Clone Information

BLAST Search Result

Clone Name	bags7p21
Clone Library Name	barley_pub

No.	Definition	Score (bits)	E Value
1	CDC20_HUMAN (Q12834) Cell division cycle protein 20 homolog (p55...	114	1e-25
2	CDC20_MOUSE (Q9JJ66) Cell division cycle protein 20 homolog (p55...	114	2e-25
3	CDC20_RAT (Q62623) Cell division cycle protein 20 homolog (p55CDC)	113	3e-25
4	SLP1_SCHPO (P78972) WD-repeat-containing protein slp1	91	3e-18
5	FZR_MOUSE (Q9R1K5) Fizzy-related protein homolog (Fzr) (Cdh1/Hct...	85	1e-16
6	FZR_HUMAN (Q9UM11) Fizzy-related protein homolog (Fzr) (Cdh1/Hct...	83	4e-16
7	MFR1_SCHPO (O94423) Meiotic fizzy-related protein 1	79	1e-14
8	CDC20_YEAST (P26309) APC/C activator protein CDC20 (Cell divisio...	76	6e-14
9	FZY1_CAEEL (Q09373) WD-repeat-containing protein fzy-1 (Fizzy pr...	66	5e-11
10	CDH1_YEAST (P53197) APC/C activator protein CDH1 (CDC20 homolog ...	65	1e-10
11	SRW1_SCHPO (O13286) WD-repeat-containing protein srw1 (Suppresso...	64	2e-10
12	YA98_SCHPO (Q09786) Hypothetical WD-repeat protein C13G6.08 in c...	50	5e-06
13	AMA1_YEAST (P50082) Meiosis-specific APC/C activator protein AMA...	48	2e-05
14	CORT_DROME (Q960N3) Protein cortex	36	0.056
15	YTFR_ECOLI (Q6BEX0) Hypothetical ABC transporter ATP-binding pro...	36	0.073
16	YTFR_ECO57 (P63299) Hypothetical ABC transporter ATP-binding pro...	36	0.073
17	Y1491_SYNY3 (P74598) Hypothetical WD-repeat protein sll1491	33	0.36
18	IFT80_HUMAN (Q9P2H3) Intraflagellar transport 80 homolog (WD-rep...	33	0.47
19	HETE1_PODAN (Q00808) Vegetatible incompatibility protein HET-E-1	33	0.47
20	IFT80_RAT (Q66HB3) Intraflagellar transport 80 homolog (WD-repea...	32	1.1
21	IFT80_MOUSE (Q8K057) Intraflagellar transport 80 homolog (WD-rep...	32	1.1
22	RIP_HUMAN (Q86UA6) RPA-interacting protein (hRIP)	32	1.4
23	NT3_HUMAN (P20783) Neurotrophin-3 precursor (NT-3) (Neurotrophic...	30	4.0
24	PRP4_YEAST (P20053) U4/U6 small nuclear ribonucleoprotein PRP4	30	4.0
25	YH92_CAEEL (Q23256) Hypothetical WD-repeat protein ZC302.2	30	4.0
26	AAAS_MOUSE (P58742) Aladin (Adracalin)	30	5.3
27	AAAS_HUMAN (Q9NRG9) Aladin (Adracalin)	29	6.9
28	WDR26_MOUSE (Q8C6G8) WD-repeat protein 26	29	6.9
29	WDR7_MOUSE (Q920I9) WD-repeat protein 7 (TGF-beta resistance-ass...	29	9.0
30	APAG_BORPE (Q7VU61) Protein apaG	29	9.0
31	APAG_BORPA (Q7W393) Protein apaG	29	9.0
32	APAG_BORBR (Q7WEL1) Protein apaG	29	9.0
33	PKWA_THECU (P49695) Probable serine/threonine-protein kinase pkw...	29	9.0
34	ZEP1_MOUSE (Q03172) Zinc finger protein 40 (Transcription factor...	29	9.0
35	WDR7_RAT (Q9ERH3) WD-repeat protein 7 (TGF-beta resistance-assoc...	29	9.0
36	PPAC_STRMU (O68579) Probable manganese-dependent inorganic pyrop...	29	9.0
37	HIRA_CHICK (P79987) HIRA protein (TUP1-like enhancer of split pr...	29	9.0
38	HIRA_DROME (O17468) HIRA protein homolog (dHIRA)	29	9.0
39	HAT2_USTMA (Q4P553) Histone acetyltransferase type B subunit 2 (...	29	9.0
40	WDR26_HUMAN (Q9H7D7) WD-repeat protein 26	29	9.0

>CDC20_HUMAN (Q12834) Cell division cycle protein 20 homolog (p55CDC)|
          Length = 499

 Score =  114 bits (286), Expect = 1e-25
 Identities = 69/179 (38%), Positives = 104/179 (58%), Gaps = 6/179 (3%)
 Frame = +3

Query: 6   STPRNPAVKCYGDRFIPDRSAMDMDMAHYLLTEPRKDSKNAVTPSPAKEAYRKLLAEKLL 185
           +TP  P     GDR+IP RSA  M++A +LL+   K+++   + +P K+ ++K  A  L 
Sbjct: 69  TTPSKPG----GDRYIPHRSAAQMEVASFLLS---KENQPENSQTPTKKEHQKAWALNLN 121

Query: 186 N---NRTRILAFRNKP---PEPENSMLMELHADAASIQARPVKKRRYIPQSAERTLDAPD 347
                  +IL    KP   PE   + L  L++  A+      K  RYIP   +R LDAP+
Sbjct: 122 GFDVEEAKILRLSGKPQNAPEGYQNRLKVLYSQKAT-PGSSRKTCRYIPSLPDRILDAPE 180

