ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日:2016年5月1日

Clone Information

BLAST Search Result

Clone Name bags8i16
Clone Library Name barley_pub

No. Definition Score
(bits)
E
Value
1gb|BT009646.1| Triticum aestivum clone wrsu1.pk0006.a3:fis, full... 535 e-149
2ref|XM_464784.1| Oryza sativa (japonica cultivar-group), mRNA 170 3e-39
3gb|AY568677.1| Oryza sativa (japonica cultivar-group) proline- a... 147 4e-32
4dbj|AP008208.1| Oryza sativa (japonica cultivar-group) genomic D... 121 3e-24
5dbj|AP005756.3| Oryza sativa (japonica cultivar-group) genomic D... 121 3e-24
6dbj|AK058752.1| Oryza sativa (japonica cultivar-group) cDNA clon... 72 2e-09
7gb|AC010242.7| Homo sapiens chromosome 5 clone CTC-359E10, compl... 46 0.12
8gb|AC008816.8| Homo sapiens chromosome 5 clone CTD-2122K17, comp... 46 0.12
9gb|AC010280.7| Homo sapiens chromosome 5 clone CTC-537E7, comple... 46 0.12
10gb|AC017093.3|AC017093 Homo sapiens BAC clone RP11-511G7 from 5,... 46 0.12
11gb|AC118627.6| Mus musculus chromosome 15, clone RP24-91E8, comp... 42 1.9
12gb|AY582740.1| Chlamydomonas reinhardtii Fe-hydrogenase assembly... 42 1.9
13gb|AC129886.3| Atelerix albiventris clone LB4-234A16, complete s... 42 1.9
14gb|AC159301.2| Mus musculus BAC clone RP23-213B1 from chromosome... 42 1.9
15gb|DP000003.1| Atelerix albiventris target 1 genomic scaffold 42 1.9
16gb|AC137970.10| Mus musculus chromosome 3, clone RP23-438E13, co... 40 7.5
17gb|AC115865.9| Mus musculus chromosome 3, clone RP24-314I8, comp... 40 7.5
18gb|AC145959.3| Gallus gallus chromosome UNK clone CH261-17M10, c... 40 7.5
19gb|AC156980.9| Mus musculus chromosome 1, clone RP23-191A12, com... 40 7.5
20gb|AC011558.6| Homo sapiens chromosome 19 clone LLNLR-291F12, co... 40 7.5
21gb|AC148763.14| Medicago truncatula clone mth2-29o24, complete s... 40 7.5
22emb|BX470154.5| Zebrafish DNA sequence from clone CH211-81N22, c... 40 7.5
23gb|AC093066.2| Homo sapiens chromosome 19 clone LLNLR-237C1, com... 40 7.5
24gb|AC093597.3| Homo sapiens BAC clone RP11-187O17 from 4, comple... 40 7.5
25gb|AF142686.1| Cyclolobium nutans maturase-like protein (matK) g... 40 7.5
26gb|AE008384.1| Methanosarcina mazei strain Goe1, complete genome 40 7.5
27emb|AJ342722.1|HSA342722 Homo sapiens genomic sequence surroundi... 40 7.5

>gb|BT009646.1| Triticum aestivum clone wrsu1.pk0006.a3:fis, full insert mRNA
           sequence
          Length = 936

 Score =  535 bits (270), Expect = e-149
 Identities = 291/298 (97%)
 Strand = Plus / Minus

                                                                       
Query: 254 ccgacgccatcttacggcactacaccgacgccatcttatggcactacaccgacgccatct 313
           ||||||||| |||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct: 660 ccgacgccaacttacggcactacaccgacgccatcttacggcactacaccgacgccatct 601

                                                                       
Query: 314 tacggcactacaccgagcaccccaagtacaccttcccatgaagtccctgcaagtccaaag 373
           ||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct: 600 tacggcactacaccgagcaccccaagtacaccttcccatgatgtccctgcaagtccaaag 541

