ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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| Clone Name | bags7p23 |
|---|---|
| Clone Library Name | barley_pub |
>ref|XM_473919.1| Oryza sativa (japonica cultivar-group), predicted mRNA Length = 4887 Score = 389 bits (196), Expect = e-105 Identities = 401/469 (85%), Gaps = 3/469 (0%) Strand = Plus / Plus Query: 17 gtgctttctccagnatggttcagagtacaggacctagcaatgcagaatatcttaagtctc 76 |||||||||||| |||||||||||||||||||||||||||||||| || || ||| ||| Sbjct: 4415 gtgctttctccaagatggttcagagtacaggacctagcaatgcagagtacctgaagactc 4474 Query: 77 ttgtgcttgggaatggtgaagagaggctgcgaaaggaagaaagtaagttgcaagatattc 136 |||| ||||| ||||||| |||||| |||||||||||||||| ||| |||||||||| | Sbjct: 4475 ttgtatttggggatggtgaggagaggttgcgaaaggaagaaagcaagatgcaagatatcc 4534 Query: 137 agaggaaatgggctgcgtcgaaccgatgggctgttgctgcccagtttgcgcttgctgcta 196 ||||||| |||| || || |||||||||||||||||||| |||||||||||||| |||| Sbjct: 4535 agaggaagtgggtagcatctaaccgatgggctgttgctgcgcagtttgcgcttgccgcta 4594 Query: 197 gcctcgcgtcatcccacagtgaccttctctcgttggaggttgccgagggaaacagcatcc 256 |||| || || || |||||||||||||| | |||||| ||| |||||||||| ||||| Sbjct: 4595 gccttgcctcttcacacagtgaccttcttgcactggaggctgctgagggaaacaacatcc 4654 Query: 257 tcaggaaaacaaaggacgcagtaatcaccctgcagagcgtccttgaagggaagcacaaca 316 |||||||||||||||| ||||||||||| || |||| ||||| |||||||||||||||| Sbjct: 4655 tcaggaaaacaaaggatgcagtaatcactctacagaatgtcctcgaagggaagcacaaca 4714 Query: 317 ccgaaatcgaggagtcactcactgagtatcaggttccacctgataggtggtggtcgtcac 376 ||||||| || || ||||| || ||||| |||||||| |||||||||||||||| || | Sbjct: 4715 ccgaaattgatgatacactcgctcagtatgaggttccatctgataggtggtggtcatcgc 4774 Query: 377 tttacaaagtcatcgaaggcctcgccacgatgagcaaactgggtcgcaaccgt---cggc 433 | ||||||||||| ||||| || |||| ||||||| | |||||||||||||| | || Sbjct: 4775 tatacaaagtcatggaaggacttgccatgatgagccgattgggtcgcaaccgtctacagc 4834 Query: 434 aacctggttacagttttgaaaaccacgggtctattgactgggatcaaat 482 |||| |||| | |||||||||| || | |||||||||||||| ||||| Sbjct: 4835 aaccaagttataattttgaaaacaacagttctattgactgggaccaaat 4883
>emb|AL662970.2|OSJN00174 Oryza sativa genomic DNA, chromosome 4, BAC clone: OSJNBa0058K23, complete sequence Length = 164805 Score = 289 bits (146), Expect = 5e-75 Identities = 278/322 (86%) Strand = Plus / Minus Query: 74 ctcttgtgcttgggaatggtgaagagaggctgcgaaaggaagaaagtaagttgcaagata 133 ||||||| ||||| ||||||| |||||| |||||||||||||||| ||| ||||||||| Sbjct: 115668 ctcttgtatttggggatggtgaggagaggttgcgaaaggaagaaagcaagatgcaagata 115609 Query: 134 ttcagaggaaatgggctgcgtcgaaccgatgggctgttgctgcccagtttgcgcttgctg 193 | |||||||| |||| || || |||||||||||||||||||| |||||||||||||| | Sbjct: 115608 tccagaggaagtgggtagcatctaaccgatgggctgttgctgcgcagtttgcgcttgccg 115549 Query: 194 ctagcctcgcgtcatcccacagtgaccttctctcgttggaggttgccgagggaaacagca 