Query: 348 IVDDYYLNLLDWGSANVLSIALGNTVYLWDAASGSTSELVTIGEDDGPVTSVSWAPDGN 524
           I +DYYLNL+DW S NVL++AL N+VYLW A+SG   +L+ + +    ++SV+W  +GN
Sbjct: 181 IRNDYYLNLVDWSSGNVLAVALDNSVYLWSASSGDILQLLQMEQPGEYISSVAWIKEGN 239

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>CDC20_MOUSE (Q9JJ66) Cell division cycle protein 20 homolog (p55CDC) (mmCdc20)|
          Length = 499

 Score =  114 bits (285), Expect = 2e-25
 Identities = 69/179 (38%), Positives = 103/179 (57%), Gaps = 6/179 (3%)
 Frame = +3

Query: 6   STPRNPAVKCYGDRFIPDRSAMDMDMAHYLLTEPRKDSKNAVTPSPAKEAYRKLLAEKLL 185
           +TP  P     GDRFIP RSA  M++A +LL+   K+++     +P K+ ++K  +  L 
Sbjct: 69  TTPSKPG----GDRFIPQRSASQMEVASFLLS---KENQPEDRGTPTKKEHQKAWSLNLN 121

Query: 186 N---NRTRILAFRNKP---PEPENSMLMELHADAASIQARPVKKRRYIPQSAERTLDAPD 347
                  +IL    KP   PE   + L  L++  A+      K  RYIP   +R LDAP+
Sbjct: 122 GFDVEEAKILRLSGKPQNAPEGYQNRLKVLYSQKAT-PGSSRKTCRYIPSLPDRILDAPE 180

Query: 348 IVDDYYLNLLDWGSANVLSIALGNTVYLWDAASGSTSELVTIGEDDGPVTSVSWAPDGN 524
           I +DYYLNL+DW S NVL++AL N+VYLW+A SG   +L+ + +    ++SV+W  +GN
Sbjct: 181 IRNDYYLNLVDWSSGNVLAVALDNSVYLWNAGSGDILQLLQMEQPGDYISSVAWIKEGN 239

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>CDC20_RAT (Q62623) Cell division cycle protein 20 homolog (p55CDC)|
          Length = 499

 Score =  113 bits (283), Expect = 3e-25
 Identities = 67/179 (37%), Positives = 101/179 (56%), Gaps = 6/179 (3%)
 Frame = +3

Query: 6   STPRNPAVKCYGDRFIPDRSAMDMDMAHYLLTEPRKDSKNAVTPSPAKEAYRKLLAEKLL 185
           +TP  P     G+R+IP RSA  M++A +LL++  +        +P K+ ++K  A  L 
Sbjct: 69  TTPSKPG----GERYIPQRSASQMEVASFLLSKENQPEDGG---TPTKKEHQKAWARNLN 121

Query: 186 N---NRTRILAFRNKP---PEPENSMLMELHADAASIQARPVKKRRYIPQSAERTLDAPD 347
                  +IL    KP   PE   + L  L++  A+      K  RYIP   +R LDAP+
Sbjct: 122 GFDVEEAKILRLSGKPQNAPEGYQNRLKVLYSQKAT-PGSSRKACRYIPSLPDRILDAPE 180

Query: 348 IVDDYYLNLLDWGSANVLSIALGNTVYLWDAASGSTSELVTIGEDDGPVTSVSWAPDGN 524
           I +DYYLNL+DW S NVL++AL N+VYLW+A SG   +L+ + +    ++SV+W  +GN
Sbjct: 181 IRNDYYLNLVDWSSGNVLAVALDNSVYLWNAGSGDILQLLQMEQPGDYISSVAWIKEGN 239

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>SLP1_SCHPO (P78972) WD-repeat-containing protein slp1|
          Length = 488

 Score = 90.5 bits (223), Expect = 3e-18
 Identities = 65/181 (35%), Positives = 91/181 (50%), Gaps = 7/181 (3%)
 Frame = +3

Query: 3   CSTPRN---PAVKCYGDRFIPDRSAMDMDMAHYLLTEPRKDSKNAVTPSPAKEA---YRK 164
           C +PRN   PA +   DRFIP R                 ++ NA   S + +    Y +
Sbjct: 74  CGSPRNKSRPASR--SDRFIPSRP----------------NTANAFVNSISSDVPFDYSE 115

Query: 165 LLAEKL-LNNRTRILAFRNKPPEPENSMLMELHADAASIQARPVKKRRYIPQSAERTLDA 341
            +AE    +  TR+LAF+   PE +  + +    +          KRR+   + ER LDA
Sbjct: 116 SVAEACGFDLNTRVLAFKLDAPEAKKPVDLRTQHNRPQRPVVTPAKRRF-NTTPERVLDA 174

Query: 342 PDIVDDYYLNLLDWGSANVLSIALGNTVYLWDAASGSTSELVTIGEDDGPVTSVSWAPDG 521
           P I+DDYYLNLLDW + NV+++AL   VY+W+A SGS S L    E    V SV W+ DG
Sbjct: 175 PGIIDDYYLNLLDWSNLNVVAVALERNVYVWNADSGSVSALAETDEST-YVASVKWSHDG 233

Query: 522 N 524
           +
Sbjct: 234 S 234

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>FZR_MOUSE (Q9R1K5) Fizzy-related protein homolog (Fzr) (Cdh1/Hct1 homolog)|
          Length = 493

 Score = 84.7 bits (208), Expect = 1e-16
 Identities = 62/211 (29%), Positives = 90/211 (42%), Gaps = 39/211 (18%)
 Frame = +3

Query: 9   TPRNPAVKC---YGDRFIPDRSAMDMDMAHYLLTEPRKD-SKNAVTPSPAKE------AY 158
           TP N  V     +GDRFIP R+  +  +  + + E  K  S+N        +      AY
Sbjct: 32  TPANSPVSSPSKHGDRFIPSRAGANWSVNFHRINENEKSPSQNRKAKDATSDNGKDGLAY 91