                                                                       
Query: 374 aagcatggattcattggatcctgcgacttctggaagaatcacccagacgctataattgca 433
           |||||||| ||||||||||||||||||| |||||||||||||||||| |||||| |||||
Sbjct: 540 aagcatgggttcattggatcctgcgactactggaagaatcacccagatgctatagttgca 481

                                                                       
Query: 434 gctattgggtcccttggcaacatcggcaagacatttggtgctgcatgcagtatgataggt 493
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 480 gctattgggtcccttggcaacatcggcaagacatttggtgctgcatgcagtatgataggt 421

                                                                     
Query: 494 ggcaagaagctaggaaatatgcatgatgcactctcaaacactagaactgatggtattg 551
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 420 ggcaagaagctaggaaatatgcatgatgcactctcaaacactagaactgatggtattg 363



 Score =  242 bits (122), Expect = 1e-60
 Identities = 154/165 (93%), Gaps = 6/165 (3%)
 Strand = Plus / Minus

                                                                       
Query: 165 cccactatgggggctcaccaactccctcgcatgggtcaggaggaggctacaacccgacac 224
           |||||||||||||||||||||||||| ||||||||||||||||||||||||| |||||||
Sbjct: 767 cccactatgggggctcaccaactcccacgcatgggtcaggaggaggctacaatccgacac 708

                                                                       
Query: 225 cgacaccaacttacggtactacaccaacgccgacgccatcttacggcactacaccgacgc 284
           |||||||||||||||| ||||||      |||||||||||||||||||||||||||||||
Sbjct: 707 cgacaccaacttacggcactaca------ccgacgccatcttacggcactacaccgacgc 654

                                                        
Query: 285 catcttatggcactacaccgacgccatcttacggcactacaccga 329
           || |||| |||||||||||||||||||||||||||||||||||||
Sbjct: 653 caacttacggcactacaccgacgccatcttacggcactacaccga 609



 Score =  180 bits (91), Expect = 3e-42
 Identities = 135/148 (91%), Gaps = 4/148 (2%)
 Strand = Plus / Minus

                                                                       
Query: 1   ttcagttcagttgcttattctgttgtctactctgcacatactgagnagcaagnagggtgg 60
           |||||||||||||||||||||||   ||   ||||||| |||||| ||||||  ||||||
Sbjct: 909 ttcagttcagttgcttattctgt---cttgcctgcacacactgag-agcaagatgggtgg 854

                                                                       
Query: 61  caaggttcttctgatgagtgctgtcttggtggggcttgtttcactgagctcctgcaggag 120
           ||||||||||||||| ||||| ||||||||||||||||||||||||||||| ||||||||
Sbjct: 853 caaggttcttctgatcagtgccgtcttggtggggcttgtttcactgagctcgtgcaggag 794

                                       
Query: 121 cctgggagagttgcatgagcagaagacc 148
           ||||||||||||||||||||||||||||
Sbjct: 793 cctgggagagttgcatgagcagaagacc 766



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>ref|XM_464784.1| Oryza sativa (japonica cultivar-group),  mRNA
          Length = 660

 Score =  170 bits (86), Expect = 3e-39
 Identities = 238/289 (82%), Gaps = 6/289 (2%)
 Strand = Plus / Plus

                                                                       
Query: 260 ccatcttacggcactacaccgacgccatcttatggcactacaccgacgccatcttacggc 319
           |||||||| ||||||||||| || |||||||| ||||||||||| || ||||||||||||
Sbjct: 205 ccatcttatggcactacaccaacaccatcttacggcactacaccaacaccatcttacggc 264

                                                                       
Query: 320 actacaccgagcaccccaagtacaccttcccatgaagtccctgcaagtccaaagaagcat 379
           || ||||| |||||||| || |||||      ||| ||||||| |  ||| |  ||||||
Sbjct: 265 acgacaccaagcacccccagcacacc------tgatgtccctgaagttccgacaaagcat 318

