ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日:2016年5月1日

Clone Information

BLAST Search Result

Clone Name bags7p20
Clone Library Name barley_pub

No. Definition Score
(bits)
E
Value
1VTNC_PIG (P48819) Vitronectin precursor (Serum spreading factor)... 33 0.93
2ADA2A_PIG (P18871) Alpha-2A adrenergic receptor (Alpha-2A adreno... 30 4.6
3LYXK_ECOLI (P37677) L-xylulose/3-keto-L-gulonate kinase (EC 2.7.... 30 4.6
4NIA_USTMA (Q05531) Nitrate reductase [NADPH] (EC 1.7.1.3) (NR) 30 6.0
5CDT1_HUMAN (Q9H211) DNA replication factor Cdt1 (Double parked h... 30 6.0
6LASS6_MOUSE (Q8C172) LAG1 longevity assurance homolog 6 30 6.0
7LASS6_HUMAN (Q6ZMG9) LAG1 longevity assurance homolog 6 30 6.0
8DRD4_HUMAN (P21917) D(4) dopamine receptor (Dopamine D4 receptor... 30 7.9
9FECR_ECOLI (P23485) Protein fecR 30 7.9
10VGLG_HRSV7 (P27026) Major surface glycoprotein G (Attachment gly... 30 7.9

>VTNC_PIG (P48819) Vitronectin precursor (Serum spreading factor) (S-protein)|
          Length = 459

 Score = 32.7 bits (73), Expect = 0.93
 Identities = 14/30 (46%), Positives = 16/30 (53%)
 Frame = +3

Query: 57  GRDACLGQKWHPQSNSTWQPWWLQRKDGQG 146
           GR     QK H QS STW PW+   + G G
Sbjct: 365 GRGHSRSQKSHRQSRSTWLPWFSSEETGPG 394



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>ADA2A_PIG (P18871) Alpha-2A adrenergic receptor (Alpha-2A adrenoceptor)|
           (Alpha-2A adrenoreceptor) (Alpha-2AAR)
          Length = 450

 Score = 30.4 bits (67), Expect = 4.6
 Identities = 19/55 (34%), Positives = 27/55 (49%), Gaps = 1/55 (1%)
 Frame = +2

Query: 365 RRRPAA-GPLKPKTPAQTRRQSRADSTAWKGSRKRIRFQSFTLCLPLALGTWSCC 526
           RR P A GP  P T A   R   A ++ W+G + R +   FT  L + +G +  C
Sbjct: 334 RRGPGAPGPGAPATGAGEERGGVAKASRWRGRQNREK--RFTFVLAVVIGVFVVC 386



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>LYXK_ECOLI (P37677) L-xylulose/3-keto-L-gulonate kinase (EC 2.7.1.53) (EC|
           2.7.1.-) (L-xylulokinase) (3-dehydro-L-gulonate kinase)
          Length = 498

 Score = 30.4 bits (67), Expect = 4.6
 Identities = 16/49 (32%), Positives = 23/49 (46%)
 Frame = +3

Query: 12  DLGGAXXYLGYFSTAGRDACLGQKWHPQSNSTWQPWWLQRKDGQGWACC 158
           D GG+    G +   GR+A  G +  P    + QP W +R   + W CC
Sbjct: 9   DCGGSWLKAGLYDREGREA--GVQRLPLCALSPQPGWAERDMAELWQCC 55



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>NIA_USTMA (Q05531) Nitrate reductase [NADPH] (EC 1.7.1.3) (NR)|
          Length = 908

 Score = 30.0 bits (66), Expect = 6.0
 Identities = 16/36 (44%), Positives = 19/36 (52%), Gaps = 6/36 (16%)
 Frame = +1

Query: 55  RGEMLAWGKNGTRSQTRHGN------PGGSSGRMVK 144
           +G ++AWG NG      HG       PG  SGRMVK
Sbjct: 208 KGMLIAWGLNGEDLSPDHGYPLRLVVPGQISGRMVK 243



