ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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| Clone Name | bags8j18 |
|---|---|
| Clone Library Name | barley_pub |
>Y5712_ARATH (O04658) Hypothetical protein At5g27120| Length = 439 Score = 308 bits (790), Expect(2) = 4e-86 Identities = 154/189 (81%), Positives = 166/189 (87%) Frame = +1 Query: 46 KVDTMIIQAIGLLDDLDKELNTYAMRVREWYGWHFPELTKIVADNIHYAKAVKMMGNRVN 225 KVDTMIIQAIGLLDDLDKELNTYAMRVREW+GWHFPEL KIV DNI YAKAVK+MGNR+N Sbjct: 155 KVDTMIIQAIGLLDDLDKELNTYAMRVREWFGWHFPELAKIVQDNILYAKAVKLMGNRIN 214 Query: 226 AVNLDFSXXXXXXXXXXXXXXXXXSMGTEVNELDLSNIRELCDQVLALSEYRAQLYDYLK 405 A LDFS SMGTEV++LDL +IRELCDQVL+L+EYRAQLYDYLK Sbjct: 215 AAKLDFSEILADEIEAELKEAAVISMGTEVSDLDLLHIRELCDQVLSLAEYRAQLYDYLK 274 Query: 406 SRMNTIAPNLTALVGELVGARLIAHGGSLMNLAKQPGSTIQILGAEKALFRALKTKHATP 585 SRMNTIAPNLTALVGELVGARLI+HGGSL+NLAKQPGST+QILGAEKALFRALKTKHATP Sbjct: 275 SRMNTIAPNLTALVGELVGARLISHGGSLLNLAKQPGSTVQILGAEKALFRALKTKHATP 334 Query: 586 KYGLIYHAS 612 KYGLI+HAS Sbjct: 335 KYGLIFHAS 343 Score = 29.6 bits (65), Expect(2) = 4e-86 Identities = 12/17 (70%), Positives = 16/17 (94%) Frame = +2 Query: 2 LSHSLSRYKLKFSPERL 52 LSHSL+RYKLKFS +++ Sbjct: 140 LSHSLARYKLKFSSDKV 156
>NOP5_RAT (Q9QZ86) Nucleolar protein NOP5 (Nucleolar protein 5)| (Nopp140-associated protein) Length = 534 Score = 242 bits (618), Expect(2) = 6e-66 Identities = 119/189 (62%), Positives = 141/189 (74%) Frame = +1 Query: 46 KVDTMIIQAIGLLDDLDKELNTYAMRVREWYGWHFPELTKIVADNIHYAKAVKMMGNRVN 225 KVDTMI+QAI LLDDLDKELN Y MR REWYGWHFPEL KI++DN+ Y K ++ +G+R N Sbjct: 157 KVDTMIVQAISLLDDLDKELNNYIMRCREWYGWHFPELGKIISDNLTYCKCLQKVGDRKN 216 Query: 226 AVNLDFSXXXXXXXXXXXXXXXXXSMGTEVNELDLSNIRELCDQVLALSEYRAQLYDYLK 405 + S SMGTEV+E D+ NI LC QV+ +SEYR QLY+YL+ Sbjct: 217 YASATLSEFLSEEVEAEVKAAAEISMGTEVSEEDICNILHLCTQVIEISEYRTQLYEYLQ 276 Query: 406 SRMNTIAPNLTALVGELVGARLIAHGGSLMNLAKQPGSTIQILGAEKALFRALKTKHATP 585 +RM IAPN+T +VGELVGARLIAH GSL+NLAK ST+QILGAEKALFRALK++ TP Sbjct: 277 NRMMAIAPNVTVMVGELVGARLIAHAGSLLNLAKHAASTVQILGAEKALFRALKSRRDTP 336 Query: 586 KYGLIYHAS 612 KYGLIYHAS Sbjct: 337 KYGLIYHAS 345 Score = 28.5 bits (62), Expect(2) = 6e-66 Identities = 11/17 (64%), Positives = 16/17 (94%) Frame = +2 Query: 2 LSHSLSRYKLKFSPERL 52 L+HSLSRY+LKFS +++ Sbjct: 142 LAHSLSRYRLKFSADKV 158
>NOP5_HUMAN (Q9Y2X3) Nucleolar protein NOP5 (Nucleolar protein 5) (NOP58)| Length = 529 Score = 241 bits (616), Expect(2) = 1e-65 Identities = 119/189 (62%), Positives = 141/189 (74%) Frame = +1 Query: 46 KVDTMIIQAIGLLDDLDKELNTYAMRVREWYGWHFPELTKIVADNIHYAKAVKMMGNRVN 225 KVDTMI+QAI LLDDLDKELN Y MR REWYGWHFPEL KI++DN+ Y K ++ +G+R N Sbjct: 157 KVDTMIVQAISLLDDLDKELNNYIMRCREWYGWHFPELGKIISDNLTYCKCLQKVGDRKN 216 Query: 226 