| Clone Name | bags8i03 |
|---|---|
| Clone Library Name | barley_pub |
>dbj|AK069696.1| Oryza sativa (japonica cultivar-group) cDNA clone:J023028P13, full insert sequence Length = 1234 Score = 323 bits (163), Expect = 3e-85 Identities = 411/492 (83%), Gaps = 4/492 (0%) Strand = Plus / Plus Query: 1 atagcaactacaagctcgcactggnatgggttcctctccaaggtaccaattcctactggt 60 ||||||||||||||||||| || | ||||||| ||||||||||| |||||||||||||| Sbjct: 451 atagcaactacaagctcgc-cttggatgggtttctctccaaggtcccaattcctactggc 509 Query: 61 caagtgtatgctatcaatgatgccttatctgctgaaggagcagcagaggactatgaaacc 120 ||||| |||||||| ||||||||||| || ||||| |||||||| || ||||||||||| Sbjct: 510 caagtttatgctataaatgatgccttgtcagctgagggagcagcggatgactatgaaact 569 Query: 121 atcttgaagcaacttgttaagaatggtgtccttgcaatgtcaaaaacaactgggtttccc 180 ||||||||||||||| ||||||||||| |||||||||| || | ||||||||||| Sbjct: 570 tgcttgaagcaacttgtcaagaatggtgtgattgcaatgtcgcaatcgactgggtttcct 629 Query: 181 aggttcgatctgcagcttcttggcatgggccctgacggtcacatcgcctctctcttccca 240 ||||| ||| | ||| || || ||||||||||| || || || || ||||| |||||| Sbjct: 630 aggtttgatgtcatgctcctgggaatgggccctgatggccatattgcatctcttttccca 689 Query: 241 ggccatccacttgttaaagagaacaagaagtgggtcacccacatcttggactctccaaag 300 ||||| || |||||||| || |||||||||||||||||| ||||| ||| ||||||||| Sbjct: 690 ggccaccctcttgttaatgaaaacaagaagtgggtcacctacatcaaggattctccaaag 749 Query: 301 ccgccaccacagagaatcacattcacgttcccggtgatcaactcctctgcatatgtcgcc 360 || ||||| ||||||| || || || || || ||||||||||| ||||| |||||||| Sbjct: 750 ccaccacctgagagaattacgtttacatttcctgtgatcaactcatctgcgtatgtcgca 809 Query: 361 atggtggtaactggggctgggaaagctggtgctgtgcagaaggcgatttcggacaagaaa 420 |||||||| ||||| ||||||||||||||||| |||||||| || |||| || ||| | Sbjct: 810 atggtggtcactggagctgggaaagctggtgcagtgcagaaagcactttcagataagcag 869 Query: 421 act---tctgatttgctccccgttgagatggctgtgcttgacgatggagaattcacctgg 477 ||| ||||||||||| || || || |||||||| ||| | ||||| |||||||| ||| Sbjct: 870 acttcgtctgatttgctgcctgtagaaatggctgtacttcaagatggggaattcacttgg 929 Query: 478 ttcaccgacaag 489 ||||| |||||| Sbjct: 930 ttcactgacaag 941
>dbj|AP008215.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 9, complete sequence Length = 22696651 Score = 281 bits (142), Expect = 1e-72 Identities = 375/452 (82%), Gaps = 3/452 (0%) Strand = Plus / Minus Query: 41 aggtaccaattcctactggtcaagtgtatgctatcaatgatgccttatctgctgaaggag 100 |||| |||||||||||||| ||||| |||||||| ||||||||||| || ||||| |||| Sbjct: 20424310 aggtcccaattcctactggccaagtttatgctataaatgatgccttgtcagctgagggag 20424251 Query: 101 cagcagaggactatgaaaccatcttgaagcaacttgttaagaatggtgtccttgcaatgt 160 |||| || ||||||||||| ||||||||||||||| ||||||||||| ||||||||| Sbjct: 20424250 cagcggatgactatgaaacttgcttgaagcaacttgtcaagaatggtgtgattgcaatgt 20424191 Query: 161 caaaaacaactgggtttcccaggttcgatctgcagcttcttggcatgggccctgacggtc 220 | || | ||||||||||| ||||| ||| | ||| || || ||||||||||| || | Sbjct: 20424190 cgcaatcgactgggtttcctaggtttgatgtcatgctcctgggaatgggccctgatggcc 20424131 Query: 221 acatcgcctctctcttcccaggccatccacttgttaaagagaacaagaagtgggtcaccc 280 | || || ||||| ||||||||||| || |||||||| || |||||||||||||||||| Sbjct: 20424130 atattgcatctcttttcccaggccaccctcttgttaatgaaaacaagaagtgggtcacct 20424071 Query: 281 acatcttggactctccaaagccgccaccacagagaatcacattcacgttcccggtgatca 340 ||||| ||| ||||||||||| ||||| ||||||| || || || || || ||||||| Sbjct: 20424070 acatcaaggattctccaaagccaccacctgagagaattacgtttacatttcctgtgatca 20424011 Query: 341 actcctctgcatatgtcgccatggtggtaactggggctgggaaagctggtgctgtgcaga 400 |||| ||||| |||||||| |||||||| ||||| ||||||||||||||||| ||||||| Sbjct: 20424010 actcatctgcgtatgtcgcaatggtggtcactggagctgggaaagctggtgcagtgcaga 20423951 Query: 401 aggcgatttcggacaagaaaact---tctgatttgctccccgttgagatggctgtgcttg 457 | || |||| || ||| | ||| ||||||||||| || || || |||||||| ||| Sbjct: 20423950 aagcactttcagataagcagacttcgtctgatttgctgcctgtagaaatggctgtacttc 20423891 Query: 458 acgatggagaattcacctggttcaccgacaag 489 | ||||| |||||||| |||||||| |||||| Sbjct: 20423890 aagatggggaattcacttggttcactgacaag 20423859 Score = 52.0 bits (26), Expect = 0.002 Identities = 41/45 (91%), Gaps = 1/45 (2%) Strand = Plus / Minus Query: 1 atagcaactacaagctcgcactggnatgggttcctctccaaggta 45 ||||||||||||||||||| || | ||||||| |||||||||||| Sbjct: 20426009 atagcaactacaagctcgc-cttggatgggtttctctccaaggta 20425966
