| Clone Name | bags7p17 |
|---|---|
| Clone Library Name | barley_pub |
>dbj|AK121320.1| Oryza sativa (japonica cultivar-group) cDNA clone:J023114C04, full insert sequence Length = 2409 Score = 184 bits (93), Expect = 2e-43 Identities = 192/225 (85%) Strand = Plus / Plus Query: 308 ttctgtaagccagatacgattgttgacagtgctgaaaatctgggtgaagttctccgtggg 367 ||||| |||||||| || || |||||||||||||||||||| ||||| ||||| ||||| Sbjct: 308 ttctgcaagccagaaactatcgttgacagtgctgaaaatctcggtgaggttcttcgtggt 367 Query: 368 gatcgcattgagaactctccatatgtgtttgaaatgagggtacctcagatgtgtcaaata 427 |||||||||||||||||||||||||||||| ||||||| | || ||||||| || || Sbjct: 368 gatcgcattgagaactctccatatgtgtttcaaatgagagagcccaagatgtgccagatt 427 Query: 428 gtctgcaagatttcagttggggaaaaagaaggaaagggtctcaaggaaaagattgaagat 487 |||||||| | | ||||| || ||||||| ||||| |||||||||||||| || ||| Sbjct: 428 gtctgcaaattaactgttggtgagaaagaagcaaaggagctcaaggaaaagatagaggat 487 Query: 488 gagtaccgtgtgaacatgattcttgacaatctacctctagttgtt 532 || || |||||||||||||||||||||||||| || ||||||||| Sbjct: 488 gaatatcgtgtgaacatgattcttgacaatctcccgctagttgtt 532 Score = 52.0 bits (26), Expect = 0.002 Identities = 38/42 (90%) Strand = Plus / Plus Query: 183 ccgccggattctacctccccggcgtcgcgcccaacgacttcg 224 ||||||| |||||||| ||||||||||| |||| |||||||| Sbjct: 183 ccgccgggttctacctgcccggcgtcgcccccaccgacttcg 224
>dbj|AK071848.1| Oryza sativa (japonica cultivar-group) cDNA clone:J023121L02, full insert sequence Length = 1521 Score = 184 bits (93), Expect = 2e-43 Identities = 192/225 (85%) Strand = Plus / Plus Query: 308 ttctgtaagccagatacgattgttgacagtgctgaaaatctgggtgaagttctccgtggg 367 ||||| |||||||| || || |||||||||||||||||||| ||||| ||||| ||||| Sbjct: 310 ttctgcaagccagaaactatcgttgacagtgctgaaaatctcggtgaggttcttcgtggt 369 Query: 368 gatcgcattgagaactctccatatgtgtttgaaatgagggtacctcagatgtgtcaaata 427 |||||||||||||||||||||||||||||| ||||||| | || ||||||| || || Sbjct: 370 gatcgcattgagaactctccatatgtgtttcaaatgagagagcccaagatgtgccagatt 429 Query: 428 gtctgcaagatttcagttggggaaaaagaaggaaagggtctcaaggaaaagattgaagat 487 |||||||| | | ||||| || ||||||| ||||| |||||||||||||| || ||| Sbjct: 430 gtctgcaaattaactgttggtgagaaagaagcaaaggagctcaaggaaaagatagaggat 489 Query: 488 gagtaccgtgtgaacatgattcttgacaatctacctctagttgtt 532 || || |||||||||||||||||||||||||| || ||||||||| Sbjct: 490 gaatatcgtgtgaacatgattcttgacaatctcccgctagttgtt 534 Score = 52.0 bits (26), Expect = 0.002 Identities = 38/42 (90%) Strand = Plus / Plus Query: 183 ccgccggattctacctccccggcgtcgcgcccaacgacttcg 224 ||||||| |||||||| ||||||||||| |||| |||||||| Sbjct: 185 ccgccgggttctacctgcccggcgtcgcccccaccgacttcg 226