Query: 159 RKLLAEKLLNNR-------------------------TRILAFRNKPPEPENSM----LM 251
             LL  +LL                            T  L+ +   P+  N +    L 
Sbjct: 92  SALLKNELLGAGIEKVQDPQTEDRRLQPSTPEHKGLFTYSLSSKRSSPDDGNDVSPYSLS 151

Query: 252 ELHADAASIQARPVKKRRYIPQSAERTLDAPDIVDDYYLNLLDWGSANVLSIALGNTVYL 431
            +   +  +   P K  R I +   + LDAP++ DD+YLNL+DW S NVLS+ LG  VYL
Sbjct: 152 PVSNKSQKLLRSPRKPTRKISKIPFKVLDAPELQDDFYLNLVDWSSLNVLSVGLGTCVYL 211

Query: 432 WDAASGSTSELVTIGEDDGPVTSVSWAPDGN 524
           W A +   + L  +  +   VTSV W+  GN
Sbjct: 212 WSACTSQVTRLCDLSVEGDSVTSVGWSERGN 242

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>FZR_HUMAN (Q9UM11) Fizzy-related protein homolog (Fzr) (Cdh1/Hct1 homolog)|
           (hCDH1) (CDC20-like protein 1)
          Length = 496

 Score = 83.2 bits (204), Expect = 4e-16
 Identities = 58/199 (29%), Positives = 86/199 (43%), Gaps = 36/199 (18%)
 Frame = +3

Query: 36  YGDRFIPDRSAMDMDMAHYLLTEPRKD-SKNAVTPSPAKE------AYRKLLAEKLLNNR 194
           +GDRFIP R+  +  +  + + E  K  S+N        +      AY  LL  +LL   
Sbjct: 44  HGDRFIPSRAGANWSVNFHRINENEKSPSQNRKAKDATSDNGKDGLAYSALLKNELLGAG 103

Query: 195 -------------------------TRILAFRNKPPEPENSM----LMELHADAASIQAR 287
                                    T  L+ +   P+  N +    L  +   +  +   
Sbjct: 104 IEKVQDPQTEDRRLQPSTPEKKGLFTYSLSTKRSSPDDGNDVSPYSLSPVSNKSQKLLRS 163

Query: 288 PVKKRRYIPQSAERTLDAPDIVDDYYLNLLDWGSANVLSIALGNTVYLWDAASGSTSELV 467
           P K  R I +   + LDAP++ DD+YLNL+DW S NVLS+ LG  VYLW A +   + L 
Sbjct: 164 PRKPTRKISKIPFKVLDAPELQDDFYLNLVDWSSLNVLSVGLGTCVYLWSACTSQVTRLC 223

Query: 468 TIGEDDGPVTSVSWAPDGN 524
            +  +   VTSV W+  GN
Sbjct: 224 DLSVEGDSVTSVGWSERGN 242

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>MFR1_SCHPO (O94423) Meiotic fizzy-related protein 1|
          Length = 421

 Score = 78.6 bits (192), Expect = 1e-14
 Identities = 38/99 (38%), Positives = 60/99 (60%)
 Frame = +3

Query: 225 PEPENSMLMELHADAASIQARPVKKRRYIPQSAERTLDAPDIVDDYYLNLLDWGSANVLS 404
           P+ ++  L  +   +  +  +P K +R  P++  + LDAP + +D+YLNLLDWG +NVL+
Sbjct: 81  PDRKSYSLSPISPQSQDMLRQPQKPKRAFPKTPYKILDAPYLKNDFYLNLLDWGQSNVLA 140

Query: 405 IALGNTVYLWDAASGSTSELVTIGEDDGPVTSVSWAPDG 521
           + L +++YLW AASG   +L   G  +  VTSV W   G
Sbjct: 141 VGLASSIYLWSAASGKVVQLHDFGATN-HVTSVLWTGKG 178

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>CDC20_YEAST (P26309) APC/C activator protein CDC20 (Cell division control|
           protein 20)
          Length = 610

 Score = 75.9 bits (185), Expect = 6e-14
 Identities = 54/172 (31%), Positives = 87/172 (50%), Gaps = 13/172 (7%)
 Frame = +3

Query: 42  DRFIP-----DRSAMDMDMAHYLLTEPRKDSKNAVTPSPAKEAYRKLLAEKL-LNNRTRI 203
           DR+IP      ++ +D +  H  L  P     + +  +  K  +++ +AE   L+   RI
Sbjct: 144 DRYIPILQGASQNKVDPETLHEALPPPNASPISHLR-AQTKIVFKQNVAEACGLDMNKRI 202

Query: 204 LAFRNKPPE----PENSMLMELHADAASIQARPVK---KRRYIPQSAERTLDAPDIVDDY 362
           L +  +PP+     + S +M+     +  Q + +    K R I  + ER LDAP   DD+
Sbjct: 203 LQYMPEPPKCSSLRQKSYIMKKRTHYSYQQEQKIPDLIKLRKINTNPERILDAPGFQDDF 262

Query: 363 YLNLLDWGSANVLSIALGNTVYLWDAASGSTSELVTIGEDDGPVTSVSWAPD 518
           YLNLL W   NVL+IAL   +YLW+A +G  S L     ++  + SV+W+ D
Sbjct: 263 YLNLLSWSKKNVLAIALDTALYLWNATTGDVSLLTDF--ENTTICSVTWSDD 312

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>FZY1_CAEEL (Q09373) WD-repeat-containing protein fzy-1 (Fizzy protein 1)|
          Length = 507

 Score = 66.2 bits (160), Expect = 5e-11
 Identities = 56/196 (28%), Positives = 88/196 (44%), Gaps = 29/196 (14%)
 Frame = +3