>dbj|AP005682.2| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 9, BAC clone:OJ1531_B07 Length = 115245 Score = 281 bits (142), Expect = 1e-72 Identities = 375/452 (82%), Gaps = 3/452 (0%) Strand = Plus / Minus Query: 41 aggtaccaattcctactggtcaagtgtatgctatcaatgatgccttatctgctgaaggag 100 |||| |||||||||||||| ||||| |||||||| ||||||||||| || ||||| |||| Sbjct: 52449 aggtcccaattcctactggccaagtttatgctataaatgatgccttgtcagctgagggag 52390 Query: 101 cagcagaggactatgaaaccatcttgaagcaacttgttaagaatggtgtccttgcaatgt 160 |||| || ||||||||||| ||||||||||||||| ||||||||||| ||||||||| Sbjct: 52389 cagcggatgactatgaaacttgcttgaagcaacttgtcaagaatggtgtgattgcaatgt 52330 Query: 161 caaaaacaactgggtttcccaggttcgatctgcagcttcttggcatgggccctgacggtc 220 | || | ||||||||||| ||||| ||| | ||| || || ||||||||||| || | Sbjct: 52329 cgcaatcgactgggtttcctaggtttgatgtcatgctcctgggaatgggccctgatggcc 52270 Query: 221 acatcgcctctctcttcccaggccatccacttgttaaagagaacaagaagtgggtcaccc 280 | || || ||||| ||||||||||| || |||||||| || |||||||||||||||||| Sbjct: 52269 atattgcatctcttttcccaggccaccctcttgttaatgaaaacaagaagtgggtcacct 52210 Query: 281 acatcttggactctccaaagccgccaccacagagaatcacattcacgttcccggtgatca 340 ||||| ||| ||||||||||| ||||| ||||||| || || || || || ||||||| Sbjct: 52209 acatcaaggattctccaaagccaccacctgagagaattacgtttacatttcctgtgatca 52150 Query: 341 actcctctgcatatgtcgccatggtggtaactggggctgggaaagctggtgctgtgcaga 400 |||| ||||| |||||||| |||||||| ||||| ||||||||||||||||| ||||||| Sbjct: 52149 actcatctgcgtatgtcgcaatggtggtcactggagctgggaaagctggtgcagtgcaga 52090 Query: 401 aggcgatttcggacaagaaaact---tctgatttgctccccgttgagatggctgtgcttg 457 | || |||| || ||| | ||| ||||||||||| || || || |||||||| ||| Sbjct: 52089 aagcactttcagataagcagacttcgtctgatttgctgcctgtagaaatggctgtacttc 52030 Query: 458 acgatggagaattcacctggttcaccgacaag 489 | ||||| |||||||| |||||||| |||||| Sbjct: 52029 aagatggggaattcacttggttcactgacaag 51998 Score = 52.0 bits (26), Expect = 0.002 Identities = 41/45 (91%), Gaps = 1/45 (2%) Strand = Plus / Minus Query: 1 atagcaactacaagctcgcactggnatgggttcctctccaaggta 45 ||||||||||||||||||| || | ||||||| |||||||||||| Sbjct: 54148 atagcaactacaagctcgc-cttggatgggtttctctccaaggta 54105
>gb|AY105837.1| Zea mays PCO124224 mRNA sequence Length = 1316 Score = 220 bits (111), Expect = 4e-54 Identities = 416/516 (80%), Gaps = 4/516 (0%) Strand = Plus / Plus Query: 1 atagcaactacaagctcgcactggnatgggttcctctccaaggtaccaattcctactggt 60 ||||||||||||||||||| || ||||||| ||||||||||| || |||||| |||| Sbjct: 550 atagcaactacaagctcgc-ctatgatgggtttctctccaaggtgccgattcctcctgga 608 Query: 61 caagtgtatgctatcaatgatgccttatctgctgaaggagcagcagaggactatgaaacc 120 ||||| |||||||| || ||||| || || ||||||||||| ||||| ||||| ||| | Sbjct: 609 caagtttatgctataaacgatgcgttgtcagctgaaggagcggcagacgactacgaagcg 668 Query: 121 atcttgaagcaacttgttaagaatggtgtccttgcaatgtcaaaaacaactgggtttccc 180 | ||||||| ||||| ||||| ||||| || | |||||| | ||||| |||||| Sbjct: 669 tgcctgaagcagcttgtcaagaacggtgtgatttctatgtcagcggcgactggatttccc 728 Query: 181 aggttcgatctgcagcttcttggcatgggccctgacggtcacatcgcctctctcttccca 240 ||||| ||||| |||||||| || ||||| ||||| || ||||| || ||||||||||| Sbjct: 729 aggtttgatctccagcttctgggaatgggacctgatggccacattgcgtctctcttccct 788 Query: 241 ggccatccacttgttaaagagaacaagaagtgggtcacccacatcttggactctccaaag 300 ||||| || |||||||| ||||| ||| ||||||||| |||| ||| ||||||||| Sbjct: 789 ggccaccctcttgttaacgagaaagagaggtgggtcacatacattaaggattctccaaag 848 Query: 301 ccgccaccacagagaatcacattcacgttcccggtgatcaactcctctgcatatgtcgcc 360 || || ||| ||||||| ||||||||||| || || |||||||| || ||||| || || Sbjct: 849 ccacctccagagagaattacattcacgtttccagtaatcaactcatccgcatacgttgcg 908 Query: 361 atggtggtaactggggctgggaaagctggtgctgtgcagaaggcgatttcggacaagaaa 420 |||||||| ||||| ||||| || || | || |||||||||||| | || |||||| || Sbjct: 909 atggtggtgactggagctggaaaggcggcagcggtgcagaaggcgctctcagacaagcaa 968 Query: 421 a---cttctgatttgctccccgttgagatggctgtgcttgacgatggagaattcacctgg 477 | | || || |||| || ||||||||||||||||| | |||||||||||||||||| Sbjct: 969 acctcgtcagacctgctgcctgttgagatggctgtgctacaagatggagaattcacctgg 1028 Query: 478 ttcaccgacaaggaggcggtgtcgatgctgcagaac 513 ||||| || |||| |||||||| ||||||||||| Sbjct: 1029 ttcactgataaggcagcggtgtccttgctgcagaac 1064
