ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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| Clone Name | bags8i14 |
|---|---|
| Clone Library Name | barley_pub |
>YTHD1_MOUSE (P59326) YTH domain protein 1 (Dermatomyositis associated with| cancer putative autoantigen 1 homolog) (DACA-1 homolog) Length = 559 Score = 155 bits (393), Expect(2) = 3e-41 Identities = 73/120 (60%), Positives = 88/120 (73%) Frame = +1 Query: 178 SIKYGVWASTTNGNRKLDAAYREVKEKEEHYPIFLLFSVNASAQFCGVAEMTGPVNFDKS 357 SIKY +W ST +GN++LD A+R + K P++LLFSVN S FCGVAEM PV++ S Sbjct: 405 SIKYSIWCSTEHGNKRLDGAFRSMSSKG---PVYLLFSVNGSGHFCGVAEMKSPVDYGTS 461 Query: 358 VEYWQQDKWTGQFPVKWHIVKDVPNNLFRHIILENNENKPVTNSRDTQEVKLEQGLEMLK 537 W QDKW G+F VKW VKDVPNN RHI LENN+NKPVTNSRDTQEV LE+ ++LK Sbjct: 462 AGVWSQDKWKGKFDVKWIFVKDVPNNQLRHIRLENNDNKPVTNSRDTQEVPLEKAKQVLK 521 Score = 32.3 bits (72), Expect(2) = 3e-41 Identities = 13/21 (61%), Positives = 17/21 (80%), Gaps = 2/21 (9%) Frame = +3 Query: 138 FIIKSYSEDNVHKX--HQIWC 194 FIIKSYSED++H+ + IWC Sbjct: 392 FIIKSYSEDDIHRSIKYSIWC 412
>YTHD3_PONPY (Q5RFL8) YTH domain protein 3| Length = 585 Score = 152 bits (385), Expect(2) = 2e-40 Identities = 73/120 (60%), Positives = 88/120 (73%) Frame = +1 Query: 178 SIKYGVWASTTNGNRKLDAAYREVKEKEEHYPIFLLFSVNASAQFCGVAEMTGPVNFDKS 357 SIKY +W ST +GN++LDAAYR + K P++LLFSVN S FCGVAEM V+++ Sbjct: 432 SIKYSIWCSTEHGNKRLDAAYRSLNGKG---PLYLLFSVNGSGHFCGVAEMKSVVDYNAY 488 Query: 358 VEYWQQDKWTGQFPVKWHIVKDVPNNLFRHIILENNENKPVTNSRDTQEVKLEQGLEMLK 537 W QDKW G+F VKW VKDVPNN RHI LENN+NKPVTNSRDTQEV LE+ ++LK Sbjct: 489 AGVWSQDKWKGKFEVKWIFVKDVPNNQLRHIRLENNDNKPVTNSRDTQEVPLEKAKQVLK 548 Score = 32.3 bits (72), Expect(2) = 2e-40 Identities = 13/21 (61%), Positives = 17/21 (80%), Gaps = 2/21 (9%) Frame = +3 Query: 138 FIIKSYSEDNVHKX--HQIWC 194 FIIKSYSED++H+ + IWC Sbjct: 419 FIIKSYSEDDIHRSIKYSIWC 439
>YTHD3_MOUSE (Q8BYK6) YTH domain protein 3| Length = 585 Score = 152 bits (385), Expect(2) = 2e-40 Identities = 73/120 (60%), Positives = 88/120 (73%) Frame = +1 Query: 178 SIKYGVWASTTNGNRKLDAAYREVKEKEEHYPIFLLFSVNASAQFCGVAEMTGPVNFDKS 357 SIKY +W ST +GN++LDAAYR + K P++LLFSVN S FCGVAEM V+++ Sbjct: 432 SIKYSIWCSTEHGNKRLDAAYRSLNGKG---PLYLLFSVNGSGHFCGVAEMKSVVDYNAY 488 Query: 358 VEYWQQDKWTGQFPVKWHIVKDVPNNLFRHIILENNENKPVTNSRDTQEVKLEQGLEMLK 537 W QDKW G+F VKW VKDVPNN RHI LENN+NKPVTNSRDTQEV LE+ ++LK Sbjct: 489 AGVWSQDKWKGKFEVKWIFVKDVPNNQLRHIRLENNDNKPVTNSRDTQEVPLEKAKQVLK 548 Score = 32.3 bits (72), Expect(2) = 2e-40 Identities = 13/21 (61%), Positives = 17/21 (80%), Gaps = 2/21 (9%) Frame = +3 Query: 138 FIIKSYSEDNVHKX--HQIWC 194 FIIKSYSED++H+ + IWC Sbjct: 419 FIIKSYSEDDIHRSIKYSIWC 439