253 ||||||| || || || |||||||||||||| | |||||| ||| |||||||||| || Sbjct: 115548 ctagccttgcctcttcacacagtgaccttcttgcactggaggctgctgagggaaacaaca 115489 Query: 254 tcctcaggaaaacaaaggacgcagtaatcaccctgcagagcgtccttgaagggaagcaca 313 ||||||||||||||||||| ||||||||||| || |||| ||||| ||||||||||||| Sbjct: 115488 tcctcaggaaaacaaaggatgcagtaatcactctacagaatgtcctcgaagggaagcaca 115429 Query: 314 acaccgaaatcgaggagtcactcactgagtatcaggttccacctgataggtggtggtcgt 373 |||||||||| || || ||||| || ||||| |||||||| |||||||||||||||| | Sbjct: 115428 acaccgaaattgatgatacactcgctcagtatgaggttccatctgataggtggtggtcat 115369 Query: 374 cactttacaaagtcatcgaagg 395 | || ||||||||||| ||||| Sbjct: 115368 cgctatacaaagtcatggaagg 115347 Score = 77.8 bits (39), Expect = 3e-11 Identities = 44/46 (95%) Strand = Plus / Minus Query: 17 gtgctttctccagnatggttcagagtacaggacctagcaatgcaga 62 |||||||||||| |||||||||||||||||||||||||||||||| Sbjct: 115914 gtgctttctccaagatggttcagagtacaggacctagcaatgcaga 115869 Score = 40.1 bits (20), Expect = 7.5 Identities = 58/70 (82%), Gaps = 3/70 (4%) Strand = Plus / Minus Query: 416 tgggtcgcaaccgt---cggcaacctggttacagttttgaaaaccacgggtctattgact 472 |||||||||||||| | |||||| |||| | |||||||||| || | |||||||||| Sbjct: 114952 tgggtcgcaaccgtctacagcaaccaagttataattttgaaaacaacagttctattgact 114893 Query: 473 gggatcaaat 482 |||| ||||| Sbjct: 114892 gggaccaaat 114883
>dbj|AP008210.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 4, complete sequence Length = 35498469 Score = 289 bits (146), Expect = 5e-75 Identities = 278/322 (86%) Strand = Plus / Minus Query: 74 ctcttgtgcttgggaatggtgaagagaggctgcgaaaggaagaaagtaagttgcaagata 133 ||||||| ||||| ||||||| |||||| |||||||||||||||| ||| ||||||||| Sbjct: 31537985 ctcttgtatttggggatggtgaggagaggttgcgaaaggaagaaagcaagatgcaagata 31537926 Query: 134 ttcagaggaaatgggctgcgtcgaaccgatgggctgttgctgcccagtttgcgcttgctg 193 | |||||||| |||| || || |||||||||||||||||||| |||||||||||||| | Sbjct: 31537925 tccagaggaagtgggtagcatctaaccgatgggctgttgctgcgcagtttgcgcttgccg 31537866 Query: 194 ctagcctcgcgtcatcccacagtgaccttctctcgttggaggttgccgagggaaacagca 253 ||||||| || || || |||||||||||||| | |||||| ||| |||||||||| || Sbjct: 31537865 ctagccttgcctcttcacacagtgaccttcttgcactggaggctgctgagggaaacaaca 31537806 Query: 254 tcctcaggaaaacaaaggacgcagtaatcaccctgcagagcgtccttgaagggaagcaca 313 ||||||||||||||||||| ||||||||||| || |||| ||||| ||||||||||||| Sbjct: 31537805 tcctcaggaaaacaaaggatgcagtaatcactctacagaatgtcctcgaagggaagcaca 31537746 Query: 314 acaccgaaatcgaggagtcactcactgagtatcaggttccacctgataggtggtggtcgt 373 |||||||||| || || ||||| || ||||| |||||||| |||||||||||||||| | Sbjct: 31537745 acaccgaaattgatgatacactcgctcagtatgaggttccatctgataggtggtggtcat 31537686 Query: 374 cactttacaaagtcatcgaagg 395 | || ||||||||||| ||||| Sbjct: 31537685 