>gb|BT018177.1| Zea mays clone EL01N0557F01.c mRNA sequence Length = 1291 Score = 204 bits (103), Expect = 2e-49 Identities = 414/516 (80%), Gaps = 4/516 (0%) Strand = Plus / Plus Query: 1 atagcaactacaagctcgcactggnatgggttcctctccaaggtaccaattcctactggt 60 ||||||||||||||||||| || ||||||| ||||||||||| || |||||| |||| Sbjct: 481 atagcaactacaagctcgc-ctatgatgggtttctctccaaggtgccgattcctcctgga 539 Query: 61 caagtgtatgctatcaatgatgccttatctgctgaaggagcagcagaggactatgaaacc 120 ||||| ||||| || |||||||| || || ||||||||||| ||||| ||||| ||| | Sbjct: 540 caagtttatgccataaatgatgcgttgtcagctgaaggagcggcagacgactacgaagcg 599 Query: 121 atcttgaagcaacttgttaagaatggtgtccttgcaatgtcaaaaacaactgggtttccc 180 | ||||||| ||||| ||||| ||||| || | |||||| | ||||| ||||| Sbjct: 600 tgcctgaagcagcttgtcaagaacggtgtgatttctatgtcagcggcgactggatttcct 659 Query: 181 aggttcgatctgcagcttcttggcatgggccctgacggtcacatcgcctctctcttccca 240 ||||| ||||| |||||||| || ||||| ||||| || ||||| || ||||||||||| Sbjct: 660 aggtttgatctccagcttctgggaatgggacctgatggccacattgcgtctctcttccct 719 Query: 241 ggccatccacttgttaaagagaacaagaagtgggtcacccacatcttggactctccaaag 300 | ||| || |||||||| ||||| ||| ||||||||| |||| ||| ||||||||| Sbjct: 720 gaccaccctcttgttaacgagaaagagaggtgggtcacatacattaaggattctccaaag 779 Query: 301 ccgccaccacagagaatcacattcacgttcccggtgatcaactcctctgcatatgtcgcc 360 || || ||| ||||||| ||||||||||| || || |||||||| || ||||| || || Sbjct: 780 ccacctccagagagaattacattcacgtttccagtaatcaactcatccgcatacgttgcg 839 Query: 361 atggtggtaactggggctgggaaagctggtgctgtgcagaaggcgatttcggacaagaaa 420 |||||||| ||||| ||||| || || | || |||||||||||| | || |||||| || Sbjct: 840 atggtggtgactggagctggaaaggcggcagcggtgcagaaggcgctctcagacaagcaa 899 Query: 421 a---cttctgatttgctccccgttgagatggctgtgcttgacgatggagaattcacctgg 477 | | || || |||| || ||||||||||||||||| | |||||||||||||||||| Sbjct: 900 acctcgtcagacctgctgcctgttgagatggctgtgctacaagatggagaattcacctgg 959 Query: 478 ttcaccgacaaggaggcggtgtcgatgctgcagaac 513 ||||| || |||| |||||||| ||||||||||| Sbjct: 960 ttcactgataaggcagcggtgtccttgctgcagaac 995
>ref|NM_122350.2| Arabidopsis thaliana 6-phosphogluconolactonase AT5G24420 mRNA, complete cds Length = 1177 Score = 75.8 bits (38), Expect = 1e-10 Identities = 128/158 (81%) Strand = Plus / Plus Query: 187 gatctgcagcttcttggcatgggccctgacggtcacatcgcctctctcttcccaggccat 246 ||||| || ||||| || ||||| ||||| || ||||| || |||||||||||| |||| Sbjct: 534 gatctacaacttctagggatgggtcctgatggccacatggcgtctctcttcccaaaccat 593 Query: 247 ccacttgttaaagagaacaagaagtgggtcacccacatcttggactctccaaagccgcca 306 |||| | || ||||| |||| |||||||| ||||| ||||||||||| || ||| Sbjct: 594 ccacagatcaatgagaagcagaaatgggtcacttacatcaccgactctccaaaaccacca 653 Query: 307 ccacagagaatcacattcacgttcccggtgatcaactc 344 ||| |||||||||||||||| || ||||| |||||||| Sbjct: 654 ccaaagagaatcacattcactttaccggtcatcaactc 691
>gb|AY052737.1| Arabidopsis thaliana AT5g24420/K16H17_13 mRNA, complete cds Length = 759 Score = 75.8 bits (38), Expect = 1e-10 Identities = 128/158 (81%) Strand = Plus / Plus Query: 187 gatctgcagcttcttggcatgggccctgacggtcacatcgcctctctcttcccaggccat 246 ||||| || ||||| || ||||| ||||| || ||||| || |||||||||||| |||| Sbjct: 445 gatctacaacttctagggatgggtcctgatggccacatggcgtctctcttcccaaaccat 504 Query: 247 ccacttgttaaagagaacaagaagtgggtcacccacatcttggactctccaaagccgcca 306 |||| | || ||||| |||| |||||||| ||||| ||||||||||| || ||| Sbjct: 505 ccacagatcaatgagaagcagaaatgggtcacttacatcaccgactctccaaaaccacca 564 Query: 307 ccacagagaatcacattcacgttcccggtgatcaactc 344 ||| |||||||||||||||| || ||||| |||||||| Sbjct: 565 ccaaagagaatcacattcactttaccggtcatcaactc 602
>gb|AF378879.1|AF378879 Arabidopsis thaliana AT5g24420/K16H17_13 mRNA, complete cds Length = 1047 Score = 75.8 bits (38), Expect = 1e-10 Identities = 128/158 (81%) Strand = Plus / Plus Query: 187 gatctgcagcttcttggcatgggccctgacggtcacatcgcctctctcttcccaggccat 246 ||||| || ||||| || ||||| ||||| || ||||| || |||||||||||| |||| Sbjct: 534 gatctacaacttctagggatgggtcctgatggccacatggcgtctctcttcccaaaccat 593 Query: 247 ccacttgttaaagagaacaagaagtgggtcacccacatcttggactctccaaagccgcca 306 |||| | || ||||| |||| |||||||| ||||| ||||||||||| || ||| Sbjct: 594 ccacagatcaatgagaagcagaaatgggtcacttacatcaccgactctccaaaaccacca 653 Query: 307 ccacagagaatcacattcacgttcccggtgatcaactc 344 ||| |||||||||||||||| || ||||| |||||||| Sbjct: 654 ccaaagagaatcacattcactttaccggtcatcaactc 691