>dbj|AK070103.1| Oryza sativa (japonica cultivar-group) cDNA clone:J023043G13, full insert sequence Length = 2478 Score = 180 bits (91), Expect = 3e-42 Identities = 155/175 (88%), Gaps = 1/175 (0%) Strand = Plus / Plus Query: 332 gacagtgctgaaaatctgggtgaagttctccgtggggatcgcattgagaactctccatat 391 ||||||||| ||||||| ||||||||||| ||||| ||||| || |||||||||||||| Sbjct: 292 gacagtgctcaaaatctcggtgaagttcttcgtggtgatcgaatcgagaactctccatac 351 Query: 392 gtgtttgaaatgagggtacctcagatg-tgtcaaatagtctgcaagatttcagttgggga 450 |||||||||||| | ||||| ||| ||||||||||||||||||||||| || ||||| Sbjct: 352 acgtttgaaatgagagagcctcaaatgctgtcaaatagtctgcaagatttctgtcgggga 411 Query: 451 aaaagaaggaaagggtctcaaggaaaagattgaagatgagtaccgtgtgaacatg 505 ||||||| |||| |||||||||||||||||||||||||||||||||||||||| Sbjct: 412 gaaagaagcaaagattctcaaggaaaagattgaagatgagtaccgtgtgaacatg 466 Score = 105 bits (53), Expect = 2e-19 Identities = 95/109 (87%) Strand = Plus / Plus Query: 183 ccgccggattctacctccccggcgtcgcgcccaacgacttcgaaaagaaagaccatctcc 242 ||||||| ||||||||||| ||||||||||||||| ||||||| |||||||| | ||| | Sbjct: 176 ccgccgggttctacctcccaggcgtcgcgcccaacaacttcgacaagaaagatcctcttc 235 Query: 243 ctgtgaaagtcaataaactgacttcaattaagacacagcttccctactc 291 ||||||||||| ||| |||| ||||| ||||| |||||||||||||| Sbjct: 236 aagtgaaagtcaacaaattgacatcaatcaagacccagcttccctactc 284 Score = 60.0 bits (30), Expect = 8e-06 Identities = 45/50 (90%) Strand = Plus / Plus Query: 500 aacatgattcttgacaatctacctctagttgttcctattcaaagagtgga 549 ||||||||||||||||| |||||||||||||||| ||| ||||| |||| Sbjct: 543 aacatgattcttgacaacttacctctagttgttccaattaaaagaatgga 592
>ref|XM_507328.1| PREDICTED Oryza sativa (japonica cultivar-group), OJ1125_C01.28 mRNA Length = 2304 Score = 145 bits (73), Expect = 2e-31 Identities = 202/245 (82%) Strand = Plus / Plus Query: 191 ttctacctccccggcgtcgcgcccaacgacttcgaaaagaaagaccatctccctgtgaaa 250 ||||||||||||||||||||||||||||||||| | |||||||| | || | ||||| Sbjct: 154 ttctacctccccggcgtcgcgcccaacgacttccagaagaaagatccacttcaagtgaag 213 Query: 251 gtcaataaactgacttcaattaagacacagcttccctactccttctactctctcccattc 310 || || || ||| | || | |||||||| || ||||| || | ||||| || || ||| Sbjct: 214 gtgaacaagctgtcatccacaaagacacaactcccctattcatattactcccttcctttc 273 Query: 311 tgtaagccagatacgattgttgacagtgctgaaaatctgggtgaagttctccgtggggat 370 || |||||||||||||| ||||||||||| |||||||| || |||||||| ||||| ||| Sbjct: 274 tgcaagccagatacgatagttgacagtgcagaaaatcttggagaagttctacgtggtgat 333 Query: 371 cgcattgagaactctccatatgtgtttgaaatgagggtacctcagatgtgtcaaatagtc 430 ||||||||||| ||||| ||||||||||| ||||| | || |||||||||| || ||| Sbjct: 334 cgcattgagaattctccttatgtgtttgagatgagagagcccaagatgtgtcagatcgtc 393 Query: 431 tgcaa 435 ||||| Sbjct: 394 tgcaa 398 Score = 81.8 bits (41), Expect = 2e-12 Identities = 62/69 (89%) Strand = Plus / Plus Query: 470 aaggaaaagattgaagatgagtaccgtgtgaacatgattcttgacaatctacctctagtt 529 ||||||||||| || ||||||||||| |||||||||||||||||||| || || |||||| Sbjct: 433 aaggaaaagatagaggatgagtaccgggtgaacatgattcttgacaacctcccgctagtt 492 Query: 530 gttcctatt 538 || |||||| Sbjct: 493 gtgcctatt 501
