ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日：2016年5月1日

Clone Information

BLAST Search Result

Clone Name bags8k02
Clone Library Name barley_pub
No. Definition Score
(bits)		 E
Value
1ref|XM_450193.1| Oryza sativa (japonica cultivar-group), mRNA 615 e-173
2dbj|AK072690.1| Oryza sativa (japonica cultivar-group) cDNA clon... 615 e-173
3dbj|AP008215.1| Oryza sativa (japonica cultivar-group) genomic D... 141 3e-30
4dbj|AP006548.1| Oryza sativa (japonica cultivar-group) genomic D... 141 3e-30
5gb|AY108424.1| Zea mays PCO149843 mRNA sequence 111 3e-21
6ref|NM_120008.1| Arabidopsis thaliana ATP binding / amino acid b... 54 5e-04
7ref|XM_478075.1| Oryza sativa (japonica cultivar-group), mRNA 54 5e-04
8gb|AC130809.25| Medicago truncatula clone mth2-15i12, complete s... 54 5e-04
9gb|AC151823.11| Medicago truncatula clone mth2-45h2, complete se... 54 5e-04
10emb|AL161593.2|ATCHRIV89 Arabidopsis thaliana DNA chromosome 4, ... 54 5e-04
11emb|AL035539.1|ATF22I13 Arabidopsis thaliana DNA chromosome 4, B... 54 5e-04
12dbj|AP008213.1| Oryza sativa (japonica cultivar-group) genomic D... 54 5e-04
13gb|AC069558.5|AC069558 Genomic Sequence For Arabidopsis thaliana... 54 5e-04
14dbj|AP004315.3| Oryza sativa (japonica cultivar-group) genomic D... 54 5e-04
15dbj|AK066198.1| Oryza sativa (japonica cultivar-group) cDNA clon... 54 5e-04
16emb|AL035540.1|ATF20M13 Arabidopsis thaliana DNA chromosome 4, B... 54 5e-04
17ref|XM_463904.1| Oryza sativa (japonica cultivar-group), mRNA 48 0.033
18dbj|AK103704.1| Oryza sativa (japonica cultivar-group) cDNA clon... 48 0.033
19emb|CR962130.2| Medicago truncatula chromosome 5 clone mte1-63h2... 48 0.033
20ref|XM_425112.1| PREDICTED: Gallus gallus similar to hydrocephal... 44 0.51
21emb|BX004823.23| Zebrafish DNA sequence from clone DKEY-13A3 in ... 42 2.0
22gb|AC102602.9| Mus musculus chromosome 9, clone RP23-381L11, com... 42 2.0
23dbj|AP004948.1| Lotus japonicus genomic DNA, chromosome , clone:... 42 2.0
24emb|AL590403.13| Human DNA sequence from clone RP13-459B11 on ch... 40 8.0
25emb|AL589941.6| Human DNA sequence from clone RP13-377P8 on chro... 40 8.0
26emb|AL161945.31| Human DNA sequence from clone RP4-606D23 on chr... 40 8.0
27emb|X67029.1|BTGUAKIN Bos taurus mRNA for guanylate kinase 40 8.0
28emb|AL939117.1|SCO939117 Streptomyces coelicolor A3(2) complete ... 40 8.0
29dbj|AP007255.1| Magnetospirillum magneticum AMB-1 DNA, complete ... 40 8.0
30gb|BC102478.1| Bos taurus guanylate kinase 1, mRNA (cDNA clone M... 40 8.0
31dbj|AP008212.1| Oryza sativa (japonica cultivar-group) genomic D... 40 8.0
32gb|AC154541.2| Mus musculus BAC clone RP23-458N20 from chromosom... 40 8.0
33ref|XM_343107.2| PREDICTED: Rattus norvegicus similar to KIAA182... 40 8.0
34dbj|AP007231.2| Oryza sativa (japonica cultivar-group) genomic D... 40 8.0
35dbj|AP003685.3| Oryza sativa (japonica cultivar-group) genomic D... 40 8.0
36dbj|AK073747.1| Oryza sativa (japonica cultivar-group) cDNA clon... 40 8.0
37emb|AL646052.1| Ralstonia solanacearum GMI1000 chromosome comple... 40 8.0
38gb|AC123827.4| Mus musculus BAC clone RP24-100N12 from 5, comple... 40 8.0
39emb|AJ628642.1| Streptomyces hygroscopicus subsp. hygroscopicus ... 40 8.0
40ref|NM_174078.3| Bos taurus guanylate kinase 1 (GUK1), mRNA 40 8.0 
>ref|XM_450193.1| Oryza sativa (japonica cultivar-group),  mRNA
          Length = 1812

 Score =  615 bits (310), Expect = e-173
 Identities = 462/510 (90%), Gaps = 7/510 (1%)
 Strand = Plus / Plus

