>CT011_MOUSE (Q9D7M1) Protein C20orf11 homolog (Two-hybrid associated protein 1|
           with RanBPM) (Twa1)
          Length = 228

 Score =  128 bits (322), Expect = 1e-29
 Identities = 67/132 (50%), Positives = 91/132 (68%), Gaps = 1/132 (0%)
 Frame = +3

Query: 63  LTPRFWXTNPELYFHLQQQKLIELIRVGKINEALEFAQEELAPRGEENQAFLEEIEKTVA 242
           L P    TN  LYFHLQQQ LIELIR  +   ALEFAQ +LA +GEE++  L E+E+T+A
Sbjct: 89  LHPELLDTNRYLYFHLQQQHLIELIRQRETEAALEFAQTQLAEQGEESRECLTEMERTLA 148

Query: 243 LLVFEDVKNCPYGELLDVSQRLKTASEVNAAILTSQSHEKDPKLPSLLKMLIWTQNQLNE 422
           LL F+  +  P+G+LL + QR K  SEVN A+L  ++ E  PKL  LLK+L+W QN+L++
Sbjct: 149 LLAFDSPEESPFGDLLHMMQRQKVWSEVNQAVLDYENRESTPKLAKLLKLLLWAQNELDQ 208

Query: 423 -KAAYPRINNLS 455
            K  YP++ +LS
Sbjct: 209 KKVKYPKMTDLS 220

>CT011_HUMAN (Q9NWU2) Protein C20orf11 (Two-hybrid associated protein 1 with|
           RanBPM) (Twa1)
          Length = 228

 Score =  128 bits (321), Expect = 1e-29
 Identities = 67/132 (50%), Positives = 90/132 (68%), Gaps = 1/132 (0%)
 Frame = +3

Query: 63  LTPRFWXTNPELYFHLQQQKLIELIRVGKINEALEFAQEELAPRGEENQAFLEEIEKTVA 242
           L P    TN  LYFHLQQQ LIELIR  +   ALEFAQ +LA +GEE++  L E+E+T+A
Sbjct: 89  LHPELLDTNRYLYFHLQQQHLIELIRQRETEAALEFAQTQLAEQGEESRECLTEMERTLA 148

Query: 243 LLVFEDVKNCPYGELLDVSQRLKTASEVNAAILTSQSHEKDPKLPSLLKMLIWTQNQLNE 422
           LL F+  +  P+G+LL   QR K  SEVN A+L  ++ E  PKL  LLK+L+W QN+L++
Sbjct: 149 LLAFDSPEESPFGDLLHTMQRQKVWSEVNQAVLDYENRESTPKLAKLLKLLLWAQNELDQ 208

Query: 423 -KAAYPRINNLS 455
            K  YP++ +LS
Sbjct: 209 KKVKYPKMTDLS 220

>YDED_SCHPO (Q10446) Hypothetical protein C12B10.13 in chromosome I|
          Length = 240

 Score = 65.1 bits (157), Expect = 1e-10
 Identities = 44/127 (34%), Positives = 61/127 (48%), Gaps = 10/127 (7%)
 Frame = +3

Query: 63  LTPRFWXTNPELYFHLQQQKLIELIRVG---------KINEALEFAQEELAPRGEENQAF 215
           L P    TN EL F L + +L+ELIR            +   L FA E LAP    NQ F
Sbjct: 96  LEPEILDTNSELLFELLRLRLLELIREVVEEKDTSDLAVERCLNFAHENLAPLAPSNQKF 155

Query: 216 LEEIEKTVALLVFEDVKNCP-YGELLDVSQRLKTASEVNAAILTSQSHEKDPKLPSLLKM 392
           L  +E T++LL F      P    +L+ SQR + A+  N +IL SQ    + +L SL+  
Sbjct: 156 LNSLELTMSLLCFPPSSYSPALKNVLNYSQRERVANLANVSILKSQGLSNESRLLSLVNF 215