>ref|XM_483721.1| Oryza sativa (japonica cultivar-group), mRNA Length = 2211 Score = 145 bits (73), Expect = 2e-31 Identities = 202/245 (82%) Strand = Plus / Plus Query: 191 ttctacctccccggcgtcgcgcccaacgacttcgaaaagaaagaccatctccctgtgaaa 250 ||||||||||||||||||||||||||||||||| | |||||||| | || | ||||| Sbjct: 157 ttctacctccccggcgtcgcgcccaacgacttccagaagaaagatccacttcaagtgaag 216 Query: 251 gtcaataaactgacttcaattaagacacagcttccctactccttctactctctcccattc 310 || || || ||| | || | |||||||| || ||||| || | ||||| || || ||| Sbjct: 217 gtgaacaagctgtcatccacaaagacacaactcccctattcatattactcccttcctttc 276 Query: 311 tgtaagccagatacgattgttgacagtgctgaaaatctgggtgaagttctccgtggggat 370 || |||||||||||||| ||||||||||| |||||||| || |||||||| ||||| ||| Sbjct: 277 tgcaagccagatacgatagttgacagtgcagaaaatcttggagaagttctacgtggtgat 336 Query: 371 cgcattgagaactctccatatgtgtttgaaatgagggtacctcagatgtgtcaaatagtc 430 ||||||||||| ||||| ||||||||||| ||||| | || |||||||||| || ||| Sbjct: 337 cgcattgagaattctccttatgtgtttgagatgagagagcccaagatgtgtcagatcgtc 396 Query: 431 tgcaa 435 ||||| Sbjct: 397 tgcaa 401 Score = 81.8 bits (41), Expect = 2e-12 Identities = 62/69 (89%) Strand = Plus / Plus Query: 470 aaggaaaagattgaagatgagtaccgtgtgaacatgattcttgacaatctacctctagtt 529 ||||||||||| || ||||||||||| |||||||||||||||||||| || || |||||| Sbjct: 436 aaggaaaagatagaggatgagtaccgggtgaacatgattcttgacaacctcccgctagtt 495 Query: 530 gttcctatt 538 || |||||| Sbjct: 496 gtgcctatt 504
>dbj|AK099230.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013094O15, full insert sequence Length = 2211 Score = 145 bits (73), Expect = 2e-31 Identities = 202/245 (82%) Strand = Plus / Plus Query: 191 ttctacctccccggcgtcgcgcccaacgacttcgaaaagaaagaccatctccctgtgaaa 250 ||||||||||||||||||||||||||||||||| | |||||||| | || | ||||| Sbjct: 157 ttctacctccccggcgtcgcgcccaacgacttccagaagaaagatccacttcaagtgaag 216 Query: 251 gtcaataaactgacttcaattaagacacagcttccctactccttctactctctcccattc 310 || || || ||| | || | |||||||| || ||||| || | ||||| || || ||| Sbjct: 217 gtgaacaagctgtcatccacaaagacacaactcccctattcatattactcccttcctttc 276 Query: 311 tgtaagccagatacgattgttgacagtgctgaaaatctgggtgaagttctccgtggggat 370 || |||||||||||||| ||||||||||| |||||||| || |||||||| ||||| ||| Sbjct: 277 tgcaagccagatacgatagttgacagtgcagaaaatcttggagaagttctacgtggtgat 336 Query: 371 cgcattgagaactctccatatgtgtttgaaatgagggtacctcagatgtgtcaaatagtc 430 ||||||||||| ||||| ||||||||||| ||||| | || |||||||||| || ||| Sbjct: 337 cgcattgagaattctccttatgtgtttgagatgagagagcccaagatgtgtcagatcgtc 396 Query: 431 tgcaa 435 ||||| Sbjct: 397 tgcaa 401 Score = 81.8 bits (41), Expect = 2e-12 Identities = 62/69 (89%) Strand = Plus / Plus Query: 470 aaggaaaagattgaagatgagtaccgtgtgaacatgattcttgacaatctacctctagtt 529 ||||||||||| || ||||||||||| |||||||||||||||||||| || || |||||| Sbjct: 436 aaggaaaagatagaggatgagtaccgggtgaacatgattcttgacaacctcccgctagtt 495 Query: 530 gttcctatt 538 || |||||| Sbjct: 496 gtgcctatt 504
