ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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| Clone Name | bags8j05 |
|---|---|
| Clone Library Name | barley_pub |
>ref|XM_483551.1| Oryza sativa (japonica cultivar-group), mRNA Length = 1691 Score = 208 bits (105), Expect = 1e-50 Identities = 321/393 (81%) Strand = Plus / Plus Query: 163 ccagtacttcgggctcggttccgagactcgccacaccgccacatgggttcctgatcctta 222 |||||||| ||| || ||||| ||||||||||| || ||||||||||| ||||||||||| Sbjct: 429 ccagtactacggccttggttctgagactcgccatactgccacatgggtacctgatcctta 488 Query: 223 tggaattgagaccggcaaccaagagaaggcccctgaaggctatgaggagaaatggttgct 282 || || |||| || || | |||||| |||||||||| |||||||||||||||||| | Sbjct: 489 cggcatagagattggtaatccggagaagccccctgaaggatatgaggagaaatggttgat 548 Query: 283 caatatccatgccatcgacacgaggggcgtggtcgacaagcctagctgcaccgagtgcaa 342 |||| | |||||||| ||||| ||||| | | ||||||||| | ||||| |||||||| Sbjct: 549 caatgtgcatgccattgacacaaggggtgcgatcgacaagctaggatgcactgagtgcaa 608 Query: 343 gtgcgactcttacaacgtcacaatcgatgagtatgggcgcacagtctcgaagaactacac 402 ||| || ||||||| | || ||||| ||||||||||||| | || | ||| |||||| Sbjct: 609 gtgtgatctttacaacatgacgatcgacgagtatgggcgcaaactcccaaaggactacat 668 Query: 403 tggtgggttgctttgctgctatgatcagacccagtgtcagctcaaggaagggttcaatgg 462 |||||| || ||||||||||||| |||| ||||| || | |||||||| ||||| || Sbjct: 669 tggtggtttatattgctgctatgatgagacgcagtgcaaggttaaggaaggtttcaacgg 728 Query: 463 cgaggtgcggacggtgttcttgcagtacaccgtgacttggctcgactggactgacgcggt 522 ||| | |||| | ||||||||| |||||| ||||| ||||| ||||||| ||| ||||| Sbjct: 729 tgagctacggaagctgttcttgcggtacactgtgacgtggcttgactggagtgatgcggt 788 Query: 523 ggtgcctgtcaagatctacatatttgacgttac 555 ||||| |||||||| ||||||||||| ||||| Sbjct: 789 tgtgccagtcaagatttacatatttgatgttac 821 Score = 79.8 bits (40), Expect = 9e-12 Identities = 55/60 (91%) Strand = Plus / Plus Query: 20 gtccctgtcccgctccatgagacttacctgcatcactgggttgcagtaccatactatgct 79 |||||||| ||||||||||| |||||||||||||||||||||| | ||||||||||||| Sbjct: 283 gtccctgttccgctccatgatacttacctgcatcactgggttgtggaaccatactatgct 342
>dbj|AP008214.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 8, complete sequence Length = 28434780 Score = 208 bits (105), Expect = 1e-50 Identities = 321/393 (81%) Strand = Plus / Plus Query: 163 ccagtacttcgggctcggttccgagactcgccacaccgccacatgggttcctgatcctta 222 |||||||| ||| || ||||| ||||||||||| || ||||||||||| ||||||||||| Sbjct: 26912640 ccagtactacggccttggttctgagactcgccatactgccacatgggtacctgatcctta 26912699 Query: 223 tggaattgagaccggcaaccaagagaaggcccctgaaggctatgaggagaaatggttgct 282 || || |||| || || | |||||| |||||||||| |||||||||||||||||| | Sbjct: 26912700 cggcatagagattggtaatccggagaagccccctgaaggatatgaggagaaatggttgat 26912759 Query: 283 caatatccatgccatcgacacgaggggcgtggtcgacaagcctagctgcaccgagtgcaa 342 |||| | |||||||| ||||| ||||| | | ||||||||| | ||||| |||||||| Sbjct: 26912760 caatgtgcatgccattgacacaaggggtgcgatcgacaagctaggatgcactgagtgcaa 26912819 Query: 343 gtgcgactcttacaacgtcacaatcgatgagtatgggcgcacagtctcgaagaactacac 402 ||| || ||||||| | || ||||| ||||||||||||| | || | ||| |||||| Sbjct: 