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>CDT1_HUMAN (Q9H211) DNA replication factor Cdt1 (Double parked homolog) (DUP)|
          Length = 546

 Score = 30.0 bits (66), Expect = 6.0
 Identities = 17/44 (38%), Positives = 24/44 (54%), Gaps = 5/44 (11%)
 Frame = +2

Query: 356 YTSRRRPAAGPLKP-----KTPAQTRRQSRADSTAWKGSRKRIR 472
           + +RRRP    + P     +TP+  R   RA ++A  GSRKR R
Sbjct: 9   FFARRRPGPPRIAPPKLACRTPSPARPALRAPASATSGSRKRAR 52



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>LASS6_MOUSE (Q8C172) LAG1 longevity assurance homolog 6|
          Length = 384

 Score = 30.0 bits (66), Expect = 6.0
 Identities = 9/20 (45%), Positives = 14/20 (70%)
 Frame = +2

Query: 131 EGWSRVGVLPSWWIISVMLM 190
           E W  VG  PSWW+ +++L+
Sbjct: 290 ESWEIVGPYPSWWVFNLLLL 309



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>LASS6_HUMAN (Q6ZMG9) LAG1 longevity assurance homolog 6|
          Length = 384

 Score = 30.0 bits (66), Expect = 6.0
 Identities = 9/20 (45%), Positives = 14/20 (70%)
 Frame = +2

Query: 131 EGWSRVGVLPSWWIISVMLM 190
           E W  VG  PSWW+ +++L+
Sbjct: 290 ESWEIVGPYPSWWVFNLLLL 309



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>DRD4_HUMAN (P21917) D(4) dopamine receptor (Dopamine D4 receptor) (D(2C)|
           dopamine receptor)
          Length = 467

 Score = 29.6 bits (65), Expect = 7.9
 Identities = 17/49 (34%), Positives = 24/49 (48%)
 Frame = +2

Query: 380 AGPLKPKTPAQTRRQSRADSTAWKGSRKRIRFQSFTLCLPLALGTWSCC 526
           A  L P+TP QTRR+ RA  T  +    R+        LP+ +G +  C
Sbjct: 366 AAALPPQTPPQTRRRRRAKITGRERKAMRV--------LPVVVGAFLLC 406



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>FECR_ECOLI (P23485) Protein fecR|
          Length = 317

 Score = 29.6 bits (65), Expect = 7.9
 Identities = 13/30 (43%), Positives = 18/30 (60%)
 Frame = +3

Query: 75  GQKWHPQSNSTWQPWWLQRKDGQGWACCQV 164
           G++  PQ  + WQ W+ Q +D Q WA  QV
Sbjct: 25  GERVSPQQEARWQQWYEQDQDNQ-WAWQQV 53



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>VGLG_HRSV7 (P27026) Major surface glycoprotein G (Attachment glycoprotein G)|
          Length = 297

 Score = 29.6 bits (65), Expect = 7.9
 Identities = 18/67 (26%), Positives = 30/67 (44%)
 Frame = -2

Query: 207 ELSIKFISITEMIHQLGNTPTLDHPSAGATRVAMSSLTAGAIFAPGKHLSPQWRSSQDXX 28
           +L I F +++E   Q   TP L  PSA +T  + +  T        +   P  +  Q+  
Sbjct: 96  QLGISFSNLSETTSQPATTPALTTPSAESTPQSTTVKTKNTTTTQIQPSKPTTKQHQNKP 155

Query: 27  WHLPNHH 7
            + PN+H
Sbjct: 156 PNKPNNH 162


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.318    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 93,092,855
Number of Sequences: 219361
Number of extensions: 1927245
Number of successful extensions: 5806
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 5555
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 5806
length of database: 80,573,946
effective HSP length: 107
effective length of database: 57,102,319
effective search space used: 5938641176
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
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