ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日：2016年5月1日

Clone Information

BLAST Search Result

Clone Name bags8j07
Clone Library Name barley_pub
No. Definition Score
(bits)		 E
Value
1dbj|AP008218.1| Oryza sativa (japonica cultivar-group) genomic D... 46 0.10
2dbj|AP008214.1| Oryza sativa (japonica cultivar-group) genomic D... 46 0.10
3dbj|AP005819.2| Oryza sativa (japonica cultivar-group) genomic D... 46 0.10
4gb|DP000011.1| Oryza sativa (japonica cultivar-group) chromosome... 46 0.10
5emb|AL844876.4|CNS08CAZ Oryza sativa chromosome 12, . BAC OSJNBa... 46 0.10
6emb|AL713938.2|CNS07YPK Oryza sativa chromosome 12, . BAC OJ1372... 46 0.10
7gb|AC129217.3| Mus musculus BAC clone RP24-458M20 from chromosom... 42 1.6
8gb|AC073153.16| Mus musculus Strain C57BL6/J chromosome 19 BAC, ... 42 1.6
9gb|AC011373.4| Homo sapiens chromosome 5 clone CTB-108O6, comple... 42 1.6
10ref|XM_515073.1| PREDICTED: Pan troglodytes similar to HSPC242 (... 40 6.4
11gb|AC159404.1| Trypanosoma brucei chromosome 8 clone RPCI93-10K1... 40 6.4
12gb|AC148611.1| Oryza sativa (japonica cultivar-group) chromosome... 40 6.4
13gb|CP000071.1| Trypanosoma brucei chromosome 8, complete sequence 40 6.4
14gb|AC148966.2| X. tropicalis BAC clone ISB1-137N19 containing ge... 40 6.4
15gb|DP000009.1| Oryza sativa (japonica cultivar-group) chromosome 3 40 6.4
16gb|AC135907.1| Genomic sequence for Oryza sativa, Nipponbare str... 40 6.4
17gb|AC117217.2| Mus musculus BAC clone RP23-318C3 from 17, comple... 40 6.4
18gb|AC145817.1| Pan troglodytes BAC clone RP43-6C4 from 7, comple... 40 6.4
19gb|AC137597.2| Genomic sequence for Oryza sativa, Nipponbare str... 40 6.4
20gb|AC093489.2| Oryza sativa (japonica cultivar-group) chromosome... 40 6.4
21gb|AC069158.6| Genomic Sequence for Oryza sativa, Nipponbare str... 40 6.4
22dbj|AP008215.1| Oryza sativa (japonica cultivar-group) genomic D... 40 6.4
23dbj|AP008213.1| Oryza sativa (japonica cultivar-group) genomic D... 40 6.4
24dbj|AP008212.1| Oryza sativa (japonica cultivar-group) genomic D... 40 6.4
25dbj|AP008211.1| Oryza sativa (japonica cultivar-group) genomic D... 40 6.4
26dbj|AP008209.1| Oryza sativa (japonica cultivar-group) genomic D... 40 6.4
27dbj|AP008208.1| Oryza sativa (japonica cultivar-group) genomic D... 40 6.4
28dbj|AP008207.1| Oryza sativa (japonica cultivar-group) genomic D... 40 6.4
29gb|AC083869.2|AC083869 Homo sapiens chromosome 7 clone RP11-733N... 40 6.4
30dbj|AP003196.3| Oryza sativa (japonica cultivar-group) genomic D... 40 6.4
31dbj|AP003562.3| Oryza sativa (japonica cultivar-group) genomic D... 40 6.4
32dbj|AP004153.3| Oryza sativa (japonica cultivar-group) genomic D... 40 6.4
33dbj|AP005424.3| Oryza sativa (japonica cultivar-group) genomic D... 40 6.4
34dbj|AP005833.2| Oryza sativa (japonica cultivar-group) genomic D... 40 6.4
35dbj|AP004811.2| Oryza sativa (japonica cultivar-group) genomic D... 40 6.4
36dbj|AP005462.5| Oryza sativa (japonica cultivar-group) genomic D... 40 6.4
37dbj|AP004300.3| Oryza sativa (japonica cultivar-group) genomic D... 40 6.4
38gb|AC004832.3|AC004832 Homo sapiens PAC clone RP4-539M6 from 22,... 40 6.4
39emb|AL117265.3| Oryza sativa genomic DNA, chromosome 4, BAC clon... 40 6.4
40emb|AJ535214.1|OSA535214 Oryza sativa (japonica cultivar-group) ... 40 6.4
41gb|AC005585.1|AC005585 Homo sapiens chromosome 22, clone hRPC.13... 40 6.4
42emb|AL772423.4|CNS08CA1 Oryza sativa chromosome 12, . BAC OJ1058... 40 6.4 
>dbj|AP008218.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 12, complete
                sequence
          Length = 27566993