>YTHD3_HUMAN (Q7Z739) YTH domain protein 3| Length = 585 Score = 152 bits (385), Expect(2) = 2e-40 Identities = 73/120 (60%), Positives = 88/120 (73%) Frame = +1 Query: 178 SIKYGVWASTTNGNRKLDAAYREVKEKEEHYPIFLLFSVNASAQFCGVAEMTGPVNFDKS 357 SIKY +W ST +GN++LDAAYR + K P++LLFSVN S FCGVAEM V+++ Sbjct: 432 SIKYSIWCSTEHGNKRLDAAYRSLNGKG---PLYLLFSVNGSGHFCGVAEMKSVVDYNAY 488 Query: 358 VEYWQQDKWTGQFPVKWHIVKDVPNNLFRHIILENNENKPVTNSRDTQEVKLEQGLEMLK 537 W QDKW G+F VKW VKDVPNN RHI LENN+NKPVTNSRDTQEV LE+ ++LK Sbjct: 489 AGVWSQDKWKGKFEVKWIFVKDVPNNQLRHIRLENNDNKPVTNSRDTQEVPLEKAKQVLK 548 Score = 32.3 bits (72), Expect(2) = 2e-40 Identities = 13/21 (61%), Positives = 17/21 (80%), Gaps = 2/21 (9%) Frame = +3 Query: 138 FIIKSYSEDNVHKX--HQIWC 194 FIIKSYSED++H+ + IWC Sbjct: 419 FIIKSYSEDDIHRSIKYSIWC 439
>YTHD2_HUMAN (Q9Y5A9) YTH domain protein 2 (High-glucose-regulated protein 8)| (NY-REN-2 antigen) (CLL-associated antigen KW-14) Length = 579 Score = 152 bits (383), Expect(2) = 4e-40 Identities = 72/120 (60%), Positives = 88/120 (73%) Frame = +1 Query: 178 SIKYGVWASTTNGNRKLDAAYREVKEKEEHYPIFLLFSVNASAQFCGVAEMTGPVNFDKS 357 SIKY +W ST +GN++LDAAYR + K P++LLFSVN S FCGVAEM V+++ Sbjct: 426 SIKYNIWCSTEHGNKRLDAAYRSMNGKG---PVYLLFSVNGSGHFCGVAEMKSAVDYNTC 482 Query: 358 VEYWQQDKWTGQFPVKWHIVKDVPNNLFRHIILENNENKPVTNSRDTQEVKLEQGLEMLK 537 W QDKW G+F V+W VKDVPN+ RHI LENNENKPVTNSRDTQEV LE+ ++LK Sbjct: 483 AGVWSQDKWKGRFDVRWIFVKDVPNSQLRHIRLENNENKPVTNSRDTQEVPLEKAKQVLK 542 Score = 32.3 bits (72), Expect(2) = 4e-40 Identities = 13/21 (61%), Positives = 17/21 (80%), Gaps = 2/21 (9%) Frame = +3 Query: 138 FIIKSYSEDNVHKX--HQIWC 194 FIIKSYSED++H+ + IWC Sbjct: 413 FIIKSYSEDDIHRSIKYNIWC 433
>YTHD1_HUMAN (Q9BYJ9) YTH domain protein 1 (Dermatomyositis associated with| cancer putative autoantigen 1) (DACA-1) Length = 559 Score = 153 bits (386), Expect = 3e-37 Identities = 72/120 (60%), Positives = 89/120 (74%) Frame = +1 Query: 178 SIKYGVWASTTNGNRKLDAAYREVKEKEEHYPIFLLFSVNASAQFCGVAEMTGPVNFDKS 357 SIKY +W ST +GN++LD+A+R + K P++LLFSVN S FCGVAEM PV++ S Sbjct: 405 SIKYSIWCSTEHGNKRLDSAFRCMSSKG---PVYLLFSVNGSGHFCGVAEMKSPVDYGTS 461 Query: 358 VEYWQQDKWTGQFPVKWHIVKDVPNNLFRHIILENNENKPVTNSRDTQEVKLEQGLEMLK 