>INVO_HUMAN (P07476) Involucrin|
          Length = 585

 Score = 33.5 bits (75), Expect = 0.47
 Identities = 21/83 (25%), Positives = 42/83 (50%), Gaps = 2/83 (2%)
 Frame = +3

Query: 156 KNEVKQWVQARKKNYPTRANVNKKLCQNQLDEQ--KKDEEAQMRRQELKEVIAKQKXXXX 329
           + ++KQ    R +    +    KKL   QLD++  K+DE+  M++++L E+  +Q+    
Sbjct: 105 EQQLKQEKTQRDQQLNKQLEEEKKLLDQQLDQELVKRDEQLGMKKEQLLELPEQQE---- 160

Query: 330 XXXXXXXXYLSDNEGQPRDPQKE 398
                   +L   EGQ + P+++
Sbjct: 161 ----GHLKHLEQQEGQLKHPEQQ 179

>ZCPW1_HUMAN (Q9H0M4) Zinc finger CW-type PWWP domain protein 1|
          Length = 494

 Score = 30.4 bits (67), Expect = 4.0
 Identities = 23/80 (28%), Positives = 36/80 (45%), Gaps = 1/80 (1%)
 Frame = +3

Query: 69  SSDSPISGDCHIDSPASGGGRKRPPIIYDKNEVKQWVQARKKNYPTRANVNKKLCQ-NQL 245
           S +SP      I SP +      P     K E K    A  KN P+R    K+  Q N+ 
Sbjct: 33  SPNSPKEETPGISSPETEARISLPKASLKKKEEK----ATMKNVPSREQEKKRKAQINKQ 88

Query: 246 DEQKKDEEAQMRRQELKEVI 305
            E+K+ E++ +   E +E++
Sbjct: 89  AEKKEKEKSSLTNAEFEEIV 108

>YAFA_SCHPO (Q09863) Hypothetical protein C29E6.10c in chromosome I|
          Length = 1085

 Score = 30.0 bits (66), Expect = 5.2
 Identities = 14/45 (31%), Positives = 26/45 (57%)
 Frame = +3

Query: 162 EVKQWVQARKKNYPTRANVNKKLCQNQLDEQKKDEEAQMRRQELK 296
           E K+  +ARKK    R    ++  Q +L+ QK++E+ + + +E K
Sbjct: 630 EAKRQEEARKKREEQRLKREQEKKQQELERQKREEKQKQKEREKK 674

>FOXQ1_HUMAN (Q9C009) Forkhead box protein Q1 (Hepatocyte nuclear factor 3|
           forkhead homolog 1) (HNF-3/forkhead-like protein 1)
           (HFH-1)
          Length = 403

 Score = 30.0 bits (66), Expect = 5.2
 Identities = 11/18 (61%), Positives = 14/18 (77%)
 Frame = +3

Query: 90  GDCHIDSPASGGGRKRPP 143
           GDC  +SPA+GGG + PP
Sbjct: 44  GDCAANSPAAGGGARDPP 61

>IMA1_RAT (P83953) Importin alpha-1 subunit (Karyopherin alpha-1 subunit)|
           (Importin alpha 5)
          Length = 538

 Score = 30.0 bits (66), Expect = 5.2
 Identities = 13/59 (22%), Positives = 32/59 (54%)
 Frame = +3

Query: 189 KKNYPTRANVNKKLCQNQLDEQKKDEEAQMRRQELKEVIAKQKXXXXXXXXXXXXYLSD 365
           K+N+  ++  NK L  +++  ++++E  Q+R+Q+ +E + K++             +SD
Sbjct: 6   KENFRLKSYKNKSLNPDEMRRRREEEGLQLRKQKREEQLFKRRNVATAEEETEEEVMSD 64

>IMA1_MOUSE (Q60960) Importin alpha-1 subunit (Karyopherin alpha-1 subunit)|
           (SRP1-beta) (RAG cohort protein 2) (Nucleoprotein
           interactor 1) (Importin alpha S1)
          Length = 538

 Score = 30.0 bits (66), Expect = 5.2
 Identities = 13/59 (22%), Positives = 32/59 (54%)
 Frame = +3

Query: 189 KKNYPTRANVNKKLCQNQLDEQKKDEEAQMRRQELKEVIAKQKXXXXXXXXXXXXYLSD 365
           K+N+  ++  NK L  +++  ++++E  Q+R+Q+ +E + K++             +SD
Sbjct: 6   KENFRLKSYKNKSLNPDEMRRRREEEGLQLRKQKREEQLFKRRNVATAEEETEEEVMSD 64

>IMA1_HUMAN (P52294) Importin alpha-1 subunit (Karyopherin alpha-1 subunit)|
           (SRP1-beta) (RAG cohort protein 2) (Nucleoprotein
           interactor 1) (NPI-1)
          Length = 538

 Score = 30.0 bits (66), Expect = 5.2
 Identities = 13/59 (22%), Positives = 32/59 (54%)
 Frame = +3