                                                                       
Query: 72  ggcttcgacgacgagctctggagccacttcaaccgcctccccgcacgctacgccatggna 131
           |||||||||||||||||||||| ||||||||||||||| |||||||| |||||||||| |
Sbjct: 244 ggcttcgacgacgagctctggaaccacttcaaccgccttcccgcacgttacgccatgg-a 302

                                                                       
Query: 132 cgtgaacgtggagagggcggaggacgtgctcacgcacaagcgcctcctcgagctggccag 191
            ||||||||||||||||||||||||||||| ||||| ||||| ||| | |||| ||| | 
Sbjct: 303 tgtgaacgtggagagggcggaggacgtgctgacgcataagcggctcttggagcaggcgaa 362

                                                                       
Query: 192 ggatcccgcgcagcgcccggccttcgccgtgcgggccgtgcaggtatctccaattcttga 251
           |||||| |||||||| ||||| ||||||||||||||||||||||| ||||||||||||||
Sbjct: 363 ggatccggcgcagcggccggctttcgccgtgcgggccgtgcaggtgtctccaattcttga 422

                                                                       
Query: 252 tgggaatcagactgatgctgattcacacactgcaggggaggaagttgcttcaaggctgtt 311
           ||||||||||||||||||||||||| |||||||||||||||| |||||||||||||||||
Sbjct: 423 tgggaatcagactgatgctgattcaaacactgcaggggaggaggttgcttcaaggctgtt 482

                                                                       
Query: 312 gaataggcaacaaagcattcaccctcctcctgcctttggttcatctacaaaccttgacgc 371
           ||| || ||||| |||||||||||||||||||||||||||||||||||||| ||||| ||
Sbjct: 483 gaacagacaacagagcattcaccctcctcctgcctttggttcatctacaaatcttgaggc 542

                                                                       
Query: 372 ccttgctcttgaagccagcaagtcgcaaggccaagatcaggatagcacatcggataatgt 431
           |||||||||||| || |||||||| ||||| ||||| || |||||||| || ||||||| 
Sbjct: 543 ccttgctcttgaggctagcaagtcccaaggacaagaccatgatagcacctcagataatg- 601

                                                                       
Query: 432 tcgatctctctacagacccatgcatgaaatcaccttctctaccattgacaaaccaaagct 491
           || ||     ||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct: 602 tcaat-----tacagacccatgcatgaaatcaccttctccaccattgacaaaccaaagct 656

                                                                       
Query: 492 tctcagcgagctgacatgtctgcttggtgaaattggtctcaacattcaagaagcacatgc 551
           ||| |||||||| ||||  |||||||| ||| ||||||| ||||||||||||||||||||
Sbjct: 657 tcttagcgagctcacatcgctgcttggcgaacttggtctaaacattcaagaagcacatgc 716

                                         
Query: 552 gttttcgacaaatgatggctactcactcga 581
           |||||| |||||||||||||||||||||||
Sbjct: 717 gttttcaacaaatgatggctactcactcga 746
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>dbj|AK072690.1| Oryza sativa (japonica cultivar-group) cDNA clone:J023139F03, full
           insert sequence
          Length = 2263

 Score =  615 bits (310), Expect = e-173
 Identities = 462/510 (90%), Gaps = 7/510 (1%)
 Strand = Plus / Plus

                                                                       
Query: 72  ggcttcgacgacgagctctggagccacttcaaccgcctccccgcacgctacgccatggna 131
           |||||||||||||||||||||| ||||||||||||||| |||||||| |||||||||| |
Sbjct: 277 ggcttcgacgacgagctctggaaccacttcaaccgccttcccgcacgttacgccatgg-a 335

                                                                       
Query: 132 cgtgaacgtggagagggcggaggacgtgctcacgcacaagcgcctcctcgagctggccag 191
            ||||||||||||||||||||||||||||| ||||| ||||| ||| | |||| ||| | 
Sbjct: 336 tgtgaacgtggagagggcggaggacgtgctgacgcataagcggctcttggagcaggcgaa 395

                                                                       
Query: 192 ggatcccgcgcagcgcccggccttcgccgtgcgggccgtgcaggtatctccaattcttga 251
           |||||| |||||||| ||||| ||||||||||||||||||||||| ||||||||||||||
Sbjct: 396 ggatccggcgcagcggccggctttcgccgtgcgggccgtgcaggtgtctccaattcttga 455

                                                                       
Query: 252 tgggaatcagactgatgctgattcacacactgcaggggaggaagttgcttcaaggctgtt 311
           ||||||||||||||||||||||||| |||||||||||||||| |||||||||||||||||
Sbjct: 456 tgggaatcagactgatgctgattcaaacactgcaggggaggaggttgcttcaaggctgtt 515

                                                                       
Query: 312 gaataggcaacaaagcattcaccctcctcctgcctttggttcatctacaaaccttgacgc 371
           ||| || ||||| |||||||||||||||||||||||||||||||||||||| ||||| ||
Sbjct: 516 gaacagacaacagagcattcaccctcctcctgcctttggttcatctacaaatcttgaggc 575