Query: 393 LIWTQNQ 413
             W + +
Sbjct: 216 ERWCEKE 222

>HSP83_TRYBB (P12861) Heat shock protein 83|
          Length = 703

 Score = 38.5 bits (88), Expect = 0.014
 Identities = 22/55 (40%), Positives = 33/55 (60%)
 Frame = +3

Query: 105 HLQQQKLIELIRVGKINEALEFAQEELAPRGEENQAFLEEIEKTVALLVFEDVKN 269
           +LQQ K++++IR   + +ALE   EELA   E+ + F E+  K V L + ED  N
Sbjct: 377 NLQQNKILKVIRKNIVKKALELF-EELAGNKEDYKKFYEQFSKNVKLGIHEDSTN 430

>RANB9_MOUSE (P69566) Ran-binding protein 9 (RanBP9) (Ran-binding protein M)|
           (RanBPM) (B cell antigen receptor Ig beta-associated
           protein 1) (IBAP-1)
          Length = 653

 Score = 37.7 bits (86), Expect = 0.024
 Identities = 23/71 (32%), Positives = 35/71 (49%)
 Frame = +3

Query: 162 LEFAQEELAPRGEENQAFLEEIEKTVALLVFEDVKNCPYGELLDVSQRLKTASEVNAAIL 341
           L+   E+L     +N A  + ++   +LL + D  N P G  LD  QR    S +N+AIL
Sbjct: 551 LQAMSEQLRRECGKNTANKKMLKDAFSLLAYSDPWNSPVGNQLDPIQREPVCSALNSAIL 610

Query: 342 TSQSHEKDPKL 374
            + +  K P L
Sbjct: 611 ETHNLPKQPPL 621

>HSP85_TRYCR (P06660) Heat shock-like 85 kDa protein|
          Length = 704

 Score = 37.4 bits (85), Expect = 0.031
 Identities = 21/55 (38%), Positives = 33/55 (60%)
 Frame = +3

Query: 105 HLQQQKLIELIRVGKINEALEFAQEELAPRGEENQAFLEEIEKTVALLVFEDVKN 269
           +LQQ K++++IR   + +ALE   EE+A   E+ + F E+  K V L + ED  N
Sbjct: 377 NLQQNKILKVIRKNIVKKALELF-EEIAENKEDYKKFYEQFGKNVKLGIHEDSAN 430

>RANB9_HUMAN (Q96S59) Ran-binding protein 9 (RanBP9) (RanBP7) (Ran-binding|
           protein M) (RanBPM) (BPM90) (BPM-L)
          Length = 729

 Score = 37.0 bits (84), Expect = 0.041
 Identities = 23/71 (32%), Positives = 35/71 (49%)
 Frame = +3

Query: 162 LEFAQEELAPRGEENQAFLEEIEKTVALLVFEDVKNCPYGELLDVSQRLKTASEVNAAIL 341
           L+   E+L     +N A  + ++   +LL + D  N P G  LD  QR    S +N+AIL
Sbjct: 627 LQAMSEQLRRDCGKNTANKKMLKDAFSLLAYSDPWNSPVGNQLDPIQREPVCSALNSAIL 686

Query: 342 TSQSHEKDPKL 374
            + +  K P L
Sbjct: 687 ETHNLPKQPPL 697

>SYCP1_MESAU (Q60563) Synaptonemal complex protein 1 (SCP-1) (Meiotic chromosome|
           synaptic protein) (Fragment)
          Length = 845

 Score = 31.6 bits (70), Expect = 1.7
 Identities = 34/132 (25%), Positives = 53/132 (40%), Gaps = 4/132 (3%)
 Frame = +3

Query: 6   KKRFSQGNVQXGNRXRSTILTPRFWXTNPELYFHLQQQKLIELIRVGKINEALEFAQEEL 185
           K +    NV+  N+ +   LT     T   L   +  QK +E        E L+ A + +
Sbjct: 155 KTKLQDENVKELNKKKDH-LTSELEDTKMSLQRSMNTQKALE--------EDLQIATKTI 205