>gb|AY182169.1| Elaeis guineensis clone opsc155 putative 6-phosphogluconolactonase mRNA, partial cds Length = 937 Score = 75.8 bits (38), Expect = 1e-10 Identities = 92/110 (83%) Strand = Plus / Plus Query: 295 ccaaagccgccaccacagagaatcacattcacgttcccggtgatcaactcctctgcatat 354 |||||||| || ||| ||||||| || ||||| ||||| || |||||||| || |||||| Sbjct: 577 ccaaagcctccgccagagagaataactttcacattcccagtaatcaactcatcggcatat 636 Query: 355 gtcgccatggtggtaactggggctgggaaagctggtgctgtgcagaaggc 404 || || ||||||| ||||| |||| ||||||||||||||||| ||||| Sbjct: 637 gttgcactggtggtcactggatctggtaaagctggtgctgtgcacaaggc 686 Score = 42.1 bits (21), Expect = 1.9 Identities = 36/41 (87%) Strand = Plus / Plus Query: 40 aaggtaccaattcctactggtcaagtgtatgctatcaatga 80 ||||| ||||||||| | ||||| || |||||||||||||| Sbjct: 322 aaggtcccaattcctcccggtcaggtttatgctatcaatga 362
>gb|AY085203.1| Arabidopsis thaliana clone 13806 mRNA, complete sequence Length = 1078 Score = 75.8 bits (38), Expect = 1e-10 Identities = 128/158 (81%) Strand = Plus / Plus Query: 187 gatctgcagcttcttggcatgggccctgacggtcacatcgcctctctcttcccaggccat 246 ||||| || ||||| || ||||| ||||| || ||||| || |||||||||||| |||| Sbjct: 526 gatctacaacttctagggatgggtcctgatggccacatggcgtctctcttcccaaaccat 585 Query: 247 ccacttgttaaagagaacaagaagtgggtcacccacatcttggactctccaaagccgcca 306 |||| | || ||||| |||| |||||||| ||||| ||||||||||| || ||| Sbjct: 586 ccacagatcaatgagaagcagaaatgggtcacttacatcaccgactctccaaaaccacca 645 Query: 307 ccacagagaatcacattcacgttcccggtgatcaactc 344 ||| |||||||||||||||| || ||||| |||||||| Sbjct: 646 ccaaagagaatcacattcactttaccggtcatcaactc 683
>dbj|AB016884.1| Arabidopsis thaliana genomic DNA, chromosome 5, TAC clone:K16H17 Length = 45529 Score = 75.8 bits (38), Expect = 1e-10 Identities = 128/158 (81%) Strand = Plus / Minus Query: 187 gatctgcagcttcttggcatgggccctgacggtcacatcgcctctctcttcccaggccat 246 ||||| || ||||| || ||||| ||||| || ||||| || |||||||||||| |||| Sbjct: 40627 gatctacaacttctagggatgggtcctgatggccacatggcgtctctcttcccaaaccat 40568 Query: 247 ccacttgttaaagagaacaagaagtgggtcacccacatcttggactctccaaagccgcca 306 |||| | || ||||| |||| |||||||| ||||| ||||||||||| || ||| Sbjct: 40567 ccacagatcaatgagaagcagaaatgggtcacttacatcaccgactctccaaaaccacca 40508 Query: 307 ccacagagaatcacattcacgttcccggtgatcaactc 344 ||| |||||||||||||||| || ||||| |||||||| Sbjct: 40507 ccaaagagaatcacattcactttaccggtcatcaactc 40470 Score = 60.0 bits (30), Expect = 8e-06 Identities = 42/46 (91%) Strand = Plus / Minus Query: 311 agagaatcacattcacgttcccggtgatcaactcctctgcatatgt 356 |||||||||| |||||||||||||| |||||||| |||||| |||| Sbjct: 34092 agagaatcaccttcacgttcccggtcatcaactcatctgcacatgt 34047
>emb|BX830567.1|CNS0A1E0 Arabidopsis thaliana Full-length cDNA Complete sequence from clone GSLTFB90ZD03 of Flowers and buds of strain col-0 of Arabidopsis thaliana (thale cress) Length = 1051 Score = 67.9 bits (34), Expect = 3e-08 Identities = 127/158 (80%) Strand = Plus / Plus Query: 187 gatctgcagcttcttggcatgggccctgacggtcacatcgcctctctcttcccaggccat 246 ||||| || ||||| || ||||| ||||| || ||||| || |||||||||||| |||| Sbjct: 522 gatctacaacttctagggatgggtcctgatggccacatggcgtctctcttcccaaaccat 581 Query: 247 ccacttgttaaagagaacaagaagtgggtcacccacatcttggactctccaaagccgcca 306 |||| | || ||||| |||| |||||||| |||| ||||||||||| || ||| Sbjct: 582 ccacagatcaatgagaagcagaaatgggtcacttacataaccgactctccaaaaccacca 641 Query: 307 ccacagagaatcacattcacgttcccggtgatcaactc 344 ||| |||||||||||||||| || ||||| |||||||| Sbjct: 642 ccaaagagaatcacattcactttaccggtcatcaactc 679
>ref|NM_122348.2| Arabidopsis thaliana EMB2024; 6-phosphogluconolactonase/ catalytic AT5G24400 (EMB2024) mRNA, complete cds Length = 1248 Score = 60.0 bits (30), Expect = 8e-06 Identities = 42/46 (91%) Strand = Plus / Plus Query: 311 agagaatcacattcacgttcccggtgatcaactcctctgcatatgt 356 |||||||||| |||||||||||||| |||||||| |||||| |||| Sbjct: 841 agagaatcaccttcacgttcccggtcatcaactcatctgcacatgt 886
