>ref|XM_482680.1| Oryza sativa (japonica cultivar-group),  mRNA
          Length = 3033

 Score = 58.0 bits (29), Expect = 3e-05
 Identities = 53/61 (86%)
 Strand = Plus / Plus

                                                                        
Query: 216  aattgtctggaaggagtgacattggagtcagtattgatgaaggttttgatgactggcaag 275
            ||||| ||| |||| |||| | ||||||| |||| ||||||| |||||||||||||||||
Sbjct: 1028 aattgcctgcaaggggtgatactggagtcggtatagatgaagcttttgatgactggcaag 1087

             
Query: 276  a 276
            |
Sbjct: 1088 a 1088



 Score = 42.1 bits (21), Expect = 2.1
 Identities = 36/41 (87%)
 Strand = Plus / Plus

                                                     
Query: 551  gaacattctttagaagctcatgctgttgatttatggcctgt 591
            ||||||| || ||||||| || ||||||| |||||||||||
Sbjct: 1366 gaacatttttcagaagctaattctgttgagttatggcctgt 1406

>dbj|AP008214.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 8, complete
                sequence
          Length = 28434780

 Score = 58.0 bits (29), Expect = 3e-05
 Identities = 53/61 (86%)
 Strand = Plus / Minus

                                                                            
Query: 216      aattgtctggaaggagtgacattggagtcagtattgatgaaggttttgatgactggcaag 275
                ||||| ||| |||| |||| | ||||||| |||| ||||||| |||||||||||||||||
Sbjct: 21846768 aattgcctgcaaggggtgatactggagtcggtatagatgaagcttttgatgactggcaag 21846709

                 
Query: 276      a 276
                |
Sbjct: 21846708 a 21846708



 Score = 42.1 bits (21), Expect = 2.1
 Identities = 36/41 (87%)
 Strand = Plus / Minus

                                                         
Query: 551      gaacattctttagaagctcatgctgttgatttatggcctgt 591
                ||||||| || ||||||| || ||||||| |||||||||||
Sbjct: 21846430 gaacatttttcagaagctaattctgttgagttatggcctgt 21846390

>dbj|AP004665.4| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 8, PAC
              clone:P0429B05
          Length = 155024

 Score = 58.0 bits (29), Expect = 3e-05
 Identities = 53/61 (86%)
 Strand = Plus / Minus

                                                                          
Query: 216    aattgtctggaaggagtgacattggagtcagtattgatgaaggttttgatgactggcaag 275
              ||||| ||| |||| |||| | ||||||| |||| ||||||| |||||||||||||||||
Sbjct: 126351 aattgcctgcaaggggtgatactggagtcggtatagatgaagcttttgatgactggcaag 126292

               
Query: 276    a 276
              |
Sbjct: 126291 a 126291



 Score = 42.1 bits (21), Expect = 2.1
 Identities = 36/41 (87%)
 Strand = Plus / Minus

                                                       
Query: 551    gaacattctttagaagctcatgctgttgatttatggcctgt 591
              ||||||| || ||||||| || ||||||| |||||||||||
Sbjct: 126013 gaacatttttcagaagctaattctgttgagttatggcctgt 125973

>dbj|AP004558.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 8, PAC
             clone:P0409A07
          Length = 146663

 Score = 58.0 bits (29), Expect = 3e-05
 Identities = 53/61 (86%)
 Strand = Plus / Minus

                                                                         
Query: 216   aattgtctggaaggagtgacattggagtcagtattgatgaaggttttgatgactggcaag 275
             ||||| ||| |||| |||| | ||||||| |||| ||||||| |||||||||||||||||
Sbjct: 47437 aattgcctgcaaggggtgatactggagtcggtatagatgaagcttttgatgactggcaag 47378

              
Query: 276   a 276
             |
Sbjct: 47377 a 47377



 Score = 42.1 bits (21), Expect = 2.1
 Identities = 36/41 (87%)
 Strand = Plus / Minus

