Clone Information

BLAST Search Result

Clone Name	bags8g14
Clone Library Name	barley_pub

No.	Definition	Score (bits)	E Value
1	RL5A_ORYSA (P49625) 60S ribosomal protein L5-1	222	3e-58
2	RL5B_ORYSA (Q8L4L4) 60S ribosomal protein L5-2	220	1e-57
3	RL5_ARATH (P49227) 60S ribosomal protein L5	205	3e-53
4	RL5_CUCSA (Q6UNT2) 60S ribosomal protein L5	204	6e-53
5	RL5_DUNSA (O22608) 60S ribosomal protein L5	143	2e-34
6	RL5_NEUCR (O59953) 60S ribosomal protein L5 (CPR4)	140	2e-33
7	RL5_CHICK (P22451) 60S ribosomal protein L5	139	2e-33
8	RL5_HELAN (O65353) 60S ribosomal protein L5	139	3e-33
9	RL5_CAEEL (P49405) 60S ribosomal protein L5	139	4e-33
10	RL5_ANOGA (O44248) 60S ribosomal protein L5	138	5e-33
11	RL5_MACFA (Q4R5M0) 60S ribosomal protein L5	138	6e-33
12	RL5_HUMAN (P46777) 60S ribosomal protein L5	138	6e-33
13	RL5B_XENLA (P15126) 60S ribosomal protein L5-B	136	2e-32
14	RL5A_XENLA (P15125) 60S ribosomal protein L5-A	136	2e-32
15	RL5_STYCL (Q26481) 60S ribosomal protein L5	136	2e-32
16	RL5_RAT (P09895) 60S ribosomal protein L5	136	2e-32
17	RL5_MOUSE (P47962) 60S ribosomal protein L5	134	7e-32
18	RL5_BOMMO (O76190) 60S ribosomal protein L5	130	1e-30
19	RL5B_SCHPO (O74306) 60S ribosomal protein L5-B	121	8e-28
20	RL5A_SCHPO (P52822) 60S ribosomal protein L5-A	121	8e-28
21	RL5_YEAST (P26321) 60S ribosomal protein L5 (L1) (YL3) (Ribosoma...	118	5e-27
22	RL5_SOLME (P93779) 60S ribosomal protein L5 (Fragment)	74	1e-13
23	RL18_PYRAE (Q8ZVV7) 50S ribosomal protein L18P	47	3e-05
24	RL18_METKA (Q8TZA5) 50S ribosomal protein L18P	46	3e-05
25	RL18_METMP (Q6LXD4) 50S ribosomal protein L18P	46	4e-05
26	RL18_METJA (P54044) 50S ribosomal protein L18P	45	7e-05
27	RL5_PIG (Q95276) 60S ribosomal protein L5 (Fragment)	42	6e-04
28	RL18_AERPE (Q9YF94) 50S ribosomal protein L18P	42	8e-04
29	RL18_PYRKO (Q5JJG7) 50S ribosomal protein L18P	41	0.001
30	RL18_PYRAB (Q9V1V4) 50S ribosomal protein L18P	41	0.001
31	RL18_PYRFU (Q9HH80) 50S ribosomal protein L18P (PfL18)	40	0.003
32	RL18_NANEQ (Q74MJ4) 50S ribosomal protein L18P	40	0.003
33	RL18_SULTO (Q975J9) 50S ribosomal protein L18P	39	0.005
34	RL18_PYRHO (O59438) 50S ribosomal protein L18P	39	0.007
35	RL18_METVA (P14033) 50S ribosomal protein L18P	38	0.012
36	RL18_METTH (O26130) 50S ribosomal protein L18P	37	0.020
37	FOXJ3_MOUSE (Q8BUR3) Forkhead box protein J3	37	0.026
38	RL18_HALSA (P50562) 50S ribosomal protein L18P (HCuL18) (HSal18)...	37	0.026
39	FOXJ3_HUMAN (Q9UPW0) Forkhead box protein J3	36	0.044
40	RL18_HALMA (P14123) 50S ribosomal protein L18P (Hmal18) (Hl12)	33	0.29
41	RL18_ARCFU (O28373) 50S ribosomal protein L18P	33	0.29
42	OMB_DROME (Q24432) Optomotor-blind protein (Lethal(1)optomotor-b...	32	0.83
43	MYF6_FUGRU (Q6SYV5) Myogenic factor 6 (Myf-6) (Muscle-specific r...	31	1.1
44	HRG_BOVIN (P33433) Histidine-rich glycoprotein (Histidine-prolin...	31	1.4
45	NIPB_DROME (Q7PLI2) Nipped-B protein (SCC2 homolog)	31	1.4
46	ZEP1_HUMAN (P15822) Zinc finger protein 40 (Human immunodeficien...	30	1.9
47	CTR3_MOUSE (P70423) Cationic amino acid transporter 3 (CAT-3) (S...	30	2.4
48	SCNNB_RAT (P37090) Amiloride-sensitive sodium channel beta-subun...	30	2.4
49	PXDC1_HUMAN (Q8IUK5) Plexin domain-containing protein 1 precurso...	30	2.4
50	RL18_METAC (Q8TRS8) 50S ribosomal protein L18P	30	2.4
51	SRY_MUSSI (Q62565) Sex-determining region Y protein (Testis-dete...	30	3.2
52	FPRB_MYCLE (O33064) Probable ferredoxin/ferredoxin--NADP reducta...	30	3.2
53	SMI1_YARLI (Q6CDX0) KNR4/SMI1 homolog	29	4.1
54	PXDC1_MOUSE (Q91ZV7) Plexin domain-containing protein 1 precurso...	29	4.1
55	PALA_MAGGR (Q51NJ3) pH-response regulator protein palA/RIM20	29	4.1
56	ATG18_KLULA (Q6CS21) Autophagy-related protein 18	29	4.1
57	CTR3_RAT (O08812) Cationic amino acid transporter 3 (CAT-3) (Sol...	29	4.1
58	ITB6_HUMAN (P18564) Integrin beta-6 precursor	29	5.4
59	PI5PA_RAT (Q9JMC1) Phosphatidylinositol 4,5-bisphosphate 5-phosp...	29	5.4
60	SRY_MOUSE (Q05738) Sex-determining region Y protein (Testis-dete...	29	5.4
61	PCDH7_HUMAN (O60245) Protocadherin-7 precursor (Brain-heart prot...	28	7.1
62	JHD2A_MOUSE (Q6PCM1) JmjC domain-containing histone demethylatio...	28	7.1
63	YH17_YEAST (P38898) Hypothetical 17.1 kDa protein in PUR5 3'region	28	7.1
64	JHD2C_MOUSE (Q69ZK6) Probable JmjC domain-containing histone dem...	28	9.2
65	JHD2C_HUMAN (Q15652) Probable JmjC domain-containing histone dem...	28	9.2
66	EMS_DROME (P18488) Homeotic protein empty spiracles	28	9.2

>RL5A_ORYSA (P49625) 60S ribosomal protein L5-1|
          Length = 304

 Score =  222 bits (565), Expect = 3e-58
 Identities = 106/133 (79%), Positives = 115/133 (86%)
 Frame = +3

Query: 24  NYAAAYCTGLLLARRVLKSRDLDEEYEGNVEATGEDFSVEPADERRPFRALLDVGLIRTT 203
           NYAAAYCTGLLLARRVLK R LD+EYEGN+EATGED+ VEPADERRPFRALLDVGLIRTT
Sbjct: 95  NYAAAYCTGLLLARRVLKLRGLDQEYEGNIEATGEDYYVEPADERRPFRALLDVGLIRTT 154

Query: 204 TGNXVFXXXXXXXXXXXXIPHSDKRFAGFKKDEKSLDAEIHRKYIYGGHVADYMRSLADE 383
           TGN VF            IPHSDKRFAGFKKDEK LD++IHRKYIYGGHVADYMRS+A+E
Sbjct: 155 TGNRVFGALKGALDGGLDIPHSDKRFAGFKKDEKQLDSDIHRKYIYGGHVADYMRSMAEE 214

Query: 384 EPEKYQTHFSEYI 422
           EPEK+Q HFSEY+
Sbjct: 215 EPEKFQAHFSEYL 227

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>RL5B_ORYSA (Q8L4L4) 60S ribosomal protein L5-2|
          Length = 304

 Score =  220 bits (560), Expect = 1e-57
 Identities = 106/133 (79%), Positives = 114/133 (85%)
 Frame = +3

Query: 24  NYAAAYCTGLLLARRVLKSRDLDEEYEGNVEATGEDFSVEPADERRPFRALLDVGLIRTT 203
           NYAAAYCTGLLLARRVL  R LD+EYEGNVEATGED+ VEPADERRPFRALLDVGLIRTT
Sbjct: 95  NYAAAYCTGLLLARRVLTLRGLDQEYEGNVEATGEDYYVEPADERRPFRALLDVGLIRTT 154

Query: 204 TGNXVFXXXXXXXXXXXXIPHSDKRFAGFKKDEKSLDAEIHRKYIYGGHVADYMRSLADE 383
           TGN VF            IPHSDKRFAGFKKDEK LD++IHRKYIYGGHVADYMRS+A+E
Sbjct: 155 TGNRVFGALKGALDGGLDIPHSDKRFAGFKKDEKQLDSDIHRKYIYGGHVADYMRSMAEE 214