26912820 gtgtgatctttacaacatgacgatcgacgagtatgggcgcaaactcccaaaggactacat 26912879 Query: 403 tggtgggttgctttgctgctatgatcagacccagtgtcagctcaaggaagggttcaatgg 462 |||||| || ||||||||||||| |||| ||||| || | |||||||| ||||| || Sbjct: 26912880 tggtggtttatattgctgctatgatgagacgcagtgcaaggttaaggaaggtttcaacgg 26912939 Query: 463 cgaggtgcggacggtgttcttgcagtacaccgtgacttggctcgactggactgacgcggt 522 ||| | |||| | ||||||||| |||||| ||||| ||||| ||||||| ||| ||||| Sbjct: 26912940 tgagctacggaagctgttcttgcggtacactgtgacgtggcttgactggagtgatgcggt 26912999 Query: 523 ggtgcctgtcaagatctacatatttgacgttac 555 ||||| |||||||| ||||||||||| ||||| Sbjct: 26913000 tgtgccagtcaagatttacatatttgatgttac 26913032 Score = 79.8 bits (40), Expect = 9e-12 Identities = 55/60 (91%) Strand = Plus / Plus Query: 20 gtccctgtcccgctccatgagacttacctgcatcactgggttgcagtaccatactatgct 79 |||||||| ||||||||||| |||||||||||||||||||||| | ||||||||||||| Sbjct: 26912494 gtccctgttccgctccatgatacttacctgcatcactgggttgtggaaccatactatgct 26912553
>dbj|AP004592.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 8, PAC clone:P0666G10 Length = 150761 Score = 208 bits (105), Expect = 1e-50 Identities = 321/393 (81%) Strand = Plus / Plus Query: 163 ccagtacttcgggctcggttccgagactcgccacaccgccacatgggttcctgatcctta 222 |||||||| ||| || ||||| ||||||||||| || ||||||||||| ||||||||||| Sbjct: 14040 ccagtactacggccttggttctgagactcgccatactgccacatgggtacctgatcctta 14099 Query: 223 tggaattgagaccggcaaccaagagaaggcccctgaaggctatgaggagaaatggttgct 282 || || |||| || || | |||||| |||||||||| |||||||||||||||||| | Sbjct: 14100 cggcatagagattggtaatccggagaagccccctgaaggatatgaggagaaatggttgat 14159 Query: 283 caatatccatgccatcgacacgaggggcgtggtcgacaagcctagctgcaccgagtgcaa 342 |||| | |||||||| ||||| ||||| | | ||||||||| | ||||| |||||||| Sbjct: 14160 caatgtgcatgccattgacacaaggggtgcgatcgacaagctaggatgcactgagtgcaa 14219 Query: 343 gtgcgactcttacaacgtcacaatcgatgagtatgggcgcacagtctcgaagaactacac 402 ||| || ||||||| | || ||||| ||||||||||||| | || | ||| |||||| Sbjct: 14220 gtgtgatctttacaacatgacgatcgacgagtatgggcgcaaactcccaaaggactacat 14279 Query: 403 tggtgggttgctttgctgctatgatcagacccagtgtcagctcaaggaagggttcaatgg 462 |||||| || ||||||||||||| |||| ||||| || | |||||||| ||||| || Sbjct: 14280 tggtggtttatattgctgctatgatgagacgcagtgcaaggttaaggaaggtttcaacgg 14339 Query: 463 cgaggtgcggacggtgttcttgcagtacaccgtgacttggctcgactggactgacgcggt 522 ||| | |||| | ||||||||| |||||| ||||| ||||| ||||||| ||| ||||| Sbjct: 14340 tgagctacggaagctgttcttgcggtacactgtgacgtggcttgactggagtgatgcggt 14399 Query: 523 ggtgcctgtcaagatctacatatttgacgttac 555 ||||| |||||||| ||||||||||| ||||| Sbjct: 14400 tgtgccagtcaagatttacatatttgatgttac 14432 Score = 79.8 bits (40), Expect = 9e-12 Identities = 55/60 (91%) Strand = Plus / Plus Query: 20 gtccctgtcccgctccatgagacttacctgcatcactgggttgcagtaccatactatgct 79 |||||||| ||||||||||| |||||||||||||||||||||| | ||||||||||||| Sbjct: 13894 gtccctgttccgctccatgatacttacctgcatcactgggttgtggaaccatactatgct 13953