>emb|BX832117.1|CNS0A166 Arabidopsis thaliana Full-length cDNA Complete sequence from clone GSLTPGH52ZF11 of Hormone Treated Callus of strain col-0 of Arabidopsis thaliana (thale cress) Length = 1089 Score = 60.0 bits (30), Expect = 8e-06 Identities = 42/46 (91%) Strand = Plus / Plus Query: 311 agagaatcacattcacgttcccggtgatcaactcctctgcatatgt 356 |||||||||| |||||||||||||| |||||||| |||||| |||| Sbjct: 772 agagaatcaccttcacgttcccggtcatcaactcatctgcacatgt 817
>emb|BX833820.1|CNS0A0L5 Arabidopsis thaliana Full-length cDNA Complete sequence from clone GSLTSIL79ZA10 of Silique of strain col-0 of Arabidopsis thaliana (thale cress) Length = 1116 Score = 60.0 bits (30), Expect = 8e-06 Identities = 42/46 (91%) Strand = Plus / Plus Query: 311 agagaatcacattcacgttcccggtgatcaactcctctgcatatgt 356 |||||||||| |||||||||||||| |||||||| |||||| |||| Sbjct: 765 agagaatcaccttcacgttcccggtcatcaactcatctgcacatgt 810
>gb|AY086161.1| Arabidopsis thaliana clone 21890 mRNA, complete sequence Length = 1250 Score = 60.0 bits (30), Expect = 8e-06 Identities = 42/46 (91%) Strand = Plus / Plus Query: 311 agagaatcacattcacgttcccggtgatcaactcctctgcatatgt 356 |||||||||| |||||||||||||| |||||||| |||||| |||| Sbjct: 842 agagaatcaccttcacgttcccggtcatcaactcatctgcacatgt 887
>gb|BT001923.1| Arabidopsis thaliana clone C105102 putative 6-phosphogluconolactonase (At5g24400) mRNA, complete cds Length = 1009 Score = 60.0 bits (30), Expect = 8e-06 Identities = 42/46 (91%) Strand = Plus / Plus Query: 311 agagaatcacattcacgttcccggtgatcaactcctctgcatatgt 356 |||||||||| |||||||||||||| |||||||| |||||| |||| Sbjct: 788 agagaatcaccttcacgttcccggtcatcaactcatctgcacatgt 833
>gb|AY030298.1| Brassica carinata putative 6-phosphogluconolactonase (6PGL) mRNA, complete cds Length = 1072 Score = 56.0 bits (28), Expect = 1e-04 Identities = 58/68 (85%) Strand = Plus / Plus Query: 183 gttcgatctgcagcttcttggcatgggccctgacggtcacatcgcctctctcttcccagg 242 ||||||||| |||||||| || ||||| ||||| || ||||| || ||||||||||| || Sbjct: 481 gttcgatctccagcttctagggatgggtcctgatggccacatggcgtctctcttccctgg 540 Query: 243 ccatccac 250 ||||||| Sbjct: 541 acatccac 548 Score = 40.1 bits (20), Expect = 7.4 Identities = 47/56 (83%) Strand = Plus / Plus Query: 289 gactctccaaagccgccaccacagagaatcacattcacgttcccggtgatcaactc 344 ||||||||||| | |||||| ||||||||||||||| || ||||| || ||||| Sbjct: 587 gactctccaaaactgccacctaggagaatcacattcactttaccggtcattaactc 642
>ref|NM_114796.2| Arabidopsis thaliana 6-phosphogluconolactonase/ catalytic AT3G49360 mRNA, complete cds Length = 1038 Score = 50.1 bits (25), Expect = 0.008 Identities = 49/57 (85%) Strand = Plus / Plus Query: 183 gttcgatctgcagcttcttggcatgggccctgacggtcacatcgcctctctcttccc 239 ||||||||| |||||||| || ||||| || ||||||||||| || ||||| ||||| Sbjct: 556 gttcgatcttcagcttctaggtatgggaccggacggtcacatggcgtctctattccc 612
>emb|AL132956.2|ATF2K15 Arabidopsis thaliana DNA chromosome 3, BAC clone F2K15 Length = 129757 Score = 50.1 bits (25), Expect = 0.008 Identities = 49/57 (85%) Strand = Plus / Minus Query: 183 gttcgatctgcagcttcttggcatgggccctgacggtcacatcgcctctctcttccc 239 ||||||||| |||||||| || ||||| || ||||||||||| || ||||| ||||| Sbjct: 106185 gttcgatcttcagcttctaggtatgggaccggacggtcacatggcgtctctattccc 106129
>gb|BT024902.1| Arabidopsis thaliana At3g49360 mRNA, complete cds Length = 780 Score = 50.1 bits (25), Expect = 0.008 Identities = 49/57 (85%) Strand = Plus / Plus Query: 183 gttcgatctgcagcttcttggcatgggccctgacggtcacatcgcctctctcttccc 239 ||||||||| |||||||| || ||||| || ||||||||||| || ||||| ||||| Sbjct: 441 gttcgatcttcagcttctaggtatgggaccggacggtcacatggcgtctctattccc 497
>gb|AC012329.5|AC012329 Arabidopsis thaliana chromosome 1 BAC T1G12 genomic sequence, complete sequence Length = 80367 Score = 50.1 bits (25), Expect = 0.008 Identities = 49/57 (85%) Strand = Plus / Minus Query: 183 gttcgatctgcagcttcttggcatgggccctgacggtcacatcgcctctctcttccc 239 ||||||||| |||||||| || ||||| || ||||||||||| || ||||| ||||| Sbjct: 24320 gttcgatcttcagcttctaggtatgggaccggacggtcacatggcgtctctattccc 24264
