>CLOCK_DROME (O61735) Circadian locomoter output cycles protein kaput (dCLOCK)|
            (dPAS1)
          Length = 1027

 Score = 33.1 bits (74), Expect = 0.64
 Identities = 34/126 (26%), Positives = 52/126 (41%)
 Frame = -2

Query: 518  LYHDHT*NIVQQRLAHSQTTMA*QIHLSKPWHNSPQQWKQTDG*TQPVVGTNSGTEQIQP 339
            L+  H  N+ QQ  +HSQ     Q H  +  H   QQ +Q     Q         +Q Q 
Sbjct: 775  LHTQHQHNLQQQHQSHSQL----QQHTQQQ-HQQQQQQQQQQQQQQQQQQQQQQQQQQQQ 829

Query: 338  QQSSRISYQPQQGSRDFINSDRLMIRCKYRNRSAKVAHSQQPQTQNSPWKTVCRINSTSA 159
            QQ  ++  Q Q    D +  + +     + N S    HS   Q+  +P+ +    N+ S 
Sbjct: 830  QQQQQLQLQQQN---DILLREDIDDIDAFLNLSP--LHSLGSQSTINPFNSSSNNNNQSY 884

Query: 158  QGGSNI 141
             GGSN+
Sbjct: 885  NGGSNL 890

>STAN_DROME (Q9V5N8) Protocadherin-like wing polarity protein stan precursor|
            (Protein starry night) (Protein flamingo)
          Length = 3574

 Score = 32.0 bits (71), Expect = 1.4
 Identities = 27/91 (29%), Positives = 36/91 (39%), Gaps = 6/91 (6%)
 Frame = +2

Query: 122  TSILYCKC--YSPPEHWLSLSCRLFSMVSFESVVVGCGPPLLNGFCTC---ILSSICLNL 286
            T   YCK   Y PP     LSC  +S+ SF      C P  L G C C   ++   C + 
Sbjct: 2074 TGQCYCKTNHYQPPNETACLSCDCYSIGSFSG---ACNP--LTGQCECREGVIGRRCDSC 2128

Query: 287  *NPCCPAVV-GMKSCCSAVVESVLYQNWYPQ 376
             NP     + G +    A   S     W+P+
Sbjct: 2129 SNPYAEVTLSGCEVVYDACPRSFAGGVWWPR 2159

>HTF4_HUMAN (Q99081) Transcription factor 12 (Transcription factor HTF-4)|
           (E-box-binding protein) (DNA-binding protein HTF4)
          Length = 682

 Score = 30.8 bits (68), Expect = 3.2
 Identities = 27/88 (30%), Positives = 35/88 (39%), Gaps = 12/88 (13%)
 Frame = -2

Query: 425 HNSPQQWKQTDG*TQPVVGTNSGTEQIQPQQSS---------RISYQPQQGSRDFINSDR 273
           HNS   W  ++G +QP  G   GT      QSS         R+SY P   S   IN+  
Sbjct: 232 HNSSDLWSSSNGMSQPGFGGILGTSTSHMSQSSSYGNLHSHDRLSYPPHSVSPTDINTSL 291

Query: 272 LMIRCKYR---NRSAKVAHSQQPQTQNS 198
             +   +R   + S  VA S  P    S
Sbjct: 292 PPMSSFHRGSTSSSPYVAASHTPPINGS 319

>ECO_DROME (Q9VS50) N-acetyltransferase eco (EC 2.3.1.-) (Establishment of|
           cohesion 1 homolog) (ECO1 homolog)
          Length = 1052

 Score = 30.8 bits (68), Expect = 3.2
 Identities = 26/75 (34%), Positives = 37/75 (49%), Gaps = 2/75 (2%)
 Frame = -2

Query: 473 HSQTTMA*QIHLSKPWHNSPQQWKQTDG*TQPVVGTNS--GTEQIQPQQSSRISYQPQQG 300
           HS  T A Q+H +KP   SP +  Q+D   +P    NS   TE  + + S  IS + +  
Sbjct: 211 HSLKTTA-QVHTTKPKKTSPAEESQSDD-EKPSSSKNSRKNTEVRETRSSQIISPKTRNR 268

Query: 299 SRDFINSDRLMIRCK 255
            R F ++D   I CK
Sbjct: 269 RRPFTSAD---INCK 280

>VP26_VZVD (P09279) Capsid protein VP26|
          Length = 235

 Score = 30.0 bits (66), Expect = 5.4
 Identities = 29/97 (29%), Positives = 38/97 (39%)
 Frame = -2

