>VPAP_HHV11 (P10226) DNA polymerase processivity factor (Polymerase accessory|
           protein) (PAP) (DNA-binding protein UL42)
          Length = 488

 Score = 32.7 bits (73), Expect = 0.64
 Identities = 26/94 (27%), Positives = 38/94 (40%), Gaps = 7/94 (7%)
 Frame = +3

Query: 75  PTFLITVVVDNAFRA-------RSVVQWHGFCQGPPTGTSPADGIDGVTSTYYYYVADRS 233
           P+  +T    NA  A       +  + W G  QG P+  S A    G   T     A  +
Sbjct: 297 PSLCVTATGPNAVSAVFLLKPQKICLDWLGHSQGSPSAGSSASRASGSEPTDSQDSASDA 356

Query: 234 CSGRDSATMFSAGQGGEAGPIADGHACCRRANTS 335
            S  D   +  A + GEAG +   HAC   ++T+
Sbjct: 357 VSHGDPEDLDGAARAGEAGAL---HACPMPSSTT 387

>LAMC3_HUMAN (Q9Y6N6) Laminin gamma-3 chain precursor (Laminin 12 gamma 3|
           subunit)
          Length = 1587

 Score = 31.2 bits (69), Expect = 1.9
 Identities = 17/49 (34%), Positives = 21/49 (42%)
 Frame = +3

Query: 195 VTSTYYYYVADRSCSGRDSATMFSAGQGGEAGPIADGHACCRRANTSAG 341
           V  +YYY V+D S  GR        G   E GP   G   CR  + + G
Sbjct: 254 VLQSYYYAVSDFSVGGRCKCN----GHASECGPDVAGQLACRCQHNTTG 298

>UL38_HCMVA (P16779) Protein UL38|
          Length = 331

 Score = 30.0 bits (66), Expect = 4.1
 Identities = 17/43 (39%), Positives = 22/43 (51%), Gaps = 2/43 (4%)
 Frame = +1

Query: 232 HALAETVL--PCSVPAKEERPDPSLTATRAADEPTPPPDMVSP 354
           HA A+ VL  P S+P      DP+  AT ++   T PP  V P
Sbjct: 252 HAPAQRVLSAPPSLPLPVSEEDPAAAATPSSSAATTPPSSVVP 294

>LBD13_ARATH (Q9AT61) LOB domain protein 13|
          Length = 268

 Score = 30.0 bits (66), Expect = 4.1
 Identities = 18/43 (41%), Positives = 23/43 (53%), Gaps = 2/43 (4%)
 Frame = +1

Query: 232 HALAETVL--PCSVPAKEERPDPSLTATRAADEPTPPPDMVSP 354
           HALA  +L  P   P    RP P L +++ A  PTPP  + SP
Sbjct: 184 HALASAILLPPPPPPPPTPRP-PRLLSSQPAPPPTPPVSLPSP 225

>MYB_HUMAN (P10242) Myb proto-oncogene protein (C-myb)|
          Length = 640

 Score = 30.0 bits (66), Expect = 4.1
 Identities = 13/26 (50%), Positives = 14/26 (53%)
 Frame = +3

Query: 141 GFCQGPPTGTSPADGIDGVTSTYYYY 218
           GF Q PPT   PA G   V + Y YY
Sbjct: 222 GFAQAPPTAQLPATGQPTVNNDYSYY 247

>MUC1_YEAST (P08640) Mucin-like protein 1 precursor|
          Length = 1367

 Score = 29.6 bits (65), Expect = 5.4
 Identities = 13/53 (24%), Positives = 23/53 (43%)
 Frame = +1

Query: 256 PCSVPAKEERPDPSLTATRAADEPTPPPDMVSPVCR*KTRDG*TAVARAANQI 414
           P +    +E+P P  T +   ++PTPP    +P  + KT    T   +    +
Sbjct: 262 PTTTSCTKEKPTPPTTTSCTKEKPTPPHHDTTPCTKKKTTTSKTCTKKTTTPV 314

>ZN219_HUMAN (Q9P2Y4) Zinc finger protein 219|
          Length = 722

 Score = 29.6 bits (65), Expect = 5.4
 Identities = 16/40 (40%), Positives = 19/40 (47%), Gaps = 5/40 (12%)
 Frame = +1

Query: 256 PCSVPAKEERPDPSLTAT-----RAADEPTPPPDMVSPVC 360
           P SVP  E  P+P   AT      A +EP  PP+    VC
Sbjct: 240 PRSVPQPEPEPEPEREATPTPAPAAPEEPPAPPEFRCQVC 279

>WASF1_MOUSE (Q8R5H6) Wiskott-Aldrich syndrome protein family member 1|
           (WASP-family protein member 1) (WAVE-1 protein)
          Length = 559

 Score = 29.6 bits (65), Expect = 5.4
 Identities = 18/56 (32%), Positives = 22/56 (39%)
 Frame = -3

Query: 391 PPFIRPSSFSGTLAIPCPAEVLARRQHAWPSAMGPASPPWPALNMVALSRPEHERS 224
           PP IRPSS     A+  P   L       P    P  PP P   ++  S P+   S
Sbjct: 434 PPGIRPSSPVAVAALAHPPSGLHPAPSTAPGPHAPLMPPSPPSQVLPASEPKRHPS 489