                                                                       
Query: 380 ggattcattggatcctgcgacttctggaagaatcacccagacgctataattgcagctatt 439
           |  |||  |||||||||||| | ||||||||| || ||||| | ||| ||  ||||||||
Sbjct: 319 gatttctgtggatcctgcgattactggaagaaccatccagatgttatcatctcagctatt 378

                                                                       
Query: 440 gggtcccttggcaacatcggcaagacatttggtgctgcatgcagtatgataggtggcaag 499
           |||||||||||| |||| ||||||||| | ||| |||| |||||| ||||   |||||||
Sbjct: 379 gggtcccttggcgacattggcaagacactcggtactgcttgcagtttgatcactggcaag 438

                                                            
Query: 500 aagctaggaaatatgcatgatgcactctcaaacactagaactgatggta 548
           ||||||| |||| | ||||||||||| ||||||||| ||||||||||||
Sbjct: 439 aagctagaaaatcttcatgatgcactttcaaacactggaactgatggta 487



 Score =  117 bits (59), Expect = 4e-23
 Identities = 92/103 (89%)
 Strand = Plus / Plus

                                                                       
Query: 60  gcaaggttcttctgatgagtgctgtcttggtggggcttgtttcactgagctcctgcagga 119
           |||||||||||||||| |||| |||| ||||||||||  |||| |||||||| |||||||
Sbjct: 8   gcaaggttcttctgatcagtggtgtcctggtggggctcctttctctgagctcatgcagga 67

                                                      
Query: 120 gcctgggagagttgcatgagcagaagacctactcttcttctac 162
           ||||||||||||||  ||| |||||||||||||||||| ||||
Sbjct: 68  gcctgggagagttgtctgaacagaagacctactcttctactac 110



 Score = 93.7 bits (47), Expect = 6e-16
 Identities = 74/83 (89%)
 Strand = Plus / Plus

                                                                       
Query: 245 acaccaacgccgacgccatcttacggcactacaccgacgccatcttatggcactacaccg 304
           |||||||| || || ||| |||||||| ||||||| || |||||||||||||||||||| 
Sbjct: 166 acaccaaccccaacaccagcttacggctctacaccaacaccatcttatggcactacacca 225

                                  
Query: 305 acgccatcttacggcactacacc 327
           || ||||||||||||||||||||
Sbjct: 226 acaccatcttacggcactacacc 248



 Score = 40.1 bits (20), Expect = 7.5
 Identities = 29/32 (90%)
 Strand = Plus / Plus

                                           
Query: 221 acaccgacaccaacttacggtactacaccaac 252
           ||||| |||||| ||||||| |||||||||||
Sbjct: 220 acaccaacaccatcttacggcactacaccaac 251



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>gb|AY568677.1| Oryza sativa (japonica cultivar-group) proline- and threonine-rich
           protein mRNA, complete cds
          Length = 902

 Score =  147 bits (74), Expect = 4e-32
 Identities = 235/289 (81%), Gaps = 6/289 (2%)
 Strand = Plus / Plus

                                                                       
Query: 260 ccatcttacggcactacaccgacgccatcttatggcactacaccgacgccatcttacggc 319
           |||||||| ||||||||||| || |||||||| ||||||||||| || ||||||||||||
Sbjct: 269 ccatcttatggcactacaccaacaccatcttacggcactacaccaacaccatcttacggc 328

                                                                       
Query: 320 actacaccgagcaccccaagtacaccttcccatgaagtccctgcaagtccaaagaagcat 379
           || ||||| ||| |||| || |||||      ||| ||||||| |  ||| |  ||||||
Sbjct: 329 acgacaccaagctcccccagcacacc------tgatgtccctgaagttccgacaaagcat 382

                                                                       
Query: 380 ggattcattggatcctgcgacttctggaagaatcacccagacgctataattgcagctatt 439
           |  |||  |||||||||||| | ||||||||| || ||||| | ||| ||  ||||||||
Sbjct: 383 gatttctgtggatcctgcgattactggaagaaccatccagatgttatcatctcagctatt 442

