>DSPP_HUMAN (Q9NZW4) Dentin sialophosphoprotein precursor [Contains: Dentin|
            phosphoprotein (Dentin phosphophoryn) (DPP); Dentin
            sialoprotein (DSP)]
          Length = 1253

 Score = 38.5 bits (88), Expect = 0.015
 Identities = 34/151 (22%), Positives = 65/151 (43%)
 Frame = +2

Query: 128  AETNVRIGAGNSVAEFTGSSLDKNSVESSELSGRSDIGVSIDEGFDDWQEFAEGGNQGIL 307
            ++++ R  + NS ++ + SS   NS +SS+ S  SD   S +         +   +    
Sbjct: 853  SDSSNRSDSSNS-SDSSDSSDSSNSSDSSDSSDSSDSNESSNSSDSSDSSNSSDSDSSDS 911

Query: 308  PNVGEHTEMPSESDSSQIKGMDPLSVRSMESPNNVSGDSDDWQDFAQSSAQGDSAKLVEX 487
             N  + ++  + SDSS+       S  S  S ++ S DS D  + + SS  GDS+   + 
Sbjct: 912  SNSSDSSDSSNSSDSSESSNSSDNSNSSDSSNSSDSSDSSDSSNSSDSSNSGDSSNSSDS 971

Query: 488  XXXXXXXXXXXNPVAETSISLEHSLEAHAVD 580
                       +  +++S S + S  + + D
Sbjct: 972  SDSNSSDSSDSSNSSDSSDSSDSSDSSDSSD 1002



 Score = 33.5 bits (75), Expect = 0.48
 Identities = 28/97 (28%), Positives = 40/97 (41%)
 Frame = +2

Query: 182  SSLDKNSVESSELSGRSDIGVSIDEGFDDWQEFAEGGNQGILPNVGEHTEMPSESDSSQI 361
            SS   +S +SS  S  SD   S D    D    ++  N     +  + +     SDSS  
Sbjct: 826  SSNSSDSSDSSNSSDSSDSSDSSDSSDSDSSNRSDSSNSSDSSDSSDSSNSSDSSDSSDS 885

Query: 362  KGMDPLSVRSMESPNNVSGDSDDWQDFAQSSAQGDSA 472
               +  S  S  S ++ S DSD   D + SS   DS+
Sbjct: 886  SDSNESSNSSDSSDSSNSSDSDS-SDSSNSSDSSDSS 921



 Score = 32.7 bits (73), Expect = 0.81
 Identities = 29/110 (26%), Positives = 49/110 (44%), Gaps = 3/110 (2%)
 Frame = +2

Query: 152  AGNSVAEFTGSSLDKNSVESSELSGRSDIGVSIDEG-FDDWQEFAEGGNQGILPNVGEHT 328
            + +S ++ + SS   +S +SS+ S  SD   S D     D  + ++  +     N  +  
Sbjct: 727  SNSSDSDSSNSSDSSDSSDSSDSSNSSDSSDSSDSSNSSDSSDSSDSSDSSDSSNSSDSN 786

Query: 329  EMPSESDSSQIKGMDPLSVRSMESPNNVSGDSD--DWQDFAQSSAQGDSA 472
            +  + SDSS        S  S  S ++ S DSD  +  D + SS   DS+
Sbjct: 787  DSSNSSDSSDSSNSSDSSNSSDSSDSSDSSDSDSSNSSDSSNSSDSSDSS 836



 Score = 29.3 bits (64), Expect = 9.0
 Identities = 28/105 (26%), Positives = 45/105 (42%)
 Frame = +2

Query: 158 NSVAEFTGSSLDKNSVESSELSGRSDIGVSIDEGFDDWQEFAEGGNQGILPNVGEHTEMP 337
           NS +   G++ + ++ +S    G+SD   S D    D    ++  +     +    +   
Sbjct: 523 NSDSNGNGNNGNDDNDKSDSGKGKSD---SSDSDSSDSSNSSDSSDSS--DSDSSDSNSS 577