Query: 186 APRGEENQAFLEEIEKTV---ALLVFE-DVKNCPYGELLDVSQRLKTASEVNAAILTSQS 353
               EE +A +EE  K     + +V E     C   ELL   Q+    +E    ILT + 
Sbjct: 206 YQLTEEKEAQMEEFNKAKTDHSFMVTELKATTCTLEELLRTEQQRLVKNEDQLKILTMEL 265

Query: 354 HEKDPKLPSLLK 389
            +K  +L  + K
Sbjct: 266 QKKSNELDEMTK 277

>SYFB_UREPA (Q9PQ33) Phenylalanyl-tRNA synthetase beta chain (EC 6.1.1.20)|
           (Phenylalanine--tRNA ligase beta chain) (PheRS)
          Length = 772

 Score = 31.2 bits (69), Expect = 2.2
 Identities = 28/83 (33%), Positives = 40/83 (48%), Gaps = 8/83 (9%)
 Frame = +3

Query: 198 EENQAFLEEIEKTVA-LLVFEDVKNCPYGELLDVSQ-------RLKTASEVNAAILTSQS 353
           E N A+  + EK V+  LV + +  C    L + +Q         K A E+N      +S
Sbjct: 479 ENNLAY--DFEKKVSDFLVDQGLFECKTYNLKNQTQAHEFNFFNFKQAYEINNPTSNMRS 536

Query: 354 HEKDPKLPSLLKMLIWTQNQLNE 422
           H K   L SLL++L + QNQ NE
Sbjct: 537 HLKLNNLNSLLEVLEYNQNQKNE 559

>YG44_SCHPO (O60179) Hypothetical protein C23E6.04c in chromosome II|
          Length = 1649

 Score = 31.2 bits (69), Expect = 2.2
 Identities = 28/95 (29%), Positives = 43/95 (45%), Gaps = 5/95 (5%)
 Frame = +3

Query: 144 GKINEALEFAQEELAPRGEENQAFLEEIEKTVALLVFEDVKNC----PYGELLD-VSQRL 308
           GK+ +A     + L PR E+   F  E  KTV+    E + NC     +  LL  +S  +
Sbjct: 647 GKVEDA---KMQILLPRLEQLSEFNSEKFKTVSKREVEALVNCFNHTSFTSLLSFLSSNI 703

Query: 309 KTASEVNAAILTSQSHEKDPKLPSLLKMLIWTQNQ 413
             +  +   I+  QSH KDP+    +K +I    Q
Sbjct: 704 VLSQAICRRIVEIQSHLKDPQRLEFVKAVISQDEQ 738

>PVG4_SCHPO (Q9HGP0) MADS-box transcription factor pvg4 (Pyruvylated|
           Gal-beta-1,3-epitope synthesis protein 4) (PvGal
           synthesis protein 4) (MADS-box transcription factor 2)
          Length = 372

 Score = 30.8 bits (68), Expect = 2.9
 Identities = 14/37 (37%), Positives = 21/37 (56%)
 Frame = +1

Query: 436 PGSITCPPPHWKIQQYELLPKVFSVDYGA*APPAAMS 546
           PG+  CPP  ++    +L P++F V  G+  PP A S
Sbjct: 286 PGNPACPPFLYEHPNPQLTPEMFDVKQGSPIPPTAYS 322

>GID8_YEAST (P40208) Glucose-induced degradation protein 8 (Dosage-dependent|
           cell cycle regulator 1)
          Length = 455

 Score = 30.4 bits (67), Expect = 3.8
 Identities = 34/139 (24%), Positives = 56/139 (40%), Gaps = 9/139 (6%)
 Frame = +3

