>RPF1_XENLA (Q8AVP1) Ribosome production factor 1 (Ribosome biogenesis protein|
           RPF1) (Brix domain-containing protein 5)
          Length = 343

 Score = 79.7 bits (195), Expect(2) = 2e-15
 Identities = 38/97 (39%), Positives = 60/97 (61%)
 Frame = +1

Query: 181 DEFNAVLKQVVTPKVLITTCRFNSGRGPAFIKELMQXIPNAQYVNRGTYDLKKIVEYANN 360
           DEF     +  TPK+LITT     GR   F ++L   IPN+    R    LKKI+    +
Sbjct: 124 DEFAPYFNKQTTPKILITTSDRPRGRSVRFTEQLSSIIPNSDVYYRRGLALKKIIPQCVS 183

Query: 361 REFTSVMVVHTNRREPDALLIINLPEGPTAHFKLSKL 471
           R++T ++V++ +R+ P+ L++ +LP+GPTAHFK+S +
Sbjct: 184 RDYTDLLVINEDRKVPNGLVLCHLPDGPTAHFKISNV 220



 Score = 21.2 bits (43), Expect(2) = 2e-15
 Identities = 11/29 (37%), Positives = 16/29 (55%)
 Frame = +2

Query: 77  PEKQVPRTIE*HKGSPTXTVCRPDDQGAV 163
           P K VP+TIE  +     TV   D++ A+
Sbjct: 91  PPKPVPKTIENQRVYDETTVDPADEEVAL 119

>RPF1_BRARE (Q6IQU6) Ribosome production factor 1 (Ribosome biogenesis protein|
           RPF1) (Brix domain-containing protein 5)
          Length = 330

 Score = 77.8 bits (190), Expect(2) = 3e-15
 Identities = 39/97 (40%), Positives = 60/97 (61%)
 Frame = +1

Query: 181 DEFNAVLKQVVTPKVLITTCRFNSGRGPAFIKELMQXIPNAQYVNRGTYDLKKIVEYANN 360
           DEF+A   ++  PKVLITT     GR   F  +L   IP+A    R    LKK++    +
Sbjct: 111 DEFSAYFNRLTNPKVLITTSDRPRGRTVRFCDQLATVIPHAYVYYRRGLALKKVIPQCIS 170

Query: 361 REFTSVMVVHTNRREPDALLIINLPEGPTAHFKLSKL 471
           R FT +MV++ +R+ P+ +++ +LP+GPTAHFK+S +
Sbjct: 171 RGFTYLMVINEDRKVPNGMVLCHLPDGPTAHFKVSSV 207



 Score = 22.3 bits (46), Expect(2) = 3e-15
 Identities = 12/32 (37%), Positives = 17/32 (53%)
 Frame = +2

Query: 77  PEKQVPRTIE*HKGSPTXTVCRPDDQGAVCRG 172
           P K+VP+TIE  +     TV   D++ A   G
Sbjct: 78  PPKEVPKTIENQRIYDETTVNPEDEEVAFDEG 109

>YUY1_CAEEL (P54073) Hypothetical protein F44G4.1 in chromosome II|
          Length = 384

 Score = 76.3 bits (186), Expect(2) = 7e-15
 Identities = 39/97 (40%), Positives = 58/97 (59%)
 Frame = +1

Query: 181 DEFNAVLKQVVTPKVLITTCRFNSGRGPAFIKELMQXIPNAQYVNRGTYDLKKIVEYANN 360
           DEF     +  +PKV+IT           F  EL + IPN++   R    LK I+E A  
Sbjct: 165 DEFAPYFNRETSPKVMITMTPKAKITTFKFCFELQKCIPNSEIFTRKNVLLKTIIEQAKE 224

Query: 361 REFTSVMVVHTNRREPDALLIINLPEGPTAHFKLSKL 471
           REFT ++VVH +R++P+ ++  +LPEGPTA+FK++ L
Sbjct: 225 REFTDLLVVHEDRKKPNGIIFCHLPEGPTAYFKINSL 261



 Score = 22.7 bits (47), Expect(2) = 7e-15
 Identities = 10/26 (38%), Positives = 15/26 (57%)
 Frame = +2