Query: 384 EPEKYQTHFSEYI 422
           EPEK+Q HFSEY+
Sbjct: 215 EPEKFQAHFSEYL 227

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>RL5_ARATH (P49227) 60S ribosomal protein L5|
          Length = 301

 Score =  205 bits (522), Expect = 3e-53
 Identities = 99/133 (74%), Positives = 108/133 (81%)
 Frame = +3

Query: 24  NYAAAYCTGLLLARRVLKSRDLDEEYEGNVEATGEDFSVEPADERRPFRALLDVGLIRTT 203
           NYAAAYCTGLLLARRVLK  ++D+EYEGNVEATGEDFSVEP D RRPFRALLDVGLIRTT
Sbjct: 94  NYAAAYCTGLLLARRVLKMLEMDDEYEGNVEATGEDFSVEPTDSRRPFRALLDVGLIRTT 153

Query: 204 TGNXVFXXXXXXXXXXXXIPHSDKRFAGFKKDEKSLDAEIHRKYIYGGHVADYMRSLADE 383
           TGN VF            IPHSDKRFAGF K+ K LDAEIHR YIYGGHV++YM+ L ++
Sbjct: 154 TGNRVFGALKGALDGGLDIPHSDKRFAGFHKENKQLDAEIHRNYIYGGHVSNYMKLLGED 213

Query: 384 EPEKYQTHFSEYI 422
           EPEK QTHFS YI
Sbjct: 214 EPEKLQTHFSAYI 226

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>RL5_CUCSA (Q6UNT2) 60S ribosomal protein L5|
          Length = 302

 Score =  204 bits (520), Expect = 6e-53
 Identities = 98/133 (73%), Positives = 110/133 (82%)
 Frame = +3

Query: 24  NYAAAYCTGLLLARRVLKSRDLDEEYEGNVEATGEDFSVEPADERRPFRALLDVGLIRTT 203
           NYAAAYCTGLLLARRVLK  ++D EYEGNVEATGED+SVEPAD RRPFRALLDVGLIRTT
Sbjct: 94  NYAAAYCTGLLLARRVLKMLEMDAEYEGNVEATGEDYSVEPADTRRPFRALLDVGLIRTT 153

Query: 204 TGNXVFXXXXXXXXXXXXIPHSDKRFAGFKKDEKSLDAEIHRKYIYGGHVADYMRSLADE 383
           TGN VF            IPHSDKRFAG+ K+ + LD E+HRKYI+GGHVA YMR+L ++
Sbjct: 154 TGNRVFGALKGALDGGLDIPHSDKRFAGYAKNGQQLDVEVHRKYIFGGHVAAYMRTLMED 213

Query: 384 EPEKYQTHFSEYI 422
           EPEKYQ+HFSEYI
Sbjct: 214 EPEKYQSHFSEYI 226

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>RL5_DUNSA (O22608) 60S ribosomal protein L5|
          Length = 271

 Score =  143 bits (361), Expect = 2e-34
 Identities = 68/134 (50%), Positives = 92/134 (68%), Gaps = 1/134 (0%)
 Frame = +3

Query: 24  NYAAAYCTGLLLARRVLKSRDLDEEYEGNVEATGEDFSVEPADER-RPFRALLDVGLIRT 200
           NY+AAYC GLL+ARR+L   +L + Y+G  E  GED++VEP ++  +PF  LLD GL RT
Sbjct: 94  NYSAAYCVGLLVARRILTKLNLADTYKGQEEPDGEDYNVEPVEDGPKPFYCLLDTGLKRT 153

Query: 201 TTGNXVFXXXXXXXXXXXXIPHSDKRFAGFKKDEKSLDAEIHRKYIYGGHVADYMRSLAD 380
           +TG+ VF            IPH++KRF G+   +K LD E+ +KYIYGGHVA+Y  ++ +
Sbjct: 154 STGSKVFAAMKGALDGGLDIPHNEKRFVGYA--DKKLDTEVLQKYIYGGHVAEYQETMQE 211

Query: 381 EEPEKYQTHFSEYI 422
           EEPEKYQ HFS Y+
Sbjct: 212 EEPEKYQAHFSSYV 225

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>RL5_NEUCR (O59953) 60S ribosomal protein L5 (CPR4)|
          Length = 301

 Score =  140 bits (352), Expect = 2e-33
 Identities = 72/139 (51%), Positives = 93/139 (66%), Gaps = 4/139 (2%)
 Frame = +3

Query: 24  NYAAAYCTGLLLARRVLKSRDLDEEYEGNVEATGEDFSVEPAD----ERRPFRALLDVGL 191
           N+AAAY TGLLLARRVLK   LDE ++G  EA GE    E A+    ERRPF+A LDVGL
Sbjct: 94  NWAAAYATGLLLARRVLKKLGLDETFKGVEEADGEYKLTEAAETDDGERRPFKAFLDVGL 153

Query: 192 IRTTTGNXVFXXXXXXXXXXXXIPHSDKRFAGFKKDEKSLDAEIHRKYIYGGHVADYMRS 371
            RT+TG  VF            IPHS+ RF G+  + + LDAE  +KYI+GGHVA+YM +
Sbjct: 154 ARTSTGARVFGAMKGASDGGIFIPHSENRFPGYDMESEELDAETLKKYIFGGHVAEYMET 213

Query: 372 LADEEPEKYQTHFSEYIXE 428
           LAD++ E+Y++ F+ YI +
Sbjct: 214 LADDDEERYKSQFNRYIED 232

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>RL5_CHICK (P22451) 60S ribosomal protein L5|
          Length = 296

 Score =  139 bits (351), Expect = 2e-33
 Identities = 70/134 (52%), Positives = 88/134 (65%), Gaps = 1/134 (0%)
 Frame = +3

Query: 24  NYAAAYCTGLLLARRVLKSRDLDEEYEGNVEATGEDFSVEPADERR-PFRALLDVGLIRT 200
           NYAAAYCTGLLLARR+L    LD+ YEG VE TG++++VE  D +   F   LD GL RT
Sbjct: 93  NYAAAYCTGLLLARRLLNKFGLDKIYEGQVEVTGDEYNVESVDGKPGAFTCYLDAGLART 152

Query: 201 TTGNXVFXXXXXXXXXXXXIPHSDKRFAGFKKDEKSLDAEIHRKYIYGGHVADYMRSLAD 380
           TTGN VF            IPHS KRF G+  + K  +AE+HRK+I G +VADYMR L +
Sbjct: 153 TTGNKVFGALKGAVDGGLSIPHSTKRFPGYDSESKEFNAEVHRKHIMGQNVADYMRYLME 212

Query: 381 EEPEKYQTHFSEYI 422
           E+ + Y+  FS+YI
Sbjct: 213 EDEDAYKKQFSQYI 226

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>RL5_HELAN (O65353) 60S ribosomal protein L5|
          Length = 297

 Score =  139 bits (350), Expect = 3e-33
 Identities = 69/134 (51%), Positives = 91/134 (67%), Gaps = 1/134 (0%)
 Frame = +3

Query: 24  NYAAAYCTGLLLARRVLKSRDLDEEYEGNVEATGEDFSVEPADERR-PFRALLDVGLIRT 200
           NYAAAYCTGLLLAR++L    LD+ Y G+ E TGE+F+V+P ++    FR  LDVGL+RT
Sbjct: 94  NYAAAYCTGLLLARKLLSQLGLDKLYIGSTEVTGEEFNVKPVEDGPGAFRCYLDVGLMRT 153

Query: 201 TTGNXVFXXXXXXXXXXXXIPHSDKRFAGFKKDEKSLDAEIHRKYIYGGHVADYMRSLAD 380
           TTG  VF            I HS KRF GF  + K  +A++HR++I+G HVA+YMR LA+
Sbjct: 154 TTGARVFGAMKGAVDGGLNILHSTKRFPGFDSESKEFNADVHRQHIFGQHVAEYMRQLAE 213

Query: 381 EEPEKYQTHFSEYI 422
           E+ E Y+  FS+YI
Sbjct: 214 EDDEAYKRQFSQYI 227

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>RL5_CAEEL (P49405) 60S ribosomal protein L5|
          Length = 293

 Score =  139 bits (349), Expect = 4e-33
 Identities = 66/133 (49%), Positives = 90/133 (67%)
 Frame = +3

Query: 24  NYAAAYCTGLLLARRVLKSRDLDEEYEGNVEATGEDFSVEPADERRPFRALLDVGLIRTT 203
           NYAAAY TGLLLARR LK+  LD  Y+G+ E TGED++VE   +R PF+A+LD+GL RTT
Sbjct: 94  NYAAAYATGLLLARRHLKTIGLDSTYKGHEELTGEDYNVEEEGDRAPFKAVLDIGLARTT 153