                                                                       
Query: 372 ccttgctcttgaagccagcaagtcgcaaggccaagatcaggatagcacatcggataatgt 431
           |||||||||||| || |||||||| ||||| ||||| || |||||||| || ||||||| 
Sbjct: 576 ccttgctcttgaggctagcaagtcccaaggacaagaccatgatagcacctcagataatg- 634

                                                                       
Query: 432 tcgatctctctacagacccatgcatgaaatcaccttctctaccattgacaaaccaaagct 491
           || ||     ||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct: 635 tcaat-----tacagacccatgcatgaaatcaccttctccaccattgacaaaccaaagct 689

                                                                       
Query: 492 tctcagcgagctgacatgtctgcttggtgaaattggtctcaacattcaagaagcacatgc 551
           ||| |||||||| ||||  |||||||| ||| ||||||| ||||||||||||||||||||
Sbjct: 690 tcttagcgagctcacatcgctgcttggcgaacttggtctaaacattcaagaagcacatgc 749

                                         
Query: 552 gttttcgacaaatgatggctactcactcga 581
           |||||| |||||||||||||||||||||||
Sbjct: 750 gttttcaacaaatgatggctactcactcga 779
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>dbj|AP008215.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 9, complete
                sequence
          Length = 22696651

 Score =  141 bits (71), Expect = 3e-30
 Identities = 86/91 (94%)
 Strand = Plus / Plus

                                                                            
Query: 233      aggtatctccaattcttgatgggaatcagactgatgctgattcacacactgcaggggagg 292
                |||| ||||||||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct: 21188593 aggtgtctccaattcttgatgggaatcagactgatgctgattcaaacactgcaggggagg 21188652

                                               
Query: 293      aagttgcttcaaggctgttgaataggcaaca 323
                | |||||||||||||||||||| || |||||
Sbjct: 21188653 aggttgcttcaaggctgttgaacagacaaca 21188683



 Score =  133 bits (67), Expect = 7e-28
 Identities = 97/107 (90%)
 Strand = Plus / Plus

                                                                            
Query: 325      agcattcaccctcctcctgcctttggttcatctacaaaccttgacgcccttgctcttgaa 384
                |||||||||||||||||||||||||||||||||||||| ||||| |||||||||||||| 
Sbjct: 21188837 agcattcaccctcctcctgcctttggttcatctacaaatcttgaggcccttgctcttgag 21188896

                                                               
Query: 385      gccagcaagtcgcaaggccaagatcaggatagcacatcggataatgt 431
                || |||||||| ||||| ||||| || |||||||| || ||||||||
Sbjct: 21188897 gctagcaagtcccaaggacaagaccatgatagcacctcagataatgt 21188943



 Score =  121 bits (61), Expect = 3e-24
 Identities = 104/117 (88%), Gaps = 1/117 (0%)
 Strand = Plus / Plus

                                                                            
Query: 120      tacgccatggnacgtgaacgtggagagggcggaggacgtgctcacgcacaagcgcctcct 179
                |||||||||| | ||||||||||||||||||||||||||||| ||||| ||||| ||| |
Sbjct: 21187322 tacgccatgg-atgtgaacgtggagagggcggaggacgtgctgacgcataagcggctctt 21187380

                                                                         
Query: 180      cgagctggccagggatcccgcgcagcgcccggccttcgccgtgcgggccgtgcaggt 236
                 |||| ||| | |||||| |||||||| ||||| |||||||||||||||||||||||
Sbjct: 21187381 ggagcaggcgaaggatccggcgcagcggccggctttcgccgtgcgggccgtgcaggt 21187437



 Score =  109 bits (55), Expect = 1e-20
 Identities = 67/71 (94%)
 Strand = Plus / Plus

                                                                            
Query: 511      ctgcttggtgaaattggtctcaacattcaagaagcacatgcgttttcgacaaatgatggc 570
                |||||||| ||| ||||||| |||||||||||||||||||||||||| ||||||||||||
Sbjct: 21189357 ctgcttggcgaacttggtctaaacattcaagaagcacatgcgttttcaacaaatgatggc 21189416

                           
Query: 571      tactcactcga 581
                |||||||||||
Sbjct: 21189417 tactcactcga 21189427



 Score =  103 bits (52), Expect = 6e-19
 Identities = 58/60 (96%)
 Strand = Plus / Plus

                                                                            
Query: 442      tacagacccatgcatgaaatcaccttctctaccattgacaaaccaaagcttctcagcgag 501
                ||||||||||||||||||||||||||||| ||||||||||||||||||||||| ||||||
Sbjct: 21189134 tacagacccatgcatgaaatcaccttctccaccattgacaaaccaaagcttcttagcgag 21189193



 Score = 77.8 bits (39), Expect = 4e-11
 Identities = 45/47 (95%)
 Strand = Plus / Plus

                                                               
Query: 72       ggcttcgacgacgagctctggagccacttcaaccgcctccccgcacg 118
                |||||||||||||||||||||| ||||||||||||||| ||||||||
Sbjct: 21187132 ggcttcgacgacgagctctggaaccacttcaaccgccttcccgcacg 21187178



