No.
Definition
Score (bits)
E Value
1 gb|BT009646.1| Triticum aestivum clone wrsu1.pk0006.a3:fis, full...
535
e-149
2 ref|XM_464784.1| Oryza sativa (japonica cultivar-group), mRNA
170
3e-39
3 gb|AY568677.1| Oryza sativa (japonica cultivar-group) proline- a...
147
4e-32
4 dbj|AP008208.1| Oryza sativa (japonica cultivar-group) genomic D...
121
3e-24
5 dbj|AP005756.3| Oryza sativa (japonica cultivar-group) genomic D...
121
3e-24
6 dbj|AK058752.1| Oryza sativa (japonica cultivar-group) cDNA clon...
72
2e-09
7 gb|AC010242.7| Homo sapiens chromosome 5 clone CTC-359E10, compl...
46
0.12
8 gb|AC008816.8| Homo sapiens chromosome 5 clone CTD-2122K17, comp...
46
0.12
9 gb|AC010280.7| Homo sapiens chromosome 5 clone CTC-537E7, comple...
46
0.12
10 gb|AC017093.3|AC017093 Homo sapiens BAC clone RP11-511G7 from 5,...
46
0.12
11 gb|AC118627.6| Mus musculus chromosome 15, clone RP24-91E8, comp...
42
1.9
12 gb|AY582740.1| Chlamydomonas reinhardtii Fe-hydrogenase assembly...
42
1.9
13 gb|AC129886.3| Atelerix albiventris clone LB4-234A16, complete s...
42
1.9
14 gb|AC159301.2| Mus musculus BAC clone RP23-213B1 from chromosome...
42
1.9
15 gb|DP000003.1| Atelerix albiventris target 1 genomic scaffold
42
1.9
16 gb|AC137970.10| Mus musculus chromosome 3, clone RP23-438E13, co...
40
7.5
17 gb|AC115865.9| Mus musculus chromosome 3, clone RP24-314I8, comp...
40
7.5
18 gb|AC145959.3| Gallus gallus chromosome UNK clone CH261-17M10, c...
40
7.5
19 gb|AC156980.9| Mus musculus chromosome 1, clone RP23-191A12, com...
40
7.5
20 gb|AC011558.6| Homo sapiens chromosome 19 clone LLNLR-291F12, co...
40
7.5
21 gb|AC148763.14| Medicago truncatula clone mth2-29o24, complete s...
40
7.5
22 emb|BX470154.5| Zebrafish DNA sequence from clone CH211-81N22, c...
40
7.5
23 gb|AC093066.2| Homo sapiens chromosome 19 clone LLNLR-237C1, com...
40
7.5
24 gb|AC093597.3| Homo sapiens BAC clone RP11-187O17 from 4, comple...
40
7.5
25 gb|AF142686.1| Cyclolobium nutans maturase-like protein (matK) g...
40
7.5
26 gb|AE008384.1| Methanosarcina mazei strain Goe1, complete genome
40
7.5
27 emb|AJ342722.1|HSA342722 Homo sapiens genomic sequence surroundi...
40
7.5
>gb|BT009646.1 | Triticum aestivum clone wrsu1.pk0006.a3:fis, full insert mRNA
sequence
Length = 936
Score = 535 bits (270), Expect = e-149
Identities = 291/298 (97%)
Strand = Plus / Minus
Query: 254 ccgacgccatcttacggcactacaccgacgccatcttatggcactacaccgacgccatct 313
||||||||| |||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct: 660 ccgacgccaacttacggcactacaccgacgccatcttacggcactacaccgacgccatct 601
Query: 314 tacggcactacaccgagcaccccaagtacaccttcccatgaagtccctgcaagtccaaag 373
||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct: 600 tacggcactacaccgagcaccccaagtacaccttcccatgatgtccctgcaagtccaaag 541
Query: 374 aagcatggattcattggatcctgcgacttctggaagaatcacccagacgctataattgca 433
|||||||| ||||||||||||||||||| |||||||||||||||||| |||||| |||||
Sbjct: 540 aagcatgggttcattggatcctgcgactactggaagaatcacccagatgctatagttgca 481
Query: 434 gctattgggtcccttggcaacatcggcaagacatttggtgctgcatgcagtatgataggt 493
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 480 gctattgggtcccttggcaacatcggcaagacatttggtgctgcatgcagtatgataggt 421
Query: 494 ggcaagaagctaggaaatatgcatgatgcactctcaaacactagaactgatggtattg 551