>dbj|AP004464.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 8, PAC clone:P0665C04 Length = 177054 Score = 208 bits (105), Expect = 1e-50 Identities = 321/393 (81%) Strand = Plus / Plus Query: 163 ccagtacttcgggctcggttccgagactcgccacaccgccacatgggttcctgatcctta 222 |||||||| ||| || ||||| ||||||||||| || ||||||||||| ||||||||||| Sbjct: 175430 ccagtactacggccttggttctgagactcgccatactgccacatgggtacctgatcctta 175489 Query: 223 tggaattgagaccggcaaccaagagaaggcccctgaaggctatgaggagaaatggttgct 282 || || |||| || || | |||||| |||||||||| |||||||||||||||||| | Sbjct: 175490 cggcatagagattggtaatccggagaagccccctgaaggatatgaggagaaatggttgat 175549 Query: 283 caatatccatgccatcgacacgaggggcgtggtcgacaagcctagctgcaccgagtgcaa 342 |||| | |||||||| ||||| ||||| | | ||||||||| | ||||| |||||||| Sbjct: 175550 caatgtgcatgccattgacacaaggggtgcgatcgacaagctaggatgcactgagtgcaa 175609 Query: 343 gtgcgactcttacaacgtcacaatcgatgagtatgggcgcacagtctcgaagaactacac 402 ||| || ||||||| | || ||||| ||||||||||||| | || | ||| |||||| Sbjct: 175610 gtgtgatctttacaacatgacgatcgacgagtatgggcgcaaactcccaaaggactacat 175669 Query: 403 tggtgggttgctttgctgctatgatcagacccagtgtcagctcaaggaagggttcaatgg 462 |||||| || ||||||||||||| |||| ||||| || | |||||||| ||||| || Sbjct: 175670 tggtggtttatattgctgctatgatgagacgcagtgcaaggttaaggaaggtttcaacgg 175729 Query: 463 cgaggtgcggacggtgttcttgcagtacaccgtgacttggctcgactggactgacgcggt 522 ||| | |||| | ||||||||| |||||| ||||| ||||| ||||||| ||| ||||| Sbjct: 175730 tgagctacggaagctgttcttgcggtacactgtgacgtggcttgactggagtgatgcggt 175789 Query: 523 ggtgcctgtcaagatctacatatttgacgttac 555 ||||| |||||||| ||||||||||| ||||| Sbjct: 175790 tgtgccagtcaagatttacatatttgatgttac 175822 Score = 79.8 bits (40), Expect = 9e-12 Identities = 55/60 (91%) Strand = Plus / Plus Query: 20 gtccctgtcccgctccatgagacttacctgcatcactgggttgcagtaccatactatgct 79 |||||||| ||||||||||| |||||||||||||||||||||| | ||||||||||||| Sbjct: 175284 gtccctgttccgctccatgatacttacctgcatcactgggttgtggaaccatactatgct 175343
>dbj|AK067831.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013121M08, full insert sequence Length = 1719 Score = 208 bits (105), Expect = 1e-50 Identities = 321/393 (81%) Strand = Plus / Plus Query: 163 ccagtacttcgggctcggttccgagactcgccacaccgccacatgggttcctgatcctta 222 |||||||| ||| || ||||| ||||||||||| || ||||||||||| ||||||||||| Sbjct: 429 ccagtactacggccttggttctgagactcgccatactgccacatgggtacctgatcctta 488 Query: 223 tggaattgagaccggcaaccaagagaaggcccctgaaggctatgaggagaaatggttgct 282 || || |||| || || | |||||| |||||||||| |||||||||||||||||| | Sbjct: 489 cggcatagagattggtaatccggagaagccccctgaaggatatgaggagaaatggttgat 548 Query: 283 caatatccatgccatcgacacgaggggcgtggtcgacaagcctagctgcaccgagtgcaa 342 |||| | |||||||| ||||| ||||| | | ||||||||| | ||||| |||||||| Sbjct: 549 caatgtgcatgccattgacacaaggggtgcgatcgacaagctaggatgcactgagtgcaa 608 Query: 343 gtgcgactcttacaacgtcacaatcgatgagtatgggcgcacagtctcgaagaactacac 402 ||| || ||||||| | || ||||| ||||||||||||| | || | ||| |||||| Sbjct: 609 gtgtgatctttacaacatgacgatcgacgagtatgggcgcaaactcccaaaggactacat 668 Query: 403 tggtgggttgctttgctgctatgatcagacccagtgtcagctcaaggaagggttcaatgg 462 |||||| || ||||||||||||| |||| ||||| || | |||||||| ||||| || Sbjct: 