 Score = 44.1 bits (22), Expect = 0.51
 Identities = 22/22 (100%)
 Strand = Plus / Plus

                                      
Query: 327      cattcaccctcctcctgccttt 348
                ||||||||||||||||||||||
Sbjct: 21188786 cattcaccctcctcctgccttt 21188807
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>dbj|AP006548.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 9, PAC
             clone: P0705E11
          Length = 140729

 Score =  141 bits (71), Expect = 3e-30
 Identities = 86/91 (94%)
 Strand = Plus / Plus

                                                                         
Query: 233   aggtatctccaattcttgatgggaatcagactgatgctgattcacacactgcaggggagg 292
             |||| ||||||||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct: 59350 aggtgtctccaattcttgatgggaatcagactgatgctgattcaaacactgcaggggagg 59409

                                            
Query: 293   aagttgcttcaaggctgttgaataggcaaca 323
             | |||||||||||||||||||| || |||||
Sbjct: 59410 aggttgcttcaaggctgttgaacagacaaca 59440



 Score =  133 bits (67), Expect = 7e-28
 Identities = 97/107 (90%)
 Strand = Plus / Plus

                                                                         
Query: 325   agcattcaccctcctcctgcctttggttcatctacaaaccttgacgcccttgctcttgaa 384
             |||||||||||||||||||||||||||||||||||||| ||||| |||||||||||||| 
Sbjct: 59594 agcattcaccctcctcctgcctttggttcatctacaaatcttgaggcccttgctcttgag 59653

                                                            
Query: 385   gccagcaagtcgcaaggccaagatcaggatagcacatcggataatgt 431
             || |||||||| ||||| ||||| || |||||||| || ||||||||
Sbjct: 59654 gctagcaagtcccaaggacaagaccatgatagcacctcagataatgt 59700



 Score =  121 bits (61), Expect = 3e-24
 Identities = 104/117 (88%), Gaps = 1/117 (0%)
 Strand = Plus / Plus

                                                                         
Query: 120   tacgccatggnacgtgaacgtggagagggcggaggacgtgctcacgcacaagcgcctcct 179
             |||||||||| | ||||||||||||||||||||||||||||| ||||| ||||| ||| |
Sbjct: 58079 tacgccatgg-atgtgaacgtggagagggcggaggacgtgctgacgcataagcggctctt 58137

                                                                      
Query: 180   cgagctggccagggatcccgcgcagcgcccggccttcgccgtgcgggccgtgcaggt 236
              |||| ||| | |||||| |||||||| ||||| |||||||||||||||||||||||
Sbjct: 58138 ggagcaggcgaaggatccggcgcagcggccggctttcgccgtgcgggccgtgcaggt 58194



 Score =  109 bits (55), Expect = 1e-20
 Identities = 67/71 (94%)
 Strand = Plus / Plus

                                                                         
Query: 511   ctgcttggtgaaattggtctcaacattcaagaagcacatgcgttttcgacaaatgatggc 570
             |||||||| ||| ||||||| |||||||||||||||||||||||||| ||||||||||||
Sbjct: 60114 ctgcttggcgaacttggtctaaacattcaagaagcacatgcgttttcaacaaatgatggc 60173

                        
Query: 571   tactcactcga 581
             |||||||||||
Sbjct: 60174 tactcactcga 60184



 Score =  103 bits (52), Expect = 6e-19
 Identities = 58/60 (96%)
 Strand = Plus / Plus

                                                                         
Query: 442   tacagacccatgcatgaaatcaccttctctaccattgacaaaccaaagcttctcagcgag 501
             ||||||||||||||||||||||||||||| ||||||||||||||||||||||| ||||||
Sbjct: 59891 tacagacccatgcatgaaatcaccttctccaccattgacaaaccaaagcttcttagcgag 59950



 Score = 77.8 bits (39), Expect = 4e-11
 Identities = 45/47 (95%)
 Strand = Plus / Plus

                                                            
Query: 72    ggcttcgacgacgagctctggagccacttcaaccgcctccccgcacg 118
             |||||||||||||||||||||| ||||||||||||||| ||||||||
Sbjct: 57889 ggcttcgacgacgagctctggaaccacttcaaccgccttcccgcacg 57935



 Score = 44.1 bits (22), Expect = 0.51
 Identities = 22/22 (100%)
 Strand = Plus / Plus

                                   
Query: 327   cattcaccctcctcctgccttt 348
             ||||||||||||||||||||||
Sbjct: 59543 cattcaccctcctcctgccttt 59564
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>gb|AY108424.1| Zea mays PCO149843 mRNA sequence
          Length = 1330

 Score =  111 bits (56), Expect = 3e-21
 Identities = 74/80 (92%)
 Strand = Plus / Plus