AVNLDFSXXXXXXXXXXXXXXXXXSMGTEVNELDLSNIRELCDQVLALSEYRAQLYDYLK 405 + S SMGTEV+E D+ NI LC QV+ +SEYR QLY+YL+ Sbjct: 217 YASAKLSELLPEEVEAEVKAAAEISMGTEVSEEDICNILHLCTQVIEISEYRTQLYEYLQ 276 Query: 406 SRMNTIAPNLTALVGELVGARLIAHGGSLMNLAKQPGSTIQILGAEKALFRALKTKHATP 585 +RM IAPN+T +VGELVGARLIAH GSL+NLAK ST+QILGAEKALFRALK++ TP Sbjct: 277 NRMMAIAPNVTVMVGELVGARLIAHAGSLLNLAKHAASTVQILGAEKALFRALKSRRDTP 336 Query: 586 KYGLIYHAS 612 KYGLIYHAS Sbjct: 337 KYGLIYHAS 345 Score = 28.5 bits (62), Expect(2) = 1e-65 Identities = 11/17 (64%), Positives = 16/17 (94%) Frame = +2 Query: 2 LSHSLSRYKLKFSPERL 52 L+HSLSRY+LKFS +++ Sbjct: 142 LAHSLSRYRLKFSADKV 158
>NOP58_YEAST (Q12499) Nucleolar protein NOP58 (Nucleolar protein NOP5)| Length = 511 Score = 239 bits (611), Expect(2) = 3e-64 Identities = 121/189 (64%), Positives = 137/189 (72%) Frame = +1 Query: 46 KVDTMIIQAIGLLDDLDKELNTYAMRVREWYGWHFPELTKIVADNIHYAKAVKMMGNRVN 225 KVD MIIQAI LLDDLDKELNTYAMR +EWYGWHFPEL KIV D++ YA+ + MG R Sbjct: 158 KVDVMIIQAIALLDDLDKELNTYAMRCKEWYGWHFPELAKIVTDSVAYARIILTMGIRSK 217 Query: 226 AVNLDFSXXXXXXXXXXXXXXXXXSMGTEVNELDLSNIRELCDQVLALSEYRAQLYDYLK 405 A D S SMGTE+ + DL NI L +Q++ + YR QL +YL Sbjct: 218 ASETDLSEILPEEIEERVKTAAEVSMGTEITQTDLDNINALAEQIVEFAAYREQLSNYLS 277 Query: 406 SRMNTIAPNLTALVGELVGARLIAHGGSLMNLAKQPGSTIQILGAEKALFRALKTKHATP 585 +RM IAPNLT LVGELVGARLIAH GSL++LAK P STIQILGAEKALFRALKTKH TP Sbjct: 278 ARMKAIAPNLTQLVGELVGARLIAHSGSLISLAKSPASTIQILGAEKALFRALKTKHDTP 337 Query: 586 KYGLIYHAS 612 KYGL+YHAS Sbjct: 338 KYGLLYHAS 346 Score = 25.4 bits (54), Expect(2) = 3e-64 Identities = 9/17 (52%), Positives = 15/17 (88%) Frame = +2 Query: 2 LSHSLSRYKLKFSPERL 52 L+HS+ R+KLKFS +++ Sbjct: 143 LAHSIGRHKLKFSADKV 159
>Y5714_ARATH (O04656) Hypothetical protein At5g27140| Length = 435 Score = 229 bits (583), Expect(2) = 4e-61 Identities = 121/185 (65%), Positives = 138/185 (74%) Frame = +1 Query: 55 TMIIQAIGLLDDLDKELNTYAMRVREWYGWHFPELTKIVADNIHYAKAVKMMGNRVNAVN 234 TMII +I LLDDLDKELNTY V E YG HFPEL IV DNI YAK VK+MGNR+NA Sbjct: 115 TMIILSISLLDDLDKELNTYTTSVCELYGLHFPELANIVQDNILYAKVVKLMGNRINAAT 174 Query: 235 LDFSXXXXXXXXXXXXXXXXXSMGTEVNELDLSNIRELCDQVLALSEYRAQLYDYLKSRM 414 LDFS S TEV++LDL +I+ELCDQVL+++E + L D LK++M Sbjct: 175 LDFSEILADEVEAELKEASMVSTRTEVSDLDLMHIQELCDQVLSIAEDKTLLCDDLKNKM 234 Query: 415 NTIAPNLTALVGELVGARLIAHGGSLMNLAKQPGSTIQILGAEKALFRALKTKHATPKYG 594 N IAPNLTALVGELVGARLI+H GSL NL+K P STIQILGAEK L++ALKTK ATPKYG Sbjct: 235 NKIAPNLTALVGELVGARLISHCGSLWNLSKLPWSTIQILGAEKTLYKALKTKQATPKYG 294 Query: 595 LIYHA 609 LIYHA Sbjct: 295 LIYHA 299 Score = 25.8 bits (55), Expect(2) = 4e-61 Identities = 9/19 (47%), Positives = 16/19 (84%) Frame = +2 Query: 2 LSHSLSRYKLKFSPERLIL 58 LSH L+RYKLK + +++++ Sbjct: 85 LSHILARYKLKITSDKVVI 103