Query: 204 TGNXVFXXXXXXXXXXXXIPHSDKRFAGFKKDEKSLDAEIHRKYIYGGHVADYMRSLADE 383
           TG+ +F            +PHS+ RF GF ++ K  +AE HR  I G HVADYM  L +E
Sbjct: 154 TGSKIFAVMKGVADGGINVPHSESRFFGFDQESKEYNAEAHRDRILGKHVADYMTYLKEE 213

Query: 384 EPEKYQTHFSEYI 422
           + ++Y+  FS+++
Sbjct: 214 DEDRYKRQFSKFL 226

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>RL5_ANOGA (O44248) 60S ribosomal protein L5|
          Length = 327

 Score =  138 bits (348), Expect = 5e-33
 Identities = 70/134 (52%), Positives = 90/134 (67%), Gaps = 1/134 (0%)
 Frame = +3

Query: 24  NYAAAYCTGLLLARRVLKSRDLDEEYEGNVEATGEDFSVEPADER-RPFRALLDVGLIRT 200
           NYAAAYCTGLL+ARR+L+   LD  Y G  + TGE++ VEP DE    FR  LDVGL RT
Sbjct: 94  NYAAAYCTGLLVARRILQKLRLDTLYAGCTDVTGEEYLVEPVDEGPAAFRCYLDVGLART 153

Query: 201 TTGNXVFXXXXXXXXXXXXIPHSDKRFAGFKKDEKSLDAEIHRKYIYGGHVADYMRSLAD 380
           TTG+ VF            IPHS KRF G+  + KS +AE+HR +I+G HVA+YMR+L +
Sbjct: 154 TTGSRVFGAMKGAVDGGLNIPHSVKRFPGYSAENKSFNAEMHRDHIFGLHVANYMRTLEE 213

Query: 381 EEPEKYQTHFSEYI 422
           E+ E ++  FS+YI
Sbjct: 214 EDEEAFKRQFSKYI 227

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>RL5_MACFA (Q4R5M0) 60S ribosomal protein L5|
          Length = 296

 Score =  138 bits (347), Expect = 6e-33
 Identities = 69/134 (51%), Positives = 88/134 (65%), Gaps = 1/134 (0%)
 Frame = +3

Query: 24  NYAAAYCTGLLLARRVLKSRDLDEEYEGNVEATGEDFSVEPAD-ERRPFRALLDVGLIRT 200
           NYAAAYCTGLLLARR+L    +D+ YEG VE TG++++VE  D +   F   LD GL RT
Sbjct: 93  NYAAAYCTGLLLARRLLNRFGMDKIYEGQVEVTGDEYNVESIDGQPGAFTCYLDAGLART 152

Query: 201 TTGNXVFXXXXXXXXXXXXIPHSDKRFAGFKKDEKSLDAEIHRKYIYGGHVADYMRSLAD 380
           TTGN VF            IPHS KRF G+  + K  +AE+HRK+I G +VADYMR L +
Sbjct: 153 TTGNKVFGALKGAVDGGLSIPHSTKRFPGYDSESKEFNAEVHRKHIMGQNVADYMRYLME 212

Query: 381 EEPEKYQTHFSEYI 422
           E+ + Y+  FS+YI
Sbjct: 213 EDEDAYKKQFSQYI 226

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>RL5_HUMAN (P46777) 60S ribosomal protein L5|
          Length = 296

 Score =  138 bits (347), Expect = 6e-33
 Identities = 69/134 (51%), Positives = 88/134 (65%), Gaps = 1/134 (0%)
 Frame = +3

Query: 24  NYAAAYCTGLLLARRVLKSRDLDEEYEGNVEATGEDFSVEPAD-ERRPFRALLDVGLIRT 200
           NYAAAYCTGLLLARR+L    +D+ YEG VE TG++++VE  D +   F   LD GL RT
Sbjct: 93  NYAAAYCTGLLLARRLLNRFGMDKIYEGQVEVTGDEYNVESIDGQPGAFTCYLDAGLART 152

Query: 201 TTGNXVFXXXXXXXXXXXXIPHSDKRFAGFKKDEKSLDAEIHRKYIYGGHVADYMRSLAD 380
           TTGN VF            IPHS KRF G+  + K  +AE+HRK+I G +VADYMR L +
Sbjct: 153 TTGNKVFGALKGAVDGGLSIPHSTKRFPGYDSESKEFNAEVHRKHIMGQNVADYMRYLME 212

Query: 381 EEPEKYQTHFSEYI 422
           E+ + Y+  FS+YI
Sbjct: 213 EDEDAYKKQFSQYI 226

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>RL5B_XENLA (P15126) 60S ribosomal protein L5-B|
          Length = 295

 Score =  136 bits (343), Expect = 2e-32
 Identities = 67/134 (50%), Positives = 87/134 (64%), Gaps = 1/134 (0%)
 Frame = +3

Query: 24  NYAAAYCTGLLLARRVLKSRDLDEEYEGNVEATGEDFSVEPAD-ERRPFRALLDVGLIRT 200
           NYAAAYCTGLLLARR+L    LD+ YEG VE TG++++VE  D E   F   LD GL RT
Sbjct: 93  NYAAAYCTGLLLARRLLNKFGLDKVYEGQVEVTGDEYNVESVDGEPGAFTCYLDAGLTRT 152

Query: 201 TTGNXVFXXXXXXXXXXXXIPHSDKRFAGFKKDEKSLDAEIHRKYIYGGHVADYMRSLAD 380
           TTGN VF            IPHS KRF G+  + K  + E+HRK+I+  ++A+YMR L +
Sbjct: 153 TTGNKVFGALKGAVDGGLSIPHSTKRFPGYDSESKEFNPEVHRKHIFAQNIAEYMRLLME 212

Query: 381 EEPEKYQTHFSEYI 422
           E+ + Y+  FS+YI
Sbjct: 213 EDEDAYKKQFSQYI 226

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>RL5A_XENLA (P15125) 60S ribosomal protein L5-A|
          Length = 295

 Score =  136 bits (343), Expect = 2e-32
 Identities = 68/134 (50%), Positives = 87/134 (64%), Gaps = 1/134 (0%)
 Frame = +3

Query: 24  NYAAAYCTGLLLARRVLKSRDLDEEYEGNVEATGEDFSVEPAD-ERRPFRALLDVGLIRT 200
           NYAAAYCTGLLLARR+L    LD+ YEG VE TG++++VE  D E   F   LD GL RT
Sbjct: 93  NYAAAYCTGLLLARRLLNKFGLDKVYEGQVEVTGDEYNVESIDGEPGAFTCYLDAGLTRT 152

Query: 201 TTGNXVFXXXXXXXXXXXXIPHSDKRFAGFKKDEKSLDAEIHRKYIYGGHVADYMRSLAD 380
           TTGN VF            IPHS KRF G+  + K  + E+HRK+I+  +VA+YMR L +
Sbjct: 153 TTGNKVFGALKGAVDGGLSIPHSTKRFPGYDSESKEFNPEVHRKHIFAQNVAEYMRLLME 212

Query: 381 EEPEKYQTHFSEYI 422
           E+ + Y+  FS+YI
Sbjct: 213 EDEDAYKKQFSQYI 226

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>RL5_STYCL (Q26481) 60S ribosomal protein L5|
          Length = 294

 Score =  136 bits (343), Expect = 2e-32
 Identities = 68/134 (50%), Positives = 86/134 (64%), Gaps = 1/134 (0%)
 Frame = +3

Query: 24  NYAAAYCTGLLLARRVLKSRDLDEEYEGNVEATGEDFSVEPADERR-PFRALLDVGLIRT 200
           NYAAAYCTGLLL+RR+L    LDE YEG  E  G++F VE  D +   FRA LDVGL RT
Sbjct: 93  NYAAAYCTGLLLSRRLLNKFGLDEIYEGQTEIDGDEFYVEDVDGKPGAFRAFLDVGLART 152

Query: 201 TTGNXVFXXXXXXXXXXXXIPHSDKRFAGFKKDEKSLDAEIHRKYIYGGHVADYMRSLAD 380
           TTG  VF            IPHS KRF G+  +     AE+HR +I+GGHV++YM+ L +
Sbjct: 153 TTGAKVFGAMKGAADGGLDIPHSTKRFPGYDDESGDFSAEVHRSHIFGGHVSNYMKELEE 212

Query: 381 EEPEKYQTHFSEYI 422
           E+ E ++  FS+YI
Sbjct: 213 EDEEAFKRQFSQYI 226

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>RL5_RAT (P09895) 60S ribosomal protein L5|
          Length = 296

 Score =  136 bits (342), Expect = 2e-32
 Identities = 68/134 (50%), Positives = 87/134 (64%), Gaps = 1/134 (0%)
 Frame = +3

Query: 24  NYAAAYCTGLLLARRVLKSRDLDEEYEGNVEATGEDFSVEPAD-ERRPFRALLDVGLIRT 200
           NYAAAYCTGLLLARR+L    +D+ YEG VE  G++++VE  D +   F   LD GL RT
Sbjct: 93  NYAAAYCTGLLLARRLLNRFGMDKIYEGQVEVNGDEYNVESIDGQPGAFTCYLDAGLART 152