Query: 338 SESDSSQIKGMDPLSVRSMESPNNVSGDSDDWQDFAQSSAQGDSA 472
           S+SDSS     D     S +S N  S DS D  D + SS   DS+
Sbjct: 578 SDSDSSDSDSSDSSDSDSSDSSN--SSDSSDSSDSSDSSDSSDSS 620

>POB1_SCHPO (O74653) Protein pob1 (BOI protein homolog)|
          Length = 871

 Score = 35.0 bits (79), Expect = 0.16
 Identities = 33/100 (33%), Positives = 48/100 (48%), Gaps = 5/100 (5%)
 Frame = +2

Query: 194 KNSVESSELSGRSDIGVSIDEGFDD--WQEFAEGGNQGILPNVGEHTEMPSE--SDSSQI 361
           K+S E   + GR  + + +DE F D  W+   E GN+GI P    H E+ S+  SDSS  
Sbjct: 16  KSSDELPLVEGRKYLLIKMDEEFGDGWWEGEDEQGNRGIFP--ASHVELISDERSDSSDS 73

Query: 362 -KGMDPLSVRSMESPNNVSGDSDDWQDFAQSSAQGDSAKL 478
            +G +  S+ + E    V+  S        S +  DS KL
Sbjct: 74  RRGKEDFSISTAE----VTRSSLSSSRSTSSRSDKDSEKL 109

>SMRCD_HUMAN (Q9H4L7) SWI/SNF-related matrix-associated actin-dependent|
           regulator of chromatin subfamily A containing DEAD/H box
           1 (EC 3.6.1.-) (ATP-dependent helicase 1) (hHEL1)
          Length = 1026

 Score = 35.0 bits (79), Expect = 0.16
 Identities = 26/89 (29%), Positives = 41/89 (46%), Gaps = 13/89 (14%)
 Frame = +2

Query: 194 KNSVESSELSGRSDIGVSIDEGFDDWQEFAEGGNQGIL------PNVGEHTEMP--SESD 349
           K  VE SE    SD+G S+DE +   +E  E G +G +       ++GE T +P  S+  
Sbjct: 352 KRVVEDSEYDSGSDVGSSLDEDYSSGEEVMEDGYKGKILHFLQDASIGELTLIPQCSQKK 411

Query: 350 SSQIKGMDPLS-----VRSMESPNNVSGD 421
           + +I  + P +        M   N +S D
Sbjct: 412 AQKITELRPFNSWEALFTKMSKTNGLSED 440

>OTC_TRAHI (P78605) Ornithine carbamoyltransferase, mitochondrial precursor|
           (EC 2.1.3.3) (OTCase) (Ornithine transcarbamylase)
          Length = 375

 Score = 32.7 bits (73), Expect = 0.81
 Identities = 21/66 (31%), Positives = 32/66 (48%)
 Frame = +2

Query: 224 GRSDIGVSIDEGFDDWQEFAEGGNQGILPNVGEHTEMPSESDSSQIKGMDPLSVRSMESP 403
           GR DI + ++E   D      G  QGI   VG+H+E+   +  S +  ++ LS  S+  P
Sbjct: 100 GREDIQLGVNETVPDSARVIGGMCQGIFARVGDHSEIEELARYSPVPVLNALS--SLWHP 157

Query: 404 NNVSGD 421
             V  D
Sbjct: 158 TQVLAD 163

>GPH_VIBPA (Q87L12) Phosphoglycolate phosphatase (EC 3.1.3.18) (PGPase) (PGP)|
          Length = 228

 Score = 32.3 bits (72), Expect = 1.1
 Identities = 25/73 (34%), Positives = 37/73 (50%), Gaps = 2/73 (2%)
 Frame = +2

Query: 119 PAIAETNVRIGAGNSVAEFTGSSLDKNSVESSELSGRSDIGVSIDEGFDDWQEFAEGGNQ 298
           PA++E  VR   GN      G +L ++   SS+LS   D+     E FDD+  +A+ G+Q
Sbjct: 38  PAVSEEQVRDYVGNGADVLIGRALSQSMTISSDLS--EDLRAKGRELFDDF--YAQSGHQ 93