                                                                       
Query: 440 gggtcccttggcaacatcggcaagacatttggtgctgcatgcagtatgataggtggcaag 499
           |||||||||||| |||| |||| |||| | | | |||| |||||| ||||   |||||||
Sbjct: 443 gggtcccttggcgacattggcatgacactcgatactgcttgcagtttgatcactggcaag 502

                                                            
Query: 500 aagctaggaaatatgcatgatgcactctcaaacactagaactgatggta 548
           ||||||| |||| | ||||||||||| ||||||||| ||||||||||||
Sbjct: 503 aagctagaaaatcttcatgatgcactttcaaacactggaactgatggta 551



 Score =  121 bits (61), Expect = 3e-24
 Identities = 119/139 (85%)
 Strand = Plus / Plus

                                                                       
Query: 24  tgtctactctgcacatactgagnagcaagnagggtggcaaggttcttctgatgagtgctg 83
           ||||| ||||||| ||||||||   ||||  | || |||||||||||||||| |||| ||
Sbjct: 36  tgtcttctctgcagatactgagagccaagatgagtagcaaggttcttctgatcagtggtg 95

                                                                       
Query: 84  tcttggtggggcttgtttcactgagctcctgcaggagcctgggagagttgcatgagcaga 143
           || ||||||||||  |||| |||||||| |||||||||||||||||||||  ||| ||||
Sbjct: 96  tcctggtggggctcctttctctgagctcatgcaggagcctgggagagttgtctgaacaga 155

                              
Query: 144 agacctactcttcttctac 162
           |||||||||||||| ||||
Sbjct: 156 agacctactcttctactac 174



 Score = 93.7 bits (47), Expect = 6e-16
 Identities = 74/83 (89%)
 Strand = Plus / Plus

                                                                       
Query: 245 acaccaacgccgacgccatcttacggcactacaccgacgccatcttatggcactacaccg 304
           |||||||| || || ||| |||||||| ||||||| || |||||||||||||||||||| 
Sbjct: 230 acaccaaccccaacaccagcttacggctctacaccaacaccatcttatggcactacacca 289

                                  
Query: 305 acgccatcttacggcactacacc 327
           || ||||||||||||||||||||
Sbjct: 290 acaccatcttacggcactacacc 312



 Score = 40.1 bits (20), Expect = 7.5
 Identities = 29/32 (90%)
 Strand = Plus / Plus

                                           
Query: 221 acaccgacaccaacttacggtactacaccaac 252
           ||||| |||||| ||||||| |||||||||||
Sbjct: 284 acaccaacaccatcttacggcactacaccaac 315



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>dbj|AP008208.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, complete
               sequence
          Length = 35954743

 Score =  121 bits (61), Expect = 3e-24
 Identities = 119/139 (85%)
 Strand = Plus / Minus

                                                                           
Query: 24      tgtctactctgcacatactgagnagcaagnagggtggcaaggttcttctgatgagtgctg 83
               ||||| ||||||| ||||||||   ||||  | || |||||||||||||||| |||| ||
Sbjct: 7324237 tgtcttctctgcagatactgagagccaagatgagtagcaaggttcttctgatcagtggtg 7324178

                                                                           
Query: 84      tcttggtggggcttgtttcactgagctcctgcaggagcctgggagagttgcatgagcaga 143
               || ||||||||||  |||| |||||||| |||||||||||||||||||||  ||| ||||
Sbjct: 7324177 tcctggtggggctcctttctctgagctcatgcaggagcctgggagagttgtctgaacaga 7324118

                                  
Query: 144     agacctactcttcttctac 162
               |||||||||||||| ||||
Sbjct: 7324117 agacctactcttctactac 7324099



 Score =  115 bits (58), Expect = 2e-22
 Identities = 124/146 (84%)
 Strand = Plus / Minus