>NOP56_MOUSE (Q9D6Z1) Nucleolar protein Nop56 (Nucleolar protein 5A)| Length = 580 Score = 207 bits (528), Expect(2) = 2e-53 Identities = 105/193 (54%), Positives = 137/193 (70%), Gaps = 4/193 (2%) Frame = +1 Query: 46 KVDTMIIQAIGLLDDLDKELNTYAMRVREWYGWHFPELTKIVADNIHYAKAVKMMGNR-- 219 +VD MIIQ+I LLD LDK++NT++MRVREWYG+HFPEL KIV DN Y + + +GNR Sbjct: 163 RVDNMIIQSISLLDQLDKDINTFSMRVREWYGYHFPELVKIVNDNATYCRLAQFIGNRRE 222 Query: 220 VNAVNLDF--SXXXXXXXXXXXXXXXXXSMGTEVNELDLSNIRELCDQVLALSEYRAQLY 393 +N L+ SMG +++ +DL NI +V++LSEYR L+ Sbjct: 223 LNEEKLEKLEEITMDGAKAKAILDASRSSMGMDISAIDLINIESFSSRVVSLSEYRQSLH 282 Query: 394 DYLKSRMNTIAPNLTALVGELVGARLIAHGGSLMNLAKQPGSTIQILGAEKALFRALKTK 573 YL+S+M+ +AP+L+AL+GE VGARLIAH GSL NLAK P ST+QILGAEKALFRALKT+ Sbjct: 283 TYLRSKMSQVAPSLSALIGEAVGARLIAHAGSLTNLAKYPASTVQILGAEKALFRALKTR 342 Query: 574 HATPKYGLIYHAS 612 TPKYGLI+H++ Sbjct: 343 GNTPKYGLIFHST 355 Score = 21.6 bits (44), Expect(2) = 2e-53 Identities = 9/17 (52%), Positives = 12/17 (70%) Frame = +2 Query: 2 LSHSLSRYKLKFSPERL 52 L HS SR K+KF+ R+ Sbjct: 148 LGHSYSRAKVKFNVNRV 164
>NOP56_MACFA (Q95K50) Nucleolar protein Nop56 (Nucleolar protein 5A)| Length = 594 Score = 207 bits (527), Expect(2) = 2e-53 Identities = 104/193 (53%), Positives = 137/193 (70%), Gaps = 4/193 (2%) Frame = +1 Query: 46 KVDTMIIQAIGLLDDLDKELNTYAMRVREWYGWHFPELTKIVADNIHYAKAVKMMGNR-- 219 +VD MIIQ+I LLD LDK++NT++MRVREWYG+HFPEL KI+ DN Y + + +GNR Sbjct: 163 RVDNMIIQSISLLDQLDKDINTFSMRVREWYGYHFPELVKIINDNATYCRLAQFIGNRRE 222 Query: 220 VNAVNLDF--SXXXXXXXXXXXXXXXXXSMGTEVNELDLSNIRELCDQVLALSEYRAQLY 393 +N L+ SMG +++ +DL NI +V++LSEYR L+ Sbjct: 223 LNEEKLEKLEELTMDGAKAKAILDASRSSMGMDISAIDLINIESFSSRVVSLSEYRQSLH 282 Query: 394 DYLKSRMNTIAPNLTALVGELVGARLIAHGGSLMNLAKQPGSTIQILGAEKALFRALKTK 573 YL+S+M+ +AP+L+AL+GE VGARLIAH GSL NLAK P ST+QILGAEKALFRALKT+ Sbjct: 283 TYLRSKMSQVAPSLSALIGEAVGARLIAHAGSLTNLAKYPASTVQILGAEKALFRALKTR 342 Query: 574 HATPKYGLIYHAS 612 TPKYGLI+H++ Sbjct: 343 GNTPKYGLIFHST 355 Score = 21.6 bits (44), Expect(2) = 2e-53 Identities = 9/17 (52%), Positives = 12/17 (70%) Frame = +2 Query: 2 LSHSLSRYKLKFSPERL 52 L HS SR K+KF+ R+ Sbjct: 148 LGHSYSRAKVKFNVNRV 164
>NOP56_PONPY (Q5RA29) Nucleolar protein Nop56 (Nucleolar protein 5A)| Length = 594 Score = 207 bits (526), Expect(2) = 3e-53 Identities = 104/193 (53%), Positives = 137/193 (70%), Gaps = 4/193 (2%) Frame = +1 Query: 46 KVDTMIIQAIGLLDDLDKELNTYAMRVREWYGWHFPELTKIVADNIHYAKAVKMMGNR-- 219 +VD MIIQ+I LLD LDK++NT++MRVREWYG+HFPEL KI+ DN Y + + +GNR Sbjct: 163 RVDNMIIQSISLLDQLDKDINTFSMRVREWYGYHFPELVKIINDNATYCRLAQFIGNRRE 222 Query: 220 VNAVNLDF--SXXXXXXXXXXXXXXXXXSMGTEVNELDLSNIRELCDQVLALSEYRAQLY 393 +N L+ SMG +++ +DL NI +V++LSEYR L+ Sbjct: 223 LNEDKLEKLEELTMDGAKAKAILDASRSSMGMDISAIDLINIESFSSRVVSLSEYRQSLH 