Query: 299 --GILPNVGEHTE 331
              + P V E  E
Sbjct: 94  LSHLYPTVKETLE 106

>PUR7_LEIXX (Q6ACE5) Phosphoribosylaminoimidazole-succinocarboxamide synthase|
           (EC 6.3.2.6) (SAICAR synthetase)
          Length = 299

 Score = 31.6 bits (70), Expect = 1.8
 Identities = 13/25 (52%), Positives = 16/25 (64%)
 Frame = -2

Query: 563 LKNVLEKWMFLQLDFPNHLLLDHTM 489
           L   L  W F +LD PNHL+ DHT+
Sbjct: 58  LLTALSLWWFDRLDAPNHLIPDHTL 82

>YK02_SCHPO (Q9HDY9) Hypothetical serine/threonine-rich protein P11E10.02c|
           precursor
          Length = 1082

 Score = 31.2 bits (69), Expect = 2.4
 Identities = 26/73 (35%), Positives = 38/73 (52%)
 Frame = -1

Query: 348 SLSEGISVCSPTFGSMP*FPPSANSCQSSKPSSILTPMSLLPDNSLLSTEFLSREDPVNS 169
           ++S  IS  S +  S P F PSA+   SSK +S ++ +S  P +S  ST  +     VNS
Sbjct: 151 AVSSQISTLSMSPSSTPVFSPSASV--SSKVASSVSYVSSEPSDSSSSTNTVILTTSVNS 208

Query: 168 ATLFPAPILTLVS 130
             +  +  LT VS
Sbjct: 209 PAVSSSETLTSVS 221

>YM76_YEAST (Q05029) Hypothetical 82.0 kDa protein in RNA1-RNT1 intergenic|
           region
          Length = 724

 Score = 30.8 bits (68), Expect = 3.1
 Identities = 21/83 (25%), Positives = 36/83 (43%)
 Frame = +2

Query: 302 ILPNVGEHTEMPSESDSSQIKGMDPLSVRSMESPNNVSGDSDDWQDFAQSSAQGDSAKLV 481
           I+ + GE +++PS +++S  +    L+V  + +   +SG   D      + A G+S  LV
Sbjct: 162 IINSDGEQSQLPSVAEASSGRNSQDLNVNMIWAETFMSGIVRDIMIMKDNRADGESQNLV 221

Query: 482 EXXXXXXXXXXXXNPVAETSISL 550
           E              VA   I L
Sbjct: 222 ETLIFNPFTSGELEDVANNFIKL 244

>RPOA_CAUCR (Q9A8S9) DNA-directed RNA polymerase alpha chain (EC 2.7.7.6) (RNAP|
           alpha subunit) (Transcriptase alpha chain) (RNA
           polymerase alpha subunit)
          Length = 338

 Score = 30.4 bits (67), Expect = 4.0
 Identities = 27/73 (36%), Positives = 41/73 (56%), Gaps = 1/73 (1%)
 Frame = +3

Query: 135 LTLGSVLETVLLSSL-GPPLTRIQLRAVNCLEGVTLESVLMKVLMTGKNLQKVEIRAYYQ 311
           +TLG+ L  VLLSSL G  +T IQ+  V   E  +LE V   V+    N++++ +R +  
Sbjct: 40  VTLGNALRRVLLSSLQGAAVTAIQIDGV-VHEFSSLEGVREDVVDIVLNIKQLAVRMH-- 96

Query: 312 MSESIQRCLQRAT 350
            +E  +R   RAT
Sbjct: 97  -AEGPKRMTLRAT 108

>YOPN_YERPE (P68640) Outer membrane protein yopN (Yop4b) (LcrE)|
          Length = 292

 Score = 30.4 bits (67), Expect = 4.0
 Identities = 20/71 (28%), Positives = 33/71 (46%)
 Frame = +2

Query: 98  LFIQKAVPAIAETNVRIGAGNSVAEFTGSSLDKNSVESSELSGRSDIGVSIDEGFDDWQE 277
           LF+QKA+ A  ++           + +GS  +K  +  S+L    + G   D+    WQ 
Sbjct: 232 LFLQKALSADLQS-----------QQSGSGREKLGIVISDLQKLKEFGSVSDQVKGFWQF 280