                                                      
Query: 551   gaacattctttagaagctcatgctgttgatttatggcctgt 591
             ||||||| || ||||||| || ||||||| |||||||||||
Sbjct: 47099 gaacatttttcagaagctaattctgttgagttatggcctgt 47059

>gb|AC012558.9| Homo sapiens chromosome 10 clone RP11-174J11, complete sequence
          Length = 179391

 Score = 46.1 bits (23), Expect = 0.13
 Identities = 23/23 (100%)
 Strand = Plus / Plus

                                    
Query: 414   caggtgattctgatgattggcaa 436
             |||||||||||||||||||||||
Sbjct: 59590 caggtgattctgatgattggcaa 59612

>gb|AC157547.5| Mus musculus chromosome 8, clone RP24-229E19, complete sequence
          Length = 162954

 Score = 42.1 bits (21), Expect = 2.1
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                   
Query: 263    gatgactggcaagaatttgca 283
              |||||||||||||||||||||
Sbjct: 111660 gatgactggcaagaatttgca 111680

>gb|AC161281.2| Pan troglodytes BAC clone CH251-392N12 from chromosome 7, complete
             sequence
          Length = 159549

 Score = 42.1 bits (21), Expect = 2.1
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                  
Query: 410   gtttcaggtgattctgatgat 430
             |||||||||||||||||||||
Sbjct: 72661 gtttcaggtgattctgatgat 72681

>emb|CR376739.10| Zebrafish DNA sequence from clone CH211-44M2 in linkage group 24,
              complete sequence
          Length = 163471

 Score = 42.1 bits (21), Expect = 2.1
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                   
Query: 299    ggcatactaccaaatgtcgga 319
              |||||||||||||||||||||
Sbjct: 137179 ggcatactaccaaatgtcgga 137199

>gb|AC112680.12| Mus musculus chromosome 9, clone RP23-203D1, complete sequence
          Length = 226883

 Score = 42.1 bits (21), Expect = 2.1
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                   
Query: 349    ctcctcacaaataaaaggaat 369
              |||||||||||||||||||||
Sbjct: 166025 ctcctcacaaataaaaggaat 166045

>gb|AC162361.7| Mus musculus chromosome 7, clone RP23-177P20, complete sequence
          Length = 230870

 Score = 42.1 bits (21), Expect = 2.1
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                  
Query: 539   tccatttctctagaacattct 559
             |||||||||||||||||||||
Sbjct: 65512 tccatttctctagaacattct 65492

>emb|CR385074.10| Zebrafish DNA sequence from clone CH211-258K6 in linkage group 23,
             complete sequence
          Length = 163114

 Score = 42.1 bits (21), Expect = 2.1
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                  
Query: 337   ttcagagagcgactcctcaca 357
             |||||||||||||||||||||
Sbjct: 53463 ttcagagagcgactcctcaca 53483

>gb|AC101658.8| Mus musculus chromosome 7, clone RP23-470G18, complete sequence
          Length = 185449

 Score = 42.1 bits (21), Expect = 2.1
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                   
Query: 539    tccatttctctagaacattct 559
              |||||||||||||||||||||
Sbjct: 167987 tccatttctctagaacattct 167967

>dbj|AK116658.1| Ciona intestinalis cDNA, clone:ciad061d23, full insert sequence
          Length = 1907

 Score = 42.1 bits (21), Expect = 2.1
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                 
Query: 89   gtagacaaccttttcattcaa 109
            |||||||||||||||||||||
Sbjct: 1169 gtagacaaccttttcattcaa 1189

>dbj|AK114986.1| Ciona intestinalis cDNA, clone:cieg025i20, full insert sequence
          Length = 2320

 Score = 42.1 bits (21), Expect = 2.1
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                 
Query: 89   gtagacaaccttttcattcaa 109
            |||||||||||||||||||||
Sbjct: 1181 gtagacaaccttttcattcaa 1161

>gb|AY365117.2| Mycobacterium vanbaalenii strain PYR-1 phenanthree degradation pathway
             gene cluster, complete sequence
          Length = 37237