                                                                       
Query: 499 gagctgacatgtctgcttggtgaaattggtctcaacattcaagaagcacatgcgttttcg 558
           |||||||||| ||||||||||||  ||||||| |||||||||||||||||||| ||||| 
Sbjct: 41  gagctgacatctctgcttggtgagcttggtctaaacattcaagaagcacatgcattttca 100

                               
Query: 559 acaaatgatggctactcact 578
           ||||||||||||||||||||
Sbjct: 101 acaaatgatggctactcact 120
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>ref|NM_120008.1| Arabidopsis thaliana ATP binding / amino acid binding / protein
           kinase/ protein serine/threonine kinase/
           protein-tyrosine kinase AT4G38470 mRNA, complete cds
          Length = 1858

 Score = 54.0 bits (27), Expect = 5e-04
 Identities = 42/47 (89%)
 Strand = Plus / Plus

                                                          
Query: 532 aacattcaagaagcacatgcgttttcgacaaatgatggctactcact 578
           ||||||||||| |||||||| || || |||| |||||||||||||||
Sbjct: 607 aacattcaagaggcacatgctttctctacaactgatggctactcact 653



 Score = 44.1 bits (22), Expect = 0.51
 Identities = 31/34 (91%)
 Strand = Plus / Plus

                                             
Query: 323 aaagcattcaccctcctcctgcctttggttcatc 356
           |||||||||| || || |||||||||||||||||
Sbjct: 398 aaagcattcatccgccgcctgcctttggttcatc 431
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>ref|XM_478075.1| Oryza sativa (japonica cultivar-group),  mRNA
          Length = 1976

 Score = 54.0 bits (27), Expect = 5e-04
 Identities = 51/59 (86%)
 Strand = Plus / Plus

                                                                      
Query: 514 cttggtgaaattggtctcaacattcaagaagcacatgcgttttcgacaaatgatggcta 572
           ||||| ||| |||| || ||||| |||||||||||||| |||||||| | |||||||||
Sbjct: 624 cttggggaacttggccttaacatccaagaagcacatgcattttcgacgagtgatggcta 682
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>gb|AC130809.25| Medicago truncatula clone mth2-15i12, complete sequence
          Length = 114664

 Score = 54.0 bits (27), Expect = 5e-04
 Identities = 45/51 (88%)
 Strand = Plus / Plus

                                                                
Query: 448   cccatgcatgaaatcaccttctctaccattgacaaaccaaagcttctcagc 498
             |||||||||||||||||| |||| ||   |||||| |||||||||||||||
Sbjct: 82180 cccatgcatgaaatcaccgtctcaacagatgacaagccaaagcttctcagc 82230
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>gb|AC151823.11| Medicago truncatula clone mth2-45h2, complete sequence
          Length = 125855

 Score = 54.0 bits (27), Expect = 5e-04
 Identities = 45/51 (88%)
 Strand = Plus / Minus

                                                                
Query: 448   cccatgcatgaaatcaccttctctaccattgacaaaccaaagcttctcagc 498
             |||||||||||||||||| |||| ||   |||||| |||||||||||||||
Sbjct: 59899 cccatgcatgaaatcaccgtctcaacagatgacaagccaaagcttctcagc 59849
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>emb|AL161593.2|ATCHRIV89 Arabidopsis thaliana DNA chromosome 4, contig fragment No. 89
          Length = 199789

 Score = 54.0 bits (27), Expect = 5e-04
 Identities = 42/47 (89%)
 Strand = Plus / Plus

                                                             
Query: 532    aacattcaagaagcacatgcgttttcgacaaatgatggctactcact 578
              ||||||||||| |||||||| || || |||| |||||||||||||||
Sbjct: 109926 aacattcaagaggcacatgctttctctacaactgatggctactcact 109972



 Score = 40.1 bits (20), Expect = 8.0
 Identities = 29/32 (90%)
 Strand = Plus / Plus

                                              
Query: 325    agcattcaccctcctcctgcctttggttcatc 356
              |||||||| || || |||||||||||||||||
Sbjct: 109168 agcattcatccgccgcctgcctttggttcatc 109199
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>emb|AL035539.1|ATF22I13 Arabidopsis thaliana DNA chromosome 4, BAC clone  F22I13 (ESSA project)
          Length = 93760

 Score = 54.0 bits (27), Expect = 5e-04
 Identities = 42/47 (89%)
 Strand = Plus / Plus

                                                            
Query: 532   aacattcaagaagcacatgcgttttcgacaaatgatggctactcact 578
             ||||||||||| |||||||| || || |||| |||||||||||||||
Sbjct: 68968 aacattcaagaggcacatgctttctctacaactgatggctactcact 69014



 Score = 40.1 bits (20), Expect = 8.0
 Identities = 29/32 (90%)
 Strand = Plus / Plus

                                             
Query: 325   agcattcaccctcctcctgcctttggttcatc 356
             |||||||| || || |||||||||||||||||
Sbjct: 68210 agcattcatccgccgcctgcctttggttcatc 68241
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>dbj|AP008213.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 7, complete
                sequence
          Length = 29644043