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 420 ggcaagaagctaggaaatatgcatgatgcactctcaaacactagaactgatggtattg 363
Score = 242 bits (122), Expect = 1e-60
Identities = 154/165 (93%), Gaps = 6/165 (3%)
Strand = Plus / Minus
Query: 165 cccactatgggggctcaccaactccctcgcatgggtcaggaggaggctacaacccgacac 224
|||||||||||||||||||||||||| ||||||||||||||||||||||||| |||||||
Sbjct: 767 cccactatgggggctcaccaactcccacgcatgggtcaggaggaggctacaatccgacac 708
Query: 225 cgacaccaacttacggtactacaccaacgccgacgccatcttacggcactacaccgacgc 284
|||||||||||||||| |||||| |||||||||||||||||||||||||||||||
Sbjct: 707 cgacaccaacttacggcactaca------ccgacgccatcttacggcactacaccgacgc 654
Query: 285 catcttatggcactacaccgacgccatcttacggcactacaccga 329
|| |||| |||||||||||||||||||||||||||||||||||||
Sbjct: 653 caacttacggcactacaccgacgccatcttacggcactacaccga 609
Score = 180 bits (91), Expect = 3e-42
Identities = 135/148 (91%), Gaps = 4/148 (2%)
Strand = Plus / Minus
Query: 1 ttcagttcagttgcttattctgttgtctactctgcacatactgagnagcaagnagggtgg 60
||||||||||||||||||||||| || ||||||| |||||| |||||| ||||||
Sbjct: 909 ttcagttcagttgcttattctgt---cttgcctgcacacactgag-agcaagatgggtgg 854
Query: 61 caaggttcttctgatgagtgctgtcttggtggggcttgtttcactgagctcctgcaggag 120
||||||||||||||| ||||| ||||||||||||||||||||||||||||| ||||||||
Sbjct: 853 caaggttcttctgatcagtgccgtcttggtggggcttgtttcactgagctcgtgcaggag 794
Query: 121 cctgggagagttgcatgagcagaagacc 148
||||||||||||||||||||||||||||
Sbjct: 793 cctgggagagttgcatgagcagaagacc 766
>ref|XM_464784.1 | Oryza sativa (japonica cultivar-group), mRNA
Length = 660
Score = 170 bits (86), Expect = 3e-39
Identities = 238/289 (82%), Gaps = 6/289 (2%)
Strand = Plus / Plus
Query: 260 ccatcttacggcactacaccgacgccatcttatggcactacaccgacgccatcttacggc 319
|||||||| ||||||||||| || |||||||| ||||||||||| || ||||||||||||
Sbjct: 205 ccatcttatggcactacaccaacaccatcttacggcactacaccaacaccatcttacggc 264
Query: 320 actacaccgagcaccccaagtacaccttcccatgaagtccctgcaagtccaaagaagcat 379
|| ||||| |||||||| || ||||| ||| ||||||| | ||| | ||||||
Sbjct: 265 acgacaccaagcacccccagcacacc------tgatgtccctgaagttccgacaaagcat 318
Query: 380 ggattcattggatcctgcgacttctggaagaatcacccagacgctataattgcagctatt 439
| ||| |||||||||||| | ||||||||| || ||||| | ||| || ||||||||
Sbjct: 319 gatttctgtggatcctgcgattactggaagaaccatccagatgttatcatctcagctatt 378
Query: 440 gggtcccttggcaacatcggcaagacatttggtgctgcatgcagtatgataggtggcaag 499
|||||||||||| |||| ||||||||| | ||| |||| |||||| |||| |||||||
Sbjct: 379 gggtcccttggcgacattggcaagacactcggtactgcttgcagtttgatcactggcaag 438
Query: 500 aagctaggaaatatgcatgatgcactctcaaacactagaactgatggta 548
||||||| |||| | ||||||||||| ||||||||| ||||||||||||
Sbjct: 439 aagctagaaaatcttcatgatgcactttcaaacactggaactgatggta 487
Score = 117 bits (59), Expect = 4e-23
Identities = 92/103 (89%)
Strand = Plus / Plus
Query: 60 gcaaggttcttctgatgagtgctgtcttggtggggcttgtttcactgagctcctgcagga 119
|||||||||||||||| |||| |||| |||||||||| |||| |||||||| |||||||
Sbjct: 8 gcaaggttcttctgatcagtggtgtcctggtggggctcctttctctgagctcatgcagga 67
Query: 120 gcctgggagagttgcatgagcagaagacctactcttcttctac 162
|||||||||||||| ||| |||||||||||||||||| ||||
Sbjct: 68 gcctgggagagttgtctgaacagaagacctactcttctactac 110
Score = 93.7 bits (47), Expect = 6e-16
Identities = 74/83 (89%)