 Score = 46.1 bits (23), Expect = 0.10
 Identities = 26/27 (96%)
 Strand = Plus / Minus

                                           
Query: 272      tcaagtggatgtgaaaggaactggagc 298
                ||||||||||||||| |||||||||||
Sbjct: 15159935 tcaagtggatgtgaacggaactggagc 15159909



 Score = 40.1 bits (20), Expect = 6.4
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                        
Query: 275      agtggatgtgaaaggaactggagc 298
                ||||||||||||||||| ||||||
Sbjct: 24400453 agtggatgtgaaaggaattggagc 24400430
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>dbj|AP008214.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 8, complete
                sequence
          Length = 28434780

 Score = 46.1 bits (23), Expect = 0.10
 Identities = 26/27 (96%)
 Strand = Plus / Minus

                                           
Query: 272      tcaagtggatgtgaaaggaactggagc 298
                ||||||||||||||| |||||||||||
Sbjct: 12180852 tcaagtggatgtgaacggaactggagc 12180826
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>dbj|AP005819.2| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 8, BAC
             clone:OSJNBa0063H21
          Length = 188058

 Score = 46.1 bits (23), Expect = 0.10
 Identities = 26/27 (96%)
 Strand = Plus / Minus

                                        
Query: 272   tcaagtggatgtgaaaggaactggagc 298
             ||||||||||||||| |||||||||||
Sbjct: 54344 tcaagtggatgtgaacggaactggagc 54318
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>gb|DP000011.1| Oryza sativa (japonica cultivar-group) chromosome 12, complete sequence
          Length = 27492551

 Score = 46.1 bits (23), Expect = 0.10
 Identities = 26/27 (96%)
 Strand = Plus / Minus

                                           
Query: 272      tcaagtggatgtgaaaggaactggagc 298
                ||||||||||||||| |||||||||||
Sbjct: 15114220 tcaagtggatgtgaacggaactggagc 15114194



 Score = 40.1 bits (20), Expect = 6.4
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                        
Query: 275      agtggatgtgaaaggaactggagc 298
                ||||||||||||||||| ||||||
Sbjct: 24328659 agtggatgtgaaaggaattggagc 24328636
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>emb|AL844876.4|CNS08CAZ Oryza sativa chromosome 12, . BAC OSJNBa0063F10 of library OSJNBa from
             chromosome 12 of cultivar Nipponbare of ssp. japonica of
             Oryza sativa (rice), complete sequence
          Length = 153687

 Score = 46.1 bits (23), Expect = 0.10
 Identities = 26/27 (96%)
 Strand = Plus / Plus

                                        
Query: 272   tcaagtggatgtgaaaggaactggagc 298
             ||||||||||||||| |||||||||||
Sbjct: 95981 tcaagtggatgtgaacggaactggagc 96007
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>emb|AL713938.2|CNS07YPK Oryza sativa chromosome 12, . BAC OJ1372_C12 of library Monsanto from
             chromosome 12 of cultivar Nipponbare of ssp. japonica of
             Oryza sativa (rice), complete sequence
          Length = 113071

 Score = 46.1 bits (23), Expect = 0.10
 Identities = 26/27 (96%)
 Strand = Plus / Minus

                                        
Query: 272   tcaagtggatgtgaaaggaactggagc 298
             ||||||||||||||| |||||||||||
Sbjct: 99352 tcaagtggatgtgaacggaactggagc 99326
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>gb|AC129217.3| Mus musculus BAC clone RP24-458M20 from chromosome 19, complete
             sequence
          Length = 175796

 Score = 42.1 bits (21), Expect = 1.6
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                  
Query: 237   agtatgccttgagaattgttt 257
             |||||||||||||||||||||
Sbjct: 15767 agtatgccttgagaattgttt 15747
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>gb|AC073153.16| Mus musculus Strain C57BL6/J chromosome 19 BAC, RP23-49P8 Complete
              Sequence, complete sequence
          Length = 220143

 Score = 42.1 bits (21), Expect = 1.6
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                   
Query: 237    agtatgccttgagaattgttt 257
              |||||||||||||||||||||
Sbjct: 214175 agtatgccttgagaattgttt 214195
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>gb|AC011373.4| Homo sapiens chromosome 5 clone CTB-108O6, complete sequence
          Length = 199316