Query: 437 SKPWHNSPQQWKQTDG*TQPVVGTNSGTEQIQPQQSSRISYQPQQGSRDFINSDRLMIRC 258
           S P H  PQ    + G  Q VV  +SG +  Q  QSS +  QP  GS             
Sbjct: 149 SSPQHPPPQTTSASVGQQQHVVSGSSGQQPQQGAQSSTV--QPTTGSPP----------- 195

Query: 257 KYRNRSAKVAHSQQPQTQNSPWKTVCRINSTSAQGGS 147
                +  V  S  P TQN+P     +  S + Q G+
Sbjct: 196 ----AAQGVPQSTPPPTQNTPQGGKGQTLSHTGQSGN 228

>KI67_HUMAN (P46013) Antigen KI-67|
          Length = 3256

 Score = 29.6 bits (65), Expect = 7.1
 Identities = 20/83 (24%), Positives = 40/83 (48%)
 Frame = -2

Query: 386  TQPVVGTNSGTEQIQPQQSSRISYQPQQGSRDFINSDRLMIRCKYRNRSAKVAHSQQPQT 207
            +QP V   SG      Q+S+++  Q Q+G  +  NSD + +R + + +S   A + + ++
Sbjct: 3165 SQPKVAEESGG-----QKSAKVLMQNQKGKGEAGNSDSMCLRSR-KTKSQPAASTLESKS 3218

Query: 206  QNSPWKTVCRINSTSAQGGSNIC 138
                 ++V R      +   N+C
Sbjct: 3219 VQRVTRSVKRCAENPKKAEDNVC 3241

>ECM27_YEAST (P47144) Extracellular matrix protein 27|
          Length = 725

 Score = 29.6 bits (65), Expect = 7.1
 Identities = 17/48 (35%), Positives = 23/48 (47%)
 Frame = +3

Query: 234 LC*TVSVLASYHQSV*IYEIPAALLWLV*NPAALLWLNLFCTRIGTHN 377
           LC  +SVL +YH    +Y  P  L       A +L L  F T++  HN
Sbjct: 455 LCSILSVLLTYHLGYLVYLFPLILAM-----ALILLLTAFITKVNLHN 497

>BAR3_SCHCO (P56502) Pheromone B alpha 3 receptor|
          Length = 625

 Score = 29.6 bits (65), Expect = 7.1
 Identities = 17/69 (24%), Positives = 34/69 (49%)
 Frame = +2

Query: 218 VGCGPPLLNGFCTCILSSICLNL*NPCCPAVVGMKSCCSAVVESVLYQNWYPQLAEFIHL 397
           VGC P + N   T ++S I         P ++GM S   +V+  + +     Q ++F+H 
Sbjct: 145 VGCYPAVFNTPVTYVVSYIW--------PVLIGMVSATYSVLALIEFNRHRLQFSQFLHS 196

Query: 398 SASIAEVNY 424
           +++++   Y
Sbjct: 197 NSTLSVSRY 205

>TLK1_CAEEL (P34314) Serine/threonine-protein kinase tousled-like 1 (EC|
           2.7.11.1) (Tousled-like kinase 1)
          Length = 965

 Score = 29.3 bits (64), Expect = 9.3
 Identities = 26/96 (27%), Positives = 40/96 (41%), Gaps = 7/96 (7%)
 Frame = -2

Query: 563 SQPKAEQQGFISSGWLYHDHT*NIVQQRLAHSQT-TMA*QIHLSKP----WHNSPQQWKQ 399
           S+   E + + S     H H   + QQ+  H Q   M+   H  +     +H   QQ++Q
Sbjct: 132 SEDSIEMRDYNSGVHHMHPHQMQMQQQQQHHQQQYNMSYHNHQQQMQQMHYHQQQQQYQQ 191

Query: 398 TDG*TQPVVGTNSGTEQIQPQQSS--RISYQPQQGS 297
                  +       +Q QPQQ S  + + QPQQ S
Sbjct: 192 QQAQHHQMYAPQIQQQQQQPQQQSQQQSAQQPQQSS 227

>FLID_CAMJE (Q9PHW6) Flagellar hook-associated protein 2 (HAP2) (Filament cap|
           protein) (Flagellar cap protein)
          Length = 642

 Score = 29.3 bits (64), Expect = 9.3
 Identities = 14/32 (43%), Positives = 17/32 (53%)
 Frame = -1

Query: 243 FSKGGPQPTTTDSKLTMENSLQDKLNQCSGGE 148
           F   G + T T  K T    L DK+N+ SGGE
Sbjct: 138 FFSNGKEYTVTVDKNTTYRDLADKINEASGGE 169


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.318    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 93,762,373
Number of Sequences: 219361
Number of extensions: 2019544
Number of successful extensions: 4575
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 4422
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 4573
length of database: 80,573,946
effective HSP length: 107
effective length of database: 57,102,319
effective search space used: 5367617986
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)