>gb|AY084434.1| Arabidopsis thaliana clone 108207 mRNA, complete sequence Length = 1024 Score = 50.1 bits (25), Expect = 0.008 Identities = 49/57 (85%) Strand = Plus / Plus Query: 183 gttcgatctgcagcttcttggcatgggccctgacggtcacatcgcctctctcttccc 239 ||||||||| |||||||| || ||||| || ||||||||||| || ||||| ||||| Sbjct: 556 gttcgatcttcagcttctaggtatgggaccggacggtcacatggcgtctctattccc 612
>dbj|AK117146.1| Arabidopsis thaliana At3g49360 mRNA for putative 6-phosphogluconolactonase, complete cds, clone: RAFL16-69-A12 Length = 962 Score = 50.1 bits (25), Expect = 0.008 Identities = 49/57 (85%) Strand = Plus / Plus Query: 183 gttcgatctgcagcttcttggcatgggccctgacggtcacatcgcctctctcttccc 239 ||||||||| |||||||| || ||||| || ||||||||||| || ||||| ||||| Sbjct: 493 gttcgatcttcagcttctaggtatgggaccggacggtcacatggcgtctctattccc 549
>ref|NM_101239.2| Arabidopsis thaliana 6-phosphogluconolactonase/ catalytic AT1G13700 mRNA, complete cds Length = 1387 Score = 48.1 bits (24), Expect = 0.030 Identities = 39/44 (88%) Strand = Plus / Plus Query: 301 ccgccaccacagagaatcacattcacgttcccggtgatcaactc 344 ||||||||| |||||||||||||||| || || || |||||||| Sbjct: 635 ccgccaccagagagaatcacattcactttgcccgtcatcaactc 678
>gb|BT015753.1| Arabidopsis thaliana At1g13700 mRNA, complete cds Length = 807 Score = 48.1 bits (24), Expect = 0.030 Identities = 39/44 (88%) Strand = Plus / Plus Query: 301 ccgccaccacagagaatcacattcacgttcccggtgatcaactc 344 ||||||||| |||||||||||||||| || || || |||||||| Sbjct: 568 ccgccaccagagagaatcacattcactttgcccgtcatcaactc 611
>gb|BT014903.1| Arabidopsis thaliana At1g13700 gene, complete cds Length = 958 Score = 48.1 bits (24), Expect = 0.030 Identities = 39/44 (88%) Strand = Plus / Plus Query: 301 ccgccaccacagagaatcacattcacgttcccggtgatcaactc 344 ||||||||| |||||||||||||||| || || || |||||||| Sbjct: 639 ccgccaccagagagaatcacattcactttgcccgtcatcaactc 682
>emb|BX814265.1|CNS0AAV2 Arabidopsis thaliana Full-length cDNA Complete sequence from clone GSLTFB65ZB01 of Flowers and buds of strain col-0 of Arabidopsis thaliana (thale cress) Length = 1211 Score = 48.1 bits (24), Expect = 0.030 Identities = 39/44 (88%) Strand = Plus / Plus Query: 301 ccgccaccacagagaatcacattcacgttcccggtgatcaactc 344 ||||||||| |||||||||||||||| || || || |||||||| Sbjct: 872 ccgccaccagagagaatcacattcactttgcccgtcatcaactc 915
>gb|AC027656.4|F21F23 Sequence of BAC F21F23 from Arabidopsis thaliana chromosome 1, complete sequence Length = 79054 Score = 48.1 bits (24), Expect = 0.030 Identities = 39/44 (88%) Strand = Plus / Minus Query: 301 ccgccaccacagagaatcacattcacgttcccggtgatcaactc 344 ||||||||| |||||||||||||||| || || || |||||||| Sbjct: 48832 ccgccaccagagagaatcacattcactttgcccgtcatcaactc 48789
>gb|AY814674.1| Schistosoma japonicum SJCHGC05391 protein mRNA, complete cds Length = 820 Score = 44.1 bits (22), Expect = 0.47 Identities = 34/38 (89%) Strand = Plus / Plus Query: 184 ttcgatctgcagcttcttggcatgggccctgacggtca 221 |||||||| | ||||||||||||||| || |||||||| Sbjct: 416 ttcgatcttctgcttcttggcatgggtccagacggtca 453
>ref|XM_483640.1| Oryza sativa (japonica cultivar-group), mRNA Length = 1416 Score = 42.1 bits (21), Expect = 1.9 Identities = 36/41 (87%) Strand = Plus / Plus Query: 364 gtggtaactggggctgggaaagctggtgctgtgcagaaggc 404 ||||| ||||| |||||||||||||| || ||||| ||||| Sbjct: 893 gtggtcactggtgctgggaaagctggggcagtgcataaggc 933
>gb|AC004934.1| Homo sapiens PAC clone RP5-953B5 from 7, complete sequence Length = 126253 Score = 42.1 bits (21), Expect = 1.9 Identities = 21/21 (100%) Strand = Plus / Minus Query: 91 gctgaaggagcagcagaggac 111 ||||||||||||||||||||| Sbjct: 39181 gctgaaggagcagcagaggac 39161
>emb|AL049713.20|HSDJ247C2 Human DNA sequence from clone RP1-247C2 on chromosome 11p13 Contains STSs and GSSs, complete sequence Length = 98360 Score = 42.1 bits (21), Expect = 1.9 Identities = 21/21 (100%) Strand = Plus / Minus Query: 282 catcttggactctccaaagcc 302 ||||||||||||||||||||| Sbjct: 2215 catcttggactctccaaagcc 2195
>gb|AC107939.5| Homo sapiens chromosome 11, clone RP11-48O9, complete sequence Length = 145264 Score = 42.1 bits (21), Expect = 1.9 Identities = 21/21 (100%) Strand = Plus / Minus Query: 282 catcttggactctccaaagcc 302 ||||||||||||||||||||| Sbjct: 58417 catcttggactctccaaagcc 58397