Query: 21  PAVKCYGDRFIPDRSAMD-MDMAHYLLT---------------EPRKDSKNAVTPSPAKE 152
           P     GDRF+  R   D +D A++L+T               EP    K +V     K+
Sbjct: 41  PNATFVGDRFLGVRLDQDELDHANHLMTSKLYSNKENLNNSMSEPNSPEKKSVEGEALKQ 100

Query: 153 AYRKLLAEKLLN--NRTRILAFR-NKPPEPE----NSMLMELHADAASIQARPVKKR-RY 308
             R      L +  +  RIL ++ N  P P     N   +    ++    A  VKK  R+
Sbjct: 101 MMRHKSTGALTDADDGDRILCYKKNLAPPPAIGYINQAKVLYSTNSVINPASSVKKSTRH 160

Query: 309 IPQSAERTLDAPDIVDDYYLNLLDWGSANVLSIALGNTVYLWDAASGSTSELVTIGEDDG 488
           + ++A + LD P +  D Y   LDWG  N +++ALG+ +YLW+     T  +  + ED+ 
Sbjct: 161 VKETATKVLDGPGLTKDLYSRHLDWGCHNWVAVALGHELYLWNT---ETCVIKNLFEDNA 217

Query: 489 P-----VTSVSWAPDG 521
           P     +TSV W+ +G
Sbjct: 218 PTNEGLITSVRWSQEG 233

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>CDH1_YEAST (P53197) APC/C activator protein CDH1 (CDC20 homolog 1) (Homolog of|
           CDC twenty 1)
          Length = 566

 Score = 65.1 bits (157), Expect = 1e-10
 Identities = 31/87 (35%), Positives = 53/87 (60%)
 Frame = +3

Query: 264 DAASIQARPVKKRRYIPQSAERTLDAPDIVDDYYLNLLDWGSANVLSIALGNTVYLWDAA 443
           D+  +   P K+ R I +   R LDAP + DD+Y +L+DW S +VL++ALG +++L D  
Sbjct: 232 DSKQLLLSPGKQFRQIAKVPYRVLDAPSLADDFYYSLIDWSSTDVLAVALGKSIFLTD-- 289

Query: 444 SGSTSELVTIGEDDGPVTSVSWAPDGN 524
             +T ++V + + +   TS+SW   G+
Sbjct: 290 -NNTGDVVHLCDTENEYTSLSWIGAGS 315

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>SRW1_SCHPO (O13286) WD-repeat-containing protein srw1 (Suppressor of rad/wee1)|
          Length = 556

 Score = 64.3 bits (155), Expect = 2e-10
 Identities = 31/73 (42%), Positives = 41/73 (56%)
 Frame = +3

Query: 303 RYIPQSAERTLDAPDIVDDYYLNLLDWGSANVLSIALGNTVYLWDAASGSTSELVTIGED 482
           R +P    R LDAP +  D+YLNLLDWG  N+L++AL + VYLW   S   + +      
Sbjct: 232 RELPSIPYRVLDAPGLAGDFYLNLLDWGQCNMLAVALASRVYLWSGISSEVTVMHNFYPT 291

Query: 483 DGPVTSVSWAPDG 521
           D  VTS+ W   G
Sbjct: 292 D-TVTSLRWVQRG 303

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>YA98_SCHPO (Q09786) Hypothetical WD-repeat protein C13G6.08 in chromosome I|
          Length = 535

 Score = 49.7 bits (117), Expect = 5e-06
 Identities = 45/165 (27%), Positives = 71/165 (43%), Gaps = 4/165 (2%)
 Frame = +3

Query: 42  DRFIPDRSAMDMDMAHYLLTEPRKDSKNAVTPSP-AKEAYRKLLAEKLLNNRT-RILAFR 215
           DRFIP  S  D       L      S+N V  +  A E Y++LL   L   R   +  + 
Sbjct: 86  DRFIPMTSNKDT----ISLGRHSSLSRNLVNKTKNASETYQQLLEYALEVERDDNVFTYA 141

Query: 216 NKPPEPENSMLMELHADAASIQARPVKKRRYIPQSAE--RTLDAPDIVDDYYLNLLDWGS 389
                        + A     + +  +K+   P++    R LDAP++ DD+Y +LL W  
Sbjct: 142 KLQKSDMTQKCPTMVASEKDNKGKLNEKKNRSPENLLPFRILDAPELRDDFYTSLLSWSP 201

Query: 390 ANVLSIALGNTVYLWDAASGSTSELVTIGEDDGPVTSVSWAPDGN 524
              L+I L   +YLW    G T     + E    V+SV+++ +G+
Sbjct: 202 KGDLAIGLAENIYLWSKELGPTR---VLEESIYDVSSVAYSYNGD 243

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>AMA1_YEAST (P50082) Meiosis-specific APC/C activator protein AMA1 (Activator|
           of meiotic APC/C protein 1) (Sporulation-specific
           protein 70)
          Length = 593

 Score = 47.8 bits (112), Expect = 2e-05
 Identities = 36/109 (33%), Positives = 55/109 (50%), Gaps = 7/109 (6%)
 Frame = +3

Query: 210 FRNKPPEPENSMLMELHADAASIQA---RPVKK-RRYIPQSAERTLDAPDIVDDYYLNLL 377
           F    P+     +   +A +AS Q    RP K+ + +IP    R LDAP + +D+Y NL+
Sbjct: 178 FSTLSPDVARYYIANSNARSASPQRQIQRPAKRVKSHIPY---RVLDAPCLRNDFYSNLI 234

Query: 378 DWG-SANVLSIALGNTVYLWDAASGSTSEL--VTIGEDDGPVTSVSWAP 515
            W  + N + + LG +VY+W    G+ S L    + E    VT VS+ P
Sbjct: 235 SWSRTTNNVLVGLGCSVYIWSEKEGAVSILDHQYLSEKRDLVTCVSFCP 283

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>CORT_DROME (Q960N3) Protein cortex|
          Length = 483