Query: 77  PEKQVPRTIE*HKGSPTXTVCRPDDQ 154
           P+K+VP+TIE  +      V   DD+
Sbjct: 132 PQKEVPKTIESMREYDATMVNEEDDE 157

>RPF1_DROME (Q9VKB4) Probable ribosome production factor 1 (Ribosome biogenesis|
           protein RPF1)
          Length = 394

 Score = 76.6 bits (187), Expect = 3e-14
 Identities = 41/97 (42%), Positives = 59/97 (60%)
 Frame = +1

Query: 181 DEFNAVLKQVVTPKVLITTCRFNSGRGPAFIKELMQXIPNAQYVNRGTYDLKKIVEYANN 360
           D+F++  ++   PKVLIT       +   F  EL +  PNA    R    +KKI + A  
Sbjct: 173 DDFSSYFERSYEPKVLITFADNPVTKTRKFGLELSRIFPNALVKIRNKSSVKKICKSAER 232

Query: 361 REFTSVMVVHTNRREPDALLIINLPEGPTAHFKLSKL 471
            EFT V++V+ +RR+P+ LL+I+LP GPTAHFKLS +
Sbjct: 233 EEFTDVVIVNEDRRKPNGLLVIHLPNGPTAHFKLSNV 269

>YHPK_CAEEL (O62518) Hypothetical protein ZK795.3 in chromosome IV|
          Length = 292

 Score = 75.5 bits (184), Expect = 7e-14
 Identities = 35/86 (40%), Positives = 55/86 (63%)
 Frame = +1

Query: 217 PKVLITTCRFNSGRGPAFIKELMQXIPNAQYVNRGTYDLKKIVEYANNREFTSVMVVHTN 396
           PK++ITT R  S R   F KE+    PNAQ +NRG YD+K++V+ +  ++ T +++    
Sbjct: 78  PKIVITTSRDPSSRLKMFAKEMKLIFPNAQRINRGHYDVKQVVQASKAQDSTDLIIFTET 137

Query: 397 RREPDALLIINLPEGPTAHFKLSKLV 474
           R  PD +L+ +LP GPTA F ++ +V
Sbjct: 138 RGNPDGMLVCHLPFGPTAFFSMANVV 163

>RPF1_PONPY (Q5R631) Ribosome production factor 1 (Ribosome biogenesis protein|
           RPF1) (Brix domain-containing protein 5)
          Length = 349

 Score = 74.7 bits (182), Expect = 1e-13
 Identities = 37/97 (38%), Positives = 58/97 (59%)
 Frame = +1

Query: 181 DEFNAVLKQVVTPKVLITTCRFNSGRGPAFIKELMQXIPNAQYVNRGTYDLKKIVEYANN 360
           DEF +   +  +PK+LITT     GR     ++L   IPN+    R    LKKI+     
Sbjct: 130 DEFASYFNKQTSPKILITTSDRPHGRTVRLCEQLSTVIPNSHVYYRRGLALKKIIPQCIA 189

Query: 361 REFTSVMVVHTNRREPDALLIINLPEGPTAHFKLSKL 471
           R+FT ++V++ +R+ P+ L++ +LP GPTAHFK+S +
Sbjct: 190 RDFTDLIVINEDRKTPNGLILSHLPNGPTAHFKMSSV 226

>RPF1_HUMAN (Q9H9Y2) Ribosome production factor 1 (Ribosome biogenesis protein|
           RPF1) (Brix domain-containing protein 5)
          Length = 349

 Score = 74.7 bits (182), Expect = 1e-13
 Identities = 37/97 (38%), Positives = 58/97 (59%)
 Frame = +1

Query: 181 DEFNAVLKQVVTPKVLITTCRFNSGRGPAFIKELMQXIPNAQYVNRGTYDLKKIVEYANN 360
           DEF +   +  +PK+LITT     GR     ++L   IPN+    R    LKKI+     
Sbjct: 130 DEFASYFNKQTSPKILITTSDRPHGRTVRLCEQLSTVIPNSHVYYRRGLALKKIIPQCIA 189