Strand = Plus / Plus
Query: 245 acaccaacgccgacgccatcttacggcactacaccgacgccatcttatggcactacaccg 304
|||||||| || || ||| |||||||| ||||||| || ||||||||||||||||||||
Sbjct: 166 acaccaaccccaacaccagcttacggctctacaccaacaccatcttatggcactacacca 225
Query: 305 acgccatcttacggcactacacc 327
|| ||||||||||||||||||||
Sbjct: 226 acaccatcttacggcactacacc 248
Score = 40.1 bits (20), Expect = 7.5
Identities = 29/32 (90%)
Strand = Plus / Plus
Query: 221 acaccgacaccaacttacggtactacaccaac 252
||||| |||||| ||||||| |||||||||||
Sbjct: 220 acaccaacaccatcttacggcactacaccaac 251
>gb|AY568677.1 | Oryza sativa (japonica cultivar-group) proline- and threonine-rich
protein mRNA, complete cds
Length = 902
Score = 147 bits (74), Expect = 4e-32
Identities = 235/289 (81%), Gaps = 6/289 (2%)
Strand = Plus / Plus
Query: 260 ccatcttacggcactacaccgacgccatcttatggcactacaccgacgccatcttacggc 319
|||||||| ||||||||||| || |||||||| ||||||||||| || ||||||||||||
Sbjct: 269 ccatcttatggcactacaccaacaccatcttacggcactacaccaacaccatcttacggc 328
Query: 320 actacaccgagcaccccaagtacaccttcccatgaagtccctgcaagtccaaagaagcat 379
|| ||||| ||| |||| || ||||| ||| ||||||| | ||| | ||||||
Sbjct: 329 acgacaccaagctcccccagcacacc------tgatgtccctgaagttccgacaaagcat 382
Query: 380 ggattcattggatcctgcgacttctggaagaatcacccagacgctataattgcagctatt 439
| ||| |||||||||||| | ||||||||| || ||||| | ||| || ||||||||
Sbjct: 383 gatttctgtggatcctgcgattactggaagaaccatccagatgttatcatctcagctatt 442
Query: 440 gggtcccttggcaacatcggcaagacatttggtgctgcatgcagtatgataggtggcaag 499
|||||||||||| |||| |||| |||| | | | |||| |||||| |||| |||||||
Sbjct: 443 gggtcccttggcgacattggcatgacactcgatactgcttgcagtttgatcactggcaag 502
Query: 500 aagctaggaaatatgcatgatgcactctcaaacactagaactgatggta 548
||||||| |||| | ||||||||||| ||||||||| ||||||||||||
Sbjct: 503 aagctagaaaatcttcatgatgcactttcaaacactggaactgatggta 551
Score = 121 bits (61), Expect = 3e-24
Identities = 119/139 (85%)
Strand = Plus / Plus
Query: 24 tgtctactctgcacatactgagnagcaagnagggtggcaaggttcttctgatgagtgctg 83
||||| ||||||| |||||||| |||| | || |||||||||||||||| |||| ||
Sbjct: 36 tgtcttctctgcagatactgagagccaagatgagtagcaaggttcttctgatcagtggtg 95
Query: 84 tcttggtggggcttgtttcactgagctcctgcaggagcctgggagagttgcatgagcaga 143
|| |||||||||| |||| |||||||| ||||||||||||||||||||| ||| ||||
Sbjct: 96 tcctggtggggctcctttctctgagctcatgcaggagcctgggagagttgtctgaacaga 155
Query: 144 agacctactcttcttctac 162
|||||||||||||| ||||
Sbjct: 156 agacctactcttctactac 174
Score = 93.7 bits (47), Expect = 6e-16
Identities = 74/83 (89%)
Strand = Plus / Plus
Query: 245 acaccaacgccgacgccatcttacggcactacaccgacgccatcttatggcactacaccg 304
|||||||| || || ||| |||||||| ||||||| || ||||||||||||||||||||
Sbjct: 230 acaccaaccccaacaccagcttacggctctacaccaacaccatcttatggcactacacca 289
Query: 305 acgccatcttacggcactacacc 327
|| ||||||||||||||||||||
Sbjct: 290 acaccatcttacggcactacacc 312
Score = 40.1 bits (20), Expect = 7.5
Identities = 29/32 (90%)
Strand = Plus / Plus
Query: 221 acaccgacaccaacttacggtactacaccaac 252
||||| |||||| ||||||| |||||||||||
Sbjct: 284 acaccaacaccatcttacggcactacaccaac 315
>dbj|AP008208.1 | Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, complete
sequence
Length = 35954743
Score = 121 bits (61), Expect = 3e-24
Identities = 119/139 (85%)
Strand = Plus / Minus
