>Y33B_DROME (Q9U1M2) Hypothetical protein CG32795 in chromosome 1|
          Length = 387

 Score = 63.2 bits (152), Expect = 4e-10
 Identities = 46/167 (27%), Positives = 75/167 (44%), Gaps = 1/167 (0%)
 Frame = +3

Query: 9   LRXXVLLVNGSDIRPWWIYHHYLAMLMALVSLTWEIKGQPDCSSKQRGVQLFLRWAIMQG 188
           +R  +L VNGS I+ WW  HH+++ + A V L W     P     Q     F+ + +   
Sbjct: 170 IRESILKVNGSRIKGWWRAHHFISTVAAGVLLVW-----PQGEHWQIFRMQFMYFNVYIS 224

Query: 189 IAMHLQNRYQRQRLRTRIALGKAKRMDV-VAGETAGVEGQXXXXXXXXXXXQGFEGYVGV 365
           I  +LQ  YQ+  L    ALG+   MD+ + G  + +               G++ Y   
Sbjct: 225 IVQYLQFGYQKGLLYRLKALGERHNMDITIEGFHSWMWRGLSFLLPFLFIGYGYQAYNAW 284

Query: 366 LLLQTAWHGLTSEWQVIVCGILLVVMAVGNFVNTVETLALKLRFKAK 506
            L + A+    + W V V   L +++ VGN   T+  +  K+R +AK
Sbjct: 285 TLYKLAYSPPDAPWHVSVMSGLFLLLFVGNMATTLWVVPEKIRERAK 331

>NU2C_SYNY3 (P72714) NAD(P)H-quinone oxidoreductase chain 2 (EC 1.6.5.-)|
           (NAD(P)H dehydrogenase I, chain 2) (NDH-1, chain 2)
          Length = 521

 Score = 35.4 bits (80), Expect = 0.100
 Identities = 16/40 (40%), Positives = 24/40 (60%)
 Frame = +3

Query: 357 VGVLLLQTAWHGLTSEWQVIVCGILLVVMAVGNFVNTVET 476
           V + LL TA+ G+T EW VI   + ++ M +GN V   +T
Sbjct: 264 VAIRLLVTAFGGITDEWHVIFTALAVLSMVLGNVVALAQT 303

>MUC5B_HUMAN (Q9HC84) Mucin-5B precursor (Mucin 5 subtype B, tracheobronchial)|
            (High molecular weight salivary mucin MG1) (Sublingual
            gland mucin)
          Length = 5703

 Score = 31.2 bits (69), Expect = 1.9
 Identities = 28/76 (36%), Positives = 43/76 (56%), Gaps = 5/76 (6%)
 Frame = -1

Query: 472  STVLTKLPTAI--TTSKIP-QTMTCHSEVSPCHAV*RSNTP--TYPSNPCNTKRTGYSSN 308
            +T +T +P++   TT  +P QT T  + +S  H    S+TP  T+ S    TK T  +++
Sbjct: 4262 ATSVTPIPSSTLGTTGTLPEQTTTPVATMSTIHP---SSTPETTHTSTVLTTKATTRATS 4318

Query: 307  SCPSTPAVSPATTSIL 260
            S  STP+ +P TT IL
Sbjct: 4319 ST-STPSSTPGTTWIL 4333



 Score = 30.4 bits (67), Expect = 3.2
 Identities = 22/65 (33%), Positives = 31/65 (47%), Gaps = 2/65 (3%)
 Frame = -1

Query: 448  TAITTSKIPQTMTCHSEVSPCHAV*RSNTP--TYPSNPCNTKRTGYSSNSCPSTPAVSPA 275
            T  + ++ P  M   S + P      S+TP  T+ S    TK T   + S  STP+ +P 
Sbjct: 3049 TGTSQNRPPHPMATMSTIHP------SSTPETTHTSTVLTTKATTTRATSSMSTPSSTPG 3102

Query: 274  TTSIL 260
            TT IL
Sbjct: 3103 TTWIL 3107

>MUC2_HUMAN (Q02817) Mucin-2 precursor (Intestinal mucin 2)|
          Length = 5179

 Score = 30.8 bits (68), Expect = 2.5
 Identities = 22/76 (28%), Positives = 31/76 (40%), Gaps = 4/76 (5%)
 Frame = -1

Query: 475  VSTVLTKLPTAITTSKIPQTMTCHSEVSPCHAV*RSNTPTYPSNPCNTKRTGYSSNSCPS 296
            ++T  T LPT   +  I  T T     +P       + PT   +P  T  T     + PS
Sbjct: 1442 ITTTTTPLPTTTPSPPISTTTTPPPTTTPSPPTTTPSPPTTTPSPPTTTTTTPPPTTTPS 1501