Query: 361 REFTSVMVVHTNRREPDALLIINLPEGPTAHFKLSKL 471
           R+FT ++V++ +R+ P+ L++ +LP GPTAHFK+S +
Sbjct: 190 RDFTDLIVINEDRKTPNGLILSHLPNGPTAHFKMSSV 226

>RPF1_RAT (Q5RJS9) Ribosome production factor 1 (Ribosome biogenesis protein|
           RPF1) (Brix domain-containing protein 5)
          Length = 345

 Score = 72.8 bits (177), Expect = 4e-13
 Identities = 36/97 (37%), Positives = 58/97 (59%)
 Frame = +1

Query: 181 DEFNAVLKQVVTPKVLITTCRFNSGRGPAFIKELMQXIPNAQYVNRGTYDLKKIVEYANN 360
           DEF +   +  +PK+LITT     GR     ++L   IP++    R    LKKI+     
Sbjct: 130 DEFASYFNRQTSPKILITTSDRPHGRTVRLCEQLSTVIPDSHVYYRRGLALKKIIPQCIA 189

Query: 361 REFTSVMVVHTNRREPDALLIINLPEGPTAHFKLSKL 471
           R+FT ++V++ +R+ P+ L++ +LP GPTAHFK+S +
Sbjct: 190 RDFTDLIVINEDRKTPNGLILSHLPNGPTAHFKMSSV 226

>RPF1_MOUSE (Q7TND5) Ribosome production factor 1 (Ribosome biogenesis protein|
           RPF1) (Brix domain-containing protein 5)
          Length = 349

 Score = 72.8 bits (177), Expect = 4e-13
 Identities = 36/97 (37%), Positives = 58/97 (59%)
 Frame = +1

Query: 181 DEFNAVLKQVVTPKVLITTCRFNSGRGPAFIKELMQXIPNAQYVNRGTYDLKKIVEYANN 360
           DEF +   +  +PK+LITT     GR     ++L   IP++    R    LKKI+     
Sbjct: 130 DEFASYFNRQTSPKILITTSDRPHGRTVRLCEQLSTVIPDSHVYYRRGLALKKIIPQCIA 189

Query: 361 REFTSVMVVHTNRREPDALLIINLPEGPTAHFKLSKL 471
           R+FT ++V++ +R+ P+ L++ +LP GPTAHFK+S +
Sbjct: 190 RDFTDLIVINEDRKTPNGLILSHLPNGPTAHFKMSSV 226

>IMP4_ASHGO (Q755T8) U3 small nucleolar ribonucleoprotein protein IMP4 (U3|
           snoRNP protein IMP4)
          Length = 283

 Score = 70.5 bits (171), Expect = 2e-12
 Identities = 39/98 (39%), Positives = 56/98 (57%)
 Frame = +1

Query: 181 DEFNAVLKQVVTPKVLITTCRFNSGRGPAFIKELMQXIPNAQYVNRGTYDLKKIVEYANN 360
           DE++A L  +V PKV++TT R  S R   F KE+    P +  +NRG Y +K +V+    
Sbjct: 68  DEYSA-LSGIVDPKVIVTTSRDPSTRLSQFAKEVKLLFPTSVRLNRGNYIMKNLVDACQK 126

Query: 361 REFTSVMVVHTNRREPDALLIINLPEGPTAHFKLSKLV 474
              T ++V+H +R  P AL I + P GPTA F L  +V
Sbjct: 127 SGTTDLVVLHEHRGVPTALTISHFPHGPTASFSLHNVV 164

>IMP4_SCHPO (O13823) U3 small nucleolar ribonucleoprotein protein imp4 (U3|
           snoRNP protein imp4)
          Length = 289

 Score = 69.7 bits (169), Expect = 4e-12
 Identities = 36/86 (41%), Positives = 51/86 (59%)
 Frame = +1

Query: 217 PKVLITTCRFNSGRGPAFIKELMQXIPNAQYVNRGTYDLKKIVEYANNREFTSVMVVHTN 396
           PKVL+TT R  S R   F KE+   IPN+  +NRG   +  +VE A   + T ++++H +
Sbjct: 84  PKVLVTTSREPSSRLAQFAKEVRLLIPNSYRLNRGNIVVGSLVEAARANDITDIVILHEH 143