282 Query: 394 DYLKSRMNTIAPNLTALVGELVGARLIAHGGSLMNLAKQPGSTIQILGAEKALFRALKTK 573 YL+S+M+ +AP+L+AL+GE VGARLIAH GSL NLAK P ST+QILGAEKALFRALKT+ Sbjct: 283 TYLRSKMSQVAPSLSALIGEAVGARLIAHAGSLTNLAKYPASTVQILGAEKALFRALKTR 342 Query: 574 HATPKYGLIYHAS 612 TPKYGLI+H++ Sbjct: 343 GNTPKYGLIFHST 355 Score = 21.6 bits (44), Expect(2) = 3e-53 Identities = 9/17 (52%), Positives = 12/17 (70%) Frame = +2 Query: 2 LSHSLSRYKLKFSPERL 52 L HS SR K+KF+ R+ Sbjct: 148 LGHSYSRTKVKFNVNRV 164
>NOP56_HUMAN (O00567) Nucleolar protein Nop56 (Nucleolar protein 5A)| Length = 594 Score = 207 bits (526), Expect(2) = 3e-53 Identities = 104/193 (53%), Positives = 137/193 (70%), Gaps = 4/193 (2%) Frame = +1 Query: 46 KVDTMIIQAIGLLDDLDKELNTYAMRVREWYGWHFPELTKIVADNIHYAKAVKMMGNR-- 219 +VD MIIQ+I LLD LDK++NT++MRVREWYG+HFPEL KI+ DN Y + + +GNR Sbjct: 163 RVDNMIIQSISLLDQLDKDINTFSMRVREWYGYHFPELVKIINDNATYCRLAQFIGNRRE 222 Query: 220 VNAVNLDF--SXXXXXXXXXXXXXXXXXSMGTEVNELDLSNIRELCDQVLALSEYRAQLY 393 +N L+ SMG +++ +DL NI +V++LSEYR L+ Sbjct: 223 LNEDKLEKLEELTMDGAKAKAILDASRSSMGMDISAIDLINIESFSSRVVSLSEYRQSLH 282 Query: 394 DYLKSRMNTIAPNLTALVGELVGARLIAHGGSLMNLAKQPGSTIQILGAEKALFRALKTK 573 YL+S+M+ +AP+L+AL+GE VGARLIAH GSL NLAK P ST+QILGAEKALFRALKT+ Sbjct: 283 TYLRSKMSQVAPSLSALIGEAVGARLIAHAGSLTNLAKYPASTVQILGAEKALFRALKTR 342 Query: 574 HATPKYGLIYHAS 612 TPKYGLI+H++ Sbjct: 343 GNTPKYGLIFHST 355 Score = 21.6 bits (44), Expect(2) = 3e-53 Identities = 9/17 (52%), Positives = 12/17 (70%) Frame = +2 Query: 2 LSHSLSRYKLKFSPERL 52 L HS SR K+KF+ R+ Sbjct: 148 LGHSYSRAKVKFNVNRV 164
>SIK1_YEAST (Q12460) Protein SIK1 (Nucleolar protein NOP56)| Length = 504 Score = 202 bits (514), Expect(2) = 1e-51 Identities = 102/193 (52%), Positives = 133/193 (68%), Gaps = 5/193 (2%) Frame = +1 Query: 46 KVDTMIIQAIGLLDDLDKELNTYAMRVREWYGWHFPELTKIVADNIHYAKAVKMMGNRVN 225 K D IIQAI LLD LDK++NT+AMRV+EWYGWHFPEL K+V DN +AK V + ++ + Sbjct: 169 KNDNHIIQAIALLDQLDKDINTFAMRVKEWYGWHFPELAKLVPDNYTFAKLVLFIKDKAS 228 Query: 226 AVN-----LDFSXXXXXXXXXXXXXXXXXSMGTEVNELDLSNIRELCDQVLALSEYRAQL 390 + L SMG +++E D+ N+ +V +L++YR QL Sbjct: 229 LNDDSLHDLAALLNEDSGIAQRVIDNARISMGQDISETDMENVCVFAQRVASLADYRRQL 288 Query: 391 YDYLKSRMNTIAPNLTALVGELVGARLIAHGGSLMNLAKQPGSTIQILGAEKALFRALKT 570 YDYL +M+T+APNL+ L+GE++GARLI+H GSL NL+KQ ST+QILGAEKALFRALKT Sbjct: 289 YDYLCEKMHTVAPNLSELIGEVIGARLISHAGSLTNLSKQAASTVQILGAEKALFRALKT 348 Query: 571 KHATPKYGLIYHA 609 K TPKYGLIYH+ Sbjct: 349 KGNTPKYGLIYHS 361 Score = 20.8 bits (42), Expect(2) = 1e-51 Identities = 8/16 (50%), Positives = 12/16 (75%) Frame = +2 Query: 2 LSHSLSRYKLKFSPER 49 L H+ SR K+KFS ++ Sbjct: 154 LGHAYSRAKVKFSVQK 169