cgctatacaaagtcatggaagg 31537664 Score = 77.8 bits (39), Expect = 3e-11 Identities = 44/46 (95%) Strand = Plus / Minus Query: 17 gtgctttctccagnatggttcagagtacaggacctagcaatgcaga 62 |||||||||||| |||||||||||||||||||||||||||||||| Sbjct: 31538231 gtgctttctccaagatggttcagagtacaggacctagcaatgcaga 31538186 Score = 40.1 bits (20), Expect = 7.5 Identities = 58/70 (82%), Gaps = 3/70 (4%) Strand = Plus / Minus Query: 416 tgggtcgcaaccgt---cggcaacctggttacagttttgaaaaccacgggtctattgact 472 |||||||||||||| | |||||| |||| | |||||||||| || | |||||||||| Sbjct: 31537269 tgggtcgcaaccgtctacagcaaccaagttataattttgaaaacaacagttctattgact 31537210 Query: 473 gggatcaaat 482 |||| ||||| Sbjct: 31537209 gggaccaaat 31537200
>emb|AJ535215.1|OSA535215 Oryza sativa (japonica cultivar-group) mrp1 gene for MRP-like ABC transporter, exons 1-28 Length = 11038 Score = 289 bits (146), Expect = 5e-75 Identities = 278/322 (86%) Strand = Plus / Plus Query: 74 ctcttgtgcttgggaatggtgaagagaggctgcgaaaggaagaaagtaagttgcaagata 133 ||||||| ||||| ||||||| |||||| |||||||||||||||| ||| ||||||||| Sbjct: 10249 ctcttgtatttggggatggtgaggagaggttgcgaaaggaagaaagcaagatgcaagata 10308 Query: 134 ttcagaggaaatgggctgcgtcgaaccgatgggctgttgctgcccagtttgcgcttgctg 193 | |||||||| |||| || || |||||||||||||||||||| |||||||||||||| | Sbjct: 10309 tccagaggaagtgggtagcatctaaccgatgggctgttgctgcgcagtttgcgcttgccg 10368 Query: 194 ctagcctcgcgtcatcccacagtgaccttctctcgttggaggttgccgagggaaacagca 253 ||||||| || || || |||||||||||||| | |||||| ||| |||||||||| || Sbjct: 10369 ctagccttgcctcttcacacagtgaccttcttgcactggaggctgctgagggaaacaaca 10428 Query: 254 tcctcaggaaaacaaaggacgcagtaatcaccctgcagagcgtccttgaagggaagcaca 313 ||||||||||||||||||| ||||||||||| || |||| ||||| ||||||||||||| Sbjct: 10429 tcctcaggaaaacaaaggatgcagtaatcactctacagaatgtcctcgaagggaagcaca 10488 Query: 314 acaccgaaatcgaggagtcactcactgagtatcaggttccacctgataggtggtggtcgt 373 |||||||||| || || ||||| || ||||| |||||||| |||||||||||||||| | Sbjct: 10489 acaccgaaattgatgatacactcgctcagtatgaggttccatctgataggtggtggtcat 10548 Query: 374 cactttacaaagtcatcgaagg 395 | || ||||||||||| ||||| Sbjct: 10549 cgctatacaaagtcatggaagg 10570 Score = 77.8 bits (39), Expect = 3e-11 Identities = 44/46 (95%) Strand = Plus / Plus Query: 17 gtgctttctccagnatggttcagagtacaggacctagcaatgcaga 62 |||||||||||| |||||||||||||||||||||||||||||||| Sbjct: 10003 gtgctttctccaagatggttcagagtacaggacctagcaatgcaga 10048 Score = 40.1 bits (20), Expect = 7.5 Identities = 58/70 (82%), Gaps = 3/70 (4%) Strand = Plus / Plus Query: 416 tgggtcgcaaccgt---cggcaacctggttacagttttgaaaaccacgggtctattgact 472 |||||||||||||| | |||||| |||| | |||||||||| || | |||||||||| Sbjct: 10965 tgggtcgcaaccgtctacagcaaccaagttataattttgaaaacaacagttctattgact 11024 Query: 473 gggatcaaat 482 |||| ||||| Sbjct: 11025 gggaccaaat 11034