>gb|AC026693.5| Homo sapiens chromosome 5 clone CTC-261E10, complete sequence Length = 92250 Score = 42.1 bits (21), Expect = 1.9 Identities = 21/21 (100%) Strand = Plus / Minus Query: 154 gcaatgtcaaaaacaactggg 174 ||||||||||||||||||||| Sbjct: 14798 gcaatgtcaaaaacaactggg 14778
>dbj|AP008214.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 8, complete sequence Length = 28434780 Score = 42.1 bits (21), Expect = 1.9 Identities = 36/41 (87%) Strand = Plus / Plus Query: 364 gtggtaactggggctgggaaagctggtgctgtgcagaaggc 404 ||||| ||||| |||||||||||||| || ||||| ||||| Sbjct: 27398673 gtggtcactggtgctgggaaagctggggcagtgcataaggc 27398713
>gb|AC091955.2| Homo sapiens chromosome 5 clone RP11-429P5, complete sequence Length = 101948 Score = 42.1 bits (21), Expect = 1.9 Identities = 21/21 (100%) Strand = Plus / Plus Query: 154 gcaatgtcaaaaacaactggg 174 ||||||||||||||||||||| Sbjct: 6511 gcaatgtcaaaaacaactggg 6531
>dbj|AK109374.2| Oryza sativa (japonica cultivar-group) cDNA clone:006-208-H02, full insert sequence Length = 1440 Score = 42.1 bits (21), Expect = 1.9 Identities = 36/41 (87%) Strand = Plus / Plus Query: 364 gtggtaactggggctgggaaagctggtgctgtgcagaaggc 404 ||||| ||||| |||||||||||||| || ||||| ||||| Sbjct: 1011 gtggtcactggtgctgggaaagctggggcagtgcataaggc 1051
>dbj|AP004704.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 8, PAC clone:P0544G09 Length = 137481 Score = 42.1 bits (21), Expect = 1.9 Identities = 36/41 (87%) Strand = Plus / Plus Query: 364 gtggtaactggggctgggaaagctggtgctgtgcagaaggc 404 ||||| ||||| |||||||||||||| || ||||| ||||| Sbjct: 25468 gtggtcactggtgctgggaaagctggggcagtgcataaggc 25508
>dbj|AK073704.1| Oryza sativa (japonica cultivar-group) cDNA clone:J033060E10, full insert sequence Length = 1417 Score = 42.1 bits (21), Expect = 1.9 Identities = 36/41 (87%) Strand = Plus / Plus Query: 364 gtggtaactggggctgggaaagctggtgctgtgcagaaggc 404 ||||| ||||| |||||||||||||| || ||||| ||||| Sbjct: 893 gtggtcactggtgctgggaaagctggggcagtgcataaggc 933
>gb|M24359.1|RATPKM12 Rat pyruvate kinase M1 and M2 subunit genes, complete cds Length = 11788 Score = 42.1 bits (21), Expect = 1.9 Identities = 21/21 (100%) Strand = Plus / Plus Query: 369 aactggggctgggaaagctgg 389 ||||||||||||||||||||| Sbjct: 1017 aactggggctgggaaagctgg 1037
>gb|AC112964.8| Mus musculus chromosome 8, clone RP24-82M4, complete sequence Length = 193076 Score = 40.1 bits (20), Expect = 7.4 Identities = 20/20 (100%) Strand = Plus / Plus Query: 256 aaagagaacaagaagtgggt 275 |||||||||||||||||||| Sbjct: 50674 aaagagaacaagaagtgggt 50693
>gb|AC138359.8| Mus musculus chromosome 1, clone RP24-383H12, complete sequence Length = 217891 Score = 40.1 bits (20), Expect = 7.4 Identities = 20/20 (100%) Strand = Plus / Plus Query: 256 aaagagaacaagaagtgggt 275 |||||||||||||||||||| Sbjct: 109886 aaagagaacaagaagtgggt 109905
>gb|AC163769.4| Pan troglodytes BAC clone CH251-59O12 from chromosome unknown, complete sequence Length = 185010 Score = 40.1 bits (20), Expect = 7.4 Identities = 22/23 (95%) Strand = Plus / Minus Query: 21 ctggnatgggttcctctccaagg 43 |||| |||||||||||||||||| Sbjct: 99506 ctgggatgggttcctctccaagg 99484
>gb|BT014125.1| Lycopersicon esculentum clone 133233F, mRNA sequence Length = 1243 Score = 40.1 bits (20), Expect = 7.4 Identities = 68/84 (80%) Strand = Plus / Plus Query: 268 aagtgggtcacccacatcttggactctccaaagccgccaccacagagaatcacattcacg 327 |||||||||||| |||| |||||||||||| || ||||| | ||||| ||||| || Sbjct: 768 aagtgggtcaccttcatcaaggactctccaaaacctccaccgaacagaattacatttaca 827 Query: 328 ttcccggtgatcaactcctctgca 351 ||||| || || ||||| |||||| Sbjct: 828 ttccctgtaataaactcatctgca 851
>gb|AC131710.3| Mus musculus BAC clone RP23-187M22 from 15, complete sequence Length = 224591 Score = 40.1 bits (20), Expect = 7.4 Identities = 23/24 (95%) Strand = Plus / Plus Query: 90 tgctgaaggagcagcagaggacta 113 ||||||||||||| |||||||||| Sbjct: 19826 tgctgaaggagcaacagaggacta 19849
>emb|BX572604.1| Rhodopseudomonas palustris CGA009 complete genome; segment 12/16 Length = 348068 Score = 40.1 bits (20), Expect = 7.4 Identities = 20/20 (100%) Strand = Plus / Minus Query: 444 gatggctgtgcttgacgatg 463 |||||||||||||||||||| Sbjct: 23249 gatggctgtgcttgacgatg 23230