537 W QDKW G+F V+W VKDVPNN RHI LENN+NKPVTNSRDTQEV LE+ ++LK Sbjct: 462 AGVWSQDKWKGKFDVQWIFVKDVPNNQLRHIRLENNDNKPVTNSRDTQEVPLEKAKQVLK 521 Score = 32.7 bits (73), Expect = 0.66 Identities = 16/36 (44%), Positives = 23/36 (63%), Gaps = 4/36 (11%) Frame = +3 Query: 138 FIIKSYSEDNVHKX--HQIWCLG*HNKWKQET--RC 233 FIIKSYSED++H+ + IWC H + ++ RC Sbjct: 392 FIIKSYSEDDIHRSIKYSIWCSTEHGNKRLDSAFRC 427
>YTDC1_HUMAN (Q96MU7) YTH domain-containing protein 1 (Putative splicing factor| YT521) Length = 727 Score = 55.5 bits (132), Expect = 9e-08 Identities = 34/120 (28%), Positives = 57/120 (47%), Gaps = 6/120 (5%) Frame = +1 Query: 190 GVWASTTNGNRKLDAAYREVKEKEEHYPIFLLFSVNASAQFCGVAEMTGPVNFDKSVEYW 369 GVW++ +KL+ A+R + + L+FSV S +F G A ++ + S +W Sbjct: 375 GVWSTLPVNEKKLNLAFRSARS------VILIFSVRESGKFQGFARLSSESHHGGSPIHW 428 Query: 370 ------QQDKWTGQFPVKWHIVKDVPNNLFRHIILENNENKPVTNSRDTQEVKLEQGLEM 531 G F + W +++P H+ NE+KPV RD QE++LE G ++ Sbjct: 429 VLPAGMSAKMLGGVFKIDWICRRELPFTKSAHLTNPWNEHKPVKIGRDGQEIELECGTQL 488
>YTDC1_RAT (Q9QY02) YTH domain-containing protein 1 (Putative splicing factor| YT521) (RA301-binding protein) Length = 738 Score = 55.5 bits (132), Expect = 9e-08 Identities = 34/120 (28%), Positives = 57/120 (47%), Gaps = 6/120 (5%) Frame = +1 Query: 190 GVWASTTNGNRKLDAAYREVKEKEEHYPIFLLFSVNASAQFCGVAEMTGPVNFDKSVEYW 369 GVW++ +KL+ A+R + + L+FSV S +F G A ++ + S +W Sbjct: 378 GVWSTLPVNEKKLNLAFRSARS------VILIFSVRESGKFQGFARLSSESHHGGSPIHW 431 Query: 370 ------QQDKWTGQFPVKWHIVKDVPNNLFRHIILENNENKPVTNSRDTQEVKLEQGLEM 531 G F + W +++P H+ NE+KPV RD QE++LE G ++ Sbjct: 432 VLPAGMSAKMLGGVFKIDWICRRELPFTKSAHLTNPWNEHKPVKIGRDGQEIELECGTQL 491
>TPIS_PROMM (Q7V7D2) Triosephosphate isomerase (EC 5.3.1.1) (TIM)| (Triose-phosphate isomerase) Length = 243 Score = 30.0 bits (66), Expect = 4.3 Identities = 12/32 (37%), Positives = 19/32 (59%) Frame = -3 Query: 404 LTGNWPVHLSCCQYSTLLSKFTGPVISATPQN 309 + GNW +H++C Q + F P+I ATP + Sbjct: 6 IAGNWKMHMTCAQAREYTAMFL-PLIEATPND 36
>OLIG2_HUMAN (Q13516) Oligodendrocyte transcription factor 2 (Oligo2) (Basic| helix-loop-helix protein class B 1) (Protein kinase C-binding protein RACK17) (Protein kinase C-binding protein 2) Length = 323 Score = 30.0 bits (66), Expect = 4.3 Identities = 20/60 (33%), Positives = 24/60 (40%) Frame = -1 Query: 481 LQACSHCSQELYGGRDYLEHPSLCAT*QGTGQSTYLAASTPHFCRNSLARSSLQHHRTVH 302 L+ E+YGG HPS C G S L A+T H A + HH VH Sbjct: 166 LEEMKRLVSEIYGGHHAGFHPSACG---GLAHSAPLPAATAH----PAAAAHAAHHPAVH 218
