ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日:2016年5月1日

Clone Information

BLAST Search Result

Clone Name bags8k08
Clone Library Name barley_pub

No. Definition Score
(bits)
E
Value
1MURC_ENTFA (Q833N6) UDP-N-acetylmuramate--L-alanine ligase (EC 6... 30 2.0
2SYI_TETTH (P36422) Isoleucyl-tRNA synthetase (EC 6.1.1.5) (Isole... 29 4.5

>MURC_ENTFA (Q833N6) UDP-N-acetylmuramate--L-alanine ligase (EC 6.3.2.8)|
           (UDP-N-acetylmuramoyl-L-alanine synthetase)
          Length = 445

 Score = 30.4 bits (67), Expect = 2.0
 Identities = 12/45 (26%), Positives = 25/45 (55%)
 Frame = +2

Query: 143 YFRSMKSDNPSFYYAIQLDENDKAANVFWADARSIFDYHYFSDVI 277
           Y R ++S+ P +YY +  +++ +A N+      S FD ++  D +
Sbjct: 213 YLRQLESEVPVYYYGVSEEDDIQARNIQRTTEGSSFDVYHKDDFV 257



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>SYI_TETTH (P36422) Isoleucyl-tRNA synthetase (EC 6.1.1.5) (Isoleucine--tRNA|
           ligase) (IleRS)
          Length = 1081

 Score = 29.3 bits (64), Expect = 4.5
 Identities = 16/52 (30%), Positives = 25/52 (48%)
 Frame = -1

Query: 174 DGLSLFILRK*SVRALKSSAFISFVDLVRR*XLVPWRNAYGISIXQIEPWTI 19
           D + L+++    VRA + S     V  V++   +PW NAY   I  I  W +
Sbjct: 628 DAIRLYMINSPLVRAEEMSFKSEGVFAVKKDIFLPWYNAYKFLIQSITRWEL 679


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.318    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 60,613,070
Number of Sequences: 219361
Number of extensions: 1138146
Number of successful extensions: 2823
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 2780
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 2822
length of database: 80,573,946
effective HSP length: 102
effective length of database: 58,199,124
effective search space used: 2618960580
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
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