 Score = 36.2 bits (82), Expect = 0.056
 Identities = 42/177 (23%), Positives = 74/177 (41%), Gaps = 6/177 (3%)
 Frame = +3

Query: 9   TPRNPAVKCYGDRFIPDRSAMDMDMAHYLLTEPRKDSKNAVTPSPAKEAYRKLLAEKLLN 188
           T +   V   G+RFIP+R   +    +      RK+     T      +Y +        
Sbjct: 43  TSKGQEVSYVGERFIPNRFERENIEFNLKYIGKRKERDILETGVTLTASYWRQSGFISNI 102

Query: 189 NRT------RILAFRNKPPEPENSMLMELHADAASIQARPVKKRRYIPQSAERTLDAPDI 350
           NRT      R+  F ++  +   S +++  +  +     P + R Y  Q+A  T + P I
Sbjct: 103 NRTFGIGERRLFQFSSQ--QGTRSRVVDNDSADSDWPCNP-RARPYAIQNA--THEMPGI 157

Query: 351 VDDYYLNLLDWGSANVLSIALGNTVYLWDAASGSTSELVTIGEDDGPVTSVSWAPDG 521
                 N++DW S  +++++ G  V LW     ST     +   + P TS+ ++PDG
Sbjct: 158 CSPVDYNMMDWSSGGMVAMSSGQDVMLWRNLDEST----MVFSVESP-TSLKYSPDG 209

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>YTFR_ECOLI (Q6BEX0) Hypothetical ABC transporter ATP-binding protein ytfR|
          Length = 500

 Score = 35.8 bits (81), Expect = 0.073
 Identities = 15/35 (42%), Positives = 22/35 (62%)
 Frame = -3

Query: 497 SDRAIVLTNGNKLGCRPTCSVPEVYRVPQCNGQHI 393
           SDR  VL NG+ +GCR TC +P++  V    G+ +
Sbjct: 212 SDRITVLRNGSFVGCRETCELPQIELVKMMLGREL 246

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>YTFR_ECO57 (P63299) Hypothetical ABC transporter ATP-binding protein ytfR|
          Length = 500

 Score = 35.8 bits (81), Expect = 0.073
 Identities = 15/35 (42%), Positives = 22/35 (62%)
 Frame = -3

Query: 497 SDRAIVLTNGNKLGCRPTCSVPEVYRVPQCNGQHI 393
           SDR  VL NG+ +GCR TC +P++  V    G+ +
Sbjct: 212 SDRITVLRNGSFVGCRETCELPQIELVKMMLGREL 246

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>Y1491_SYNY3 (P74598) Hypothetical WD-repeat protein sll1491|
          Length = 348

 Score = 33.5 bits (75), Expect = 0.36
 Identities = 16/44 (36%), Positives = 31/44 (70%), Gaps = 1/44 (2%)
 Frame = +3

Query: 396 VLSIALGN-TVYLWDAASGSTSELVTIGEDDGPVTSVSWAPDGN 524
           ++S++ G+ T+ +W+ ASG+  +  T+ ++ GP TSV + PDG+
Sbjct: 159 IVSVSGGDRTIRIWERASGNLIQ--TLADNLGPTTSVVFTPDGS 200

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>IFT80_HUMAN (Q9P2H3) Intraflagellar transport 80 homolog (WD-repeat protein 56)|
          Length = 777

 Score = 33.1 bits (74), Expect = 0.47
 Identities = 18/51 (35%), Positives = 26/51 (50%), Gaps = 2/51 (3%)
 Frame = +3

Query: 375 LDWGSANVLSIALGNTVY--LWDAASGSTSELVTIGEDDGPVTSVSWAPDG 521
           +DW S N L ++ G      +WD+       L      + P+TSV+WAPDG
Sbjct: 194 VDWNSVNDLILSAGEDCKYKVWDSYG---RPLYNSQPHEHPITSVAWAPDG 241

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>HETE1_PODAN (Q00808) Vegetatible incompatibility protein HET-E-1|
          Length = 1356

 Score = 33.1 bits (74), Expect = 0.47
 Identities = 17/42 (40%), Positives = 28/42 (66%)
 Frame = +3

Query: 396  VLSIALGNTVYLWDAASGSTSELVTIGEDDGPVTSVSWAPDG 521
            V S ++  T+ +WDAASG+ ++  T+    G V SV+++PDG
Sbjct: 1150 VASGSIDGTIKIWDAASGTCTQ--TLEGHGGWVQSVAFSPDG 1189



 Score = 32.7 bits (73), Expect = 0.62
 Identities = 17/42 (40%), Positives = 28/42 (66%)
 Frame = +3

Query: 396  VLSIALGNTVYLWDAASGSTSELVTIGEDDGPVTSVSWAPDG 521
            V S ++  T+ +WDAASG+ ++  T+    G V SV+++PDG
Sbjct: 1108 VASGSIDGTIKIWDAASGTCTQ--TLEGHGGWVHSVAFSPDG 1147



 Score = 32.3 bits (72), Expect = 0.81
 Identities = 26/103 (25%), Positives = 44/103 (42%), Gaps = 12/103 (11%)
 Frame = +3

Query: 249  MELHADAASIQARPVKKRRYIPQSAERTLDAPDIVDDYYLNLLDWGSANVLSIALG---- 416
            +E H  +    A     +R    S ++T+   D         L+    +V S+A      
Sbjct: 837  LEGHGSSVLSVAFSADGQRVASGSDDKTIKIWDTASGTGTQTLEGHGGSVWSVAFSPDRE 896

Query: 417  --------NTVYLWDAASGSTSELVTIGEDDGPVTSVSWAPDG 521
                     T+ +WDAASG+ ++  T+    G V SV+++PDG
Sbjct: 897  RVASGSDDKTIKIWDAASGTCTQ--TLEGHGGRVQSVAFSPDG 937