>dbj|AK072840.1| Oryza sativa (japonica cultivar-group) cDNA clone:J023141D24, full insert sequence Length = 2306 Score = 145 bits (73), Expect = 2e-31 Identities = 202/245 (82%) Strand = Plus / Plus Query: 191 ttctacctccccggcgtcgcgcccaacgacttcgaaaagaaagaccatctccctgtgaaa 250 ||||||||||||||||||||||||||||||||| | |||||||| | || | ||||| Sbjct: 154 ttctacctccccggcgtcgcgcccaacgacttccagaagaaagatccacttcaagtgaag 213 Query: 251 gtcaataaactgacttcaattaagacacagcttccctactccttctactctctcccattc 310 || || || ||| | || | |||||||| || ||||| || | ||||| || || ||| Sbjct: 214 gtgaacaagctgtcatccacaaagacacaactcccctattcatattactcccttcctttc 273 Query: 311 tgtaagccagatacgattgttgacagtgctgaaaatctgggtgaagttctccgtggggat 370 || |||||||||||||| ||||||||||| |||||||| || |||||||| ||||| ||| Sbjct: 274 tgcaagccagatacgatagttgacagtgcagaaaatcttggagaagttctacgtggtgat 333 Query: 371 cgcattgagaactctccatatgtgtttgaaatgagggtacctcagatgtgtcaaatagtc 430 ||||||||||| ||||| ||||||||||| ||||| | || |||||||||| || ||| Sbjct: 334 cgcattgagaattctccttatgtgtttgagatgagagagcccaagatgtgtcagatcgtc 393 Query: 431 tgcaa 435 ||||| Sbjct: 394 tgcaa 398 Score = 81.8 bits (41), Expect = 2e-12 Identities = 62/69 (89%) Strand = Plus / Plus Query: 470 aaggaaaagattgaagatgagtaccgtgtgaacatgattcttgacaatctacctctagtt 529 ||||||||||| || ||||||||||| |||||||||||||||||||| || || |||||| Sbjct: 433 aaggaaaagatagaggatgagtaccgggtgaacatgattcttgacaacctcccgctagtt 492 Query: 530 gttcctatt 538 || |||||| Sbjct: 493 gtgcctatt 501
>dbj|AP008214.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 8, complete sequence Length = 28434780 Score = 129 bits (65), Expect = 1e-26 Identities = 102/113 (90%), Gaps = 1/113 (0%) Strand = Plus / Minus Query: 394 gtttgaaatgagggtacctcagatg-tgtcaaatagtctgcaagatttcagttggggaaa 452 |||||||||||| | ||||| ||| ||||||||||||||||||||||| || ||||| | Sbjct: 10617866 gtttgaaatgagagagcctcaaatgctgtcaaatagtctgcaagatttctgtcggggaga 10617807 Query: 453 aagaaggaaagggtctcaaggaaaagattgaagatgagtaccgtgtgaacatg 505 |||||| |||| |||||||||||||||||||||||||||||||||||||||| Sbjct: 10617806 aagaagcaaagattctcaaggaaaagattgaagatgagtaccgtgtgaacatg 10617754 Score = 101 bits (51), Expect = 2e-18 Identities = 78/87 (89%) Strand = Plus / Plus Query: 308 ttctgtaagccagatacgattgttgacagtgctgaaaatctgggtgaagttctccgtggg 367 ||||| |||||||||||||| ||||||||||| |||||||| || |||||||| ||||| Sbjct: 27784399 ttctgcaagccagatacgatagttgacagtgcagaaaatcttggagaagttctacgtggt 27784458 Query: 368 gatcgcattgagaactctccatatgtg 394 |||||||||||||| ||||| |||||| Sbjct: 27784459 gatcgcattgagaattctccttatgtg 27784485 Score = 101 bits (51), Expect = 2e-18 Identities = 78/87 (89%) Strand = Plus / Plus Query: 308 ttctgtaagccagatacgattgttgacagtgctgaaaatctgggtgaagttctccgtggg 367 ||||| |||||||||||||| ||||||||||| |||||||| || |||||||| ||||| Sbjct: 