>gb|AC146014.2| Pan troglodytes BAC clone RP43-128N21 from 7, complete sequence Length = 178714 Score = 42.1 bits (21), Expect = 1.9 Identities = 24/25 (96%) Strand = Plus / Minus Query: 61 gaatatcttaagtctcttgtgcttg 85 |||||||| |||||||||||||||| Sbjct: 69237 gaatatctcaagtctcttgtgcttg 69213
>gb|AC006381.2| Homo sapiens BAC clone RP11-494A9 from 7, complete sequence Length = 146720 Score = 42.1 bits (21), Expect = 1.9 Identities = 24/25 (96%) Strand = Plus / Minus Query: 61 gaatatcttaagtctcttgtgcttg 85 |||||||| |||||||||||||||| Sbjct: 22800 gaatatctcaagtctcttgtgcttg 22776
>gb|AC101391.15| Mus musculus chromosome 5, clone RP23-119E13, complete sequence Length = 209590 Score = 40.1 bits (20), Expect = 7.5 Identities = 20/20 (100%) Strand = Plus / Minus Query: 72 gtctcttgtgcttgggaatg 91 |||||||||||||||||||| Sbjct: 125687 gtctcttgtgcttgggaatg 125668
>emb|AL445687.5| Human DNA sequence from clone RP11-567B20 on chromosome 1 Contains a NADH dehydrogenase (ubiquinone) 1 alpha subcomplex 4 9kDa (NDUFA4) pseudogene, a phosphatidylinositol transfer protein cytoplasmic 1 (PITPNC1) pseudogene and contains two CpG islands, complete sequence Length = 168108 Score = 40.1 bits (20), Expect = 7.5 Identities = 20/20 (100%) Strand = Plus / Minus Query: 128 aagatattcagaggaaatgg 147 |||||||||||||||||||| Sbjct: 28767 aagatattcagaggaaatgg 28748
>ref|XM_790555.1| PREDICTED: Strongylocentrotus purpuratus similar to sulfotransferase family, cytosolic, 1A, phenol-preferring, member 3 (LOC590970), mRNA Length = 953 Score = 40.1 bits (20), Expect = 7.5 Identities = 20/20 (100%) Strand = Plus / Minus Query: 6 acgaggggacggtgctttct 25 |||||||||||||||||||| Sbjct: 374 acgaggggacggtgctttct 355
>gb|AC151985.2| Mus musculus BAC clone RP23-381C14 from chromosome 5, complete sequence Length = 204862 Score = 40.1 bits (20), Expect = 7.5 Identities = 20/20 (100%) Strand = Plus / Minus Query: 72 gtctcttgtgcttgggaatg 91 |||||||||||||||||||| Sbjct: 55037 gtctcttgtgcttgggaatg 55018
>gb|AC005170.3| Arabidopsis thaliana chromosome 2 clone T29E15 map CIC06C07, complete sequence Length = 108056 Score = 40.1 bits (20), Expect = 7.5 Identities = 20/20 (100%) Strand = Plus / Plus Query: 488 tgttgaacactggcattgca 507 |||||||||||||||||||| Sbjct: 29575 tgttgaacactggcattgca 29594
>gb|AC097263.6| Homo sapiens X BAC RP11-298C3 (Roswell Park Cancer Institute Human BAC Library) complete sequence Length = 159325 Score = 40.1 bits (20), Expect = 7.5 Identities = 20/20 (100%) Strand = Plus / Plus Query: 128 aagatattcagaggaaatgg 147 |||||||||||||||||||| Sbjct: 107092 aagatattcagaggaaatgg 107111
>gb|AC090960.3| Homo sapiens chromosome 3 clone RP11-83E7 map 3p, complete sequence Length = 176744 Score = 40.1 bits (20), Expect = 7.5 Identities = 20/20 (100%) Strand = Plus / Plus Query: 52 agcaatgcagaatatcttaa 71 |||||||||||||||||||| Sbjct: 168186 agcaatgcagaatatcttaa 168205