 Score = 30.4 bits (67), Expect = 3.1
 Identities = 14/35 (40%), Positives = 24/35 (68%)
 Frame = +3

Query: 417  NTVYLWDAASGSTSELVTIGEDDGPVTSVSWAPDG 521
            +T+ +WDAASG+ ++  T+      V SV+++PDG
Sbjct: 947  HTIKIWDAASGTCTQ--TLEGHGSSVLSVAFSPDG 979



 Score = 30.0 bits (66), Expect = 4.0
 Identities = 16/42 (38%), Positives = 26/42 (61%)
 Frame = +3

Query: 396  VLSIALGNTVYLWDAASGSTSELVTIGEDDGPVTSVSWAPDG 521
            V S +   T+ +WD ASG+ ++  T+    G V SV+++PDG
Sbjct: 1192 VASGSSDKTIKIWDTASGTCTQ--TLEGHGGWVQSVAFSPDG 1231



 Score = 29.3 bits (64), Expect = 6.9
 Identities = 25/103 (24%), Positives = 42/103 (40%), Gaps = 12/103 (11%)
 Frame = +3

Query: 249  MELHADAASIQARPVKKRRYIPQSAERTLDAPDIVDDYYLNLLDWGSANVLSIALG---- 416
            +E H  +    A     +R    S ++T+   D         L+    +V S+A      
Sbjct: 963  LEGHGSSVLSVAFSPDGQRVASGSGDKTIKIWDTASGTCTQTLEGHGGSVWSVAFSPDGQ 1022

Query: 417  --------NTVYLWDAASGSTSELVTIGEDDGPVTSVSWAPDG 521
                     T+ +WD ASG+ ++  T+    G V SV ++PDG
Sbjct: 1023 RVASGSDDKTIKIWDTASGTCTQ--TLEGHGGWVQSVVFSPDG 1063

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>IFT80_RAT (Q66HB3) Intraflagellar transport 80 homolog (WD-repeat protein 56)|
          Length = 777

 Score = 32.0 bits (71), Expect = 1.1
 Identities = 18/51 (35%), Positives = 26/51 (50%), Gaps = 2/51 (3%)
 Frame = +3

Query: 375 LDWGSANVLSIALGNTVY--LWDAASGSTSELVTIGEDDGPVTSVSWAPDG 521
           +DW S N L ++ G      +WD+       L      + P+TSV+WAPDG
Sbjct: 194 VDWNSVNDLILSAGEDCKYKVWDSYG---RVLYGSQPHEHPITSVAWAPDG 241

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>IFT80_MOUSE (Q8K057) Intraflagellar transport 80 homolog (WD-repeat protein 56)|
          Length = 777

 Score = 32.0 bits (71), Expect = 1.1
 Identities = 18/51 (35%), Positives = 26/51 (50%), Gaps = 2/51 (3%)
 Frame = +3

Query: 375 LDWGSANVLSIALGNTVY--LWDAASGSTSELVTIGEDDGPVTSVSWAPDG 521
           +DW S N L ++ G      +WD+       L      + P+TSV+WAPDG
Sbjct: 194 VDWNSVNDLILSAGEDCKYKVWDSYG---RVLYGSQPHEHPITSVAWAPDG 241

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>RIP_HUMAN (Q86UA6) RPA-interacting protein (hRIP)|
          Length = 219

 Score = 31.6 bits (70), Expect = 1.4
 Identities = 19/58 (32%), Positives = 30/58 (51%), Gaps = 5/58 (8%)
 Frame = +3

Query: 96  LTEPRKDSKNAVTPSPAKEAYRKLLAEKLLNNRTRIL-----AFRNKPPEPENSMLME 254
           L  PR+     V   P KEA+R+   E++ N+R R+L     A  + P   +NS L++
Sbjct: 5   LRSPRRSLYKLVGSPPWKEAFRQRCLERMRNSRDRLLNRYRQAGSSGPGNSQNSFLVQ 62

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>NT3_HUMAN (P20783) Neurotrophin-3 precursor (NT-3) (Neurotrophic factor)|
           (HDNF) (Nerve growth factor 2) (NGF-2)
          Length = 257

 Score = 30.0 bits (66), Expect = 4.0
 Identities = 22/89 (24%), Positives = 41/89 (46%), Gaps = 8/89 (8%)
 Frame = +3

Query: 87  HYLLTEPRKDS-KNAVTPSPAKEAYR-------KLLAEKLLNNRTRILAFRNKPPEPENS 242
           +Y  T P+ ++ +      PAK A++       +LL ++   N  R+L   + P EP   
Sbjct: 58  NYQSTLPKAEAPREPERGGPAKSAFQPVIAMDTELLRQQRRYNSPRVLLSDSTPLEPPPL 117

Query: 243 MLMELHADAASIQARPVKKRRYIPQSAER 329
            LME +  +  +  R  +++RY    + R
Sbjct: 118 YLMEDYVGSPVVANRTSRRKRYAEHKSHR 146

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>PRP4_YEAST (P20053) U4/U6 small nuclear ribonucleoprotein PRP4|
          Length = 465

 Score = 30.0 bits (66), Expect = 4.0
 Identities = 14/42 (33%), Positives = 25/42 (59%)
 Frame = +3

Query: 396 VLSIALGNTVYLWDAASGSTSELVTIGEDDGPVTSVSWAPDG 521
           V S  + +   LWD  SGS  +++T+     P+ +V+W+P+G
Sbjct: 322 VCSGGMDSLSMLWDIRSGS--KVMTLAGHSKPIYTVAWSPNG 361

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>YH92_CAEEL (Q23256) Hypothetical WD-repeat protein ZC302.2|
          Length = 501

 Score = 30.0 bits (66), Expect = 4.0
 Identities = 14/33 (42%), Positives = 22/33 (66%)
 Frame = +3