Query: 278 FAEGGNQGILP 310
           F+EG   G+ P
Sbjct: 281 FSEGKTNGVRP 291

>RPOA_LACLA (Q9CDY3) DNA-directed RNA polymerase alpha chain (EC 2.7.7.6) (RNAP|
           alpha subunit) (Transcriptase alpha chain) (RNA
           polymerase alpha subunit)
          Length = 312

 Score = 30.0 bits (66), Expect = 5.3
 Identities = 22/65 (33%), Positives = 35/65 (53%), Gaps = 1/65 (1%)
 Frame = +3

Query: 138 TLGSVLETVLLSSL-GPPLTRIQLRAVNCLEGVTLESVLMKVLMTGKNLQKVEIRAYYQM 314
           TLG+ L  VLLSSL G  +T IQ+  V   E  T+  V   V+     ++ + I++Y + 
Sbjct: 33  TLGNSLRRVLLSSLPGAAVTSIQIEGVQ-HEFATIPGVREDVIQIVLAVKGIAIKSYVES 91

Query: 315 SESIQ 329
            + I+
Sbjct: 92  EKQIE 96

>YIQ9_YEAST (P40442) Hypothetical protein YIL169C precursor|
          Length = 995

 Score = 30.0 bits (66), Expect = 5.3
 Identities = 15/66 (22%), Positives = 30/66 (45%)
 Frame = +2

Query: 158 NSVAEFTGSSLDKNSVESSELSGRSDIGVSIDEGFDDWQEFAEGGNQGILPNVGEHTEMP 337
           +SV++ + S+ D +S  S   S  SD+  S+ +        +  G+Q +    G  +  P
Sbjct: 205 SSVSQSSSSASDVSSSVSQSASSTSDVSSSVSQSASSTSGVSSSGSQSVSSASGSSSSFP 264

Query: 338 SESDSS 355
             + S+
Sbjct: 265 QSTSSA 270

>SYR_DEIRA (Q9RRC4) Arginyl-tRNA synthetase (EC 6.1.1.19) (Arginine--tRNA|
           ligase) (ArgRS)
          Length = 609

 Score = 29.6 bits (65), Expect = 6.9
 Identities = 15/39 (38%), Positives = 23/39 (58%)
 Frame = +2

Query: 200 SVESSELSGRSDIGVSIDEGFDDWQEFAEGGNQGILPNV 316
           ++E   +SGR  I VS D+  D+ Q+ A    QGI P++
Sbjct: 396 TLEGQTISGRKGIAVSADDAMDEAQKRALSVLQGINPDL 434

>TTC14_HUMAN (Q96N46) Tetratricopeptide repeat protein 14 (TPR repeat protein|
           14)
          Length = 770

 Score = 29.6 bits (65), Expect = 6.9
 Identities = 19/46 (41%), Positives = 27/46 (58%), Gaps = 3/46 (6%)
 Frame = +2

Query: 347 DSSQIKGMD--PLSVRSMESPNNVSGDSDDWQDFAQS-SAQGDSAK 475
           + +QIK  D  PLS  S+E P++  G S+D +DF  S   Q  S+K
Sbjct: 567 EKTQIKEKDRCPLSSSSLEIPDDFGGRSEDPRDFYNSYKTQAGSSK 612

>GR1_ARATH (Q9ZRT1) Protein gamma response 1 (Protein gamma response I)|
          Length = 589

 Score = 29.6 bits (65), Expect = 6.9
 Identities = 10/18 (55%), Positives = 14/18 (77%)
 Frame = +1

Query: 268 LARICRRWKSGHTTKCRR 321
           L+R C++WKS HT  C+R
Sbjct: 325 LSRTCKKWKSQHTFLCKR 342

>TUBE_DROME (P22812) Protein Tube|
          Length = 462

 Score = 29.6 bits (65), Expect = 6.9
 Identities = 28/109 (25%), Positives = 44/109 (40%), Gaps = 5/109 (4%)
 Frame = +2