Query: 60  ILTPRFWXTNPELYFHLQQQKLIELIRVGKINEALEFAQEELAPRGEENQAFLEEIEKTV 239
           I+T  F   N  L       K+  +     INE +   +   A     N  +L + +  V
Sbjct: 323 IITQNFTVYNNNLVNGSNGTKITHISSDQPINEKMSSNEVTAAA----NSVWLNQRDGNV 378

Query: 240 ----ALLVFEDVKNCPY----GELLDVSQRLKTASEVNAAILTSQSHEKDPKLPSLLKML 395
               A   F +++N  Y     ELL  S   +   E N    +   +E  P+L  ++K+ 
Sbjct: 379 GTGSAATTFHNLENKNYWNQTSELLSSSNGKEKGLEFNNYYSSEFPYE--PRLTQIMKLW 436

Query: 396 IWTQNQL-NEKAAYPRINN 449
            W +NQL + +   PR+ N
Sbjct: 437 CWCENQLHHNQIGVPRVEN 455

>HSP90_PODAN (O43109) Heat shock protein 90 homolog (Suppressor of vegetative|
           incompatibility MOD-E)
          Length = 701

 Score = 30.4 bits (67), Expect = 3.8
 Identities = 18/54 (33%), Positives = 29/54 (53%)
 Frame = +3

Query: 108 LQQQKLIELIRVGKINEALEFAQEELAPRGEENQAFLEEIEKTVALLVFEDVKN 269
           LQQ K++++IR   + +ALE    E+A   E+   F     K + L + ED +N
Sbjct: 375 LQQNKIMKVIRKNIVKKALELF-TEIAEDKEQFDKFYTAFSKNIKLGIHEDSQN 427

>RS17_STRAW (Q82DN6) 30S ribosomal protein S17|
          Length = 94

 Score = 30.4 bits (67), Expect = 3.8
 Identities = 14/39 (35%), Positives = 26/39 (66%)
 Frame = +3

Query: 219 EEIEKTVALLVFEDVKNCPYGELLDVSQRLKTASEVNAA 335
           ++++KTV + V + VK+  YG+++  + +LK   E NAA
Sbjct: 26  DKMDKTVVVAVEDRVKHALYGKVIRRTNKLKAHDEQNAA 64

>RS17_NEIG1 (Q5F5T6) 30S ribosomal protein S17|
          Length = 87

 Score = 30.0 bits (66), Expect = 5.0
 Identities = 21/75 (28%), Positives = 38/75 (50%), Gaps = 5/75 (6%)
 Frame = +3

Query: 219 EEIEKTVALLVFEDVKNCPYGELLDVSQRLKTASEVNA-----AILTSQSHEKDPKLPSL 383
           ++++KTV +LV   VK+  YG+++ +S ++    E N       ++ S+S         L
Sbjct: 17  DKMDKTVTVLVERKVKHSLYGKIIRLSTKIHAHDENNQYGIGDVVVISESR-------PL 69

Query: 384 LKMLIWTQNQLNEKA 428
            K   W  ++L EKA
Sbjct: 70  SKTKSWVVSELVEKA 84

>PTP3_ENCCU (Q8MTP3) Polar tube protein 3 precursor|
          Length = 1256

 Score = 30.0 bits (66), Expect = 5.0
 Identities = 22/94 (23%), Positives = 42/94 (44%)
 Frame = +3

Query: 114 QQKLIELIRVGKINEALEFAQEELAPRGEENQAFLEEIEKTVALLVFEDVKNCPYGELLD 293
           Q++ ++  +    N A++ A+E LA   E  Q  +    K+V   V E           D
Sbjct: 517 QKEAVKAQKEANENSAVKSAEEHLAKAAE--QQIINNEGKSVFSKVLESTG--------D 566

Query: 294 VSQRLKTASEVNAAILTSQSHEKDPKLPSLLKML 395
           +S+  K   E   A+  +  H+++ +   ++KML
Sbjct: 567 ISEAAKAREEAERAMAETLRHQREARKAEVMKML 600