Query: 423 VYLWDAASGSTSELVTIGEDDGPVTSVSWAPDG 521
           + +WDAASGS  + + +  D  PVT V ++P+G
Sbjct: 363 IRVWDAASGSCLKTL-VDTDHAPVTFVCFSPNG 394



 Score = 29.3 bits (64), Expect = 6.9
 Identities = 15/46 (32%), Positives = 24/46 (52%)
 Frame = +3

Query: 387 SANVLSIALGNTVYLWDAASGSTSELVTIGEDDGPVTSVSWAPDGN 524
           S+ + S     TV +WD  +G   + +    D  P+TS+S+  DGN
Sbjct: 309 SSLIASAGFDETVRVWDFKTGLCVKCIPAHSD--PITSISYNHDGN 352

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>AAAS_MOUSE (P58742) Aladin (Adracalin)|
          Length = 546

 Score = 29.6 bits (65), Expect = 5.3
 Identities = 17/52 (32%), Positives = 27/52 (51%), Gaps = 7/52 (13%)
 Frame = +3

Query: 387 SANVLSIALGNTVYLWDAASGSTSELVTIG-------EDDGPVTSVSWAPDG 521
           SA+VL++A  + + +W     S S   + G           PVTS++WAP+G
Sbjct: 205 SASVLAVACQSCILIWTLDPTSLSTRPSSGCAQVLSHPGHTPVTSLAWAPNG 256

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>AAAS_HUMAN (Q9NRG9) Aladin (Adracalin)|
          Length = 546

 Score = 29.3 bits (64), Expect = 6.9
 Identities = 17/52 (32%), Positives = 26/52 (50%), Gaps = 7/52 (13%)
 Frame = +3

Query: 387 SANVLSIALGNTVYLWDAASGSTSELVTIG-------EDDGPVTSVSWAPDG 521
           SA+VL++A  + + +W     S S   + G           PVTS++WAP G
Sbjct: 205 SASVLAVACQSCILIWTLDPTSLSTRPSSGCAQVLSHPGHTPVTSLAWAPSG 256

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>WDR26_MOUSE (Q8C6G8) WD-repeat protein 26|
          Length = 514

 Score = 29.3 bits (64), Expect = 6.9
 Identities = 15/58 (25%), Positives = 30/58 (51%), Gaps = 4/58 (6%)
 Frame = +3

Query: 360 YYLNLLDWGSANVLSIALG----NTVYLWDAASGSTSELVTIGEDDGPVTSVSWAPDG 521
           Y ++ + W   +   +A G    + ++LW+  +G     ++   +D  +TSV+W PDG
Sbjct: 255 YGVSYIAWSPDDSYLVACGPDDCSELWLWNVQTGELRTKMSQSHEDS-LTSVAWNPDG 311

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>WDR7_MOUSE (Q920I9) WD-repeat protein 7 (TGF-beta resistance-associated protein|
            TRAG)
          Length = 1489

 Score = 28.9 bits (63), Expect = 9.0
 Identities = 18/42 (42%), Positives = 25/42 (59%), Gaps = 3/42 (7%)
 Frame = +3

Query: 405  IALG---NTVYLWDAASGSTSELVTIGEDDGPVTSVSWAPDG 521
            IA+G    +V L+D  +G      TI    GP+T+VS+APDG
Sbjct: 1367 IAVGARHGSVALYDIRTGKCQ---TIHGHKGPITAVSFAPDG 1405

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>APAG_BORPE (Q7VU61) Protein apaG|
          Length = 131

 Score = 28.9 bits (63), Expect = 9.0
 Identities = 17/51 (33%), Positives = 23/51 (45%), Gaps = 1/51 (1%)
 Frame = +2

Query: 281 GQTGEEASIHPSVRRE-DSGCARHR*RLLPQPAGLGKRQCAVHCTGEHGIP 430
           G  G++  + P    E  SGC        P P  +G  +   HC GE+GIP
Sbjct: 72  GVVGQQPLLAPGETFEYTSGC--------PLPTPIGTMRGTYHCVGENGIP 114

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>APAG_BORPA (Q7W393) Protein apaG|
          Length = 131

 Score = 28.9 bits (63), Expect = 9.0
 Identities = 17/51 (33%), Positives = 23/51 (45%), Gaps = 1/51 (1%)
 Frame = +2

Query: 281 GQTGEEASIHPSVRRE-DSGCARHR*RLLPQPAGLGKRQCAVHCTGEHGIP 430
           G  G++  + P    E  SGC        P P  +G  +   HC GE+GIP
Sbjct: 72  GVVGQQPLLAPGETFEYTSGC--------PLPTPIGTMRGTYHCVGENGIP 114

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>APAG_BORBR (Q7WEL1) Protein apaG|
          Length = 131

 Score = 28.9 bits (63), Expect = 9.0
 Identities = 17/51 (33%), Positives = 23/51 (45%), Gaps = 1/51 (1%)
 Frame = +2

Query: 281 GQTGEEASIHPSVRRE-DSGCARHR*RLLPQPAGLGKRQCAVHCTGEHGIP 430
           G  G++  + P    E  SGC        P P  +G  +   HC GE+GIP
Sbjct: 72  GVVGQQPLLAPGETFEYTSGC--------PLPTPIGTMRGTYHCVGENGIP 114

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>PKWA_THECU (P49695) Probable serine/threonine-protein kinase pkwA (EC|
           2.7.11.1)
          Length = 742

 Score = 28.9 bits (63), Expect = 9.0
 Identities = 23/79 (29%), Positives = 37/79 (46%), Gaps = 11/79 (13%)
 Frame = +3

Query: 318 SAERTLDAPDIVDDYYLNLLDWGSANVLSIALG-----------NTVYLWDAASGSTSEL 464
           S + T+   D+      ++L   + NV+S+A             +TV+LWD ASG    L
Sbjct: 604 SRDGTIRLWDVATGKERDVLQAPAENVVSLAFSPDGSMLVHGSDSTVHLWDVASGEA--L 661