Query: 397 RREPDALLIINLPEGPTAHFKLSKLV 474
           R  PD L+I +LP GPT  F L  +V
Sbjct: 144 RGIPDGLVISHLPYGPTLSFSLHNVV 169

>IMP4_RAT (Q5PQR5) U3 small nucleolar ribonucleoprotein protein IMP4 (U3|
           snoRNP protein IMP4)
          Length = 291

 Score = 68.2 bits (165), Expect = 1e-11
 Identities = 37/89 (41%), Positives = 51/89 (57%)
 Frame = +1

Query: 208 VVTPKVLITTCRFNSGRGPAFIKELMQXIPNAQYVNRGTYDLKKIVEYANNREFTSVMVV 387
           V  PKV+ITT R  S R   F KEL    P AQ +NRG +++  +V        T ++VV
Sbjct: 80  VEDPKVMITTSRDPSSRLKMFAKELKLVFPGAQRMNRGRHEVGALVRACKANGVTDLLVV 139

Query: 388 HTNRREPDALLIINLPEGPTAHFKLSKLV 474
           H +R  P  L++ +LP GPTA+F L  +V
Sbjct: 140 HEHRGTPVGLIVSHLPFGPTAYFTLCNVV 168

>IMP4_PONPY (Q5R947) U3 small nucleolar ribonucleoprotein protein IMP4 (U3|
           snoRNP protein IMP4)
          Length = 291

 Score = 68.2 bits (165), Expect = 1e-11
 Identities = 37/89 (41%), Positives = 51/89 (57%)
 Frame = +1

Query: 208 VVTPKVLITTCRFNSGRGPAFIKELMQXIPNAQYVNRGTYDLKKIVEYANNREFTSVMVV 387
           V  PKV+ITT R  S R   F KEL    P AQ +NRG +++  +V        T ++VV
Sbjct: 80  VEDPKVMITTSRDPSSRLKMFAKELKLVFPGAQRMNRGRHEVGALVRACKANGVTDLLVV 139

Query: 388 HTNRREPDALLIINLPEGPTAHFKLSKLV 474
           H +R  P  L++ +LP GPTA+F L  +V
Sbjct: 140 HEHRGTPVGLIVSHLPFGPTAYFTLCNVV 168

>IMP4_MOUSE (Q8VHZ7) U3 small nucleolar ribonucleoprotein protein IMP4 (U3|
           snoRNP protein IMP4)
          Length = 291

 Score = 68.2 bits (165), Expect = 1e-11
 Identities = 37/89 (41%), Positives = 51/89 (57%)
 Frame = +1

Query: 208 VVTPKVLITTCRFNSGRGPAFIKELMQXIPNAQYVNRGTYDLKKIVEYANNREFTSVMVV 387
           V  PKV+ITT R  S R   F KEL    P AQ +NRG +++  +V        T ++VV
Sbjct: 80  VEDPKVMITTSRDPSSRLKMFAKELKLVFPGAQRMNRGRHEVGALVRACKANGVTDLLVV 139

Query: 388 HTNRREPDALLIINLPEGPTAHFKLSKLV 474
           H +R  P  L++ +LP GPTA+F L  +V
Sbjct: 140 HEHRGTPVGLIVSHLPFGPTAYFTLCNVV 168

>IMP4_HUMAN (Q96G21) U3 small nucleolar ribonucleoprotein protein IMP4 (U3|
           snoRNP protein IMP4) (Brix domain-containing protein 4)
          Length = 291

 Score = 68.2 bits (165), Expect = 1e-11
 Identities = 37/89 (41%), Positives = 51/89 (57%)
 Frame = +1

Query: 208 VVTPKVLITTCRFNSGRGPAFIKELMQXIPNAQYVNRGTYDLKKIVEYANNREFTSVMVV 387
           V  PKV+ITT R  S R   F KEL    P AQ +NRG +++  +V        T ++VV
Sbjct: 80  VEDPKVMITTSRDPSSRLKMFAKELKLVFPGAQRMNRGRHEVGALVRACKANGVTDLLVV 139

Query: 388 HTNRREPDALLIINLPEGPTAHFKLSKLV 474
           H +R  P  L++ +LP GPTA+F L  +V
Sbjct: 140 HEHRGTPVGLIVSHLPFGPTAYFTLCNVV 168