>YZVL_CAEEL (Q21276) Hypothetical protein K07C5.4 in chromosome V| Length = 486 Score = 189 bits (479), Expect(2) = 1e-47 Identities = 95/196 (48%), Positives = 131/196 (66%), Gaps = 7/196 (3%) Frame = +1 Query: 46 KVDTMIIQAIGLLDDLDKELNTYAMRVREWYGWHFPELTKIVADNIHYAK-AVKMMGNRV 222 +VD M+IQ+I LLD LDK++N + MR+REWY +H+PEL ++ D Y++ AV ++ Sbjct: 166 RVDNMVIQSIALLDQLDKDINLFGMRIREWYSYHYPELFRLAPDQYKYSRLAVAILDRNK 225 Query: 223 NAVNLDFSXXXX------XXXXXXXXXXXXXSMGTEVNELDLSNIRELCDQVLALSEYRA 384 A N + SMG ++++LDL NI+ +V +L EYR Sbjct: 226 MAENENLENEILEILDNDSEKTAQIIEAARTSMGMDISDLDLENIKRFAARVSSLMEYRQ 285 Query: 385 QLYDYLKSRMNTIAPNLTALVGELVGARLIAHGGSLMNLAKQPGSTIQILGAEKALFRAL 564 QL++Y+K RM+ AP+L+AL+GE VGARLI+H GSL NLAK P ST+QILGAEKALFRAL Sbjct: 286 QLHEYIKDRMDHCAPSLSALIGEQVGARLISHAGSLTNLAKYPASTVQILGAEKALFRAL 345 Query: 565 KTKHATPKYGLIYHAS 612 KT+ TPKYGL++H+S Sbjct: 346 KTRSNTPKYGLLFHSS 361 Score = 21.2 bits (43), Expect(2) = 1e-47 Identities = 9/17 (52%), Positives = 11/17 (64%) Frame = +2 Query: 2 LSHSLSRYKLKFSPERL 52 L HS SR K+KF R+ Sbjct: 151 LGHSYSRSKVKFDVHRV 167
>Y694_METJA (Q58105) Hypothetical protein MJ0694| Length = 414 Score = 137 bits (344), Expect = 3e-32 Identities = 76/185 (41%), Positives = 101/185 (54%) Frame = +1 Query: 52 DTMIIQAIGLLDDLDKELNTYAMRVREWYGWHFPELTKIVADNIHYAKAVKMMGNRVNAV 231 D +IIQ + DLDK LN + R+REWY +FPEL +V + YA + +G R N Sbjct: 123 DKIIIQVAEAISDLDKTLNLLSERLREWYSLYFPELDHLVNKHEVYANLITKLGKRKNFT 182 Query: 232 NLDFSXXXXXXXXXXXXXXXXXSMGTEVNELDLSNIRELCDQVLALSEYRAQLYDYLKSR 411 SMG E+ + DL I + +++ L E R +LY+YL+ Sbjct: 183 KSQLKKILPSKLAGKIAEAAKNSMGGELEDYDLDVIVKFAEEINHLYEKRKELYNYLEKL 242 Query: 412 MNTIAPNLTALVGELVGARLIAHGGSLMNLAKQPGSTIQILGAEKALFRALKTKHATPKY 591 MN APN+T L G +GARLI G L LAK P STIQ+LGAEKALF L+ PK+ Sbjct: 243 MNEEAPNITKLAGVSLGARLIGLAGGLEKLAKMPASTIQVLGAEKALFAHLRMGVEPPKH 302 Query: 592 GLIYH 606 G+IY+ Sbjct: 303 GIIYN 307
>PRP31_XENTR (Q6NVP6) U4/U6 small nuclear ribonucleoprotein Prp31 (Pre-mRNA| processing factor 31) Length = 498 Score = 107 bits (267), Expect = 3e-23 Identities = 54/186 (29%), Positives = 95/186 (51%), Gaps = 2/186 (1%) Frame = +1 Query: 58 MIIQAIGLLDDLDKELNTYAMRVREWYGWHFPELTKIVADNIHYAKAVKMMGNRVNAV-- 231 +I+ A L +++ ELN +R+ Y FPEL +V + + Y + VK +GN ++ Sbjct: 91 VIVDANNLTVEIENELNIIHKFIRDKYSKRFPELESLVPNALDYIRTVKELGNNLDKCKN 150 Query: 232 NLDFSXXXXXXXXXXXXXXXXXSMGTEVNELDLSNIRELCDQVLALSEYRAQLYDYLKSR 411 N + + G ++ + +L I E CD L L++ + ++Y+Y++SR Sbjct: 151 NENLQQILTNATIMVVSVTASTTQGQQLTDEELERIEEACDMALELNQSKHRIYEYVESR 210 Query: 412 MNTIAPNLTALVGELVGARLIAHGGSLMNLAKQPGSTIQILGAEKALFRALKTKHATPKY 591 M+ IAPNL+ +VG A+++ G L NL+K P + +LGA++ + P Sbjct: 211 MSFIAPNLSIIVGASTAAKIMGIAGGLTNLSKMPACNVMLLGAQRKTLSGFSSTSVLPHT 270 Query: 592 GLIYHA 609 G IYH+ Sbjct: 271 GYIYHS 276