Query: 295  ----TPAVSPATTSIL 260
                TP   PA+T+ L
Sbjct: 1502 PPMTTPITPPASTTTL 1517



 Score = 29.3 bits (64), Expect = 7.2
 Identities = 25/74 (33%), Positives = 30/74 (40%), Gaps = 3/74 (4%)
 Frame = -1

Query: 472  STVLTKLPTAITTSKIPQTMTCHSEVSPCHAV*RSNTP---TYPSNPCNTKRTGYSSNSC 302
            +T+ T  PT   +S I  T T  S  +P        TP   T PS P  T  T       
Sbjct: 1694 TTMTTPSPTTTPSSPITTTTTPSSTTTPSPPPTTMTTPSPTTTPSPPTTTMTT------L 1747

Query: 301  PSTPAVSPATTSIL 260
            P T   SP TT+ L
Sbjct: 1748 PPTTTSSPLTTTPL 1761

>IDNO_ECOLI (P0A9P9) Gluconate 5-dehydrogenase (EC 1.1.1.69)|
           (5-keto-D-gluconate 5-reductase)
          Length = 254

 Score = 30.0 bits (66), Expect = 4.2
 Identities = 18/42 (42%), Positives = 23/42 (54%)
 Frame = -2

Query: 366 TLQHILQTPVIQKEQDIVAIAALPHQLFLQRRHPFF*PFPEQ 241
           T +H +   V   E+DI  I  L +   +QRRHPF   FPEQ
Sbjct: 68  THKHEIDAAVEHIEKDIGPIDVLVNNAGIQRRHPFT-EFPEQ 108

>IDNO_ECOL6 (P0A9Q0) Gluconate 5-dehydrogenase (EC 1.1.1.69)|
           (5-keto-D-gluconate 5-reductase)
          Length = 254

 Score = 30.0 bits (66), Expect = 4.2
 Identities = 18/42 (42%), Positives = 23/42 (54%)
 Frame = -2

Query: 366 TLQHILQTPVIQKEQDIVAIAALPHQLFLQRRHPFF*PFPEQ 241
           T +H +   V   E+DI  I  L +   +QRRHPF   FPEQ
Sbjct: 68  THKHEIDAAVEHIEKDIGPIDVLVNNAGIQRRHPFT-EFPEQ 108

>NFRKB_XENTR (Q6P4L9) Nuclear factor related to kappa-B-binding protein|
            (DNA-binding protein R kappa-B)
          Length = 1265

 Score = 29.6 bits (65), Expect = 5.5
 Identities = 21/71 (29%), Positives = 30/71 (42%)
 Frame = -1

Query: 445  AITTSKIPQTMTCHSEVSPCHAV*RSNTPTYPSNPCNTKRTGYSSNSCPSTPAVSPATTS 266
            +IT S  P T+   + V+P H+    + PT  S    T  TG    +  +T    P TT+
Sbjct: 1082 SITVSAKPVTVPSSTIVNPVHSASNVSLPTVNSTAVKTAPTGIVVGTGAATVRQIPVTTT 1141

Query: 265  ILLAFPRAIRV 233
                 P  I V
Sbjct: 1142 QQGKLPARITV 1152

>RAD52_ASHGO (Q756F4) DNA repair and recombination protein RAD52|
          Length = 435

 Score = 29.6 bits (65), Expect = 5.5
 Identities = 16/30 (53%), Positives = 21/30 (70%), Gaps = 1/30 (3%)
 Frame = -3

Query: 527 PVPRPLHLCFEPQFQGQSL-HRVDEVANRH 441
           PVP P HL F+P+FQ QS+ H VD+  + H
Sbjct: 300 PVP-PTHL-FDPKFQAQSIRHTVDQTTSAH 327

>DAN4_YEAST (P47179) Cell wall protein DAN4 precursor|
          Length = 1161

 Score = 29.3 bits (64), Expect = 7.2
 Identities = 18/62 (29%), Positives = 31/62 (50%)
 Frame = -1

Query: 451 PTAITTSKIPQTMTCHSEVSPCHAV*RSNTPTYPSNPCNTKRTGYSSNSCPSTPAVSPAT 272
           PT  TTS  P T T  +  +P  +   + + T  ++  +TK T  +++S  +TP  S   
Sbjct: 207 PTTSTTSTTPTTST--TSTTPTTSTTPTTSTTSTTSQTSTKSTTPTTSSTSTTPTTSTTP 264