>IMP4_YEAST (P53941) U3 small nucleolar ribonucleoprotein protein IMP4 (U3|
           snoRNP protein IMP4)
          Length = 290

 Score = 66.6 bits (161), Expect = 3e-11
 Identities = 34/98 (34%), Positives = 53/98 (54%)
 Frame = +1

Query: 181 DEFNAVLKQVVTPKVLITTCRFNSGRGPAFIKELMQXIPNAQYVNRGTYDLKKIVEYANN 360
           D+  A    ++ P++++TT R  S R   F KE+    PNA  +NRG Y +  +V+    
Sbjct: 74  DDEYAATSGIMDPRIIVTTSRDPSTRLSQFAKEIKLLFPNAVRLNRGNYVMPNLVDACKK 133

Query: 361 REFTSVMVVHTNRREPDALLIINLPEGPTAHFKLSKLV 474
              T ++V+H +R  P +L I + P GPTA F L  +V
Sbjct: 134 SGTTDLVVLHEHRGVPTSLTISHFPHGPTAQFSLHNVV 171

>YDS4_SCHPO (O14180) Hypothetical protein C4F8.04 in chromosome I|
          Length = 306

 Score = 64.3 bits (155), Expect = 2e-10
 Identities = 41/128 (32%), Positives = 71/128 (55%), Gaps = 3/128 (2%)
 Frame = +1

Query: 97  DDRVTQGEPDEXRLPA*RPGSCLQGN-DADEFNAVLKQV-VTPKVLITTCRFNSGRGPAF 270
           D+ + + +PDE           LQ     DEF+A   +    PK+L+TT +  S +   F
Sbjct: 62  DETIIEDKPDEE----------LQAELKDDEFSAYFSEERKVPKLLVTTSKRASRKCYDF 111

Query: 271 IKELMQXIPNAQYVNR-GTYDLKKIVEYANNREFTSVMVVHTNRREPDALLIINLPEGPT 447
             EL+   PNA++  R G  ++ +I E A  R +T ++V++ +R++ +AL +++LP GP+
Sbjct: 112 ASELLDCFPNAEFRKRTGDIEVHEIAEAAAKRGYTDLLVLNEDRKKTNALTLVHLPNGPS 171

Query: 448 AHFKLSKL 471
            +F LS L
Sbjct: 172 FYFTLSNL 179

>IMP4_CANGA (Q6FNN7) U3 small nucleolar ribonucleoprotein protein IMP4 (U3|
           snoRNP protein IMP4)
          Length = 288

 Score = 62.8 bits (151), Expect = 4e-10
 Identities = 35/98 (35%), Positives = 53/98 (54%)
 Frame = +1

Query: 181 DEFNAVLKQVVTPKVLITTCRFNSGRGPAFIKELMQXIPNAQYVNRGTYDLKKIVEYANN 360
           DE++A    +V  +V++TT R  S R   F KE+    PNA  +NRG Y +  +V     
Sbjct: 73  DEYSAS-SGIVEARVIVTTSRDPSSRLAQFAKEIKLLFPNAVRLNRGNYVMADLVSACKK 131

Query: 361 REFTSVMVVHTNRREPDALLIINLPEGPTAHFKLSKLV 474
              T ++V+H +R  P +L + + P GPTA F L  +V
Sbjct: 132 SGTTDLIVLHEHRGVPTSLTVSHFPYGPTAFFSLHNVV 169

>IMP4_YARLI (Q6C804) U3 small nucleolar ribonucleoprotein protein IMP4 (U3|
           snoRNP protein IMP4)
          Length = 283

 Score = 59.7 bits (143), Expect = 4e-09
 Identities = 33/98 (33%), Positives = 53/98 (54%)
 Frame = +1

Query: 181 DEFNAVLKQVVTPKVLITTCRFNSGRGPAFIKELMQXIPNAQYVNRGTYDLKKIVEYANN 360
           DE++A +  +  PKV++TT R  S R   F KE+    P +  +NRG   L  +V     
Sbjct: 68  DEYSA-MSGITDPKVVVTTSRDPSTRLSQFAKEVKLLFPTSIRLNRGGTVLPSLVSACKT 126