Query: 201 TTGNXVFXXXXXXXXXXXXIPHSDKRFAGFKKDEKSLDAEIHRKYIYGGHVADYMRSLAD 380
           TTGN VF            IPHS KRF G+  + K  +AE+HRK+I G +VADYMR L +
Sbjct: 153 TTGNKVFGALKGAVDGGLSIPHSTKRFPGYDSESKEFNAEVHRKHIMGQNVADYMRYLME 212

Query: 381 EEPEKYQTHFSEYI 422
           E+ + Y+  FS+YI
Sbjct: 213 EDEDAYKKQFSQYI 226

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>RL5_MOUSE (P47962) 60S ribosomal protein L5|
          Length = 296

 Score =  134 bits (338), Expect = 7e-32
 Identities = 68/134 (50%), Positives = 86/134 (64%), Gaps = 1/134 (0%)
 Frame = +3

Query: 24  NYAAAYCTGLLLARRVLKSRDLDEEYEGNVEATGEDFSVEPAD-ERRPFRALLDVGLIRT 200
           NYAAAYCTGLLLARR+L    +D+ YEG VE  G +++VE  D +   F   LD GL RT
Sbjct: 93  NYAAAYCTGLLLARRLLNRFGMDKIYEGQVEVNGGEYNVESIDGQPGAFTCYLDAGLART 152

Query: 201 TTGNXVFXXXXXXXXXXXXIPHSDKRFAGFKKDEKSLDAEIHRKYIYGGHVADYMRSLAD 380
           TTGN VF            IPHS KRF G+  + K  +AE+HRK+I G +VADYMR L +
Sbjct: 153 TTGNKVFGALKGAVDGGLSIPHSTKRFPGYDSESKEFNAEVHRKHIMGQNVADYMRYLME 212

Query: 381 EEPEKYQTHFSEYI 422
           E+ + Y+  FS+YI
Sbjct: 213 EDEDAYKKQFSQYI 226

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>RL5_BOMMO (O76190) 60S ribosomal protein L5|
          Length = 299

 Score =  130 bits (328), Expect = 1e-30
 Identities = 65/134 (48%), Positives = 86/134 (64%), Gaps = 1/134 (0%)
 Frame = +3

Query: 24  NYAAAYCTGLLLARRVLKSRDLDEEYEGNVEATGEDFSVEPADERR-PFRALLDVGLIRT 200
           NYAAAY TGLLLARR+L+   LD  Y G  + TG++++VEP D     FR  LDVGL RT
Sbjct: 94  NYAAAYSTGLLLARRLLQRLGLDTLYTGTTDVTGDEYNVEPVDNGPGAFRCYLDVGLART 153

Query: 201 TTGNXVFXXXXXXXXXXXXIPHSDKRFAGFKKDEKSLDAEIHRKYIYGGHVADYMRSLAD 380
           TTG  VF            +PHS KRF G+  + K  +AE+HR +I+G HVA+YMRSL  
Sbjct: 154 TTGRRVFGAMKGAVDGGLNVPHSIKRFPGYDAESKKFNAEVHRAHIFGLHVAEYMRSLEQ 213

Query: 381 EEPEKYQTHFSEYI 422
           ++ + ++  FS+YI
Sbjct: 214 DDEDSFKRQFSKYI 227

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>RL5B_SCHPO (O74306) 60S ribosomal protein L5-B|
          Length = 294

 Score =  121 bits (303), Expect = 8e-28
 Identities = 67/137 (48%), Positives = 82/137 (59%), Gaps = 2/137 (1%)
 Frame = +3

Query: 24  NYAAAYCTGLLLARRVLKSRDLDEEYEGNVEATGEDFSVEPA--DERRPFRALLDVGLIR 197
           N+ AAY TGLL+ARR L    L ++YEG  E  GE F +  A  D  RPF+  LDVGL R
Sbjct: 94  NWTAAYATGLLVARRALAKVGLADKYEGVTEPEGE-FELTEAIEDGPRPFKVFLDVGLKR 152

Query: 198 TTTGNXVFXXXXXXXXXXXXIPHSDKRFAGFKKDEKSLDAEIHRKYIYGGHVADYMRSLA 377
           T+TG+ VF            IPHS  RF GF  + + LD E  RKYIYGGHVA+YM  L 
Sbjct: 153 TSTGSRVFGAMKGASDGGLFIPHSPNRFPGFDIETEELDDETLRKYIYGGHVAEYMEMLI 212

Query: 378 DEEPEKYQTHFSEYIXE 428
           D++ E+YQ  FS  I +
Sbjct: 213 DDDEERYQKQFSGLIAD 229

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>RL5A_SCHPO (P52822) 60S ribosomal protein L5-A|
          Length = 294

 Score =  121 bits (303), Expect = 8e-28
 Identities = 67/137 (48%), Positives = 82/137 (59%), Gaps = 2/137 (1%)
 Frame = +3

Query: 24  NYAAAYCTGLLLARRVLKSRDLDEEYEGNVEATGEDFSVEPA--DERRPFRALLDVGLIR 197
           N+ AAY TGLL+ARR L    L ++YEG  E  GE F +  A  D  RPF+  LDVGL R
Sbjct: 94  NWTAAYATGLLVARRALAKVGLADKYEGVTEPEGE-FELTEAIEDGPRPFKVFLDVGLKR 152

Query: 198 TTTGNXVFXXXXXXXXXXXXIPHSDKRFAGFKKDEKSLDAEIHRKYIYGGHVADYMRSLA 377
           T+TG+ VF            IPHS  RF GF  + + LD E  RKYIYGGHVA+YM  L 
Sbjct: 153 TSTGSRVFGAMKGASDGGLFIPHSPNRFPGFDIETEELDDETLRKYIYGGHVAEYMEMLI 212

Query: 378 DEEPEKYQTHFSEYIXE 428
           D++ E+YQ  FS  I +
Sbjct: 213 DDDEERYQKQFSGLIAD 229

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>RL5_YEAST (P26321) 60S ribosomal protein L5 (L1) (YL3) (Ribosomal 5S|
           RNA-binding protein)
          Length = 296

 Score =  118 bits (296), Expect = 5e-27
 Identities = 59/136 (43%), Positives = 82/136 (60%), Gaps = 1/136 (0%)
 Frame = +3

Query: 24  NYAAAYCTGLLLARRVLKSRDLDEEYEGNVEATGE-DFSVEPADERRPFRALLDVGLIRT 200
           N+AAAY TGLL+ARR L+   LDE Y+G  E  GE + +    D  RPF+  LD+GL RT
Sbjct: 93  NWAAAYATGLLIARRTLQRLGLDETYKGVEEVEGEYELTEAVEDGPRPFKVFLDIGLQRT 152

Query: 201 TTGNXVFXXXXXXXXXXXXIPHSDKRFAGFKKDEKSLDAEIHRKYIYGGHVADYMRSLAD 380
           TTG  VF            +PHS+ RF G+  + + +D E+ R YI+GGHV+ YM  LAD
Sbjct: 153 TTGARVFGALKGASDGGLYVPHSENRFPGWDFETEEIDPELLRSYIFGGHVSQYMEELAD 212

Query: 381 EEPEKYQTHFSEYIXE 428
           ++ E++   F  Y+ +
Sbjct: 213 DDEERFSELFKGYLAD 228

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>RL5_SOLME (P93779) 60S ribosomal protein L5 (Fragment)|
          Length = 121

 Score = 74.3 bits (181), Expect = 1e-13
 Identities = 32/43 (74%), Positives = 36/43 (83%)
 Frame = +3

Query: 294 KDEKSLDAEIHRKYIYGGHVADYMRSLADEEPEKYQTHFSEYI 422
           KD K LDAE+HRKYIYGGHVA YM  L ++EPEKYQ+HFS YI
Sbjct: 3   KDSKQLDAEVHRKYIYGGHVAAYMNILMEDEPEKYQSHFSSYI 45

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>RL18_PYRAE (Q8ZVV7) 50S ribosomal protein L18P|
          Length = 205

 Score = 46.6 bits (109), Expect = 3e-05
 Identities = 31/92 (33%), Positives = 39/92 (42%)
 Frame = +3

Query: 147 ADERRPFRALLDVGLIRTTTGNXVFXXXXXXXXXXXXIPHSDKRFAGFKKDEKSLDAEIH 326
           A  RR   A+LD+GL R   G  VF            IPH ++       DE        
Sbjct: 93  ARARRVEEAILDIGLHRPAPGARVFAVLKGALDAGLKIPHGEEVLP----DEDR------ 142

Query: 327 RKYIYGGHVADYMRSLADEEPEKYQTHFSEYI 422
              I G HVA+Y   L +E PE Y+  FS Y+
Sbjct: 143 ---IKGKHVAEYAEKLKEENPEAYKARFSRYL 171

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>RL18_METKA (Q8TZA5) 50S ribosomal protein L18P|
          Length = 202

 Score = 46.2 bits (108), Expect = 3e-05
 Identities = 29/90 (32%), Positives = 43/90 (47%)
 Frame = +3