>PRP31_XENLA (Q5U5C5) U4/U6 small nuclear ribonucleoprotein Prp31 (Pre-mRNA| processing factor 31) Length = 498 Score = 107 bits (267), Expect = 3e-23 Identities = 54/186 (29%), Positives = 95/186 (51%), Gaps = 2/186 (1%) Frame = +1 Query: 58 MIIQAIGLLDDLDKELNTYAMRVREWYGWHFPELTKIVADNIHYAKAVKMMGNRVNAV-- 231 +I+ A L +++ ELN +R+ Y FPEL +V + + Y + VK +GN ++ Sbjct: 91 VIVDANNLTVEIENELNIIHKFIRDKYSKRFPELESLVPNALDYIRTVKELGNNLDKCKN 150 Query: 232 NLDFSXXXXXXXXXXXXXXXXXSMGTEVNELDLSNIRELCDQVLALSEYRAQLYDYLKSR 411 N + + G ++ + +L I E CD L L++ + ++Y+Y++SR Sbjct: 151 NENLQQILTNATIMVVSVTASTTQGQQLTDEELERIEEACDMALELNQSKHRIYEYVESR 210 Query: 412 MNTIAPNLTALVGELVGARLIAHGGSLMNLAKQPGSTIQILGAEKALFRALKTKHATPKY 591 M+ IAPNL+ +VG A+++ G L NL+K P + +LGA++ + P Sbjct: 211 MSFIAPNLSIIVGASTAAKIMGIAGGLTNLSKMPACNVMLLGAQRKTLTGFSSTSVLPHT 270 Query: 592 GLIYHA 609 G IYH+ Sbjct: 271 GYIYHS 276
>PRP31_HUMAN (Q8WWY3) U4/U6 small nuclear ribonucleoprotein Prp31 (Pre-mRNA| processing factor 31) (U4/U6 snRNP 61 kDa protein) (hPrp31) (Protein 61K) (Serologically defined breast cancer antigen NY-BR-99) Length = 499 Score = 106 bits (265), Expect = 5e-23 Identities = 54/186 (29%), Positives = 95/186 (51%), Gaps = 2/186 (1%) Frame = +1 Query: 58 MIIQAIGLLDDLDKELNTYAMRVREWYGWHFPELTKIVADNIHYAKAVKMMGNRVNAV-- 231 +I+ A L +++ ELN +R+ Y FPEL +V + + Y + VK +GN ++ Sbjct: 92 VIVDANNLTVEIENELNIIHKFIRDKYSKRFPELESLVPNALDYIRTVKELGNSLDKCKN 151 Query: 232 NLDFSXXXXXXXXXXXXXXXXXSMGTEVNELDLSNIRELCDQVLALSEYRAQLYDYLKSR 411 N + + G +++E +L + E CD L L+ + ++Y+Y++SR Sbjct: 152 NENLQQILTNATIMVVSVTASTTQGQQLSEEELERLEEACDMALELNASKHRIYEYVESR 211 Query: 412 MNTIAPNLTALVGELVGARLIAHGGSLMNLAKQPGSTIQILGAEKALFRALKTKHATPKY 591 M+ IAPNL+ ++G A+++ G L NL+K P I +LGA++ + P Sbjct: 212 MSFIAPNLSIIIGASTAAKIMGVAGGLTNLSKMPACNIMLLGAQRKTLSGFSSTSVLPHT 271 Query: 592 GLIYHA 609 G IYH+ Sbjct: 272 GYIYHS 277
>PRP31_BRARE (Q7SXM7) U4/U6 small nuclear ribonucleoprotein Prp31 (Pre-mRNA| processing factor 31) Length = 508 Score = 106 bits (265), Expect = 5e-23 Identities = 56/185 (30%), Positives = 92/185 (49%), Gaps = 2/185 (1%) Frame = +1 Query: 58 MIIQAIGLLDDLDKELNTYAMRVREWYGWHFPELTKIVADNIHYAKAVKMMGNRVNAV-- 231 +I+ A L ++D ELN VR+ Y FPEL +V + + Y + VK +GN + Sbjct: 103 LIVAANNLTVEIDNELNIIHKFVRDKYSKRFPELESLVPNALDYIRTVKELGNNLEKCKN 162 Query: 232 NLDFSXXXXXXXXXXXXXXXXXSMGTEVNELDLSNIRELCDQVLALSEYRAQLYDYLKSR 411 N + GT + + +L + E CD L L++ + ++Y+Y++SR Sbjct: 163 NETLQQILTNATIMVVSVTASTTQGTMLGDDELQRLEEACDMALELNQSKHRIYEYVESR 222 Query: 412 MNTIAPNLTALVGELVGARLIAHGGSLMNLAKQPGSTIQILGAEKALFRALKTKHATPKY 591 M+ IAPNL+ +VG A+++ G L NL+K P + +LGA++ + P Sbjct: 223 MSFIAPNLSIIVGASTAAKIMGVAGGLTNLSKMPACNLMLLGAQRRTLSGFSSTSLLPHT 282 Query: 592 GLIYH 606 G IYH Sbjct: 283 GYIYH 287