Query: 361 REFTSVMVVHTNRREPDALLIINLPEGPTAHFKLSKLV 474
              + ++V+H +R  P A+ + + P GPTA+F L  +V
Sbjct: 127 SASSDLIVLHEHRGVPTAMTVSHFPHGPTAYFSLHNVV 164

>RPF1_YEAST (P38805) Ribosome production factor 1 (Ribosome biogenesis protein|
           RPF1)
          Length = 295

 Score = 57.4 bits (137), Expect = 2e-08
 Identities = 30/87 (34%), Positives = 49/87 (56%), Gaps = 1/87 (1%)
 Frame = +1

Query: 217 PKVLITTCRFNSGRGPAFIKELMQXIPNAQYVNRGT-YDLKKIVEYANNREFTSVMVVHT 393
           PK+ +TT          F   L++ +PN  +V R   Y LK+I +    R FT +++++ 
Sbjct: 93  PKIFLTTNVNAKKSAYEFANILIEILPNVTFVKRKFGYKLKEISDICIKRNFTDIVIINE 152

Query: 394 NRREPDALLIINLPEGPTAHFKLSKLV 474
           ++++   L  I+LPEGPT +FKLS  V
Sbjct: 153 DKKKVTGLTFIHLPEGPTFYFKLSSFV 179

>IMP4_DEBHA (Q6BYD9) U3 small nucleolar ribonucleoprotein protein IMP4 (U3|
           snoRNP protein IMP4)
          Length = 284

 Score = 55.5 bits (132), Expect = 7e-08
 Identities = 33/94 (35%), Positives = 51/94 (54%)
 Frame = +1

Query: 181 DEFNAVLKQVVTPKVLITTCRFNSGRGPAFIKELMQXIPNAQYVNRGTYDLKKIVEYANN 360
           DE+ A L  +  PKVLITT R  S +   F KE+    PN+  +NRG Y +  +V     
Sbjct: 68  DEYLA-LSGISEPKVLITTSRNPSVKLLQFSKEIKLMFPNSIKLNRGNYVITDLVATCQR 126

Query: 361 REFTSVMVVHTNRREPDALLIINLPEGPTAHFKL 462
            + + ++++H +R  P +L I + P GP+  F L
Sbjct: 127 VQISDLIILHEHRGIPTSLTISHFPHGPSIIFTL 160

>BRIX_AERPE (Q9YC08) Probable brix-domain ribosomal biogenesis protein|
          Length = 197

 Score = 39.7 bits (91), Expect = 0.004
 Identities = 24/75 (32%), Positives = 39/75 (52%)
 Frame = +1

Query: 220 KVLITTCRFNSGRGPAFIKELMQXIPNAQYVNRGTYDLKKIVEYANNREFTSVMVVHTNR 399
           ++L+TT R  S R  +F+K+L   IP A    RG Y ++++   A  R    ++VV   R
Sbjct: 15  RILVTTSRRPSPRIRSFVKDLSATIPGAFRFTRGHYSMEELAREAIIRGADRIVVVGERR 74

Query: 400 REPDALLIINLPEGP 444
             P  ++ +   EGP
Sbjct: 75  GNP-GIIRVYAVEGP 88

>BRIX_PYRHO (O74104) Probable brix-domain ribosomal biogenesis protein|
          Length = 224

 Score = 33.1 bits (74), Expect = 0.37
 Identities = 17/70 (24%), Positives = 39/70 (55%)
 Frame = +1

Query: 223 VLITTCRFNSGRGPAFIKELMQXIPNAQYVNRGTYDLKKIVEYANNREFTSVMVVHTNRR 402
           +LITT    + R  +F  +L + IPN+ Y+ RG   +++++  A +R +  +++++  + 
Sbjct: 2   MLITTSHRPTRRTRSFGHDLERVIPNSLYLTRGKKTIQELLMEAYDRGYERLLIINVWKG 61

Query: 403 EPDALLIINL 432
            P  +  I +
Sbjct: 62  NPLKMTFIKV 71

>BRIX_PYRAB (Q9V200) Probable brix-domain ribosomal biogenesis protein|
          Length = 224