>GLGB_SYNY3 (P52981) 1,4-alpha-glucan branching enzyme (EC 2.4.1.18) (Glycogen| branching enzyme) (BE) (1,4-alpha-D-glucan:1,4-alpha-D-glucan 6-glucosyl-transferase) Length = 770 Score = 29.6 bits (65), Expect = 5.6 Identities = 18/73 (24%), Positives = 30/73 (41%), Gaps = 3/73 (4%) Frame = +1 Query: 295 NASAQFCGVAEMTGPVNFDKSVEYWQQDKWTGQFPVKWHIVKDVPNNLFRHIILENN--- 465 N A F + G S+E+ Q +W ++WH++ P+ + E N Sbjct: 577 NVRALFTYMFTHPGKKTMFMSMEFGQWSEWNVWGDLEWHLLNFPPHQQLKQFFTELNHLY 636 Query: 466 ENKPVTNSRDTQE 504 +N+P S D E Sbjct: 637 KNEPALYSNDFDE 649
>PIWI_DROME (Q9VKM1) Protein piwi| Length = 843 Score = 29.3 bits (64), Expect = 7.3 Identities = 14/41 (34%), Positives = 21/41 (51%), Gaps = 3/41 (7%) Frame = -3 Query: 422 SFTMCHLTGNWPVHL---SCCQYSTLLSKFTGPVISATPQN 309 ++ MCHL NW + CQY+ L+ G + + PQN Sbjct: 794 TYKMCHLYYNWSGTTRVPAVCQYAKKLATLVGTNLHSIPQN 834
>PYC_BACSU (Q9KWU4) Pyruvate carboxylase (EC 6.4.1.1) (Pyruvic carboxylase)| (PYC) Length = 1148 Score = 28.9 bits (63), Expect = 9.5 Identities = 14/47 (29%), Positives = 25/47 (53%) Frame = +1 Query: 325 EMTGPVNFDKSVEYWQQDKWTGQFPVKWHIVKDVPNNLFRHIILENN 465 EM G FD + + ++D W ++ K+VPN LF+ ++ +N Sbjct: 576 EMWGGATFDVAYRFLKEDPWKRLEDLR----KEVPNTLFQMLLRSSN 618
>SPAN_SALTY (P40613) Surface presentation of antigens protein spaN (Invasion| protein invJ) Length = 336 Score = 28.9 bits (63), Expect = 9.5 Identities = 14/50 (28%), Positives = 24/50 (48%) Frame = +1 Query: 286 FSVNASAQFCGVAEMTGPVNFDKSVEYWQQDKWTGQFPVKWHIVKDVPNN 435 +SVN A+ G + + + VE+ D+W P +WH+ +D N Sbjct: 274 YSVNIQARQAGEFSL---IPSNTQVEHRLHDQWQNGNPQRWHLTRDDQQN 320 Database: uniprot_sprot.fasta Posted date: May 25, 2006 5:36 PM Number of letters in database: 80,573,946 Number of sequences in database: 219,361 Lambda K H 0.318 0.135 0.401 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 72,650,965 Number of Sequences: 219361 Number of extensions: 1438576 Number of successful extensions: 3612 Number of sequences better than 10.0: 14 Number of HSP's better than 10.0 without gapping: 3501 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 3601 length of database: 80,573,946 effective HSP length: 105 effective length of database: 57,541,041 effective search space used: 4200495993 frameshift window, decay const: 50, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits)