 Score = 42.1 bits (21), Expect = 1.6
 Identities = 24/25 (96%)
 Strand = Plus / Minus

                                       
Query: 6      cacacattatgtggtcaatctgagc 30
              |||||||||||||| ||||||||||
Sbjct: 108609 cacacattatgtggccaatctgagc 108585
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>ref|XM_515073.1| PREDICTED: Pan troglodytes similar to HSPC242 (LOC458756), mRNA
          Length = 909

 Score = 40.1 bits (20), Expect = 6.4
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                              
Query: 71 gagaagatagctgaccctga 90
          ||||||||||||||||||||
Sbjct: 22 gagaagatagctgaccctga 41
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>gb|AC159404.1| Trypanosoma brucei chromosome 8 clone RPCI93-10K10, complete sequence
          Length = 182660

 Score = 40.1 bits (20), Expect = 6.4
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                     
Query: 412   ggtgagagagaatgataaatataa 435
             ||||||||| ||||||||||||||
Sbjct: 68732 ggtgagagaaaatgataaatataa 68709
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>gb|AC148611.1| Oryza sativa (japonica cultivar-group) chromosome 5 clone B1007D10,
             complete sequence
          Length = 153366

 Score = 40.1 bits (20), Expect = 6.4
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                     
Query: 275   agtggatgtgaaaggaactggagc 298
             ||||||||||||||||| ||||||
Sbjct: 38738 agtggatgtgaaaggaattggagc 38761
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>gb|CP000071.1| Trypanosoma brucei chromosome 8, complete sequence
          Length = 2481190

 Score = 40.1 bits (20), Expect = 6.4
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                       
Query: 412     ggtgagagagaatgataaatataa 435
               ||||||||| ||||||||||||||
Sbjct: 2089453 ggtgagagaaaatgataaatataa 2089476
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>gb|AC148966.2| X. tropicalis BAC clone ISB1-137N19 containing gene for DLL3, complete
             sequence
          Length = 102009

 Score = 40.1 bits (20), Expect = 6.4
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 79    agctgaccctgatagtgctg 98
             ||||||||||||||||||||
Sbjct: 76872 agctgaccctgatagtgctg 76853
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>gb|DP000009.1| Oryza sativa (japonica cultivar-group) chromosome 3
          Length = 36102668

 Score = 40.1 bits (20), Expect = 6.4
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                        
Query: 275      agtggatgtgaaaggaactggagc 298
                ||||||||||||||||| ||||||
Sbjct: 13999031 agtggatgtgaaaggaattggagc 13999008
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>gb|AC135907.1| Genomic sequence for Oryza sativa, Nipponbare strain, clone OJ1057D12,
             from chromosome 3, complete sequence
          Length = 161676

 Score = 40.1 bits (20), Expect = 6.4
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                     
Query: 275   agtggatgtgaaaggaactggagc 298
             ||||||||||||||||| ||||||
Sbjct: 12451 agtggatgtgaaaggaattggagc 12474
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>gb|AC117217.2| Mus musculus BAC clone RP23-318C3 from 17, complete sequence
          Length = 199711

 Score = 40.1 bits (20), Expect = 6.4
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 126    ttagggaacgtcatggaagg 145
              ||||||||||||||||||||
Sbjct: 142573 ttagggaacgtcatggaagg 142554
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>gb|AC145817.1| Pan troglodytes BAC clone RP43-6C4 from 7, complete sequence
          Length = 134049

 Score = 40.1 bits (20), Expect = 6.4
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 414    tgagagagaatgataaatat 433
              ||||||||||||||||||||
Sbjct: 131726 tgagagagaatgataaatat 131745
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>gb|AC137597.2| Genomic sequence for Oryza sativa, Nipponbare strain, clone
            OSJNBa0022F22, from chromosome 3, complete sequence
          Length = 144268

 Score = 40.1 bits (20), Expect = 6.4
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                    
Query: 275  agtggatgtgaaaggaactggagc 298
            ||||||||||||||||| ||||||
Sbjct: 8710 agtggatgtgaaaggaattggagc 8687
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>gb|AC093489.2| Oryza sativa (japonica cultivar-group) chromosome 5 clone OJ1116_A10,
             complete sequence
          Length = 102275