 Score = 54.0 bits (27), Expect = 5e-04
 Identities = 51/59 (86%)
 Strand = Plus / Minus

                                                                           
Query: 514      cttggtgaaattggtctcaacattcaagaagcacatgcgttttcgacaaatgatggcta 572
                ||||| ||| |||| || ||||| |||||||||||||| |||||||| | |||||||||
Sbjct: 17150763 cttggggaacttggccttaacatccaagaagcacatgcattttcgacgagtgatggcta 17150705



 Score = 46.1 bits (23), Expect = 0.13
 Identities = 35/39 (89%)
 Strand = Plus / Minus

                                                       
Query: 77       cgacgacgagctctggagccacttcaaccgcctccccgc 115
                ||||||||||||||||  ||||||| || ||||||||||
Sbjct: 17155546 cgacgacgagctctgggcccacttctacagcctccccgc 17155508
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>gb|AC069558.5|AC069558 Genomic Sequence For Arabidopsis thaliana Clone T5G13 From Chromosome
             IV, complete sequence
          Length = 107740

 Score = 54.0 bits (27), Expect = 5e-04
 Identities = 42/47 (89%)
 Strand = Plus / Minus

                                                            
Query: 532   aacattcaagaagcacatgcgttttcgacaaatgatggctactcact 578
             ||||||||||| |||||||| || || |||| |||||||||||||||
Sbjct: 55601 aacattcaagaggcacatgctttctctacaactgatggctactcact 55555



 Score = 40.1 bits (20), Expect = 8.0
 Identities = 29/32 (90%)
 Strand = Plus / Minus

                                             
Query: 325   agcattcaccctcctcctgcctttggttcatc 356
             |||||||| || || |||||||||||||||||
Sbjct: 56359 agcattcatccgccgcctgcctttggttcatc 56328
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>dbj|AP004315.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 7, PAC
              clone:P0571D04
          Length = 149302

 Score = 54.0 bits (27), Expect = 5e-04
 Identities = 51/59 (86%)
 Strand = Plus / Minus

                                                                         
Query: 514    cttggtgaaattggtctcaacattcaagaagcacatgcgttttcgacaaatgatggcta 572
              ||||| ||| |||| || ||||| |||||||||||||| |||||||| | |||||||||
Sbjct: 103889 cttggggaacttggccttaacatccaagaagcacatgcattttcgacgagtgatggcta 103831



 Score = 46.1 bits (23), Expect = 0.13
 Identities = 35/39 (89%)
 Strand = Plus / Minus

                                                     
Query: 77     cgacgacgagctctggagccacttcaaccgcctccccgc 115
              ||||||||||||||||  ||||||| || ||||||||||
Sbjct: 108672 cgacgacgagctctgggcccacttctacagcctccccgc 108634
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>dbj|AK066198.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013056N03, full
           insert sequence
          Length = 1975

 Score = 54.0 bits (27), Expect = 5e-04
 Identities = 51/59 (86%)
 Strand = Plus / Plus

                                                                      
Query: 514 cttggtgaaattggtctcaacattcaagaagcacatgcgttttcgacaaatgatggcta 572
           ||||| ||| |||| || ||||| |||||||||||||| |||||||| | |||||||||
Sbjct: 623 cttggggaacttggccttaacatccaagaagcacatgcattttcgacgagtgatggcta 681
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>emb|AL035540.1|ATF20M13 Arabidopsis thaliana DNA chromosome 4, BAC clone  F20M13 (ESSA project)
          Length = 91938

 Score = 54.0 bits (27), Expect = 5e-04
 Identities = 42/47 (89%)
 Strand = Plus / Plus

                                                            
Query: 532   aacattcaagaagcacatgcgttttcgacaaatgatggctactcact 578
             ||||||||||| |||||||| || || |||| |||||||||||||||
Sbjct: 10867 aacattcaagaggcacatgctttctctacaactgatggctactcact 10913



 Score = 40.1 bits (20), Expect = 8.0
 Identities = 29/32 (90%)
 Strand = Plus / Plus

                                             
Query: 325   agcattcaccctcctcctgcctttggttcatc 356
             |||||||| || || |||||||||||||||||
Sbjct: 10109 agcattcatccgccgcctgcctttggttcatc 10140
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>ref|XM_463904.1| Oryza sativa (japonica cultivar-group),  mRNA
          Length = 2251

 Score = 48.1 bits (24), Expect = 0.033
 Identities = 73/88 (82%), Gaps = 1/88 (1%)
 Strand = Plus / Plus

                                                                       
Query: 81  gacgagctctggagccacttcaaccgcctccccgcacgctacgccatggnacgtgaacgt 140
           |||| |||||||  ||||||| ||||||||||||| || |||||  ||| | ||| ||| 
Sbjct: 366 gacgcgctctgggcccacttccaccgcctccccgcccggtacgcgctgg-atgtgcacgc 424