>PRP31_MOUSE (Q8CCF0) U4/U6 small nuclear ribonucleoprotein Prp31 (Pre-mRNA| processing factor 31) (U4/U6 snRNP 61 kDa protein) (Protein 61K) Length = 499 Score = 105 bits (262), Expect = 1e-22 Identities = 53/186 (28%), Positives = 95/186 (51%), Gaps = 2/186 (1%) Frame = +1 Query: 58 MIIQAIGLLDDLDKELNTYAMRVREWYGWHFPELTKIVADNIHYAKAVKMMGNRVNAV-- 231 +I+ A L +++ ELN +R+ Y FPEL +V + + Y + VK +GN ++ Sbjct: 92 VIVDANNLTVEIENELNIIHKFIRDKYSKRFPELESLVPNALDYIRTVKELGNSLDKCKN 151 Query: 232 NLDFSXXXXXXXXXXXXXXXXXSMGTEVNELDLSNIRELCDQVLALSEYRAQLYDYLKSR 411 N + + G ++++ +L + E CD L L+ + ++Y+Y++SR Sbjct: 152 NENLQQILTNATIMVVSVTASTTQGQQLSDEELERLEEACDMALELNASKHRIYEYVESR 211 Query: 412 MNTIAPNLTALVGELVGARLIAHGGSLMNLAKQPGSTIQILGAEKALFRALKTKHATPKY 591 M+ IAPNL+ ++G A+++ G L NL+K P I +LGA++ + P Sbjct: 212 MSFIAPNLSIIIGASTAAKIMGVAGGLTNLSKMPACNIMLLGAQRKTLSGFSSTSVLPHT 271 Query: 592 GLIYHA 609 G IYH+ Sbjct: 272 GYIYHS 277
>PRP31_SCHPO (O42904) Pre-mRNA-splicing factor 31| Length = 518 Score = 83.2 bits (204), Expect = 6e-16 Identities = 45/182 (24%), Positives = 84/182 (46%) Frame = +1 Query: 58 MIIQAIGLLDDLDKELNTYAMRVREWYGWHFPELTKIVADNIHYAKAVKMMGNRVNAVNL 237 +I+ + + ++D E+ V+EWY FPEL+ +V + Y K V + N ++ Sbjct: 119 LIVDSNSIAMEIDDEILRLHRLVKEWYHDRFPELSSLVLNAFDYCKTVSSLLNDLDNSKT 178 Query: 238 DFSXXXXXXXXXXXXXXXXXSMGTEVNELDLSNIRELCDQVLALSEYRAQLYDYLKSRMN 417 S ++G + + + N++ C+ + L E + ++ +Y++SR++ Sbjct: 179 KLS-FLPSATVMVIATTATTTVGKPLPDEMIKNVKNCCEAIQQLGEEKQKIIEYVQSRIS 237 Query: 418 TIAPNLTALVGELVGARLIAHGGSLMNLAKQPGSTIQILGAEKALFRALKTKHATPKYGL 597 +APNL+A+VG A LI G L L K P + LG + + + YG Sbjct: 238 VVAPNLSAVVGSTTAANLIGIAGGLTRLGKFPACNLPALGKRRLTTIGINNPAVSGDYGF 297 Query: 598 IY 603 +Y Sbjct: 298 LY 299
>PRP31_YEAST (P49704) Pre-mRNA-splicing factor 31| Length = 494 Score = 54.7 bits (130), Expect = 2e-07 Identities = 40/156 (25%), Positives = 67/156 (42%), Gaps = 11/156 (7%) Frame = +1 Query: 136 YGWHFPELTKIVADNIHYAKAVKMMGNRVNAVN----LDFSXXXXXXXXXXXXXXXXXSM 303 Y FPEL+ ++ + Y+K + ++ N + N L F SM Sbjct: 120 YSRRFPELSSLIPSPLQYSKVISILENENYSKNESDELFFHLENKAKLTREQILVLTMSM 179 Query: 304 GTEVNELDLSNIRELCDQVLALSEYRAQLY-------DYLKSRMNTIAPNLTALVGELVG 462 T + +I+ Q+L + L+ Y+ S+++ IAPN+ LVG + Sbjct: 180 KTSFKNKEPLDIKTRT-QILEANSILENLWKLQEDIGQYIASKISIIAPNVCFLVGPEIA 238 Query: 463 ARLIAHGGSLMNLAKQPGSTIQILGAEKALFRALKT 570 A+LIAH G ++ ++ P I +G K L L T Sbjct: 239 AQLIAHAGGVLEFSRIPSCNIASIGKNKHLSHELHT 274
>NSDHL_MOUSE (Q9R1J0) Sterol-4-alpha-carboxylate 3-dehydrogenase,| decarboxylating (EC 1.1.1.170) Length = 362 Score = 31.2 bits (69), Expect = 2.5 Identities = 22/66 (33%), Positives = 32/66 (48%), Gaps = 2/66 (3%) Frame = +1 Query: 52 DTMIIQAIGLLDDLDKELN--TYAMRVREWYGWHFPELTKIVADNIHYAKAVKMMGNRVN 225 +T I+Q +LD D + N T A+R +G P+L I+ D K M+GN N Sbjct: 163 ETKILQERAVLDANDPKKNFLTAAIRPHGIFGPRDPQLVPILIDAARKGKMKFMIGNGEN 222 Query: 226 AVNLDF 243 V+ F Sbjct: 223 LVDFTF 228