 Score = 40.1 bits (20), Expect = 6.4
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                     
Query: 275   agtggatgtgaaaggaactggagc 298
             ||||||||||||||||| ||||||
Sbjct: 37578 agtggatgtgaaaggaattggagc 37601
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>gb|AC069158.6| Genomic Sequence for Oryza sativa, Nipponbare strain, clone
             OSJNBa0049O12, from chromosome 2, complete sequence
          Length = 155154

 Score = 40.1 bits (20), Expect = 6.4
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                     
Query: 275   agtggatgtgaaaggaactggagc 298
             ||||||||||||||||| ||||||
Sbjct: 30343 agtggatgtgaaaggaattggagc 30320
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>dbj|AP008215.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 9, complete
                sequence
          Length = 22696651

 Score = 40.1 bits (20), Expect = 6.4
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                        
Query: 275      agtggatgtgaaaggaactggagc 298
                ||||||||||||||||| ||||||
Sbjct: 16151798 agtggatgtgaaaggaattggagc 16151821
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>dbj|AP008213.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 7, complete
                sequence
          Length = 29644043

 Score = 40.1 bits (20), Expect = 6.4
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                        
Query: 275      agtggatgtgaaaggaactggagc 298
                ||||||||||||||||| ||||||
Sbjct: 28411292 agtggatgtgaaaggaattggagc 28411269



 Score = 40.1 bits (20), Expect = 6.4
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                        
Query: 275      agtggatgtgaaaggaactggagc 298
                ||||||||||||||||| ||||||
Sbjct: 12430315 agtggatgtgaaaggaattggagc 12430292
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>dbj|AP008212.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 6, complete
                sequence
          Length = 30731886

 Score = 40.1 bits (20), Expect = 6.4
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                        
Query: 275      agtggatgtgaaaggaactggagc 298
                ||||||||||||||||| ||||||
Sbjct: 12790824 agtggatgtgaaaggaattggagc 12790847
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>dbj|AP008211.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 5, complete
               sequence
          Length = 29737217

 Score = 40.1 bits (20), Expect = 6.4
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                       
Query: 275     agtggatgtgaaaggaactggagc 298
               ||||||||||||||||| ||||||
Sbjct: 5352064 agtggatgtgaaaggaattggagc 5352087
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>dbj|AP008209.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 3, complete
                sequence
          Length = 36192742

 Score = 40.1 bits (20), Expect = 6.4
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                        
Query: 275      agtggatgtgaaaggaactggagc 298
                ||||||||||||||||| ||||||
Sbjct: 13994006 agtggatgtgaaaggaattggagc 13993983
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>dbj|AP008208.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, complete
                sequence
          Length = 35954743

 Score = 40.1 bits (20), Expect = 6.4
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                        
Query: 275      agtggatgtgaaaggaactggagc 298
                ||||||||||||||||| ||||||
Sbjct: 34474856 agtggatgtgaaaggaattggagc 34474879
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>dbj|AP008207.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, complete
                sequence
          Length = 43261740

 Score = 40.1 bits (20), Expect = 6.4
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                        
Query: 275      agtggatgtgaaaggaactggagc 298
                ||||||||||||||||| ||||||
Sbjct: 18317047 agtggatgtgaaaggaattggagc 18317024



 Score = 40.1 bits (20), Expect = 6.4
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                       
Query: 275     agtggatgtgaaaggaactggagc 298
               ||||||||||||||||| ||||||
Sbjct: 7995029 agtggatgtgaaaggaattggagc 7995052
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>gb|AC083869.2|AC083869 Homo sapiens chromosome 7 clone RP11-733N14, complete sequence
          Length = 172237

 Score = 40.1 bits (20), Expect = 6.4
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 414    tgagagagaatgataaatat 433
              ||||||||||||||||||||
Sbjct: 158167 tgagagagaatgataaatat 158148
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>dbj|AP003196.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, BAC
              clone:B1008C01
          Length = 144141

 Score = 40.1 bits (20), Expect = 6.4
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                      
Query: 275    agtggatgtgaaaggaactggagc 298
              ||||||||||||||||| ||||||
Sbjct: 101341 agtggatgtgaaaggaattggagc 101364
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>dbj|AP003562.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, BAC
             clone:B1108H10
          Length = 136357

 Score = 40.1 bits (20), Expect = 6.4
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                     
Query: 275   agtggatgtgaaaggaactggagc 298
             ||||||||||||||||| ||||||
Sbjct: 74381 agtggatgtgaaaggaattggagc 74358
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>dbj|AP004153.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, BAC
             clone:OJ1111_C07
          Length = 115190