Query: 24 tgtctactctgcacatactgagnagcaagnagggtggcaaggttcttctgatgagtgctg 83
||||| ||||||| |||||||| |||| | || |||||||||||||||| |||| ||
Sbjct: 7324237 tgtcttctctgcagatactgagagccaagatgagtagcaaggttcttctgatcagtggtg 7324178
Query: 84 tcttggtggggcttgtttcactgagctcctgcaggagcctgggagagttgcatgagcaga 143
|| |||||||||| |||| |||||||| ||||||||||||||||||||| ||| ||||
Sbjct: 7324177 tcctggtggggctcctttctctgagctcatgcaggagcctgggagagttgtctgaacaga 7324118
Query: 144 agacctactcttcttctac 162
|||||||||||||| ||||
Sbjct: 7324117 agacctactcttctactac 7324099
Score = 115 bits (58), Expect = 2e-22
Identities = 124/146 (84%)
Strand = Plus / Minus
Query: 403 ctggaagaatcacccagacgctataattgcagctattgggtcccttggcaacatcggcaa 462
||||||||| || ||||| | ||| || |||||||||||||||||||| |||| |||||
Sbjct: 7323474 ctggaagaaccatccagatgttatcatctcagctattgggtcccttggcgacattggcaa 7323415
Query: 463 gacatttggtgctgcatgcagtatgataggtggcaagaagctaggaaatatgcatgatgc 522
|||| | ||| |||| |||||| |||| |||||||||||||| |||| | ||||||||
Sbjct: 7323414 gacactcggtactgcttgcagtttgatcactggcaagaagctagaaaatcttcatgatgc 7323355
Query: 523 actctcaaacactagaactgatggta 548
||| ||||||||| ||||||||||||
Sbjct: 7323354 actttcaaacactggaactgatggta 7323329
Score = 93.7 bits (47), Expect = 6e-16
Identities = 74/83 (89%)
Strand = Plus / Minus
Query: 245 acaccaacgccgacgccatcttacggcactacaccgacgccatcttatggcactacaccg 304
|||||||| || || ||| |||||||| ||||||| || ||||||||||||||||||||
Sbjct: 7323735 acaccaaccccaacaccagcttacggctctacaccaacaccatcttatggcactacacca 7323676
Query: 305 acgccatcttacggcactacacc 327
|| ||||||||||||||||||||
Sbjct: 7323675 acaccatcttacggcactacacc 7323653
Score = 93.7 bits (47), Expect = 6e-16
Identities = 77/87 (88%)
Strand = Plus / Minus
Query: 260 ccatcttacggcactacaccgacgccatcttatggcactacaccgacgccatcttacggc 319
|||||||| ||||||||||| || |||||||| ||||||||||| || ||||||||||||
Sbjct: 7323696 ccatcttatggcactacaccaacaccatcttacggcactacaccaacaccatcttacggc 7323637
Query: 320 actacaccgagcaccccaagtacacct 346
|| ||||| |||||||| || ||||||
Sbjct: 7323636 acgacaccaagcacccccagcacacct 7323610
Score = 40.1 bits (20), Expect = 7.5
Identities = 29/32 (90%)
Strand = Plus / Minus
Query: 221 acaccgacaccaacttacggtactacaccaac 252
||||| |||||| ||||||| |||||||||||
Sbjct: 7323681 acaccaacaccatcttacggcactacaccaac 7323650
>dbj|AP005756.3 | Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, BAC
clone:OSJNBb0035N08
Length = 136267
Score = 121 bits (61), Expect = 3e-24
Identities = 119/139 (85%)
Strand = Plus / Minus
Query: 24 tgtctactctgcacatactgagnagcaagnagggtggcaaggttcttctgatgagtgctg 83
||||| ||||||| |||||||| |||| | || |||||||||||||||| |||| ||
Sbjct: 100045 tgtcttctctgcagatactgagagccaagatgagtagcaaggttcttctgatcagtggtg 99986
Query: 84 tcttggtggggcttgtttcactgagctcctgcaggagcctgggagagttgcatgagcaga 143
|| |||||||||| |||| |||||||| ||||||||||||||||||||| ||| ||||
Sbjct: 99985 tcctggtggggctcctttctctgagctcatgcaggagcctgggagagttgtctgaacaga 99926
Query: 144 agacctactcttcttctac 162
|||||||||||||| ||||
Sbjct: 99925 agacctactcttctactac 99907
Score = 115 bits (58), Expect = 2e-22
Identities = 124/146 (84%)
Strand = Plus / Minus
Query: 403 ctggaagaatcacccagacgctataattgcagctattgggtcccttggcaacatcggcaa 462
||||||||| || ||||| | ||| || |||||||||||||||||||| |||| |||||