>AKAP9_HUMAN (Q99996) A-kinase anchor protein 9 (Protein kinase A-anchoring|
            protein 9) (PRKA9) (A-kinase anchor protein 450 kDa)
            (AKAP 450) (A-kinase anchor protein 350 kDa) (AKAP 350)
            (hgAKAP 350) (AKAP 120-like protein) (Hyperion protein)
            (Yotiao protei
          Length = 3911

 Score = 30.0 bits (66), Expect = 5.0
 Identities = 24/96 (25%), Positives = 44/96 (45%), Gaps = 12/96 (12%)
 Frame = +3

Query: 99   YFHLQQQKLIELIRVGKINEALE--------FAQEELAPRGEENQAFLEEIEKTVALLV- 251
            +  L+Q+K  EL+ + + N+ALE        F  E+   R  E   F +EI+K    L  
Sbjct: 2049 FIELEQEKNTELMDLRQQNQALEKQLEKMRKFLDEQAIDREHERDVFQQEIQKLEQQLKV 2108

Query: 252  ---FEDVKNCPYGELLDVSQRLKTASEVNAAILTSQ 350
               F+ +      E+  ++  LK  ++  + +L S+
Sbjct: 2109 VPRFQPISEHQTREVEQLANHLKEKTDKCSELLLSK 2144

>YPD1_CAEEL (P48053) Hypothetical protein C05D11.1 in chromosome III|
          Length = 995

 Score = 29.6 bits (65), Expect = 6.5
 Identities = 27/118 (22%), Positives = 49/118 (41%), Gaps = 3/118 (2%)
 Frame = +3

Query: 75  FWXTNPELYFHLQQQKLIELIRVGKINEALEFAQEELAPRGEE-NQAFLEEIEKTVALLV 251
           +W      YF      +I +     +++  E  ++ +A + E+  +  LEE  K++   +
Sbjct: 435 YWVQLVNKYFTAPSATVIGVPNEELVDKIAEEEEKRIAAQCEKLGKKGLEEAGKSLEAAI 494

Query: 252 FEDVKNCPYGELLD--VSQRLKTASEVNAAILTSQSHEKDPKLPSLLKMLIWTQNQLN 419
            E+  N P  ELLD  + + L+         LTS S    P+  + L    +  N  N
Sbjct: 495 LENTANHPSAELLDQLIVKDLEAFDRFPVQSLTSNSPSLTPQQSTFLAQFPFHANLHN 552

>ITB4_HUMAN (P16144) Integrin beta-4 precursor (GP150) (CD104 antigen)|
          Length = 1822

 Score = 29.6 bits (65), Expect = 6.5
 Identities = 16/41 (39%), Positives = 22/41 (53%)
 Frame = -3

Query: 495  GQQLILLDLPVRRWTSY*SGDMLPSRSAGFESRSASSTGWG 373
            G +L  L++P    TS    D+LP+ S  F  R+ S  GWG
Sbjct: 1569 GGELHRLNIPNPAQTSVVVEDLLPNHSYVFRVRAQSQEGWG 1609

>RS17_PROAC (Q6A6N5) 30S ribosomal protein S17|
          Length = 90

 Score = 29.6 bits (65), Expect = 6.5
 Identities = 20/70 (28%), Positives = 37/70 (52%)
 Frame = +3

Query: 219 EEIEKTVALLVFEDVKNCPYGELLDVSQRLKTASEVNAAILTSQSHEKDPKLPSLLKMLI 398
           +++ KT+ ++V + VK+  YG+++  S RLK   E N A +  +    + +  S  K   
Sbjct: 22  DKMNKTITVMVEDRVKHPLYGKVMTKSVRLKAHDENNEAGMGDRVRIMETRPLSATKR-- 79

Query: 399 WTQNQLNEKA 428
           W   ++ EKA
Sbjct: 80  WRLVEIIEKA 89

>RS17_NEIMB (Q7DDT3) 30S ribosomal protein S17|
          Length = 87

 Score = 29.3 bits (64), Expect = 8.5
 Identities = 21/75 (28%), Positives = 38/75 (50%), Gaps = 5/75 (6%)
 Frame = +3