>SYL_CORDI (Q6NEF5) Leucyl-tRNA synthetase (EC 6.1.1.4) (Leucine--tRNA ligase)|
           (LeuRS)
          Length = 960

 Score = 29.6 bits (65), Expect = 5.4
 Identities = 14/37 (37%), Positives = 19/37 (51%)
 Frame = +1

Query: 226 IVHALAETVLPCSVPAKEERPDPSLTATRAADEPTPP 336
           + HAL E++LP  +P  E+    S     A  EP PP
Sbjct: 539 LAHALPESMLPVELPEVEDYKPVSFDPDDADSEPHPP 575

>STAT_DROME (Q24151) Signal transducer and transcription activator (Protein|
           marelle) (d-STAT)
          Length = 761

 Score = 29.6 bits (65), Expect = 5.4
 Identities = 17/49 (34%), Positives = 25/49 (51%)
 Frame = -1

Query: 450 THMAPAL*NARDNLVCSTGNRRSSVPRLSAAHWRYHVRRRCWLVGSTRG 304
           TH+   + NA+ NLVCS        P++   + R+    R WL+GS  G
Sbjct: 324 THLLEQVQNAQKNLVCSAFIVDKQPPQVMKTNTRFAASVR-WLIGSQLG 371

>SYL_CORGL (Q8NLC4) Leucyl-tRNA synthetase (EC 6.1.1.4) (Leucine--tRNA ligase)|
           (LeuRS)
          Length = 952

 Score = 28.9 bits (63), Expect = 9.2
 Identities = 13/35 (37%), Positives = 19/35 (54%)
 Frame = +1

Query: 232 HALAETVLPCSVPAKEERPDPSLTATRAADEPTPP 336
           HAL +++LP  +P  E+    S     A  EP+PP
Sbjct: 530 HALPDSMLPVELPEVEDYKPVSFDPEDADSEPSPP 564

>SYL_COREF (Q8FLM0) Leucyl-tRNA synthetase (EC 6.1.1.4) (Leucine--tRNA ligase)|
           (LeuRS)
          Length = 957

 Score = 28.9 bits (63), Expect = 9.2
 Identities = 13/37 (35%), Positives = 20/37 (54%)
 Frame = +1

Query: 226 IVHALAETVLPCSVPAKEERPDPSLTATRAADEPTPP 336
           + +AL E++LP  +P  E+    S     A  EP+PP
Sbjct: 533 VAYALPESMLPVELPEVEDYKPVSFDPEDADSEPSPP 569

>RUSC2_MOUSE (Q80U22) RUN and SH3 domain-containing protein 2|
          Length = 1514

 Score = 28.9 bits (63), Expect = 9.2
 Identities = 21/59 (35%), Positives = 24/59 (40%)
 Frame = -3

Query: 418  GQFGLQHGQPPFIRPSSFSGTLAIPCPAEVLARRQHAWPSAMGPASPPWPALNMVALSR 242
            G  G     PP  R     G  A P P E L  ++  WP  MG  SPP   L  +  SR
Sbjct: 1303 GSGGPSQAPPPPPREGVVEGAEACPAPEEALG-QERGWPFWMG--SPPDSVLAELRRSR 1358

>CDC2C_ANTMA (Q38774) Cell division control protein 2 homolog C (EC 2.7.11.22)|
           (EC 2.7.11.23)
          Length = 305

 Score = 28.9 bits (63), Expect = 9.2
 Identities = 16/42 (38%), Positives = 22/42 (52%), Gaps = 6/42 (14%)
 Frame = +3

Query: 123 SVVQWHGFCQGPPTGTSPA------DGIDGVTSTYYYYVADR 230
           S+  WH + Q  P  ++PA      DG+D +T T  Y  ADR
Sbjct: 244 SLRDWHVYPQWEPQNSAPAVPSLGPDGLDLLTKTLKYDPADR 285

>YBEM_ECOLI (P39874) Hypothetical UPF0012 protein ybeM (EC 3.5.-.-)|
          Length = 262

 Score = 28.9 bits (63), Expect = 9.2
 Identities = 16/30 (53%), Positives = 18/30 (60%)
 Frame = -3

Query: 163 VGGP*QKPCHWTTLLARKALSTTTVMRKVG 74
           V GP  K  HW+TLLA +AL TT  M   G
Sbjct: 174 VRGP-LKEHHWSTLLAARALDTTCYMVAAG 202

>YBEM_ECO57 (P58054) Hypothetical UPF0012 protein ybeM (EC 3.5.-.-)|
          Length = 262

 Score = 28.9 bits (63), Expect = 9.2
 Identities = 16/30 (53%), Positives = 18/30 (60%)
 Frame = -3

Query: 163 VGGP*QKPCHWTTLLARKALSTTTVMRKVG 74
           V GP  K  HW+TLLA +AL TT  M   G
Sbjct: 174 VRGP-LKEHHWSTLLAARALDTTCYMVAAG 202


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.318    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 76,219,940
Number of Sequences: 219361
Number of extensions: 1587983
Number of successful extensions: 5245
Number of sequences better than 10.0: 16
Number of HSP's better than 10.0 without gapping: 4818
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 5235
length of database: 80,573,946
effective HSP length: 105
effective length of database: 57,541,041
effective search space used: 4085413911
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)