27756106 ttctgcaagccagatacgatagttgacagtgcagaaaatcttggagaagttctacgtggt 27756165 Query: 368 gatcgcattgagaactctccatatgtg 394 |||||||||||||| ||||| |||||| Sbjct: 27756166 gatcgcattgagaattctccttatgtg 27756192 Score = 95.6 bits (48), Expect = 1e-16 Identities = 72/80 (90%) Strand = Plus / Plus Query: 308 ttctgtaagccagatacgattgttgacagtgctgaaaatctgggtgaagttctccgtggg 367 ||||| |||||||||||||| ||||||||||| |||||||| || |||||||| ||||| Sbjct: 27765045 ttctgcaagccagatacgatagttgacagtgcagaaaatcttggagaagttctacgtggt 27765104 Query: 368 gatcgcattgagaactctcc 387 |||||||||||||| ||||| Sbjct: 27765105 gatcgcattgagaattctcc 27765124 Score = 69.9 bits (35), Expect = 8e-09 Identities = 53/59 (89%) Strand = Plus / Minus Query: 332 gacagtgctgaaaatctgggtgaagttctccgtggggatcgcattgagaactctccata 390 ||||||||| ||||||| ||||||||||| ||||| ||||| || |||||||||||||| Sbjct: 10618011 gacagtgctcaaaatctcggtgaagttcttcgtggtgatcgaatcgagaactctccata 10617953 Score = 65.9 bits (33), Expect = 1e-07 Identities = 33/33 (100%) Strand = Plus / Plus Query: 191 ttctacctccccggcgtcgcgcccaacgacttc 223 ||||||||||||||||||||||||||||||||| Sbjct: 27783144 ttctacctccccggcgtcgcgcccaacgacttc 27783176 Score = 65.9 bits (33), Expect = 1e-07 Identities = 33/33 (100%) Strand = Plus / Plus Query: 191 ttctacctccccggcgtcgcgcccaacgacttc 223 ||||||||||||||||||||||||||||||||| Sbjct: 27763949 ttctacctccccggcgtcgcgcccaacgacttc 27763981 Score = 65.9 bits (33), Expect = 1e-07 Identities = 33/33 (100%) Strand = Plus / Plus Query: 191 ttctacctccccggcgtcgcgcccaacgacttc 223 ||||||||||||||||||||||||||||||||| Sbjct: 27754850 ttctacctccccggcgtcgcgcccaacgacttc 27754882 Score = 61.9 bits (31), Expect = 2e-06 Identities = 40/43 (93%) Strand = Plus / Minus Query: 183 ccgccggattctacctccccggcgtcgcgcccaacgacttcga 225 ||||||| ||||||||||| ||||||||||||||| ||||||| Sbjct: 10618913 ccgccgggttctacctcccaggcgtcgcgcccaacaacttcga 10618871 Score = 60.0 bits (30), Expect = 8e-06 Identities = 45/50 (90%) Strand = Plus / Minus Query: 500 aacatgattcttgacaatctacctctagttgttcctattcaaagagtgga 549 ||||||||||||||||| |||||||||||||||| ||| ||||| |||| Sbjct: 10617677 aacatgattcttgacaacttacctctagttgttccaattaaaagaatgga 10617628 Score = 54.0 bits (27), Expect = 5e-04 Identities = 54/63 (85%) Strand = Plus / Plus Query: 443 gttggggaaaaagaaggaaagggtctcaaggaaaagattgaagatgagtaccgtgtgaac 502 ||||| |||||||||| |||| || | ||| ||||| ||||||||||||||||||||| Sbjct: 27787789 gttggagaaaaagaagcgaaggagctgacggagaagatggaagatgagtaccgtgtgaac 27787848 Query: 503 atg 505 ||| Sbjct: 27787849 atg 27787851 Score = 54.0 bits (27), Expect = 5e-04 Identities = 42/47 (89%) Strand = Plus / Minus Query: 245 gtgaaagtcaataaactgacttcaattaagacacagcttccctactc 291 ||||||||||| ||| |||| ||||| ||||| |||||||||||||| Sbjct: 10618065 gtgaaagtcaacaaattgacatcaatcaagacccagcttccctactc 10618019 