>TCO1_PIG (P17630) Transcobalamin-1 precursor (Transcobalamin I) (TCI) (TC I)| (Haptocorrin) (R protein) (Cobalophilin) (Fragment) Length = 416 Score = 30.4 bits (67), Expect = 4.2 Identities = 14/28 (50%), Positives = 18/28 (64%) Frame = -2 Query: 147 VPTVPFTDPHSISVKLLVKIIQQANCLN 64 VP VP P +ISV VKI + +NC+N Sbjct: 317 VPVVPTLSPENISVIYCVKINEISNCIN 344
>KCNF1_HUMAN (Q9H3M0) Potassium voltage-gated channel subfamily F member 1| (Voltage-gated potassium channel subunit Kv5.1) (kH1) Length = 494 Score = 30.0 bits (66), Expect = 5.6 Identities = 16/44 (36%), Positives = 26/44 (59%), Gaps = 1/44 (2%) Frame = -2 Query: 399 IVIELGSVLRKSQ-DLITQFPDVREVKLIDFCSHGNYSCLLQLC 271 IV+ +G V + DL++Q+P+ R +LI+ C G Y + LC Sbjct: 25 IVVNVGGVRQVLYGDLLSQYPETRLAELIN-CLAGGYDTIFSLC 67
>ENV2_DROME (P20829) Retrovirus-related Env polyprotein from transposon 297| Length = 471 Score = 29.6 bits (65), Expect = 7.2 Identities = 21/66 (31%), Positives = 32/66 (48%) Frame = -2 Query: 246 REVKVHCINTIAHHLHSFSIMDIICNNFRELGKVPTVPFTDPHSISVKLLVKIIQQANCL 67 +EVK C+ I HL+ ICN F+ + + + +P++I L + I NC Sbjct: 284 KEVKNECVTNIIKHLNP------ICN-FKPVHTNEIIKYIEPNTIVTWNLTQTILNQNCQ 336 Query: 66 NDHSIN 49 N SIN Sbjct: 337 N--SIN 340
>SYL_BORGA (Q662B4) Leucyl-tRNA synthetase (EC 6.1.1.4) (Leucine--tRNA ligase)| (LeuRS) Length = 840 Score = 29.3 bits (64), Expect = 9.5 Identities = 16/44 (36%), Positives = 23/44 (52%) Frame = +1 Query: 64 IQAIGLLDDLDKELNTYAMRVREWYGWHFPELTKIVADNIHYAK 195 I+A+G D D+E+ T+ +W W F EL K + YAK Sbjct: 115 IKALGFAYDWDREIRTHDENYYKWTQWIFLELYK---KGLAYAK 155
>SYL_MYCPU (Q98RB6) Leucyl-tRNA synthetase (EC 6.1.1.4) (Leucine--tRNA ligase)| (LeuRS) Length = 807 Score = 29.3 bits (64), Expect = 9.5 Identities = 15/34 (44%), Positives = 20/34 (58%) Frame = +1 Query: 64 IQAIGLLDDLDKELNTYAMRVREWYGWHFPELTK 165 I+++GL D DKE+NT + E W F EL K Sbjct: 109 IKSLGLSYDFDKEVNTTDPKFYEQTQWIFKELYK 142 Database: uniprot_sprot.fasta Posted date: May 25, 2006 5:36 PM Number of letters in database: 80,573,946 Number of sequences in database: 219,361 Lambda K H 0.318 0.135 0.401 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 79,789,372 Number of Sequences: 219361 Number of extensions: 1455492 Number of successful extensions: 3916 Number of sequences better than 10.0: 25 Number of HSP's better than 10.0 without gapping: 3800 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 3903 length of database: 80,573,946 effective HSP length: 107 effective length of database: 57,102,319 effective search space used: 5481822624 frameshift window, decay const: 50, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits)