>gb|AC090959.1|AC090959 Homo sapiens chromosome 3 clone RP11-80D24 map 3p, complete sequence Length = 163954 Score = 40.1 bits (20), Expect = 7.5 Identities = 20/20 (100%) Strand = Plus / Minus Query: 52 agcaatgcagaatatcttaa 71 |||||||||||||||||||| Sbjct: 127212 agcaatgcagaatatcttaa 127193
>ref|NM_001008070.1| Xenopus tropicalis MGC79705 protein (MGC79705), mRNA Length = 2135 Score = 40.1 bits (20), Expect = 7.5 Identities = 20/20 (100%) Strand = Plus / Plus Query: 490 ttgaacactggcattgcaat 509 |||||||||||||||||||| Sbjct: 1053 ttgaacactggcattgcaat 1072
>gb|AC097587.3| Sus scrofa clone RP44-50K20, complete sequence Length = 111967 Score = 40.1 bits (20), Expect = 7.5 Identities = 23/24 (95%) Strand = Plus / Minus Query: 94 gaagagaggctgcgaaaggaagaa 117 |||||||||||| ||||||||||| Sbjct: 88416 gaagagaggctgggaaaggaagaa 88393
>gb|BC080964.1| Xenopus tropicalis MGC79705 protein, mRNA (cDNA clone MGC:79705 IMAGE:6981086), complete cds Length = 2135 Score = 40.1 bits (20), Expect = 7.5 Identities = 20/20 (100%) Strand = Plus / Plus Query: 490 ttgaacactggcattgcaat 509 |||||||||||||||||||| Sbjct: 1053 ttgaacactggcattgcaat 1072 Database: nt Posted date: May 29, 2006 11:10 AM Number of letters in database: 3,984,495,279 Number of sequences in database: 917,343 Database: /shigen/export/home/twatanab/db/nt/nt.01 Posted date: May 29, 2006 11:16 AM Number of letters in database: 3,988,174,986 Number of sequences in database: 835,257 Database: /shigen/export/home/twatanab/db/nt/nt.02 Posted date: May 29, 2006 11:21 AM Number of letters in database: 3,991,246,324 Number of sequences in database: 771,481 Database: /shigen/export/home/twatanab/db/nt/nt.03 Posted date: May 29, 2006 11:27 AM Number of letters in database: 3,990,718,311 Number of sequences in database: 977,174 Database: /shigen/export/home/twatanab/db/nt/nt.04 Posted date: May 29, 2006 11:29 AM Number of letters in database: 1,278,410,368 Number of sequences in database: 400,813 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 4,160,952 Number of Sequences: 3902068 Number of extensions: 4160952 Number of successful extensions: 68589 Number of sequences better than 10.0: 17 Number of HSP's better than 10.0 without gapping: 17 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 68525 Number of HSP's gapped (non-prelim): 63 length of query: 550 length of database: 17,233,045,268 effective HSP length: 23 effective length of query: 527 effective length of database: 17,143,297,704 effective search space: 9034517890008 effective search space used: 9034517890008 T: 0 A: 0 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 20 (40.1 bits)