Query: 119 PAIAET-NVRIGAGNSVAEFTGSSLDKNSVESSELSGRSDIGVSIDEGFDDWQEFAEGGN 295
           PA A T      + N++   +  ++ K S E+     RS    S+ +  DD  +  E G 
Sbjct: 341 PAKASTATTSTASSNNLPMISALNISKGSRETLRPESRSSSS-SLSKDDDDDNDGEEDGE 399

Query: 296 Q----GILPNVGEHTEMPSESDSSQIKGMDPLSVRSMESPNNVSGDSDD 430
           +      LPN+    +  S +DSS           S E  N+ S  S+D
Sbjct: 400 EEYPDAFLPNLSNSEQQSSNNDSSLTTVTGTSGDNSFELTNDSSSTSND 448

>MEIS1_XENLA (P79937) Homeobox protein Meis1 (XMeis1)|
          Length = 390

 Score = 29.6 bits (65), Expect = 6.9
 Identities = 20/56 (35%), Positives = 27/56 (48%)
 Frame = +2

Query: 263 DDWQEFAEGGNQGILPNVGEHTEMPSESDSSQIKGMDPLSVRSMESPNNVSGDSDD 430
           DD      GG  G  P+ G HT    ++ S Q  G+D     S+ SP+  +GD DD
Sbjct: 218 DDAASIRSGGTPG--PSSGGHTSHSGDNSSEQGDGLD----NSIASPS--TGDDDD 265

>MCP_BPF41 (P26596) Major capsid protein (MCP)|
          Length = 301

 Score = 29.6 bits (65), Expect = 6.9
 Identities = 16/52 (30%), Positives = 28/52 (53%), Gaps = 4/52 (7%)
 Frame = +2

Query: 275 EFAEGGNQGILPNVGEHTEMPSESDSSQIKGMDP----LSVRSMESPNNVSG 418
           EF +G    + PN+    E   ES++  + G+DP    L+V++ ES   ++G
Sbjct: 128 EFVDGYRVVVYPNLTPTAEATKESETDSVDGVDPIQWTLAVQATESDIYLNG 179

>TSP3_BRARE (Q8JHW2) Thrombospondin-3 precursor (Thbs3)|
          Length = 962

 Score = 29.3 bits (64), Expect = 9.0
 Identities = 16/62 (25%), Positives = 27/62 (43%)
 Frame = +2

Query: 284 EGGNQGILPNVGEHTEMPSESDSSQIKGMDPLSVRSMESPNNVSGDSDDWQDFAQSSAQG 463
           +  N GI  +  E  +     D+  I G+ P + R + +PN    DS+   D  ++    
Sbjct: 651 DSDNDGIGDDCDEDDDNDGIPDNHAINGIGPDNCRLISNPNQKDSDSNGVGDVCENDFDN 710

Query: 464 DS 469
           DS
Sbjct: 711 DS 712

>MRAY_PROMM (Q7V3S7) Phospho-N-acetylmuramoyl-pentapeptide-transferase (EC|
           2.7.8.13) (UDP-MurNAc-pentapeptide phosphotransferase)
          Length = 373

 Score = 29.3 bits (64), Expect = 9.0
 Identities = 16/46 (34%), Positives = 23/46 (50%), Gaps = 2/46 (4%)
 Frame = +2

Query: 179 GSSLDKNSVESSELSGRSDIGVS--IDEGFDDWQEFAEGGNQGILP 310
           GS +  N   S +L   S I ++  +  GFDDW+    G N G+ P
Sbjct: 108 GSFVSVNGESSEQLLALSWITLAYMLIGGFDDWRSLTRGTNTGLTP 153

>MEIS1_MOUSE (Q60954) Homeobox protein Meis1 (Myeloid ecotropic viral|
           integration site 1)
          Length = 390

 Score = 29.3 bits (64), Expect = 9.0
 Identities = 20/56 (35%), Positives = 27/56 (48%)
 Frame = +2

Query: 263 DDWQEFAEGGNQGILPNVGEHTEMPSESDSSQIKGMDPLSVRSMESPNNVSGDSDD 430
           DD      GG  G  P+ G HT    ++ S Q  G+D     S+ SP+  +GD DD
Sbjct: 218 DDTASTRSGGTPG--PSSGGHTSHSGDNSSEQGDGLD----NSVASPS--TGDDDD 265