Query: 153 ERRPFRALLDVGLIRTTTGNXVFXXXXXXXXXXXXIPHSDKRFAGFKKDEKSLDAEIHRK 332
           ER   RA++D+GL R   G+ VF            IPH           E+ L  E    
Sbjct: 99  ERGIERAVIDIGLHRPVRGSRVFAMLKGALDAGMDIPHG----------EEVLPPEDR-- 146

Query: 333 YIYGGHVADYMRSLADEEPEKYQTHFSEYI 422
            I G H+A+  R + +E+PE+Y+  FS+Y+
Sbjct: 147 -IRGEHIANLARQIKEEDPEEYERRFSKYL 175

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>RL18_METMP (Q6LXD4) 50S ribosomal protein L18P|
          Length = 193

 Score = 45.8 bits (107), Expect = 4e-05
 Identities = 41/133 (30%), Positives = 54/133 (40%)
 Frame = +3

Query: 24  NYAAAYCTGLLLARRVLKSRDLDEEYEGNVEATGEDFSVEPADERRPFRALLDVGLIRTT 203
           N  AAY TGLLL  + +K  D+ E                         A+LD GL R T
Sbjct: 78  NLPAAYLTGLLLGAKAVK-EDVKE-------------------------AVLDKGLHRAT 111

Query: 204 TGNXVFXXXXXXXXXXXXIPHSDKRFAGFKKDEKSLDAEIHRKYIYGGHVADYMRSLADE 383
            G  +F            IPH DK  A    DE+ L+         G HV +Y  SL  E
Sbjct: 112 KGAAIFAVLKGALDAGMDIPHGDKIIA----DEERLN---------GTHVKNYAESL-KE 157

Query: 384 EPEKYQTHFSEYI 422
           + + Y+  FS+Y+
Sbjct: 158 DADAYKKQFSKYL 170

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>RL18_METJA (P54044) 50S ribosomal protein L18P|
          Length = 195

 Score = 45.1 bits (105), Expect = 7e-05
 Identities = 36/133 (27%), Positives = 54/133 (40%)
 Frame = +3

Query: 24  NYAAAYCTGLLLARRVLKSRDLDEEYEGNVEATGEDFSVEPADERRPFRALLDVGLIRTT 203
           N  +AY TG LL ++ L         +G  EA                  +LD+GL R T
Sbjct: 78  NLPSAYLTGYLLGKKALA--------KGYTEA------------------VLDIGLHRAT 111

Query: 204 TGNXVFXXXXXXXXXXXXIPHSDKRFAGFKKDEKSLDAEIHRKYIYGGHVADYMRSLADE 383
            GN +F            IPH           E+ L +E   + I G H+  Y   L ++
Sbjct: 112 KGNAIFAILKGALDAGMEIPHG----------EEILPSE---ERIRGEHIKAYAEMLKEQ 158

Query: 384 EPEKYQTHFSEYI 422
           + E+Y+  FS+Y+
Sbjct: 159 DEERYKKQFSKYL 171

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>RL5_PIG (Q95276) 60S ribosomal protein L5 (Fragment)|
          Length = 124

 Score = 42.0 bits (97), Expect = 6e-04
 Identities = 20/31 (64%), Positives = 23/31 (74%)
 Frame = +3

Query: 24  NYAAAYCTGLLLARRVLKSRDLDEEYEGNVE 116
           NYAAAYCTGLLLARR+L    + + Y G VE
Sbjct: 93  NYAAAYCTGLLLARRLLNRFGMXKIYGGQVE 123

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>RL18_AERPE (Q9YF94) 50S ribosomal protein L18P|
          Length = 214

 Score = 41.6 bits (96), Expect = 8e-04
 Identities = 36/133 (27%), Positives = 49/133 (36%)
 Frame = +3

Query: 24  NYAAAYCTGLLLARRVLKSRDLDEEYEGNVEATGEDFSVEPADERRPFRALLDVGLIRTT 203
           N  AAY TG L   R L                          E+    A+LDVGL +  
Sbjct: 79  NTCAAYLTGYLAGLRAL--------------------------EKGVREAVLDVGLHKPV 112

Query: 204 TGNXVFXXXXXXXXXXXXIPHSDKRFAGFKKDEKSLDAEIHRKYIYGGHVADYMRSLADE 383
            G+ VF            IPHS++   G   DE+          +   H+A +  +L +E
Sbjct: 113 KGSRVFAALKGALDAGVEIPHSEEILPG---DER----------VRCEHIAQWAEALKEE 159

Query: 384 EPEKYQTHFSEYI 422
             E YQ  FS Y+
Sbjct: 160 NAELYQRQFSRYL 172

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>RL18_PYRKO (Q5JJG7) 50S ribosomal protein L18P|
          Length = 201

 Score = 41.2 bits (95), Expect = 0.001
 Identities = 24/84 (28%), Positives = 41/84 (48%)
 Frame = +3

Query: 171 ALLDVGLIRTTTGNXVFXXXXXXXXXXXXIPHSDKRFAGFKKDEKSLDAEIHRKYIYGGH 350
           A+LD+GL   T G+ +F            +PHS++ +            E +R  I G H
Sbjct: 102 AILDIGLHPPTRGSSIFAVLKGAVDAGLNVPHSEEIYP-----------EDYR--INGEH 148

Query: 351 VADYMRSLADEEPEKYQTHFSEYI 422
           +A+Y ++L +E+   Y+  FS Y+
Sbjct: 149 IANYAKALKEEDEALYRKQFSGYL 172

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>RL18_PYRAB (Q9V1V4) 50S ribosomal protein L18P|
          Length = 203

 Score = 41.2 bits (95), Expect = 0.001
 Identities = 25/84 (29%), Positives = 39/84 (46%)
 Frame = +3

Query: 171 ALLDVGLIRTTTGNXVFXXXXXXXXXXXXIPHSDKRFAGFKKDEKSLDAEIHRKYIYGGH 350
           A+LD+GL     G+ VF            +PHS + F            E +R  I G H
Sbjct: 102 AILDIGLHPPVRGSSVFAVLKGAVDAGLNVPHSPEIFP-----------EDYR--IRGEH 148

Query: 351 VADYMRSLADEEPEKYQTHFSEYI 422
           +A+Y R L +++ EK++  F  Y+
Sbjct: 149 IAEYARMLKEQDEEKFRRQFGGYL 172

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>RL18_PYRFU (Q9HH80) 50S ribosomal protein L18P (PfL18)|
          Length = 203

 Score = 39.7 bits (91), Expect = 0.003
 Identities = 24/84 (28%), Positives = 38/84 (45%)
 Frame = +3

Query: 171 ALLDVGLIRTTTGNXVFXXXXXXXXXXXXIPHSDKRFAGFKKDEKSLDAEIHRKYIYGGH 350
           A+LD+GL     G+ VF            +PHS + F     DE           I G H
Sbjct: 102 AILDIGLHPPVRGSSVFAVLKGAVDAGLNVPHSPEIFP----DEYR---------IRGEH 148

Query: 351 VADYMRSLADEEPEKYQTHFSEYI 422
           +A+Y + L +++ EK++  F  Y+
Sbjct: 149 IAEYAKMLKEQDEEKFRRQFGGYL 172

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>RL18_NANEQ (Q74MJ4) 50S ribosomal protein L18P|
          Length = 195

 Score = 39.7 bits (91), Expect = 0.003
 Identities = 27/86 (31%), Positives = 40/86 (46%)
 Frame = +3

Query: 171 ALLDVGLIRTTTGNXVFXXXXXXXXXXXXIPHSDKRFAGFKKDEKSLDAEIHRKYIYGGH 350
           A+LD+G  ++T GN ++            IPHS          E  L +E     I G H
Sbjct: 101 AVLDIGRYKSTKGNALYAVLKGALDAGLNIPHS----------ETILPSE---DRIRGEH 147

Query: 351 VADYMRSLADEEPEKYQTHFSEYIXE 428
           +A+Y + L + E E Y+  FS Y+ E
Sbjct: 148 IANYAKMLKENE-ELYKKQFSRYLKE 172

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>RL18_SULTO (Q975J9) 50S ribosomal protein L18P|
          Length = 196

 Score = 38.9 bits (89), Expect = 0.005
 Identities = 35/133 (26%), Positives = 48/133 (36%)
 Frame = +3

Query: 24  NYAAAYCTGLLLARRVLKSRDLDEEYEGNVEATGEDFSVEPADERRPFRALLDVGLIRTT 203
           N  AAY TG LL  R LK+   +                          A+ D+GL    
Sbjct: 79  NTPAAYLTGYLLGVRALKAGIKE--------------------------AVADIGLFVPV 112

Query: 204 TGNXVFXXXXXXXXXXXXIPHSDKRFAGFKKDEKSLDAEIHRKYIYGGHVADYMRSLADE 383
            G+ +F            IP  D    G K+D            I G H+A Y + L  E
Sbjct: 113 KGSRIFTAIKGAIDAGLSIPVGD---LGIKEDR-----------IKGVHIASYAQKLEAE 158

Query: 384 EPEKYQTHFSEYI 422
            PE ++  FS+Y+
Sbjct: 159 NPELFKRLFSKYL 171

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>RL18_PYRHO (O59438) 50S ribosomal protein L18P|
          Length = 203