                                       
Query: 141 ggagagggcggaggacgtgctcacgcac 168
           ||| ||||||||||||||| | ||||||
Sbjct: 425 ggatagggcggaggacgtggtgacgcac 452
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>dbj|AK103704.1| Oryza sativa (japonica cultivar-group) cDNA clone:J033136N12, full
           insert sequence
          Length = 2251

 Score = 48.1 bits (24), Expect = 0.033
 Identities = 73/88 (82%), Gaps = 1/88 (1%)
 Strand = Plus / Plus

                                                                       
Query: 81  gacgagctctggagccacttcaaccgcctccccgcacgctacgccatggnacgtgaacgt 140
           |||| |||||||  ||||||| ||||||||||||| || |||||  ||| | ||| ||| 
Sbjct: 366 gacgcgctctgggcccacttccaccgcctccccgcccggtacgcgctgg-atgtgcacgc 424

                                       
Query: 141 ggagagggcggaggacgtgctcacgcac 168
           ||| ||||||||||||||| | ||||||
Sbjct: 425 ggatagggcggaggacgtggtgacgcac 452
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>emb|CR962130.2| Medicago truncatula chromosome 5 clone mte1-63h20, COMPLETE SEQUENCE
          Length = 115239

 Score = 48.1 bits (24), Expect = 0.033
 Identities = 39/44 (88%)
 Strand = Plus / Plus

                                                         
Query: 514   cttggtgaaattggtctcaacattcaagaagcacatgcgttttc 557
             |||||||| ||||| || || ||||||||||| |||||||||||
Sbjct: 60409 cttggtgagattggactaaatattcaagaagctcatgcgttttc 60452
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>ref|XM_425112.1| PREDICTED: Gallus gallus similar to hydrocephalus-inducing protein
             (LOC427538), mRNA
          Length = 16500

 Score = 44.1 bits (22), Expect = 0.51
 Identities = 22/22 (100%)
 Strand = Plus / Plus

                                   
Query: 207   cccggccttcgccgtgcgggcc 228
             ||||||||||||||||||||||
Sbjct: 16302 cccggccttcgccgtgcgggcc 16323
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>emb|BX004823.23| Zebrafish DNA sequence from clone DKEY-13A3 in linkage group 14, complete
              sequence
          Length = 197683

 Score = 42.1 bits (21), Expect = 2.0
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                   
Query: 316    aggcaacaaagcattcaccct 336
              |||||||||||||||||||||
Sbjct: 122752 aggcaacaaagcattcaccct 122732
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>gb|AC102602.9| Mus musculus chromosome 9, clone RP23-381L11, complete sequence
          Length = 253504

 Score = 42.1 bits (21), Expect = 2.0
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                   
Query: 322    caaagcattcaccctcctcct 342
              |||||||||||||||||||||
Sbjct: 184700 caaagcattcaccctcctcct 184720
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>dbj|AP004948.1| Lotus japonicus genomic DNA, chromosome , clone:LjT35I07, TM0121b,
             complete sequence
          Length = 56086

 Score = 42.1 bits (21), Expect = 2.0
 Identities = 24/25 (96%)
 Strand = Plus / Plus

                                      
Query: 533   acattcaagaagcacatgcgttttc 557
             ||||||||||||||||||| |||||
Sbjct: 14937 acattcaagaagcacatgctttttc 14961
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>emb|AL590403.13| Human DNA sequence from clone RP13-459B11 on chromosome 6 Contains
           the GRM4 gene for glutamate receptor (metabotropic 4)
           and a CpG island, complete sequence
          Length = 118771

 Score = 40.1 bits (20), Expect = 8.0
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 374 ttgctcttgaagccagcaag 393
           ||||||||||||||||||||
Sbjct: 649 ttgctcttgaagccagcaag 630
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>emb|AL589941.6| Human DNA sequence from clone RP13-377P8 on chromosome 6, complete
             sequence
          Length = 80600

 Score = 40.1 bits (20), Expect = 8.0
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 374   ttgctcttgaagccagcaag 393
             ||||||||||||||||||||
Sbjct: 79249 ttgctcttgaagccagcaag 79230
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>emb|AL161945.31| Human DNA sequence from clone RP4-606D23 on chromosome 20 Contains
             ESTs, STSs and GSSs, complete sequence
          Length = 70299

 Score = 40.1 bits (20), Expect = 8.0
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                     
Query: 533   acattcaagaagcacatgcgtttt 556
             |||||||||||||||||| |||||
Sbjct: 32889 acattcaagaagcacatgggtttt 32866
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>emb|X67029.1|BTGUAKIN Bos taurus mRNA for guanylate kinase
          Length = 961

 Score = 40.1 bits (20), Expect = 8.0
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 216 cgccgtgcgggccgtgcagg 235
           ||||||||||||||||||||
Sbjct: 341 cgccgtgcgggccgtgcagg 360
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>emb|AL939117.1|SCO939117 Streptomyces coelicolor A3(2) complete genome; segment 14/29
          Length = 309050