Query: 189 KKNYPTRANVNKKLCQNQLDEQKKDEEAQMRRQELKEVIAKQKXXXXXXXXXXXXYLSD 365
           K+N+  ++  NK L  +++  ++++E  Q+R+Q+ +E + K++             +SD
Sbjct: 6   KENFRLKSYKNKSLNPDEMRRRREEEGLQLRKQKREEQLFKRRNVATAEEETEEEVMSD 64

>CLC1_SCHPO (Q9USP6) Clathrin light chain (CLC)|
          Length = 229

 Score = 30.0 bits (66), Expect = 5.2
 Identities = 19/92 (20%), Positives = 40/92 (43%), Gaps = 2/92 (2%)
 Frame = +3

Query: 48  EGKSNFTSSDSPISGDCHIDSPASGGGRKRPPIIYDKNEVKQWVQARKKNYPTRANVNKK 227
           +    F++  +P  G   +  P    G   P        V++W + + K    R   +KK
Sbjct: 78  QASGTFSAPKAPYMGQAEVHPPEDESGDPEP--------VRKWKEDQMKRIQERDESSKK 129

Query: 228 LCQNQLDEQKK--DEEAQMRRQELKEVIAKQK 317
           L ++ +++ +K  D+  +    +  +VIAK +
Sbjct: 130 LRESNIEKARKAIDDFYENFNDKRDKVIAKSR 161

>RNC_BACSU (P51833) Ribonuclease III (EC 3.1.26.3) (RNase III)|
          Length = 249

 Score = 29.6 bits (65), Expect = 6.7
 Identities = 24/66 (36%), Positives = 30/66 (45%), Gaps = 3/66 (4%)
 Frame = +1

Query: 22  GKXEEMTGEKESPILXXXXXXXXXXXXXXXXHLEEVESALLSFMTKMKLNSG-FKHAR-- 192
           GK EEMTG ++ P L                 LE VES L  ++   K+N G F H    
Sbjct: 118 GKGEEMTGGRKRPALLADVFEAFIGALYLDQGLEPVESFLKVYVFP-KINDGAFSHVMDF 176

Query: 193 KTTLQE 210
           K+ LQE
Sbjct: 177 KSQLQE 182

>RCOR1_XENLA (Q90WN5) REST corepressor 1 (Protein CoREST) (xCoREST)|
          Length = 431

 Score = 29.6 bits (65), Expect = 6.7
 Identities = 24/81 (29%), Positives = 35/81 (43%), Gaps = 7/81 (8%)
 Frame = +3

Query: 30  GRNDWREGKSNFTSSDSPISGDCHIDSPASGGGRKRPPIIYDKNEVKQWVQARKKNYPTR 209
           G N W EG S+ +S D P            GGG  R  + Y +  V ++ Q   KN   R
Sbjct: 30  GSNSWEEGSSSSSSDDEP------------GGGGMRVGLQY-QAVVPEFDQEVAKNCQER 76

Query: 210 ANV-------NKKLCQNQLDE 251
            N+       N+ + + +LDE
Sbjct: 77  ENLGMLVWSPNQNISEAKLDE 97

>MPC70_YEAST (Q12411) Sporulation-specific protein 21 (Meiotic plaque component|
           protein 70)
          Length = 609

 Score = 29.3 bits (64), Expect = 8.8
 Identities = 17/54 (31%), Positives = 29/54 (53%)
 Frame = +3

Query: 144 IIYDKNEVKQWVQARKKNYPTRANVNKKLCQNQLDEQKKDEEAQMRRQELKEVI 305
           + ++ NE+K+     KKN    +N NK L  +  +E+KK  + +  R  LK+ I
Sbjct: 426 LTFECNELKEICLKYKKNIENISNTNKNLQNSFKNERKKVLDLRNERNLLKKEI 479

>DAAM1_MOUSE (Q8BPM0) Disheveled-associated activator of morphogenesis 1|
          Length = 1071

 Score = 29.3 bits (64), Expect = 8.8
 Identities = 15/54 (27%), Positives = 29/54 (53%)
 Frame = +3

Query: 144 IIYDKNEVKQWVQARKKNYPTRANVNKKLCQNQLDEQKKDEEAQMRRQELKEVI 305
           ++ ++NEVKQW +  +K       + +KL       +KK+ E   + QE +E++
Sbjct: 438 MLVNENEVKQWKEQAEKMRKEHNELQQKL-------EKKERECDAKTQEKEEMM 484

>DAAM1_HUMAN (Q9Y4D1) Disheveled-associated activator of morphogenesis 1|
          Length = 1078

 Score = 29.3 bits (64), Expect = 8.8
 Identities = 15/54 (27%), Positives = 29/54 (53%)
 Frame = +3

Query: 144 IIYDKNEVKQWVQARKKNYPTRANVNKKLCQNQLDEQKKDEEAQMRRQELKEVI 305
           ++ ++NEVKQW +  +K       + +KL       +KK+ E   + QE +E++
Sbjct: 438 MLVNENEVKQWKEQAEKMRKEHNELQQKL-------EKKERECDAKTQEKEEMM 484


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.318    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 71,166,099
Number of Sequences: 219361
Number of extensions: 1271240
Number of successful extensions: 3768
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 3585
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 3759
length of database: 80,573,946
effective HSP length: 106
effective length of database: 57,321,680
effective search space used: 5101629520
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)