>MEIS1_HUMAN (O00470) Homeobox protein Meis1|
          Length = 390

 Score = 29.3 bits (64), Expect = 9.0
 Identities = 20/56 (35%), Positives = 27/56 (48%)
 Frame = +2

Query: 263 DDWQEFAEGGNQGILPNVGEHTEMPSESDSSQIKGMDPLSVRSMESPNNVSGDSDD 430
           DD      GG  G  P+ G HT    ++ S Q  G+D     S+ SP+  +GD DD
Sbjct: 218 DDTASTRSGGTPG--PSSGGHTSHSGDNSSEQGDGLD----NSVASPS--TGDDDD 265

>DSPP_RAT (Q62598) Dentin sialophosphoprotein precursor [Contains: Dentin|
           phosphoprotein (Dentin phosphophoryn) (DPP); Dentin
           sialoprotein (DSP)]
          Length = 687

 Score = 29.3 bits (64), Expect = 9.0
 Identities = 27/103 (26%), Positives = 44/103 (42%)
 Frame = +2

Query: 167 AEFTGSSLDKNSVESSELSGRSDIGVSIDEGFDDWQEFAEGGNQGILPNVGEHTEMPSES 346
           ++ + SS   +S +SS+ S  SD   S D         +   + G   +        S+S
Sbjct: 559 SDSSDSSETSDSSDSSDTSDSSDSSDSSDSSNSSDTSDSSDSSDGDSSDGDSSDSDSSDS 618

Query: 347 DSSQIKGMDPLSVRSMESPNNVSGDSDDWQDFAQSSAQGDSAK 475
           DSS     D  S  S +S ++ S DSD     + S +  D++K
Sbjct: 619 DSSNSSDSD--SSDSSDSSSSDSSDSDSDSKDSTSDSSDDNSK 659

>YOPN_YERPS (Q663K1) Outer membrane protein yopN (Yop4b) (LcrE)|
          Length = 292

 Score = 29.3 bits (64), Expect = 9.0
 Identities = 19/71 (26%), Positives = 33/71 (46%)
 Frame = +2

Query: 98  LFIQKAVPAIAETNVRIGAGNSVAEFTGSSLDKNSVESSELSGRSDIGVSIDEGFDDWQE 277
           LF+QKA+ A  ++           + +GS  +K  +  ++L    + G   D+    WQ 
Sbjct: 232 LFLQKALSADLQS-----------QQSGSGREKLGIVINDLQKLKEFGSVSDQVKGFWQF 280

Query: 278 FAEGGNQGILP 310
           F+EG   G+ P
Sbjct: 281 FSEGKTNGVRP 291

>FLIDL_VIBPA (Q03475) Lateral flagellar hook-associated protein 2 (HAP2)|
           (Filament CAP protein) (Flagellar cap protein)
          Length = 445

 Score = 29.3 bits (64), Expect = 9.0
 Identities = 22/73 (30%), Positives = 38/73 (52%), Gaps = 6/73 (8%)
 Frame = +2

Query: 200 SVESSELSGRSDIGVSIDEGFDD------WQEFAEGGNQGILPNVGEHTEMPSESDSSQI 361
           +V  ++ SG + IG+ I  G DD        +F +  N  ++  + EHT++ SE     +
Sbjct: 248 TVTKAQTSGETAIGLGI--GADDEATKEQLNKFVDAYNT-LISTIDEHTQIGSEDKKRGV 304

Query: 362 KGMDPLSVRSMES 400
              DP ++RS+ES
Sbjct: 305 LASDP-TMRSIES 316


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.318    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 80,919,427
Number of Sequences: 219361
Number of extensions: 1625944
Number of successful extensions: 5684
Number of sequences better than 10.0: 25
Number of HSP's better than 10.0 without gapping: 5181
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 5445
length of database: 80,573,946
effective HSP length: 107
effective length of database: 57,102,319
effective search space used: 5196311029
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)