669 tggtggtttatattgctgctatgatgagacgcagtgcaaggttaaggaaggtttcaacgg 728 Query: 463 cgaggtgcggacggtgttcttgcagtacaccgtgacttggctcgactggactgacgcggt 522 ||| | |||| | ||||||||| |||||| ||||| ||||| ||||||| ||| ||||| Sbjct: 729 tgagctacggaagctgttcttgcggtacactgtgacgtggcttgactggagtgatgcggt 788 Query: 523 ggtgcctgtcaagatctacatatttgacgttac 555 ||||| |||||||| ||||||||||| ||||| Sbjct: 789 tgtgccagtcaagatttacatatttgatgttac 821 Score = 79.8 bits (40), Expect = 9e-12 Identities = 55/60 (91%) Strand = Plus / Plus Query: 20 gtccctgtcccgctccatgagacttacctgcatcactgggttgcagtaccatactatgct 79 |||||||| ||||||||||| |||||||||||||||||||||| | ||||||||||||| Sbjct: 283 gtccctgttccgctccatgatacttacctgcatcactgggttgtggaaccatactatgct 342
>dbj|AP004473.1| Lotus japonicus genomic DNA, chromosome 4, clone:LjT10J15, TM0007, complete sequence Length = 92741 Score = 50.1 bits (25), Expect = 0.008 Identities = 37/41 (90%) Strand = Plus / Minus Query: 257 gaaggctatgaggagaaatggttgctcaatatccatgccat 297 ||||| |||||||||||||||||||| ||| |||| ||||| Sbjct: 45077 gaagggtatgaggagaaatggttgctgaatgtccacgccat 45037 Score = 42.1 bits (21), Expect = 1.9 Identities = 36/41 (87%) Strand = Plus / Minus Query: 257 gaaggctatgaggagaaatggttgctcaatatccatgccat 297 ||||| ||||||||||||||| |||| ||| | |||||||| Sbjct: 52133 gaagggtatgaggagaaatggatgctgaatgtgcatgccat 52093
>ref|XM_530052.1| PREDICTED: Pan troglodytes LOC456137 (LOC456137), mRNA Length = 2270 Score = 40.1 bits (20), Expect = 7.6 Identities = 20/20 (100%) Strand = Plus / Plus Query: 266 gaggagaaatggttgctcaa 285 |||||||||||||||||||| Sbjct: 561 gaggagaaatggttgctcaa 580
>gb|AE017342.1| Cryptococcus neoformans var. neoformans JEC21 chromosome 2, complete sequence Length = 1632307 Score = 40.1 bits (20), Expect = 7.6 Identities = 20/20 (100%) Strand = Plus / Plus Query: 449 gaagggttcaatggcgaggt 468 |||||||||||||||||||| Sbjct: 1140062 gaagggttcaatggcgaggt 1140081
>gb|AC074212.5| Homo sapiens chromosome 19 clone LLNLF-145F10, complete sequence Length = 40311 Score = 40.1 bits (20), Expect = 7.6 Identities = 20/20 (100%) Strand = Plus / Plus Query: 266 gaggagaaatggttgctcaa 285 |||||||||||||||||||| Sbjct: 704 gaggagaaatggttgctcaa 723
>gb|AC126696.1| Homo sapiens chromosome 16 clone RP4-536B24, complete sequence Length = 108708 Score = 40.1 bits (20), Expect = 7.6 Identities = 20/20 (100%) Strand = Plus / Plus Query: 234 ccggcaaccaagagaaggcc 253 |||||||||||||||||||| Sbjct: 53331 ccggcaaccaagagaaggcc 53350
>ref|XM_944980.1| PREDICTED: Homo sapiens hypothetical LOC388553 (LOC388553), mRNA Length = 1776 Score = 40.1 bits (20), Expect = 7.6 Identities = 20/20 (100%) Strand = Plus / Plus Query: 266 gaggagaaatggttgctcaa 285 |||||||||||||||||||| Sbjct: 4 gaggagaaatggttgctcaa 23
>ref|XM_373809.3| PREDICTED: Homo sapiens hypothetical LOC388553 (LOC388553), mRNA Length = 1776 Score = 40.1 bits (20), Expect = 7.6 Identities = 20/20 (100%) Strand = Plus / Plus Query: 266 gaggagaaatggttgctcaa 285 |||||||||||||||||||| Sbjct: 4 gaggagaaatggttgctcaa 23