                                                                           
Query: 403     ctggaagaatcacccagacgctataattgcagctattgggtcccttggcaacatcggcaa 462
               ||||||||| || ||||| | ||| ||  |||||||||||||||||||| |||| |||||
Sbjct: 7323474 ctggaagaaccatccagatgttatcatctcagctattgggtcccttggcgacattggcaa 7323415

                                                                           
Query: 463     gacatttggtgctgcatgcagtatgataggtggcaagaagctaggaaatatgcatgatgc 522
               |||| | ||| |||| |||||| ||||   |||||||||||||| |||| | ||||||||
Sbjct: 7323414 gacactcggtactgcttgcagtttgatcactggcaagaagctagaaaatcttcatgatgc 7323355

                                         
Query: 523     actctcaaacactagaactgatggta 548
               ||| ||||||||| ||||||||||||
Sbjct: 7323354 actttcaaacactggaactgatggta 7323329



 Score = 93.7 bits (47), Expect = 6e-16
 Identities = 74/83 (89%)
 Strand = Plus / Minus

                                                                           
Query: 245     acaccaacgccgacgccatcttacggcactacaccgacgccatcttatggcactacaccg 304
               |||||||| || || ||| |||||||| ||||||| || |||||||||||||||||||| 
Sbjct: 7323735 acaccaaccccaacaccagcttacggctctacaccaacaccatcttatggcactacacca 7323676

                                      
Query: 305     acgccatcttacggcactacacc 327
               || ||||||||||||||||||||
Sbjct: 7323675 acaccatcttacggcactacacc 7323653



 Score = 93.7 bits (47), Expect = 6e-16
 Identities = 77/87 (88%)
 Strand = Plus / Minus

                                                                           
Query: 260     ccatcttacggcactacaccgacgccatcttatggcactacaccgacgccatcttacggc 319
               |||||||| ||||||||||| || |||||||| ||||||||||| || ||||||||||||
Sbjct: 7323696 ccatcttatggcactacaccaacaccatcttacggcactacaccaacaccatcttacggc 7323637

                                          
Query: 320     actacaccgagcaccccaagtacacct 346
               || ||||| |||||||| || ||||||
Sbjct: 7323636 acgacaccaagcacccccagcacacct 7323610



 Score = 40.1 bits (20), Expect = 7.5
 Identities = 29/32 (90%)
 Strand = Plus / Minus

                                               
Query: 221     acaccgacaccaacttacggtactacaccaac 252
               ||||| |||||| ||||||| |||||||||||
Sbjct: 7323681 acaccaacaccatcttacggcactacaccaac 7323650



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>dbj|AP005756.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, BAC
              clone:OSJNBb0035N08
          Length = 136267

 Score =  121 bits (61), Expect = 3e-24
 Identities = 119/139 (85%)
 Strand = Plus / Minus

                                                                          
Query: 24     tgtctactctgcacatactgagnagcaagnagggtggcaaggttcttctgatgagtgctg 83
              ||||| ||||||| ||||||||   ||||  | || |||||||||||||||| |||| ||
Sbjct: 100045 tgtcttctctgcagatactgagagccaagatgagtagcaaggttcttctgatcagtggtg 99986

                                                                          
Query: 84     tcttggtggggcttgtttcactgagctcctgcaggagcctgggagagttgcatgagcaga 143
              || ||||||||||  |||| |||||||| |||||||||||||||||||||  ||| ||||
Sbjct: 99985  tcctggtggggctcctttctctgagctcatgcaggagcctgggagagttgtctgaacaga 99926

                                 
Query: 144    agacctactcttcttctac 162
              |||||||||||||| ||||
Sbjct: 99925  agacctactcttctactac 99907



 Score =  115 bits (58), Expect = 2e-22
 Identities = 124/146 (84%)
 Strand = Plus / Minus