Sbjct: 99282 ctggaagaaccatccagatgttatcatctcagctattgggtcccttggcgacattggcaa 99223
Query: 463 gacatttggtgctgcatgcagtatgataggtggcaagaagctaggaaatatgcatgatgc 522
|||| | ||| |||| |||||| |||| |||||||||||||| |||| | ||||||||
Sbjct: 99222 gacactcggtactgcttgcagtttgatcactggcaagaagctagaaaatcttcatgatgc 99163
Query: 523 actctcaaacactagaactgatggta 548
||| ||||||||| ||||||||||||
Sbjct: 99162 actttcaaacactggaactgatggta 99137
Score = 93.7 bits (47), Expect = 6e-16
Identities = 74/83 (89%)
Strand = Plus / Minus
Query: 245 acaccaacgccgacgccatcttacggcactacaccgacgccatcttatggcactacaccg 304
|||||||| || || ||| |||||||| ||||||| || ||||||||||||||||||||
Sbjct: 99543 acaccaaccccaacaccagcttacggctctacaccaacaccatcttatggcactacacca 99484
Query: 305 acgccatcttacggcactacacc 327
|| ||||||||||||||||||||
Sbjct: 99483 acaccatcttacggcactacacc 99461
Score = 93.7 bits (47), Expect = 6e-16
Identities = 77/87 (88%)
Strand = Plus / Minus
Query: 260 ccatcttacggcactacaccgacgccatcttatggcactacaccgacgccatcttacggc 319
|||||||| ||||||||||| || |||||||| ||||||||||| || ||||||||||||
Sbjct: 99504 ccatcttatggcactacaccaacaccatcttacggcactacaccaacaccatcttacggc 99445
Query: 320 actacaccgagcaccccaagtacacct 346
|| ||||| |||||||| || ||||||
Sbjct: 99444 acgacaccaagcacccccagcacacct 99418
Score = 40.1 bits (20), Expect = 7.5
Identities = 29/32 (90%)
Strand = Plus / Minus
Query: 221 acaccgacaccaacttacggtactacaccaac 252
||||| |||||| ||||||| |||||||||||
Sbjct: 99489 acaccaacaccatcttacggcactacaccaac 99458
>emb|AJ342722.1 |HSA342722 Homo sapiens genomic sequence surrounding NotI site, clone NR1-JG2R
Length = 788
Score = 40.1 bits (20), Expect = 7.5
Identities = 20/20 (100%)
Strand = Plus / Minus
Query: 109 ctcctgcaggagcctgggag 128
||||||||||||||||||||
Sbjct: 467 ctcctgcaggagcctgggag 448
Database: nt
Posted date: May 29, 2006 11:10 AM
Number of letters in database: 3,984,495,279
Number of sequences in database: 917,343
Database: /shigen/export/home/twatanab/db/nt/nt.01
Posted date: May 29, 2006 11:16 AM
Number of letters in database: 3,988,174,986
Number of sequences in database: 835,257
Database: /shigen/export/home/twatanab/db/nt/nt.02
Posted date: May 29, 2006 11:21 AM
Number of letters in database: 3,991,246,324
Number of sequences in database: 771,481
Database: /shigen/export/home/twatanab/db/nt/nt.03
Posted date: May 29, 2006 11:27 AM
Number of letters in database: 3,990,718,311
Number of sequences in database: 977,174
Database: /shigen/export/home/twatanab/db/nt/nt.04
Posted date: May 29, 2006 11:29 AM
Number of letters in database: 1,278,410,368
Number of sequences in database: 400,813
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 3,909,296
Number of Sequences: 3902068
Number of extensions: 3909296
Number of successful extensions: 69551
Number of sequences better than 10.0: 27
Number of HSP's better than 10.0 without gapping: 27
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 69442
Number of HSP's gapped (non-prelim): 93
length of query: 551
length of database: 17,233,045,268
effective HSP length: 23
effective length of query: 528
effective length of database: 17,143,297,704
effective search space: 9051661187712
effective search space used: 9051661187712
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)