Query: 465 VTIGEDDGPVTSVSWAPDG 521
            T       V +V+++PDG
Sbjct: 662 HTFEGHTDWVRAVAFSPDG 680

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>ZEP1_MOUSE (Q03172) Zinc finger protein 40 (Transcription factor alphaA-CRYBP1)|
            (Alpha A-crystallin-binding protein I) (Alpha A-CRYBP1)
          Length = 2688

 Score = 28.9 bits (63), Expect = 9.0
 Identities = 12/22 (54%), Positives = 14/22 (63%)
 Frame = +2

Query: 59   QVGDGHGHGALPPDGAEEGQQE 124
            Q+  G GH A PP G+ EG QE
Sbjct: 2570 QMPAGQGHSAEPPQGSPEGPQE 2591

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>WDR7_RAT (Q9ERH3) WD-repeat protein 7 (TGF-beta resistance-associated protein|
            TRAG)
          Length = 1488

 Score = 28.9 bits (63), Expect = 9.0
 Identities = 18/42 (42%), Positives = 25/42 (59%), Gaps = 3/42 (7%)
 Frame = +3

Query: 405  IALG---NTVYLWDAASGSTSELVTIGEDDGPVTSVSWAPDG 521
            IA+G    +V L+D  +G      TI    GP+T+VS+APDG
Sbjct: 1366 IAVGARHGSVALYDIRTGKCQ---TIHGHKGPITAVSFAPDG 1404

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>PPAC_STRMU (O68579) Probable manganese-dependent inorganic pyrophosphatase (EC|
           3.6.1.1) (Pyrophosphate phospho-hydrolase) (PPase)
          Length = 310

 Score = 28.9 bits (63), Expect = 9.0
 Identities = 19/77 (24%), Positives = 35/77 (45%), Gaps = 2/77 (2%)
 Frame = +3

Query: 102 EPRKDSKNAVTPSPAKEAYRK--LLAEKLLNNRTRILAFRNKPPEPENSMLMELHADAAS 275
           E + + + A+  S A   Y    L+   +LN+ + ILA  N   + E +    L  + A 
Sbjct: 230 ERQNEIEEAIKASQAANGYSDFVLMITDILNSNSEILALGNNTDKVEAAFNFTLKNNHAF 289

Query: 276 IQARPVKKRRYIPQSAE 326
           +     +K++ +PQ  E
Sbjct: 290 LAGAVSRKKQVVPQLTE 306

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>HIRA_CHICK (P79987) HIRA protein (TUP1-like enhancer of split protein 1)|
           (CHIRA)
          Length = 1018

 Score = 28.9 bits (63), Expect = 9.0
 Identities = 14/40 (35%), Positives = 21/40 (52%)
 Frame = +3

Query: 402 SIALGNTVYLWDAASGSTSELVTIGEDDGPVTSVSWAPDG 521
           S ++ NTV +W+AA      L T+    G V  ++W P G
Sbjct: 147 SCSVDNTVVIWNAAVKFPEILATLKGHSGLVKGLTWDPVG 186

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>HIRA_DROME (O17468) HIRA protein homolog (dHIRA)|
          Length = 1047

 Score = 28.9 bits (63), Expect = 9.0
 Identities = 19/51 (37%), Positives = 26/51 (50%), Gaps = 2/51 (3%)
 Frame = +3

Query: 375 LDWGSANVL--SIALGNTVYLWDAASGSTSELVTIGEDDGPVTSVSWAPDG 521
           L W   +V   S ++ NTV +WDA +   S + T+    G V  VSW P G
Sbjct: 135 LAWSPNDVYLASCSIDNTVIIWDAQAFPHS-VATLKGHTGLVKGVSWDPLG 184

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>HAT2_USTMA (Q4P553) Histone acetyltransferase type B subunit 2 (EC 2.3.1.48)|
          Length = 485

 Score = 28.9 bits (63), Expect = 9.0
 Identities = 21/78 (26%), Positives = 31/78 (39%), Gaps = 1/78 (1%)
 Frame = +3

Query: 288 PVKKRRYIPQSAERTLDAPDIVDDYYLNLLDWGSANVLSIALGNTVY-LWDAASGSTSEL 464
           P++ RR    +A   +DA D V+D          A +    L N  Y +W   S    +L
Sbjct: 38  PLRSRRSATATATAKMDASDFVED---------EAAIAQQKLSNEEYKIWKKNSPFLYDL 88

Query: 465 VTIGEDDGPVTSVSWAPD 518
           V     + P  +  W PD
Sbjct: 89  VVTHALEWPSLTCQWLPD 106

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>WDR26_HUMAN (Q9H7D7) WD-repeat protein 26|
          Length = 514

 Score = 28.9 bits (63), Expect = 9.0
 Identities = 15/58 (25%), Positives = 30/58 (51%), Gaps = 4/58 (6%)
 Frame = +3

Query: 360 YYLNLLDWGSANVLSIALG----NTVYLWDAASGSTSELVTIGEDDGPVTSVSWAPDG 521
           Y ++ + W   +   +A G    + ++LW+  +G     ++   +D  +TSV+W PDG
Sbjct: 255 YGVSYIAWSPDDNYLVACGPDDCSELWLWNVQTGELRTKMSQSHEDS-LTSVAWNPDG 311


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.318    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 64,961,607
Number of Sequences: 219361
Number of extensions: 1285713
Number of successful extensions: 5278
Number of sequences better than 10.0: 40
Number of HSP's better than 10.0 without gapping: 4903
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 5194
length of database: 80,573,946
effective HSP length: 105
effective length of database: 57,541,041
effective search space used: 3970331829
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)

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full-length cDNA and EST

Clone Information

BLAST Search Result