>dbj|AP008218.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 12, complete sequence Length = 27566993 Score = 40.1 bits (20), Expect = 7.6 Identities = 20/20 (100%) Strand = Plus / Minus Query: 310 cgtggtcgacaagcctagct 329 |||||||||||||||||||| Sbjct: 25696351 cgtggtcgacaagcctagct 25696332
>gb|AC122918.4| Mus musculus chromosome 6 clone RP23-29F15, complete sequence Length = 210315 Score = 40.1 bits (20), Expect = 7.6 Identities = 20/20 (100%) Strand = Plus / Plus Query: 431 acccagtgtcagctcaagga 450 |||||||||||||||||||| Sbjct: 101908 acccagtgtcagctcaagga 101927
>gb|AC007774.1|AC007774 Homo sapiens chromosome 19, cosmid R26955, complete sequence Length = 44936 Score = 40.1 bits (20), Expect = 7.6 Identities = 20/20 (100%) Strand = Plus / Plus Query: 266 gaggagaaatggttgctcaa 285 |||||||||||||||||||| Sbjct: 21953 gaggagaaatggttgctcaa 21972
>gb|DP000011.1| Oryza sativa (japonica cultivar-group) chromosome 12, complete sequence Length = 27492551 Score = 40.1 bits (20), Expect = 7.6 Identities = 20/20 (100%) Strand = Plus / Minus Query: 310 cgtggtcgacaagcctagct 329 |||||||||||||||||||| Sbjct: 25624527 cgtggtcgacaagcctagct 25624508
>emb|AL731881.4|CNS08C8L Oryza sativa chromosome 12, . BAC OSJNBa0002L05 of library OSJNBa from chromosome 12 of cultivar Nipponbare of ssp. japonica of Oryza sativa (rice), complete sequence Length = 167131 Score = 40.1 bits (20), Expect = 7.6 Identities = 20/20 (100%) Strand = Plus / Minus Query: 310 cgtggtcgacaagcctagct 329 |||||||||||||||||||| Sbjct: 63589 cgtggtcgacaagcctagct 63570 Database: nt Posted date: May 29, 2006 11:10 AM Number of letters in database: 3,984,495,279 Number of sequences in database: 917,343 Database: /shigen/export/home/twatanab/db/nt/nt.01 Posted date: May 29, 2006 11:16 AM Number of letters in database: 3,988,174,986 Number of sequences in database: 835,257 Database: /shigen/export/home/twatanab/db/nt/nt.02 Posted date: May 29, 2006 11:21 AM Number of letters in database: 3,991,246,324 Number of sequences in database: 771,481 Database: /shigen/export/home/twatanab/db/nt/nt.03 Posted date: May 29, 2006 11:27 AM Number of letters in database: 3,990,718,311 Number of sequences in database: 977,174 Database: /shigen/export/home/twatanab/db/nt/nt.04 Posted date: May 29, 2006 11:29 AM Number of letters in database: 1,278,410,368 Number of sequences in database: 400,813 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 3,185,806 Number of Sequences: 3902068 Number of extensions: 3185806 Number of successful extensions: 55511 Number of sequences better than 10.0: 17 Number of HSP's better than 10.0 without gapping: 17 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 55444 Number of HSP's gapped (non-prelim): 62 length of query: 558 length of database: 17,233,045,268 effective HSP length: 23 effective length of query: 535 effective length of database: 17,143,297,704 effective search space: 9171664271640 effective search space used: 9171664271640 T: 0 A: 0 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 20 (40.1 bits)