                                                                         
Query: 403   ctggaagaatcacccagacgctataattgcagctattgggtcccttggcaacatcggcaa 462
             ||||||||| || ||||| | ||| ||  |||||||||||||||||||| |||| |||||
Sbjct: 99282 ctggaagaaccatccagatgttatcatctcagctattgggtcccttggcgacattggcaa 99223

                                                                         
Query: 463   gacatttggtgctgcatgcagtatgataggtggcaagaagctaggaaatatgcatgatgc 522
             |||| | ||| |||| |||||| ||||   |||||||||||||| |||| | ||||||||
Sbjct: 99222 gacactcggtactgcttgcagtttgatcactggcaagaagctagaaaatcttcatgatgc 99163

                                       
Query: 523   actctcaaacactagaactgatggta 548
             ||| ||||||||| ||||||||||||
Sbjct: 99162 actttcaaacactggaactgatggta 99137



 Score = 93.7 bits (47), Expect = 6e-16
 Identities = 74/83 (89%)
 Strand = Plus / Minus

                                                                         
Query: 245   acaccaacgccgacgccatcttacggcactacaccgacgccatcttatggcactacaccg 304
             |||||||| || || ||| |||||||| ||||||| || |||||||||||||||||||| 
Sbjct: 99543 acaccaaccccaacaccagcttacggctctacaccaacaccatcttatggcactacacca 99484

                                    
Query: 305   acgccatcttacggcactacacc 327
             || ||||||||||||||||||||
Sbjct: 99483 acaccatcttacggcactacacc 99461



 Score = 93.7 bits (47), Expect = 6e-16
 Identities = 77/87 (88%)
 Strand = Plus / Minus

                                                                         
Query: 260   ccatcttacggcactacaccgacgccatcttatggcactacaccgacgccatcttacggc 319
             |||||||| ||||||||||| || |||||||| ||||||||||| || ||||||||||||
Sbjct: 99504 ccatcttatggcactacaccaacaccatcttacggcactacaccaacaccatcttacggc 99445

                                        
Query: 320   actacaccgagcaccccaagtacacct 346
             || ||||| |||||||| || ||||||
Sbjct: 99444 acgacaccaagcacccccagcacacct 99418



 Score = 40.1 bits (20), Expect = 7.5
 Identities = 29/32 (90%)
 Strand = Plus / Minus

                                             
Query: 221   acaccgacaccaacttacggtactacaccaac 252
             ||||| |||||| ||||||| |||||||||||
Sbjct: 99489 acaccaacaccatcttacggcactacaccaac 99458



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>dbj|AK058752.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-019-H10, full
           insert sequence
          Length = 377

 Score = 71.9 bits (36), Expect = 2e-09
 Identities = 51/56 (91%)
 Strand = Plus / Plus

                                                                   
Query: 493 tggcaagaagctaggaaatatgcatgatgcactctcaaacactagaactgatggta 548
           |||||||||||||| |||| | ||||||||||| ||||||||| ||||||||||||
Sbjct: 9   tggcaagaagctagaaaatcttcatgatgcactttcaaacactggaactgatggta 64



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>gb|AC010242.7| Homo sapiens chromosome 5 clone CTC-359E10, complete sequence
          Length = 174293

 Score = 46.1 bits (23), Expect = 0.12
 Identities = 23/23 (100%)
 Strand = Plus / Plus

                                    
Query: 367   tccaaagaagcatggattcattg 389
             |||||||||||||||||||||||
Sbjct: 29024 tccaaagaagcatggattcattg 29046



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>gb|AC008816.8| Homo sapiens chromosome 5 clone CTD-2122K17, complete sequence
          Length = 174293

 Score = 46.1 bits (23), Expect = 0.12
 Identities = 23/23 (100%)
 Strand = Plus / Plus

                                    
Query: 367   tccaaagaagcatggattcattg 389
             |||||||||||||||||||||||
Sbjct: 29024 tccaaagaagcatggattcattg 29046



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>gb|AC010280.7| Homo sapiens chromosome 5 clone CTC-537E7, complete sequence
          Length = 133790