 Score = 31.6 bits (70), Expect = 1.1
 Identities = 16/70 (22%), Positives = 38/70 (54%)
 Frame = +1

Query: 223 VLITTCRFNSGRGPAFIKELMQXIPNAQYVNRGTYDLKKIVEYANNREFTSVMVVHTNRR 402
           +LITT    + R  +F  +L +  PN+ Y+ RG   +++++  A +R +  +++++  + 
Sbjct: 2   MLITTSHRPTRRTRSFGHDLERVFPNSLYMTRGKKTIQELLMEAYDRGYERLLIINVWKG 61

Query: 403 EPDALLIINL 432
            P  +  I +
Sbjct: 62  NPLKMTFIKV 71

>ENGA_RICCN (Q92GU2) GTP-binding protein engA|
          Length = 447

 Score = 31.2 bits (69), Expect = 1.4
 Identities = 12/39 (30%), Positives = 22/39 (56%)
 Frame = +2

Query: 296 QMLNMLIEELMTSRKLWNMQITESSLQSWLSTQIEGNLM 412
           Q +  +++  +   K+WN +IT S L  WL+   E +L+
Sbjct: 340 QNIEQVLDACLKIYKIWNKKITTSKLNEWLNFTTEAHLL 378

>BRIX_PYRKO (Q5JDM5) Probable brix-domain ribosomal biogenesis protein|
          Length = 208

 Score = 30.8 bits (68), Expect = 1.9
 Identities = 16/70 (22%), Positives = 37/70 (52%)
 Frame = +1

Query: 223 VLITTCRFNSGRGPAFIKELMQXIPNAQYVNRGTYDLKKIVEYANNREFTSVMVVHTNRR 402
           +LITT    + R  +F  +L +  PN+ Y+ RG   ++ ++  A +R +  +++++  + 
Sbjct: 2   MLITTSHRPTRRTRSFGHDLEKVFPNSLYLTRGKKTIQDLLMEAYDRGYERLLIINVWKG 61

Query: 403 EPDALLIINL 432
            P  +  I +
Sbjct: 62  NPLKMTFIKV 71

>BRIX_PYRFU (Q8TZI2) Probable brix-domain ribosomal biogenesis protein|
          Length = 223

 Score = 30.8 bits (68), Expect = 1.9
 Identities = 16/70 (22%), Positives = 38/70 (54%)
 Frame = +1

Query: 223 VLITTCRFNSGRGPAFIKELMQXIPNAQYVNRGTYDLKKIVEYANNREFTSVMVVHTNRR 402
           +LITT    + R  +F  +L +  PN+ Y+ RG   +++++  A +R +  +++++  + 
Sbjct: 2   MLITTSHRPTRRTRSFGHDLERVFPNSLYLTRGKKTIQELLMEAYDRGYERLLILNVWKG 61

Query: 403 EPDALLIINL 432
            P  +  I +
Sbjct: 62  NPLKMTFIKV 71

>BRIX_SULTO (Q975H1) Probable brix-domain ribosomal biogenesis protein|
          Length = 183

 Score = 30.4 bits (67), Expect = 2.4
 Identities = 18/62 (29%), Positives = 30/62 (48%), Gaps = 3/62 (4%)
 Frame = +1

Query: 220 KVLITTCRFNSGRGPAFIKELMQXIPNAQYVNRGTYDLKKIVE---YANNREFTSVMVVH 390
           +++ T+ R    R   F+ EL    PN+  +NRG   LK I+    Y N++    + V+ 
Sbjct: 14  EIVFTSSRDAPLRVRTFLNELTYVFPNSIKINRGRQSLKDIIAKSIYLNSKYLVIIDVIK 73

Query: 391 TN 396
            N
Sbjct: 74  GN 75

>BRIX_METKA (Q8TYC5) Probable brix-domain ribosomal biogenesis protein|
          Length = 192

 Score = 30.0 bits (66), Expect = 3.2
 Identities = 22/72 (30%), Positives = 35/72 (48%)
 Frame = +1

Query: 229 ITTCRFNSGRGPAFIKELMQXIPNAQYVNRGTYDLKKIVEYANNREFTSVMVVHTNRREP 408
           ITT +  + R  +  ++L   +P+A YV RGT +L+  V  A       +  V   +  P
Sbjct: 6   ITTSQRPARRTRSLCRDLECALPDATYVLRGTKNLRDTVLEALESGAEVLFYVTEAKGNP 65

