11) (RNase Z) (tRNase Z) (tRNA 3| endonuclease) Length = 305 Score = 30.0 bits (66), Expect = 2.9 Identities = 19/51 (37%), Positives = 25/51 (49%), Gaps = 1/51 (1%) Frame = +1 Query: 259 GDDVAGRGVTCLHIIL*KMTPSLGYSFVHNWR*CRMNRQ-AICCMCDPIPI 408 GD V G G + TPSLGY+ + N R R NR+ A+ P P+ Sbjct: 121 GDVVEGEGYVVRALETEHSTPSLGYALIENPRPGRFNREKAVALGVPPGPL 171
>RNZ_METMA (Q8Q032) Ribonuclease Z (EC 3.1.26.11) (RNase Z) (tRNase Z) (tRNA 3| endonuclease) Length = 305 Score = 29.3 bits (64), Expect = 4.9 Identities = 16/39 (41%), Positives = 20/39 (51%) Frame = +1 Query: 259 GDDVAGRGVTCLHIIL*KMTPSLGYSFVHNWR*CRMNRQ 375 GD V G+ + TPSLGYS + N R R NR+ Sbjct: 121 GDIVEGKNYVVRALKTEHSTPSLGYSLIENPRPGRFNRE 159
>VU4_HHV6U (Q01351) U4 protein| Length = 535 Score = 28.5 bits (62), Expect = 8.4 Identities = 13/41 (31%), Positives = 19/41 (46%) Frame = +3 Query: 9 LPLFDSIPKPIAAWXKQGSPXISRFPHLLAAHLILSLNSGY 131 L LFD +P P + SP H L+ H+ ++ S Y Sbjct: 174 LTLFDILPNPKEIYGDAASPTSVLLKHFLSDHIFVAYASSY 214
>COLQ_RAT (O35167) Acetylcholinesterase collagenic tail peptide precursor| (AChE Q subunit) (Acetylcholinesterase-associated collagen) Length = 458 Score = 28.5 bits (62), Expect = 8.4 Identities = 19/69 (27%), Positives = 27/69 (39%), Gaps = 3/69 (4%) Frame = +1 Query: 88 ISWLP---T*FFR*TLAISHVTPWRSLKSCRHRSSQRRKQGRKDLDDSL*FCMVCHAIYV 258 + WLP T F+ + + H W + + G D+ D C+ CH Y Sbjct: 354 LGWLPIQLTPFY--PVGLHHKAAWHLCGDGVLQPGEECDDGNPDVSDG---CIDCHRAYC 408 Query: 259 GDDVAGRGV 285 GD RGV Sbjct: 409 GDGYRHRGV 417 Database: uniprot_sprot.fasta Posted date: May 25, 2006 5:36 PM Number of letters in database: 80,573,946 Number of sequences in database: 219,361 Lambda K H 0.318 0.135 0.401 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 73,276,700 Number of Sequences: 219361 Number of extensions: 1594470 Number of successful extensions: 3345 Number of sequences better than 10.0: 12 Number of HSP's better than 10.0 without gapping: 3247 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 3345 length of database: 80,573,946 effective HSP length: 102 effective length of database: 58,199,124 effective search space used: 2851757076 frameshift window, decay const: 50, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits)