 Score = 46.1 bits (23), Expect = 0.12
 Identities = 23/23 (100%)
 Strand = Plus / Minus

                                    
Query: 367   tccaaagaagcatggattcattg 389
             |||||||||||||||||||||||
Sbjct: 43691 tccaaagaagcatggattcattg 43669



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>gb|AC017093.3|AC017093 Homo sapiens BAC clone RP11-511G7 from 5, complete sequence
          Length = 203043

 Score = 46.1 bits (23), Expect = 0.12
 Identities = 23/23 (100%)
 Strand = Plus / Plus

                                    
Query: 367   tccaaagaagcatggattcattg 389
             |||||||||||||||||||||||
Sbjct: 91385 tccaaagaagcatggattcattg 91407



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>gb|AC118627.6| Mus musculus chromosome 15, clone RP24-91E8, complete sequence
          Length = 256158

 Score = 42.1 bits (21), Expect = 1.9
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                   
Query: 343    accttcccatgaagtccctgc 363
              |||||||||||||||||||||
Sbjct: 115173 accttcccatgaagtccctgc 115193



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>gb|AY582740.1| Chlamydomonas reinhardtii Fe-hydrogenase assembly protein (HydG)
           mRNA, complete cds
          Length = 1704

 Score = 42.1 bits (21), Expect = 1.9
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                
Query: 327 cgagcaccccaagtacacctt 347
           |||||||||||||||||||||
Sbjct: 675 cgagcaccccaagtacacctt 695



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>gb|AC129886.3| Atelerix albiventris clone LB4-234A16, complete sequence
          Length = 176448

 Score = 42.1 bits (21), Expect = 1.9
 Identities = 24/25 (96%)
 Strand = Plus / Plus

                                      
Query: 518   gatgcactctcaaacactagaactg 542
             ||||||||||||||| |||||||||
Sbjct: 18448 gatgcactctcaaactctagaactg 18472



 Score = 42.1 bits (21), Expect = 1.9
 Identities = 24/25 (96%)
 Strand = Plus / Minus

                                      
Query: 518   gatgcactctcaaacactagaactg 542
             ||||||||||||||| |||||||||
Sbjct: 17278 gatgcactctcaaactctagaactg 17254



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>gb|AC159301.2| Mus musculus BAC clone RP23-213B1 from chromosome 13, complete sequence
          Length = 188633

 Score = 42.1 bits (21), Expect = 1.9
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                   
Query: 499    gaagctaggaaatatgcatga 519
              |||||||||||||||||||||
Sbjct: 108440 gaagctaggaaatatgcatga 108420



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>gb|DP000003.1| Atelerix albiventris target 1 genomic scaffold
          Length = 2136267

 Score = 42.1 bits (21), Expect = 1.9
 Identities = 24/25 (96%)
 Strand = Plus / Plus

                                       
Query: 518    gatgcactctcaaacactagaactg 542
              ||||||||||||||| |||||||||
Sbjct: 627720 gatgcactctcaaactctagaactg 627744



 Score = 42.1 bits (21), Expect = 1.9
 Identities = 24/25 (96%)
 Strand = Plus / Minus

                                       
Query: 518    gatgcactctcaaacactagaactg 542
              ||||||||||||||| |||||||||
Sbjct: 626550 gatgcactctcaaactctagaactg 626526



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>gb|AC137970.10| Mus musculus chromosome 3, clone RP23-438E13, complete sequence
          Length = 212827

 Score = 40.1 bits (20), Expect = 7.5
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 20     ctgttgtctactctgcacat 39
              ||||||||||||||||||||
Sbjct: 177039 ctgttgtctactctgcacat 177020



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>gb|AC115865.9| Mus musculus chromosome 3, clone RP24-314I8, complete sequence
          Length = 200362

 Score = 40.1 bits (20), Expect = 7.5
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 20    ctgttgtctactctgcacat 39
             ||||||||||||||||||||
Sbjct: 81167 ctgttgtctactctgcacat 81148