 Score = 40.1 bits (20), Expect = 8.1
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 452   tctgctcaaggagattcagc 471
             ||||||||||||||||||||
Sbjct: 25973 tctgctcaaggagattcagc 25992

>gb|AY692913.1| Saccharomyces cerevisiae clone FLH113341.01X YLR246W gene, complete
           cds
          Length = 1080

 Score = 40.1 bits (20), Expect = 8.1
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 489 catcgtgtggtcaaggagga 508
           ||||||||||||||||||||
Sbjct: 898 catcgtgtggtcaaggagga 917

>gb|AF546904.1| Mycobacterium sp. S65 pyrene degradation gene cluster, partial
            sequence
          Length = 5607

 Score = 40.1 bits (20), Expect = 8.1
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 452  tctgctcaaggagattcagc 471
            ||||||||||||||||||||
Sbjct: 3116 tctgctcaaggagattcagc 3135

>gb|AC112260.6| Mus musculus BAC clone RP23-185L5 from chromosome 18, complete sequence
          Length = 216325

 Score = 40.1 bits (20), Expect = 8.1
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 208   gagcagtgaattgtctggaa 227
             ||||||||||||||||||||
Sbjct: 86763 gagcagtgaattgtctggaa 86782

>gb|AC159466.3| Mus musculus 10 BAC RP23-388A21 (Roswell Park Cancer Institute (C57BL/6J
              Female) Mouse BAC Library) complete sequence
          Length = 190140

 Score = 40.1 bits (20), Expect = 8.1
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 323    catacagagatgccttcaga 342
              ||||||||||||||||||||
Sbjct: 118843 catacagagatgccttcaga 118824

>emb|AL590785.7| Human DNA sequence from clone RP11-321C1 on chromosome 6, complete
              sequence
          Length = 188159

 Score = 40.1 bits (20), Expect = 8.1
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 267    actggcaagaatttgcagaa 286
              ||||||||||||||||||||
Sbjct: 109509 actggcaagaatttgcagaa 109490

>emb|AL354699.11| Human DNA sequence from clone RP11-349E20 on chromosome 1, complete
             sequence
          Length = 81483

 Score = 40.1 bits (20), Expect = 8.1
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 542   atttctctagaacattcttt 561
             ||||||||||||||||||||
Sbjct: 50794 atttctctagaacattcttt 50775

>emb|BX890572.9| Zebrafish DNA sequence from clone CH211-234F20 in linkage group 4
           Contains the gene for a novel protein containing two
           notch (DSL) domains and an EF hand domain, the gene for
           a novel protein similar to vertebrate myosin binding
           protein H (MYBPH), the gene for a novel protein sinilar
           to human and mouse CWF19-like 1, cell cycle control (S.
           pombe) (CWF19L1), the gene for a novel protein
           (zgc:55718), the gene for a novel protein containing
           Kelch motifs and a BTB/POZ domain, the sycp3 gene for
           synaptonemal complex protein 3, a novel gene and a CpG
           island, complete sequence
          Length = 166208

 Score = 40.1 bits (20), Expect = 8.1
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 61  ttcagaagatttagcttcag 80
           ||||||||||||||||||||
Sbjct: 253 ttcagaagatttagcttcag 234

>emb|AL669814.16| Mouse DNA sequence from clone RP23-431J18 on chromosome 11 Contains the
             5' end of the Ranbp17 gene for RAN binding protein 17, the
             Gabrp gene for gamma-aminobutyric acid (GABA-A) receptor,
             pi, the 3' end of the Kcnip1 gene for Kv
             channel-interacting protein 1 and a CpG island, complete
             sequence
          Length = 198320

 Score = 40.1 bits (20), Expect = 8.1
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 250   tgatgaaggttttgatgact 269
             ||||||||||||||||||||
Sbjct: 89236 tgatgaaggttttgatgact 89255

>gb|AC021621.9| Homo sapiens chromosome 8, clone RP11-356M23, complete sequence
          Length = 186114

 Score = 40.1 bits (20), Expect = 8.1
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 529  tgcagaaacatccatttctc 548
            ||||||||||||||||||||
Sbjct: 7109 tgcagaaacatccatttctc 7128