>dbj|AK093916.1| Homo sapiens cDNA FLJ36597 fis, clone TRACH2014442, highly similar to TRANSFORMING GROWTH FACTOR-BETA INDUCED PROTEIN IG-H3 PRECURSOR Length = 2659 Score = 40.1 bits (20), Expect = 7.4 Identities = 20/20 (100%) Strand = Plus / Plus Query: 384 agctggtgctgtgcagaagg 403 |||||||||||||||||||| Sbjct: 157 agctggtgctgtgcagaagg 176
>emb|CR478352.2| Mouse DNA sequence from clone WI1-1892F9 on chromosome X, complete sequence Length = 28067 Score = 40.1 bits (20), Expect = 7.4 Identities = 23/24 (95%) Strand = Plus / Plus Query: 90 tgctgaaggagcagcagaggacta 113 ||||||||||||| |||||||||| Sbjct: 8928 tgctgaaggagcaacagaggacta 8951
>gb|AC044790.4|AC044790 Homo sapiens chromosome 11 clone RP11-141J21 containing NRXN2 (NRXN2) gene, partial cds; and RST and OAT4 genes, complete cds, complete sequence Length = 170114 Score = 40.1 bits (20), Expect = 7.4 Identities = 22/23 (95%) Strand = Plus / Minus Query: 21 ctggnatgggttcctctccaagg 43 |||| |||||||||||||||||| Sbjct: 13005 ctgggatgggttcctctccaagg 12983
>gb|AC000134.14| Homo sapiens Chromosome 11q13 BAC Clone 137c7, complete sequence Length = 203300 Score = 40.1 bits (20), Expect = 7.4 Identities = 22/23 (95%) Strand = Plus / Plus Query: 21 ctggnatgggttcctctccaagg 43 |||| |||||||||||||||||| Sbjct: 56608 ctgggatgggttcctctccaagg 56630
>gb|AY074411.1| Trichosurus vulpecula clone TrvuVK57 immunoglobulin kappa light chain variable region mRNA, partial cds Length = 459 Score = 40.1 bits (20), Expect = 7.4 Identities = 20/20 (100%) Strand = Plus / Minus Query: 238 ccaggccatccacttgttaa 257 |||||||||||||||||||| Sbjct: 201 ccaggccatccacttgttaa 182
>dbj|AP001092.5| Homo sapiens genomic DNA, chromosome 11 clone:RP11-727K3, complete sequence Length = 160739 Score = 40.1 bits (20), Expect = 7.4 Identities = 22/23 (95%) Strand = Plus / Plus Query: 21 ctggnatgggttcctctccaagg 43 |||| |||||||||||||||||| Sbjct: 147924 ctgggatgggttcctctccaagg 147946
>gb|AC156573.3| Mus musculus BAC clone RP23-133P6 from chromosome 15, complete sequence Length = 198278 Score = 40.1 bits (20), Expect = 7.4 Identities = 23/24 (95%) Strand = Plus / Plus Query: 90 tgctgaaggagcagcagaggacta 113 ||||||||||||| |||||||||| Sbjct: 144067 tgctgaaggagcaacagaggacta 144090
>gb|M77201.1|HUMXXX Homo sapiens DNA sequence Length = 2032 Score = 40.1 bits (20), Expect = 7.4 Identities = 22/23 (95%) Strand = Plus / Plus Query: 21 ctggnatgggttcctctccaagg 43 |||| |||||||||||||||||| Sbjct: 649 ctgggatgggttcctctccaagg 671 Database: nt Posted date: May 29, 2006 11:10 AM Number of letters in database: 3,984,495,279 Number of sequences in database: 917,343 Database: /shigen/export/home/twatanab/db/nt/nt.01 Posted date: May 29, 2006 11:16 AM Number of letters in database: 3,988,174,986 Number of sequences in database: 835,257 Database: /shigen/export/home/twatanab/db/nt/nt.02 Posted date: May 29, 2006 11:21 AM Number of letters in database: 3,991,246,324 Number of sequences in database: 771,481 Database: /shigen/export/home/twatanab/db/nt/nt.03 Posted date: May 29, 2006 11:27 AM Number of letters in database: 3,990,718,311 Number of sequences in database: 977,174 Database: /shigen/export/home/twatanab/db/nt/nt.04 Posted date: May 29, 2006 11:29 AM Number of letters in database: 1,278,410,368 Number of sequences in database: 400,813 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 4,770,067 Number of Sequences: 3902068 Number of extensions: 4770067 Number of successful extensions: 85100 Number of sequences better than 10.0: 55 Number of HSP's better than 10.0 without gapping: 55 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 84941 Number of HSP's gapped (non-prelim): 143 length of query: 546 length of database: 17,233,045,268 effective HSP length: 23 effective length of query: 523 effective length of database: 17,143,297,704 effective search space: 8965944699192 effective search space used: 8965944699192 T: 0 A: 0 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 20 (40.1 bits)