 Score = 40.1 bits (20), Expect = 6.4
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                     
Query: 275   agtggatgtgaaaggaactggagc 298
             ||||||||||||||||| ||||||
Sbjct: 91098 agtggatgtgaaaggaattggagc 91121
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>dbj|AP005424.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 9, PAC
             clone:P0556H01
          Length = 149800

 Score = 40.1 bits (20), Expect = 6.4
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                     
Query: 275   agtggatgtgaaaggaactggagc 298
             ||||||||||||||||| ||||||
Sbjct: 56399 agtggatgtgaaaggaattggagc 56422
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>dbj|AP005833.2| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 9, BAC
              clone:OJ1328_D07
          Length = 155007

 Score = 40.1 bits (20), Expect = 6.4
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                      
Query: 275    agtggatgtgaaaggaactggagc 298
              ||||||||||||||||| ||||||
Sbjct: 152011 agtggatgtgaaaggaattggagc 152034
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>dbj|AP004811.2| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 6, PAC
             clone:P0019A05
          Length = 144255

 Score = 40.1 bits (20), Expect = 6.4
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                     
Query: 275   agtggatgtgaaaggaactggagc 298
             ||||||||||||||||| ||||||
Sbjct: 91601 agtggatgtgaaaggaattggagc 91624
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>dbj|AP005462.5| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 7, PAC
             clone:P0613B07
          Length = 191756

 Score = 40.1 bits (20), Expect = 6.4
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                     
Query: 275   agtggatgtgaaaggaactggagc 298
             ||||||||||||||||| ||||||
Sbjct: 74597 agtggatgtgaaaggaattggagc 74574
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>dbj|AP004300.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 7, PAC
              clone:P0470D12
          Length = 157248

 Score = 40.1 bits (20), Expect = 6.4
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                      
Query: 275    agtggatgtgaaaggaactggagc 298
              ||||||||||||||||| ||||||
Sbjct: 136855 agtggatgtgaaaggaattggagc 136832
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>gb|AC004832.3|AC004832 Homo sapiens PAC clone RP4-539M6 from 22, complete sequence
          Length = 159593

 Score = 40.1 bits (20), Expect = 6.4
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 71    gagaagatagctgaccctga 90
             ||||||||||||||||||||
Sbjct: 36863 gagaagatagctgaccctga 36882
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>emb|AL117265.3| Oryza sativa genomic DNA, chromosome 4, BAC clone: H0811D08, complete
             sequence
          Length = 123337

 Score = 40.1 bits (20), Expect = 6.4
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                     
Query: 275   agtggatgtgaaaggaactggagc 298
             ||||||||||||||||| ||||||
Sbjct: 74233 agtggatgtgaaaggaattggagc 74256
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>emb|AJ535214.1|OSA535214 Oryza sativa (japonica cultivar-group) pdr14 pseudogene, exons 1-34
          Length = 17647

 Score = 40.1 bits (20), Expect = 6.4
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                     
Query: 275   agtggatgtgaaaggaactggagc 298
             ||||||||||||||||| ||||||
Sbjct: 16665 agtggatgtgaaaggaattggagc 16688
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>gb|AC005585.1|AC005585 Homo sapiens chromosome 22, clone hRPC.130_H_16, complete sequence
          Length = 158257

 Score = 40.1 bits (20), Expect = 6.4
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 71     gagaagatagctgaccctga 90
              ||||||||||||||||||||
Sbjct: 145703 gagaagatagctgaccctga 145722
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>emb|AL772423.4|CNS08CA1 Oryza sativa chromosome 12, . BAC OJ1058_H10 of library Monsanto from
             chromosome 12 of cultivar Nipponbare of ssp. japonica of
             Oryza sativa (rice), complete sequence
          Length = 103803

 Score = 40.1 bits (20), Expect = 6.4
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                     
Query: 275   agtggatgtgaaaggaactggagc 298
             ||||||||||||||||| ||||||
Sbjct: 63985 agtggatgtgaaaggaattggagc 63962


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 4,233,993
Number of Sequences: 3902068
Number of extensions: 4233993
Number of successful extensions: 81658
Number of sequences better than 10.0: 42
Number of HSP's better than 10.0 without gapping: 46
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 81275
Number of HSP's gapped (non-prelim): 383
length of query: 476
length of database: 17,233,045,268
effective HSP length: 22
effective length of query: 454
effective length of database: 17,147,199,772
effective search space: 7784828696488
effective search space used: 7784828696488
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)
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