>gb|AC108162.4| Homo sapiens BAC clone RP11-686G17 from 4, complete sequence
          Length = 185624

 Score = 40.1 bits (20), Expect = 8.1
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 547    tctagaacattctttagaag 566
              ||||||||||||||||||||
Sbjct: 113682 tctagaacattctttagaag 113663

>gb|AC012410.10| Homo sapiens chromosome 8, clone RP11-354A3, complete sequence
          Length = 220715

 Score = 40.1 bits (20), Expect = 8.1
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 529  tgcagaaacatccatttctc 548
            ||||||||||||||||||||
Sbjct: 6038 tgcagaaacatccatttctc 6019

>gb|AC013646.6|AC013646 Homo sapiens chromosome , clone RP11-17M8, complete sequence
          Length = 32415

 Score = 40.1 bits (20), Expect = 8.1
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 529   tgcagaaacatccatttctc 548
             ||||||||||||||||||||
Sbjct: 26819 tgcagaaacatccatttctc 26838

>gb|AC156276.6| Mus musculus 10 BAC RP24-323L12 (Roswell Park Cancer Institute (C57BL/6J
              Male) Mouse BAC Library) complete sequence
          Length = 199119

 Score = 40.1 bits (20), Expect = 8.1
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 323    catacagagatgccttcaga 342
              ||||||||||||||||||||
Sbjct: 163471 catacagagatgccttcaga 163490

>gb|AC162806.4| Mus musculus BAC clone RP23-95E13 from chromosome 9, complete sequence
          Length = 165949

 Score = 40.1 bits (20), Expect = 8.1
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 420   attctgatgattggcaagat 439
             ||||||||||||||||||||
Sbjct: 80335 attctgatgattggcaagat 80316

>emb|BX901933.15| Zebrafish DNA sequence from clone DKEY-114H6 in linkage group 22,
             complete sequence
          Length = 42656

 Score = 40.1 bits (20), Expect = 8.1
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 351   cctcacaaataaaaggaatg 370
             ||||||||||||||||||||
Sbjct: 22967 cctcacaaataaaaggaatg 22948

>emb|BX901929.9| Zebrafish DNA sequence from clone DKEY-11K24 in linkage group 4,
            complete sequence
          Length = 70937

 Score = 40.1 bits (20), Expect = 8.1
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 61   ttcagaagatttagcttcag 80
            ||||||||||||||||||||
Sbjct: 1748 ttcagaagatttagcttcag 1767

>gb|AC148983.2| Mus musculus BAC clone RP23-189G7 from 18, complete sequence
          Length = 212564

 Score = 40.1 bits (20), Expect = 8.1
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 208   gagcagtgaattgtctggaa 227
             ||||||||||||||||||||
Sbjct: 71616 gagcagtgaattgtctggaa 71597

>gb|U20865.1|YSCL9672 Saccharomyces cerevisiae chromosome XII cosmid 9672
          Length = 40455

 Score = 40.1 bits (20), Expect = 8.1
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 489   catcgtgtggtcaaggagga 508
             ||||||||||||||||||||
Sbjct: 10717 catcgtgtggtcaaggagga 10736

>gb|CP000103.1| Nitrosospira multiformis ATCC 25196, complete genome
          Length = 3184243

 Score = 40.1 bits (20), Expect = 8.1
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                   
Query: 239     ggagtcagtattgatgaagg 258
               ||||||||||||||||||||
Sbjct: 2611840 ggagtcagtattgatgaagg 2611821


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 5,481,093
Number of Sequences: 3902068
Number of extensions: 5481093
Number of successful extensions: 105750
Number of sequences better than 10.0: 34
Number of HSP's better than 10.0 without gapping: 34
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 105612
Number of HSP's gapped (non-prelim): 138
length of query: 597
length of database: 17,233,045,268
effective HSP length: 23
effective length of query: 574
effective length of database: 17,143,297,704
effective search space: 9840252882096
effective search space used: 9840252882096
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)