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>gb|AC145959.3| Gallus gallus chromosome UNK clone CH261-17M10, complete sequence
          Length = 183075

 Score = 40.1 bits (20), Expect = 7.5
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 12    tgcttattctgttgtctact 31
             ||||||||||||||||||||
Sbjct: 86325 tgcttattctgttgtctact 86344



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>gb|AC156980.9| Mus musculus chromosome 1, clone RP23-191A12, complete sequence
          Length = 224673

 Score = 40.1 bits (20), Expect = 7.5
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                      
Query: 55     gggtggcaaggttcttctgatgag 78
              |||||||||||||| |||||||||
Sbjct: 168931 gggtggcaaggttcatctgatgag 168954



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>gb|AC011558.6| Homo sapiens chromosome 19 clone LLNLR-291F12, complete sequence
          Length = 43128

 Score = 40.1 bits (20), Expect = 7.5
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 109   ctcctgcaggagcctgggag 128
             ||||||||||||||||||||
Sbjct: 42852 ctcctgcaggagcctgggag 42833



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>gb|AC148763.14| Medicago truncatula clone mth2-29o24, complete sequence
          Length = 104879

 Score = 40.1 bits (20), Expect = 7.5
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 215   aacccgacaccgacaccaac 234
             ||||||||||||||||||||
Sbjct: 15886 aacccgacaccgacaccaac 15867



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>emb|BX470154.5| Zebrafish DNA sequence from clone CH211-81N22, complete sequence
          Length = 158249

 Score = 40.1 bits (20), Expect = 7.5
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 469    tggtgctgcatgcagtatga 488
              ||||||||||||||||||||
Sbjct: 114553 tggtgctgcatgcagtatga 114572



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>gb|AC093066.2| Homo sapiens chromosome 19 clone LLNLR-237C1, complete sequence
          Length = 5054

 Score = 40.1 bits (20), Expect = 7.5
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 109  ctcctgcaggagcctgggag 128
            ||||||||||||||||||||
Sbjct: 1337 ctcctgcaggagcctgggag 1318



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>gb|AC093597.3| Homo sapiens BAC clone RP11-187O17 from 4, complete sequence
          Length = 17211

 Score = 40.1 bits (20), Expect = 7.5
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 343   accttcccatgaagtccctg 362
             ||||||||||||||||||||
Sbjct: 10846 accttcccatgaagtccctg 10827



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>gb|AF142686.1| Cyclolobium nutans maturase-like protein (matK) gene, complete cds;
           chloroplast gene for chloroplast product
          Length = 2503

 Score = 40.1 bits (20), Expect = 7.5
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                   
Query: 369 caaagaagcatggattcattggat 392
           |||||||||| |||||||||||||
Sbjct: 701 caaagaagcagggattcattggat 678



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>gb|AE008384.1| Methanosarcina mazei strain Goe1, complete genome
          Length = 4096345

 Score = 40.1 bits (20), Expect = 7.5
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                   
Query: 371     aagaagcatggattcattgg 390
               ||||||||||||||||||||
Sbjct: 2827466 aagaagcatggattcattgg 2827485



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>emb|AJ342722.1|HSA342722 Homo sapiens genomic sequence surrounding NotI site, clone NR1-JG2R
          Length = 788

 Score = 40.1 bits (20), Expect = 7.5
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 109 ctcctgcaggagcctgggag 128
           ||||||||||||||||||||
Sbjct: 467 ctcctgcaggagcctgggag 448


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 3,909,296
Number of Sequences: 3902068
Number of extensions: 3909296
Number of successful extensions: 69551
Number of sequences better than 10.0: 27
Number of HSP's better than 10.0 without gapping: 27
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 69442
Number of HSP's gapped (non-prelim): 93
length of query: 551
length of database: 17,233,045,268
effective HSP length: 23
effective length of query: 528
effective length of database: 17,143,297,704
effective search space: 9051661187712
effective search space used: 9051661187712
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)
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