Query: 409 DALLIINLPEGP 444
             L +I+L E P
Sbjct: 66  ARLHVIDLGEIP 77

>BRX1_SCHPO (Q9HGL6) Ribosome biogenesis protein Brix homolog|
          Length = 295

 Score = 29.6 bits (65), Expect = 4.1
 Identities = 27/107 (25%), Positives = 46/107 (42%), Gaps = 5/107 (4%)
 Frame = +1

Query: 166 QGNDADEFNAVLKQVVTPKVLITTCRFNSGRGPAFIKELMQXIPNAQYVNR-----GTYD 330
           QGN        +KQ    KVL+ + R  + R    + +L+  +P+++  ++       Y 
Sbjct: 30  QGNKHSAGFVPIKQ----KVLVLSSRGVTYRQRHLLNDLVSMMPHSKKDSKLDSKDRLYQ 85

Query: 331 LKKIVEYANNREFTSVMVVHTNRREPDALLIINLPEGPTAHFKLSKL 471
           L ++ E  N     ++    + RRE   L I   P GPT  F +  L
Sbjct: 86  LNELAELYN---CNNIFFFESRRREDLYLHIARAPNGPTVKFHVENL 129

>MCM6_SCHPO (P49731) DNA replication licensing factor mcm6 (Minichromosome|
           maintenance protein 6)
          Length = 892

 Score = 29.3 bits (64), Expect = 5.4
 Identities = 10/29 (34%), Positives = 18/29 (62%)
 Frame = +2

Query: 320 ELMTSRKLWNMQITESSLQSWLSTQIEGN 406
           EL  +++ W + I++SS Q W   +I+ N
Sbjct: 258 ELCANKRSWRLNISQSSFQDWQKVRIQEN 286

>AAP1_YEAST (P37898) Alanine/arginine aminopeptidase (EC 3.4.11.-)|
          Length = 856

 Score = 28.9 bits (63), Expect = 7.1
 Identities = 22/77 (28%), Positives = 34/77 (44%), Gaps = 1/77 (1%)
 Frame = +1

Query: 172 NDADEFNAVLKQVVTPKVLITTCRFNSGRGP-AFIKELMQXIPNAQYVNRGTYDLKKIVE 348
           N+ADE N +   +   K        +   G   FIK + Q +   +Y N  T DL   + 
Sbjct: 372 NNADEINQIFDAISYSKGSSLLRMISKWLGEETFIKGVSQYLNKFKYGNAKTGDLWDALA 431

Query: 349 YANNREFTSVMVVHTNR 399
            A+ ++  SVM + T R
Sbjct: 432 DASGKDVCSVMNIWTKR 448

>VG40_SHV21 (Q01026) Hypothetical gene 40 protein|
          Length = 450

 Score = 28.9 bits (63), Expect = 7.1
 Identities = 9/27 (33%), Positives = 17/27 (62%)
 Frame = -1

Query: 240 ACGDQYFRGYYLFKHCIELISIIPLQT 160
           AC  +Y +G YL+  C ++++ +P  T
Sbjct: 120 ACSGRYLKGAYLYSQCSQILASVPKLT 146

>ENGA_RHIME (Q92UK6) GTP-binding protein engA|
          Length = 476

 Score = 28.5 bits (62), Expect = 9.2
 Identities = 10/31 (32%), Positives = 21/31 (67%)
 Frame = +2

Query: 302 LNMLIEELMTSRKLWNMQITESSLQSWLSTQ 394
           L+ L++ ++ + K+WN +I+ + L  WL +Q
Sbjct: 365 LDRLMQAIIETDKVWNRRISTARLNRWLESQ 395


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.318    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 53,470,837
Number of Sequences: 219361
Number of extensions: 950619
Number of successful extensions: 2525
Number of sequences better than 10.0: 34
Number of HSP's better than 10.0 without gapping: 2475
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 2523
length of database: 80,573,946
effective HSP length: 103
effective length of database: 57,979,763
effective search space used: 3130907202
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)