 Score = 38.5 bits (88), Expect = 0.007
 Identities = 22/84 (26%), Positives = 39/84 (46%)
 Frame = +3

Query: 171 ALLDVGLIRTTTGNXVFXXXXXXXXXXXXIPHSDKRFAGFKKDEKSLDAEIHRKYIYGGH 350
           A+LD+GL     G+ +F            +PHS + F            E +R  I G H
Sbjct: 102 AILDIGLHPPVRGSSIFAVLKGAIDAGLNVPHSPEIFP-----------EDYR--IRGEH 148

Query: 351 VADYMRSLADEEPEKYQTHFSEYI 422
           +A+Y R L +++ ++++  F  Y+
Sbjct: 149 IAEYARMLKEQDEDRFRRQFGGYL 172

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>RL18_METVA (P14033) 50S ribosomal protein L18P|
          Length = 195

 Score = 37.7 bits (86), Expect = 0.012
 Identities = 37/133 (27%), Positives = 53/133 (39%)
 Frame = +3

Query: 24  NYAAAYCTGLLLARRVLKSRDLDEEYEGNVEATGEDFSVEPADERRPFRALLDVGLIRTT 203
           N  AAY TGLLL ++ ++        EG  E                  A+LD GL R T
Sbjct: 80  NLPAAYLTGLLLGKKAVE--------EGLEE------------------AILDKGLHRAT 113

Query: 204 TGNXVFXXXXXXXXXXXXIPHSDKRFAGFKKDEKSLDAEIHRKYIYGGHVADYMRSLADE 383
            G  +F            IP  ++  A    DE+ L+         G H+  Y   L ++
Sbjct: 114 KGAAIFAVLKGALDAGMDIPCGEEIIA----DEERLN---------GTHIKQYAELLKED 160

Query: 384 EPEKYQTHFSEYI 422
           E E Y+  FS+Y+
Sbjct: 161 E-EAYKKQFSKYL 172

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>RL18_METTH (O26130) 50S ribosomal protein L18P|
          Length = 192

 Score = 37.0 bits (84), Expect = 0.020
 Identities = 38/133 (28%), Positives = 49/133 (36%)
 Frame = +3

Query: 24  NYAAAYCTGLLLARRVLKSRDLDEEYEGNVEATGEDFSVEPADERRPFRALLDVGLIRTT 203
           N AAAY TG L  +R LK        EG  EA                  +LD+GL    
Sbjct: 78  NTAAAYLTGYLCGKRALK--------EGIEEA------------------VLDIGLRPAI 111

Query: 204 TGNXVFXXXXXXXXXXXXIPHSDKRFAGFKKDEKSLDAEIHRKYIYGGHVADYMRSLADE 383
            G+ VF            +PH +        DE           I G H+ +Y  SL +E
Sbjct: 112 RGSKVFAALKGAVDAGLNVPHGE----SVLPDESR---------IRGEHIMEYAESLDEE 158

Query: 384 EPEKYQTHFSEYI 422
           E  K    FS+Y+
Sbjct: 159 ELRK---RFSKYL 168

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>FOXJ3_MOUSE (Q8BUR3) Forkhead box protein J3|
          Length = 623

 Score = 36.6 bits (83), Expect = 0.026
 Identities = 34/123 (27%), Positives = 44/123 (35%), Gaps = 15/123 (12%)
 Frame = -2

Query: 369 TSCSQQHALHRCTCGESQHPETSRPS*NQQISC------------HCGECPDHRPKLP*V 226
           TSCS QH+            ++S P+ +  +S             H    P   P  P  
Sbjct: 328 TSCSYQHSPSSTVTSHPHSNQSSLPNNHSGLSATGSNSVAQVSLSHPQMHPQPSPHTP-- 385

Query: 225 HQTXGFQS*S**DQHPRAHGKASSHQQ---AQQRSPHQWPQHCLHTPHPDHGT*AHDEPK 55
           H+  G        QHP  H +  S  Q   +Q   PHQ   H  H P+  H T AH  P 
Sbjct: 386 HRPHGLPQHPQRPQHPAPHPQQHSQLQPPHSQHPPPHQ---HIQHHPNHQHQTLAHQPPP 442

Query: 54  ADQ 46
             Q
Sbjct: 443 PPQ 445

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>RL18_HALSA (P50562) 50S ribosomal protein L18P (HCuL18) (HSal18) (HHal18)|
           (HL13)
          Length = 182

 Score = 36.6 bits (83), Expect = 0.026
 Identities = 35/137 (25%), Positives = 47/137 (34%), Gaps = 6/137 (4%)
 Frame = +3

Query: 24  NYAAAYCTGLLLARRVLKSRDLDEEYEGNVEATGEDFSVEPADERRPFRALLDVGLIRTT 203
           N  AAY TGLL  +R +                  D  VE         A+LD+GL   T
Sbjct: 77  NLPAAYLTGLLAGQRAV------------------DAGVE--------EAVLDIGLNTAT 110

Query: 204 TGNXVFXXXXXXXXXXXXIPHSDKRFAGFKKDEKSLDAEIHRKYIYGGHVADYMRSL--- 374
            G+ VF            +PH+D   A + +               G H+A+Y  SL   
Sbjct: 111 PGSKVFAIQEGAIDAGLDVPHNDSVLADWSRTR-------------GEHIAEYAESLDEP 157

Query: 375 ---ADEEPEKYQTHFSE 416
               D +      HF E
Sbjct: 158 LYSGDFDATALPAHFDE 174

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>FOXJ3_HUMAN (Q9UPW0) Forkhead box protein J3|
          Length = 622

 Score = 35.8 bits (81), Expect = 0.044
 Identities = 38/122 (31%), Positives = 47/122 (38%), Gaps = 9/122 (7%)
 Frame = -2

Query: 384 PHLLATSCSQQHALHRCTCGESQHPETS--RPS*NQQISCHCGECPDHRPK-LP*VHQTX 214
           PH   +S S  H     T G +   + S   P  + Q S H    P HRP  LP      
Sbjct: 342 PHSNQSSLSNSHGSGLNTTGSNSVAQVSLSHPQMHPQPSPH----PPHRPHGLP------ 391

Query: 213 GFQS*S**DQHPRAHGKASSH--QQAQQRSPH-QWP---QHCLHTPHPDHGT*AHDEPKA 52
                    QHP+     + H  Q +Q +SPH Q P   QH  H P+  H T  H  P  
Sbjct: 392 ---------QHPQRSPHPAPHPQQHSQLQSPHPQHPSPHQHIQHHPNHQHQTLTHQAPPP 442

Query: 51  DQ 46
            Q
Sbjct: 443 PQ 444

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>RL18_HALMA (P14123) 50S ribosomal protein L18P (Hmal18) (Hl12)|
          Length = 186

 Score = 33.1 bits (74), Expect = 0.29
 Identities = 24/81 (29%), Positives = 33/81 (40%)
 Frame = +3

Query: 147 ADERRPFRALLDVGLIRTTTGNXVFXXXXXXXXXXXXIPHSDKRFAGFKKDEKSLDAEIH 326
           A E     A+LD+GL   T G+ VF            IPH+D   A +++          
Sbjct: 92  AQEAGVEEAVLDIGLNSPTPGSKVFAIQEGAIDAGLDIPHNDDVLADWQRTR-------- 143

Query: 327 RKYIYGGHVADYMRSLADEEP 389
                G H+A+Y   L  EEP
Sbjct: 144 -----GAHIAEYDEQL--EEP 157

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>RL18_ARCFU (O28373) 50S ribosomal protein L18P|
          Length = 189

 Score = 33.1 bits (74), Expect = 0.29
 Identities = 24/84 (28%), Positives = 35/84 (41%)
 Frame = +3

Query: 24  NYAAAYCTGLLLARRVLKSRDLDEEYEGNVEATGEDFSVEPADERRPFRALLDVGLIRTT 203
           N  AAY TG+L+A++ L+            +  GE              A+LD+GL   T
Sbjct: 80  NTPAAYLTGILIAKKALQ------------KGIGE--------------AVLDIGLHTPT 113

Query: 204 TGNXVFXXXXXXXXXXXXIPHSDK 275
            G+ VF            +PHSD+
Sbjct: 114 RGSRVFAVLRGAVEGGLEVPHSDE 137

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>OMB_DROME (Q24432) Optomotor-blind protein (Lethal(1)optomotor-blind) (L(1)omb)|
            (Protein bifid)
          Length = 972

 Score = 31.6 bits (70), Expect = 0.83
 Identities = 15/39 (38%), Positives = 18/39 (46%)
 Frame = -2

Query: 183  HPRAHGKASSHQQAQQRSPHQWPQHCLHTPHPDHGT*AH 67
            H +AH +   HQ   Q+  HQ P      PHP H T  H
Sbjct: 926  HTQAHHQQQQHQSHHQQQHHQQPAQ----PHPHHQTHLH 960

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>MYF6_FUGRU (Q6SYV5) Myogenic factor 6 (Myf-6) (Muscle-specific regulatory|
           factor 4)
          Length = 239