Query: 219 EEIEKTVALLVFEDVKNCPYGELLDVSQRLKTASEVNA-----AILTSQSHEKDPKLPSL 383
           ++++KTV +LV   VK+  YG+++ +S ++    E N       ++ S+S         L
Sbjct: 17  DKMDKTVTVLVERKVKHPLYGKIIRLSTKIHAHDENNQYGIGDVVVISESR-------PL 69

Query: 384 LKMLIWTQNQLNEKA 428
            K   W  ++L EKA
Sbjct: 70  SKTKSWVVSELVEKA 84

>RS17_NEIMA (Q9JQL7) 30S ribosomal protein S17|
          Length = 87

 Score = 29.3 bits (64), Expect = 8.5
 Identities = 21/75 (28%), Positives = 38/75 (50%), Gaps = 5/75 (6%)
 Frame = +3

Query: 219 EEIEKTVALLVFEDVKNCPYGELLDVSQRLKTASEVNA-----AILTSQSHEKDPKLPSL 383
           ++++KTV +LV   VK+  YG+++ +S ++    E N       ++ S+S         L
Sbjct: 17  DKMDKTVTVLVERKVKHPLYGKIIRLSTKIHAHDENNQYGIGDVVVISESR-------PL 69

Query: 384 LKMLIWTQNQLNEKA 428
            K   W  ++L EKA
Sbjct: 70  SKTKSWVVSELVEKA 84

>SYCP1_HUMAN (Q15431) Synaptonemal complex protein 1 (SCP-1)|
          Length = 976

 Score = 29.3 bits (64), Expect = 8.5
 Identities = 24/95 (25%), Positives = 40/95 (42%), Gaps = 4/95 (4%)
 Frame = +3

Query: 150 INEALEFAQEELAPRGEENQAFLEEIEKTVALLVFE----DVKNCPYGELLDVSQRLKTA 317
           + E L+ A + +    EE +  +EE  K  A   F     +   C   ELL   Q+    
Sbjct: 341 LEEDLQIATKTICQLTEEKETQMEESNKARAAHSFVVTEFETTVCSLEELLRTEQQRLEK 400

Query: 318 SEVNAAILTSQSHEKDPKLPSLLKMLIWTQNQLNE 422
           +E    ILT +  +K  +L  + K+    + +L E
Sbjct: 401 NEDQLKILTMELQKKSSELEEMTKLTNNKEVELEE 435

>KU80_YEAST (Q04437) Yeast Ku80 protein (High affinity DNA-binding factor|
           subunit 2)
          Length = 629

 Score = 29.3 bits (64), Expect = 8.5
 Identities = 27/102 (26%), Positives = 46/102 (45%), Gaps = 2/102 (1%)
 Frame = +3

Query: 90  PELYFHLQQQKLIELIRVGKINEALEFAQEELAPRGEENQAFLEEIEKTVALLVFEDVKN 269
           P ++ + QQQ L+E I    IN++ EF   EL           + ++  ++    +   +
Sbjct: 527 PTVFVYRQQQVLLEWIHQLMINDSREFEIPELP----------DSLKNKISPYTHKKFDS 576

Query: 270 CPYGELLDVSQ--RLKTASEVNAAILTSQSHEKDPKLPSLLK 389
               E+L + +  +LK  SE+     T    EK P L +LLK
Sbjct: 577 TKLVEVLGIKKVDKLKLDSELK----TELEREKIPDLETLLK 614


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.318    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 77,775,757
Number of Sequences: 219361
Number of extensions: 1502109
Number of successful extensions: 4634
Number of sequences better than 10.0: 24
Number of HSP's better than 10.0 without gapping: 4460
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 4626
length of database: 80,573,946
effective HSP length: 106
effective length of database: 57,321,680
effective search space used: 4929664480
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)