Query: 271 TS 266
           T+
Sbjct: 265 TT 266

>NU2C_SYNP7 (P29801) NAD(P)H-quinone oxidoreductase chain 2 (EC 1.6.5.-)|
           (NAD(P)H dehydrogenase I, chain 2) (NDH-1, chain 2)
          Length = 521

 Score = 29.3 bits (64), Expect = 7.2
 Identities = 12/45 (26%), Positives = 24/45 (53%)
 Frame = +3

Query: 357 VGVLLLQTAWHGLTSEWQVIVCGILLVVMAVGNFVNTVETLALKL 491
           + + LL TA+  LT +W  +   + ++ + +GN V   +T   +L
Sbjct: 259 LAIRLLVTAYPALTEQWHFVFTALAILSLVLGNVVALAQTSMKRL 303

>NU2C_SYNP6 (Q5N5T8) NAD(P)H-quinone oxidoreductase chain 2 (EC 1.6.5.-)|
           (NAD(P)H dehydrogenase I, chain 2) (NDH-1, chain 2)
          Length = 521

 Score = 29.3 bits (64), Expect = 7.2
 Identities = 12/45 (26%), Positives = 24/45 (53%)
 Frame = +3

Query: 357 VGVLLLQTAWHGLTSEWQVIVCGILLVVMAVGNFVNTVETLALKL 491
           + + LL TA+  LT +W  +   + ++ + +GN V   +T   +L
Sbjct: 259 LAIRLLVTAYPALTEQWHFVFTALAILSLVLGNVVALAQTSMKRL 303

>MUC2_RAT (Q62635) Mucin-2 precursor (Intestinal mucin 2) (Fragment)|
          Length = 1513

 Score = 28.9 bits (63), Expect = 9.3
 Identities = 22/64 (34%), Positives = 26/64 (40%)
 Frame = -1

Query: 469  TVLTKLPTAITTSKIPQTMTCHSEVSPCHAV*RSNTPTYPSNPCNTKRTGYSSNSCPSTP 290
            T  T  PT  TTS  P   T  S  SP  +   S T   PS   +T     S  + P+T 
Sbjct: 1452 TTSTTSPTTSTTSPTPSPTT--STTSPTPSPTTSTTSPTPSPTTSTTSPTTSPITSPTTS 1509

Query: 289  AVSP 278
              SP
Sbjct: 1510 TTSP 1513

>CHIT_CAEEL (Q11174) Probable endochitinase (EC 3.2.1.14)|
          Length = 617

 Score = 28.9 bits (63), Expect = 9.3
 Identities = 19/62 (30%), Positives = 30/62 (48%), Gaps = 4/62 (6%)
 Frame = -1

Query: 475 VSTVLTKLPTAITTSKIPQTMTCHSEVSPCHAV*RSNTPTYPSNP--CNTKRTGY--SSN 308
           V+T  T + T +TT + P T    +  +      R+ T T  SN   C+ K  G+  +SN
Sbjct: 434 VTTAPTTVATTVTTGRPPMTSAVTTTTAATTTTTRAATTTTASNTNVCSGKSDGFYPNSN 493

Query: 307 SC 302
           +C
Sbjct: 494 NC 495

>VPS62_YEAST (P53285) Vacuolar protein sorting protein 62|
          Length = 467

 Score = 28.9 bits (63), Expect = 9.3
 Identities = 12/37 (32%), Positives = 21/37 (56%)
 Frame = +1

Query: 220 VKDYAPELLWERLKEWMSSLEKQLVWKGSYCYYILFF 330
           V D    LL+    +W+ S+ + L W+GS C+ + +F
Sbjct: 429 VGDNCGILLYNIRPKWLRSILRFLTWRGSVCFIMDYF 465

>SUH_MOUSE (P31266) Recombining binding protein suppressor of hairless (J|
           kappa-recombination signal binding protein) (RBP-J
           kappa)
          Length = 526

 Score = 28.9 bits (63), Expect = 9.3
 Identities = 13/45 (28%), Positives = 26/45 (57%)
 Frame = -1

Query: 394 SPCHAV*RSNTPTYPSNPCNTKRTGYSSNSCPSTPAVSPATTSIL 260
           S   A+ R+N+   PSN  NT   G  +N+  ++ +V+ +T +++
Sbjct: 481 SAAGAILRANSSQVPSNESNTNSEGNYTNASTNSTSVTSSTATVV 525


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.318    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 80,894,205
Number of Sequences: 219361
Number of extensions: 1771202
Number of successful extensions: 5715
Number of sequences better than 10.0: 15
Number of HSP's better than 10.0 without gapping: 5452
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 5708
length of database: 80,573,946
effective HSP length: 105
effective length of database: 57,541,041
effective search space used: 4142954952
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)