 Score = 31.2 bits (69), Expect = 1.1
 Identities = 14/30 (46%), Positives = 20/30 (66%)
 Frame = -3

Query: 263 GNVQTTVQSSLKCTKHXVSSRSPDKTNIQE 174
           GN +++  SSL C    VSS S DKTN+++
Sbjct: 205 GNCESSATSSLLCLSSIVSSISDDKTNLRQ 234

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>HRG_BOVIN (P33433) Histidine-rich glycoprotein (Histidine-proline-rich|
           glycoprotein) (HPRG) (Fragments)
          Length = 396

 Score = 30.8 bits (68), Expect = 1.4
 Identities = 17/51 (33%), Positives = 20/51 (39%)
 Frame = -2

Query: 180 PRAHGKASSHQQAQQRSPHQWPQHCLHTPHPDHGT*AHDEPKADQCSRLQH 28
           P  H   S     Q R+P  +P   L  PHP  GT  +  P  D  S   H
Sbjct: 215 PLEHKNHSDSPPFQARAPLPFPPPGLRCPHPPFGTKGNHRPPHDHSSDEHH 265

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>NIPB_DROME (Q7PLI2) Nipped-B protein (SCC2 homolog)|
          Length = 2077

 Score = 30.8 bits (68), Expect = 1.4
 Identities = 15/53 (28%), Positives = 30/53 (56%), Gaps = 2/53 (3%)
 Frame = +3

Query: 69   VLKSRDLDEEYEGNVEATGEDFSVEPADERRPF--RALLDVGLIRTTTGNXVF 221
            +++S  L++E EG+V +  + F +EP ++R  F  + LLD   +     N ++
Sbjct: 936  MIQSIKLEQEKEGDVTSNNDQFDLEPEEQRTDFLQKILLDFLAVNAQEENLIW 988

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>ZEP1_HUMAN (P15822) Zinc finger protein 40 (Human immunodeficiency virus type I|
            enhancer-binding protein 1) (HIV-EP1) (Major
            histocompatibility complex-binding protein 1) (MBP-1)
            (Positive regulatory domain II-binding factor 1)
            (PRDII-BF1)
          Length = 2717

 Score = 30.4 bits (67), Expect = 1.9
 Identities = 16/38 (42%), Positives = 22/38 (57%), Gaps = 6/38 (15%)
 Frame = -3

Query: 254  QTTVQSSLKCTKHXVSSRSP------DKTNIQERTERP 159
            + T  S LKCT +    +SP      DK NIQE+++RP
Sbjct: 1878 ENTHLSPLKCTDNNQERKSPGVKNQGDKVNIQEQSQRP 1915

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>CTR3_MOUSE (P70423) Cationic amino acid transporter 3 (CAT-3) (Solute carrier|
           family 7 member 3) (Cationic amino acid transporter y+)
          Length = 618

 Score = 30.0 bits (66), Expect = 2.4
 Identities = 17/47 (36%), Positives = 26/47 (55%)
 Frame = -3

Query: 407 VSLVLLGFLIC*RPHVVSNMPSIDVLAVNLSIQRLLVLLETSKSLVT 267
           +S  L G ++   PHV++  P    LA+ L +  LLVL  +  +LVT
Sbjct: 144 ISRTLKGTILLKMPHVLAEYPDFFALALVLLLTGLLVLGASKSALVT 190

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>SCNNB_RAT (P37090) Amiloride-sensitive sodium channel beta-subunit|
           (Epithelial Na+ channel beta subunit) (Beta ENaC)
           (Nonvoltage-gated sodium channel 1 beta subunit) (SCNEB)
           (Beta NaCH)
          Length = 638

 Score = 30.0 bits (66), Expect = 2.4
 Identities = 11/33 (33%), Positives = 17/33 (51%)
 Frame = -2

Query: 408 SEFGTSRVPHLLATSCSQQHALHRCTCGESQHP 310
           S++ T+        SC Q H +H C+CG   +P
Sbjct: 373 SDYNTTYSIQACLHSCFQDHMIHNCSCGHYLYP 405

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>PXDC1_HUMAN (Q8IUK5) Plexin domain-containing protein 1 precursor (Tumor|
           endothelial marker 7) (Tumor endothelial marker 3)
          Length = 500

 Score = 30.0 bits (66), Expect = 2.4
 Identities = 13/31 (41%), Positives = 16/31 (51%)
 Frame = -2

Query: 138 QRSPHQWPQHCLHTPHPDHGT*AHDEPKADQ 46
           +R PH WP     + HPDH T A  EP   +
Sbjct: 461 ERRPHHWPAMKFRS-HPDHSTYAEVEPSGHE 490

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>RL18_METAC (Q8TRS8) 50S ribosomal protein L18P|
          Length = 174

 Score = 30.0 bits (66), Expect = 2.4
 Identities = 35/126 (27%), Positives = 50/126 (39%)
 Frame = +3

Query: 24  NYAAAYCTGLLLARRVLKSRDLDEEYEGNVEATGEDFSVEPADERRPFRALLDVGLIRTT 203
           N  AAY TGLL     LKS  L + YEG +                     LD+GL  ++
Sbjct: 78  NTTAAYLTGLLFG---LKS--LQKGYEGGI---------------------LDIGLQASS 111

Query: 204 TGNXVFXXXXXXXXXXXXIPHSDKRFAGFKKDEKSLDAEIHRKYIYGGHVADYMRSLADE 383
            G+ V+            IP S +    F  DE+          I G H+A Y R  + +
Sbjct: 112 AGSRVYAALKGVVDSGFEIPCSPE---VFPPDER----------IRGEHIAGY-REESSD 157

Query: 384 EPEKYQ 401
            PE+++
Sbjct: 158 LPEQFE 163

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>SRY_MUSSI (Q62565) Sex-determining region Y protein (Testis-determining|
           factor)
          Length = 311

 Score = 29.6 bits (65), Expect = 3.2
 Identities = 15/36 (41%), Positives = 16/36 (44%)
 Frame = -2

Query: 153 HQQAQQRSPHQWPQHCLHTPHPDHGT*AHDEPKADQ 46
           HQQ QQ   HQ  Q  LH  H       HD P+  Q
Sbjct: 199 HQQQQQFHDHQQQQQQLHNHHHQQQQQFHDYPQQQQ 234

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>FPRB_MYCLE (O33064) Probable ferredoxin/ferredoxin--NADP reductase (EC|
           1.18.1.2) (FNR)
          Length = 555

 Score = 29.6 bits (65), Expect = 3.2
 Identities = 16/35 (45%), Positives = 20/35 (57%)
 Frame = +3

Query: 105 GNVEATGEDFSVEPADERRPFRALLDVGLIRTTTG 209
           GN  ATG +FSV   +E R F    D GL+ T+ G
Sbjct: 381 GNQRATGVEFSVTGTEESRRF----DAGLVLTSVG 411

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>SMI1_YARLI (Q6CDX0) KNR4/SMI1 homolog|
          Length = 713

 Score = 29.3 bits (64), Expect = 4.1
 Identities = 14/35 (40%), Positives = 19/35 (54%)
 Frame = -2

Query: 186 QHPRAHGKASSHQQAQQRSPHQWPQHCLHTPHPDH 82
           +H R    A++ QQ QQ+  H   Q  LH+P P H
Sbjct: 407 EHERRQAAAAAQQQQQQQQHHA--QGGLHSPSPQH 439

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>PXDC1_MOUSE (Q91ZV7) Plexin domain-containing protein 1 precursor (Tumor|
           endothelial marker 7)
          Length = 500

 Score = 29.3 bits (64), Expect = 4.1
 Identities = 12/31 (38%), Positives = 15/31 (48%)
 Frame = -2

Query: 138 QRSPHQWPQHCLHTPHPDHGT*AHDEPKADQ 46
           +R PH WP    H  HP+H T    EP   +
Sbjct: 461 ERRPHHWPAMKFHN-HPNHSTYTEVEPSGHE 490

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>PALA_MAGGR (Q51NJ3) pH-response regulator protein palA/RIM20|
          Length = 849

 Score = 29.3 bits (64), Expect = 4.1
 Identities = 12/44 (27%), Positives = 21/44 (47%)
 Frame = -2

Query: 153 HQQAQQRSPHQWPQHCLHTPHPDHGT*AHDEPKADQCSRLQHSW 22
           + Q QQ+ P   PQ   H+ + D G+    +P+    +  Q +W
Sbjct: 764 YSQQQQQQPRSPPQEAHHSAYADTGSMPPQQPRPLPAANAQQTW 807

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>ATG18_KLULA (Q6CS21) Autophagy-related protein 18|
          Length = 500

 Score = 29.3 bits (64), Expect = 4.1
 Identities = 26/114 (22%), Positives = 52/114 (45%), Gaps = 4/114 (3%)
 Frame = -3

Query: 335 VLAVNLSIQRLLVLLETSKSLVTVGNVQT--TVQSSLKCTKHXVSSRSPDKTNIQERTER 162
           +L+V ++  RL VLL+    +  + N++   T+++S+      + S SP+  N       
Sbjct: 94  ILSVKMNKSRLAVLLQEQIYIYDISNMRLLHTIETSMNA--QGIMSMSPNSENNYLVYPS 151