 Score = 40.1 bits (20), Expect = 8.0
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 210    ggccttcgccgtgcgggccg 229
              ||||||||||||||||||||
Sbjct: 101594 ggccttcgccgtgcgggccg 101575
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>dbj|AP007255.1| Magnetospirillum magneticum AMB-1 DNA, complete genome
          Length = 4967148

 Score = 40.1 bits (20), Expect = 8.0
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 203    agcgcccggccttcgccgtg 222
              ||||||||||||||||||||
Sbjct: 418140 agcgcccggccttcgccgtg 418159
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>gb|BC102478.1| Bos taurus guanylate kinase 1, mRNA (cDNA clone MGC:127626
           IMAGE:7951621), complete cds
          Length = 1210

 Score = 40.1 bits (20), Expect = 8.0
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 216 cgccgtgcgggccgtgcagg 235
           ||||||||||||||||||||
Sbjct: 457 cgccgtgcgggccgtgcagg 476
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>dbj|AP008212.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 6, complete
                sequence
          Length = 30731886

 Score = 40.1 bits (20), Expect = 8.0
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                        
Query: 444      cagacccatgcatgaaatcacctt 467
                ||||||||||||||| ||||||||
Sbjct: 30303151 cagacccatgcatgagatcacctt 30303174
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>gb|AC154541.2| Mus musculus BAC clone RP23-458N20 from chromosome 13, complete sequence
          Length = 174991

 Score = 40.1 bits (20), Expect = 8.0
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 528    tctcaacattcaagaagcac 547
              ||||||||||||||||||||
Sbjct: 101527 tctcaacattcaagaagcac 101508
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>ref|XM_343107.2| PREDICTED: Rattus norvegicus similar to KIAA1822 protein (predicted)
            (LOC362781), mRNA
          Length = 3537

 Score = 40.1 bits (20), Expect = 8.0
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 200  cgcagcgcccggccttcgcc 219
            ||||||||||||||||||||
Sbjct: 3398 cgcagcgcccggccttcgcc 3379
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>dbj|AP007231.2| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 6, PAC
              clone:P0535F09
          Length = 175050

 Score = 40.1 bits (20), Expect = 8.0
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                      
Query: 444    cagacccatgcatgaaatcacctt 467
              ||||||||||||||| ||||||||
Sbjct: 169486 cagacccatgcatgagatcacctt 169509
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>dbj|AP003685.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 6, PAC
             clone:P0548E04
          Length = 138037

 Score = 40.1 bits (20), Expect = 8.0
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                     
Query: 444   cagacccatgcatgaaatcacctt 467
             ||||||||||||||| ||||||||
Sbjct: 49746 cagacccatgcatgagatcacctt 49769
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>dbj|AK073747.1| Oryza sativa (japonica cultivar-group) cDNA clone:J033068K18, full
           insert sequence
          Length = 1961

 Score = 40.1 bits (20), Expect = 8.0
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                   
Query: 444 cagacccatgcatgaaatcacctt 467
           ||||||||||||||| ||||||||
Sbjct: 550 cagacccatgcatgagatcacctt 573
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>emb|AL646052.1| Ralstonia solanacearum GMI1000 chromosome complete sequence
          Length = 3716413

 Score = 40.1 bits (20), Expect = 8.0
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                   
Query: 486     aaagcttctcagcgagctga 505
               ||||||||||||||||||||
Sbjct: 2732281 aaagcttctcagcgagctga 2732300
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>gb|AC123827.4| Mus musculus BAC clone RP24-100N12 from 5, complete sequence
          Length = 185363

 Score = 40.1 bits (20), Expect = 8.0
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 325   agcattcaccctcctcctgc 344
             ||||||||||||||||||||
Sbjct: 43097 agcattcaccctcctcctgc 43116
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>emb|AJ628642.1| Streptomyces hygroscopicus subsp. hygroscopicus genomic region of the
            gene cluster for hygromycin B biosynthetis, strain DSM
            40578
          Length = 34921

 Score = 40.1 bits (20), Expect = 8.0
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 216  cgccgtgcgggccgtgcagg 235
            ||||||||||||||||||||
Sbjct: 8247 cgccgtgcgggccgtgcagg 8228
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>ref|NM_174078.3| Bos taurus guanylate kinase 1 (GUK1), mRNA
          Length = 1210

 Score = 40.1 bits (20), Expect = 8.0
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 216 cgccgtgcgggccgtgcagg 235
           ||||||||||||||||||||
Sbjct: 457 cgccgtgcgggccgtgcagg 476


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 4,382,205
Number of Sequences: 3902068
Number of extensions: 4382205
Number of successful extensions: 79903
Number of sequences better than 10.0: 40
Number of HSP's better than 10.0 without gapping: 40
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 79652
Number of HSP's gapped (non-prelim): 247
length of query: 589
length of database: 17,233,045,268
effective HSP length: 23
effective length of query: 566
effective length of database: 17,143,297,704
effective search space: 9703106500464
effective search space used: 9703106500464
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)
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