Query: 161 PPLI--SRLNREVLTSGLNIAFILLIQITGLEHTTSQKQTSAVGCSIVGE*QRQ 6
           PP +  S +     T+ +NI      +   ++ T  +  +  V   I G+ Q+Q
Sbjct: 152 PPKVINSEIKDHATTNNINIK-----KTDAVDDTIKKDYSLQVPSDITGQQQQQ 200

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>CTR3_RAT (O08812) Cationic amino acid transporter 3 (CAT-3) (Solute carrier|
           family 7 member 3) (Cationic amino acid transporter y+)
          Length = 619

 Score = 29.3 bits (64), Expect = 4.1
 Identities = 17/47 (36%), Positives = 24/47 (51%)
 Frame = -3

Query: 407 VSLVLLGFLIC*RPHVVSNMPSIDVLAVNLSIQRLLVLLETSKSLVT 267
           +S  L G ++   PHV++  P    LA+ L +  LLVL      LVT
Sbjct: 144 ISQTLKGTILLNMPHVLAEYPDFFALALVLLLTGLLVLGANESGLVT 190

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>ITB6_HUMAN (P18564) Integrin beta-6 precursor|
          Length = 788

 Score = 28.9 bits (63), Expect = 5.4
 Identities = 15/46 (32%), Positives = 20/46 (43%), Gaps = 6/46 (13%)
 Frame = -2

Query: 366 SCSQQHALHRCTCGESQHPETS------RPS*NQQISCHCGECPDH 247
           +C   H   RC CGE      S       PS + +  C+CG+C  H
Sbjct: 480 ACHPGHMGPRCECGEDMLSTDSCKEAPDHPSCSGRGDCYCGQCICH 525

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>PI5PA_RAT (Q9JMC1) Phosphatidylinositol 4,5-bisphosphate 5-phosphatase A (EC|
           3.1.3.56) (Proline-rich inositol polyphosphate
           5-phosphatase)
          Length = 1001

 Score = 28.9 bits (63), Expect = 5.4
 Identities = 18/51 (35%), Positives = 24/51 (47%), Gaps = 5/51 (9%)
 Frame = -1

Query: 253 RPPSKAPLSAPNTX-----FPVVVLIRPTSKSARKGLLSSAGSTEKSSPVA 116
           R PS++P  +PN        P V L RP ++ A  G   S     + SPVA
Sbjct: 347 RSPSRSPSRSPNRSPCVPPAPEVALPRPVTQGAGPGKCPSPNLQTQESPVA 397

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>SRY_MOUSE (Q05738) Sex-determining region Y protein (Testis-determining|
           factor)
          Length = 395

 Score = 28.9 bits (63), Expect = 5.4
 Identities = 17/47 (36%), Positives = 21/47 (44%), Gaps = 1/47 (2%)
 Frame = -2

Query: 183 HPRAHGKASSHQQAQQR-SPHQWPQHCLHTPHPDHGT*AHDEPKADQ 46
           H +   +   HQQ QQ+   HQ  QH  H  HP      HD P+  Q
Sbjct: 254 HHQQQQQFHDHQQQQQQFHDHQQQQHQFH-DHPQQKQQFHDHPQQQQ 299

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>PCDH7_HUMAN (O60245) Protocadherin-7 precursor (Brain-heart protocadherin)|
           (BH-Pcdh)
          Length = 1069

 Score = 28.5 bits (62), Expect = 7.1
 Identities = 32/121 (26%), Positives = 53/121 (43%), Gaps = 17/121 (14%)
 Frame = -3

Query: 329 AVNLSIQRLLVLLETSKSLVTVGNVQTTVQSSLKCTKHXVSSRSPDKT-------NIQER 171
           A   S++RLL L ETS  L  +  +     + L+ T        P KT       NI++ 
Sbjct: 349 AATESVRRLLRLDETSGWLSVLHRIDREEVNQLRFTVMARDRGQPPKTDKATVVLNIKDE 408

Query: 170 TERPPLIS--RLNREVLTSGL-NIAF-------ILLIQITGLEHTTSQKQTSAVGCSIVG 21
            +  P I   ++ R  L  G+ N+A        I L+Q++  +    Q +   V C++VG
Sbjct: 409 NDNVPSIEIRKIGRIPLKDGVANVAEDVLVDTPIALVQVSDRD----QGENGVVTCTVVG 464

Query: 20  E 18
           +
Sbjct: 465 D 465

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>JHD2A_MOUSE (Q6PCM1) JmjC domain-containing histone demethylation protein 2A|
           (EC 1.14.11.-) (Jumonji domain-containing protein 1A)
          Length = 1323

 Score = 28.5 bits (62), Expect = 7.1
 Identities = 18/49 (36%), Positives = 24/49 (48%), Gaps = 2/49 (4%)
 Frame = -3

Query: 290 ETSKSLVTVGNVQTTV--QSSLKCTKHXVSSRSPDKTNIQERTERPPLI 150
           E S S+  V +V TTV  +  L CT    SS+ P + N  +    PP I
Sbjct: 281 EASPSMCPVQSVPTTVFKEILLGCTAATPSSKDPRQQNTPQAANSPPNI 329

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>YH17_YEAST (P38898) Hypothetical 17.1 kDa protein in PUR5 3'region|
          Length = 153

 Score = 28.5 bits (62), Expect = 7.1
 Identities = 12/32 (37%), Positives = 14/32 (43%)
 Frame = -2

Query: 183 HPRAHGKASSHQQAQQRSPHQWPQHCLHTPHP 88
           HP  H    +H      +PH  P    HTPHP
Sbjct: 27  HPHPHTPTHTHPHTPTPTPHPHP----HTPHP 54

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>JHD2C_MOUSE (Q69ZK6) Probable JmjC domain-containing histone demethylation|
           protein 2C (EC 1.14.11.-) (Jumonji domain-containing
           protein 1C)
          Length = 2350

 Score = 28.1 bits (61), Expect = 9.2
 Identities = 40/108 (37%), Positives = 42/108 (38%), Gaps = 9/108 (8%)
 Frame = -2

Query: 384 PHLLATSCSQQHALHRCTCGESQHPETSRPS*NQQISCHCGECPDHRPKL-P*VHQTXGF 208
           PHLLA S SQ       T     HP TS P             P H P L P V    G 
Sbjct: 581 PHLLAGSTSQTPLPTINT-----HPLTSGP-----------HHPVHHPHLLPTV--LPGV 622

Query: 207 QS*S**DQHPR---AHGKASSH-----QQAQQRSPHQWPQHCLHTPHP 88
            + S    HPR   AH  + SH     QQ QQ   HQ P H L   HP
Sbjct: 623 PTASLLGGHPRLESAHASSLSHLALAHQQQQQLLQHQSP-HLLGQAHP 669

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>JHD2C_HUMAN (Q15652) Probable JmjC domain-containing histone demethylation|
            protein 2C (EC 1.14.11.-) (Jumonji domain-containing
            protein 1C) (Thyroid receptor-interacting protein 8)
            (TRIP-8)
          Length = 2540

 Score = 28.1 bits (61), Expect = 9.2
 Identities = 37/107 (34%), Positives = 39/107 (36%), Gaps = 8/107 (7%)
 Frame = -2

Query: 384  PHLLATSCSQQHALHRCTCGESQHPETSRPS*NQQISCHCGECPDHRPKLP*VHQTXGFQ 205
            PHLLA S SQ       T     HP TS P        H    P   P +P      G  
Sbjct: 762  PHLLAGSSSQTPLPTINT-----HPLTSGP---HHAVHHPHLLPTVLPGVPTASLLGG-- 811

Query: 204  S*S**DQHPR---AHGKASSH-----QQAQQRSPHQWPQHCLHTPHP 88
                   HPR   AH  + SH     QQ QQ   HQ P H L   HP
Sbjct: 812  -------HPRLESAHASSLSHLALAHQQQQQLLQHQSP-HLLGQAHP 850

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>EMS_DROME (P18488) Homeotic protein empty spiracles|
          Length = 497

 Score = 28.1 bits (61), Expect = 9.2
 Identities = 19/59 (32%), Positives = 23/59 (38%), Gaps = 6/59 (10%)
 Frame = -2

Query: 183 HPRAHGKASSHQQAQQRSPHQWP--QHCLH----TPHPDHGT*AHDEPKADQCSRLQHS 25
           HP A  +   H QA    PH  P  QH LH      H   GT    +   +   RL H+
Sbjct: 95  HPHAQQQQQQHLQAPHPHPHLSPAQQHVLHQHLLMQHQHPGTPKSHQDIQELLQRLHHN 153


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.318    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 59,131,607
Number of Sequences: 219361
Number of extensions: 1130722
Number of successful extensions: 4118
Number of sequences better than 10.0: 66
Number of HSP's better than 10.0 without gapping: 3850
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 4073
length of database: 80,573,946
effective HSP length: 101
effective length of database: 58,418,485
effective search space used: 2395157885
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)

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full-length cDNA and EST

Clone Information

BLAST Search Result