Score = 48.1 bits (24), Expect = 0.031 Identities = 33/36 (91%) Strand = Plus / Plus Query: 470 aaggaaaagattgaagatgagtaccgtgtgaacatg 505 ||||||||||| || ||||||||||| ||||||||| Sbjct: 27784652 aaggaaaagatagaggatgagtaccgggtgaacatg 27784687 Score = 48.1 bits (24), Expect = 0.031 Identities = 33/36 (91%) Strand = Plus / Plus Query: 470 aaggaaaagattgaagatgagtaccgtgtgaacatg 505 ||||||||||| || ||||||||||| ||||||||| Sbjct: 27765298 aaggaaaagatagaggatgagtaccgggtgaacatg 27765333 Score = 48.1 bits (24), Expect = 0.031 Identities = 33/36 (91%) Strand = Plus / Plus Query: 470 aaggaaaagattgaagatgagtaccgtgtgaacatg 505 ||||||||||| || ||||||||||| ||||||||| Sbjct: 27756359 aaggaaaagatagaggatgagtaccgggtgaacatg 27756394
>dbj|AP004158.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 8, BAC clone:OJ1118_F05 Length = 134247 Score = 129 bits (65), Expect = 1e-26 Identities = 102/113 (90%), Gaps = 1/113 (0%) Strand = Plus / Minus Query: 394 gtttgaaatgagggtacctcagatg-tgtcaaatagtctgcaagatttcagttggggaaa 452 |||||||||||| | ||||| ||| ||||||||||||||||||||||| || ||||| | Sbjct: 45506 gtttgaaatgagagagcctcaaatgctgtcaaatagtctgcaagatttctgtcggggaga 45447 Query: 453 aagaaggaaagggtctcaaggaaaagattgaagatgagtaccgtgtgaacatg 505 |||||| |||| |||||||||||||||||||||||||||||||||||||||| Sbjct: 45446 aagaagcaaagattctcaaggaaaagattgaagatgagtaccgtgtgaacatg 45394 Score = 69.9 bits (35), Expect = 8e-09 Identities = 53/59 (89%) Strand = Plus / Minus Query: 332 gacagtgctgaaaatctgggtgaagttctccgtggggatcgcattgagaactctccata 390 ||||||||| ||||||| ||||||||||| ||||| ||||| || |||||||||||||| Sbjct: 45651 gacagtgctcaaaatctcggtgaagttcttcgtggtgatcgaatcgagaactctccata 45593 Score = 61.9 bits (31), Expect = 2e-06 Identities = 40/43 (93%) Strand = Plus / Minus Query: 183 ccgccggattctacctccccggcgtcgcgcccaacgacttcga 225 ||||||| ||||||||||| ||||||||||||||| ||||||| Sbjct: 46553 ccgccgggttctacctcccaggcgtcgcgcccaacaacttcga 46511 Score = 60.0 bits (30), Expect = 8e-06 Identities = 45/50 (90%) Strand = Plus / Minus Query: 500 aacatgattcttgacaatctacctctagttgttcctattcaaagagtgga 549 ||||||||||||||||| |||||||||||||||| ||| ||||| |||| Sbjct: 45317 aacatgattcttgacaacttacctctagttgttccaattaaaagaatgga 45268 Score = 54.0 bits (27), Expect = 5e-04 Identities = 42/47 (89%) Strand = Plus / Minus Query: 245 gtgaaagtcaataaactgacttcaattaagacacagcttccctactc 291 ||||||||||| ||| |||| ||||| ||||| |||||||||||||| Sbjct: 45705 gtgaaagtcaacaaattgacatcaatcaagacccagcttccctactc 45659
>gb|AC137592.2| Oryza sativa (Japonica cultiva-group) chromosome 9 BAC clone OSJNBa0035B22, complete sequence Length = 155788 Score = 109 bits (55), Expect = 1e-20 Identities = 79/87 (90%) Strand = Plus / Plus Query: 308 ttctgtaagccagatacgattgttgacagtgctgaaaatctgggtgaagttctccgtggg 367 ||||| |||||||| || || |||||||||||||||||||| ||||| ||||| ||||| Sbjct: 73874 ttctgcaagccagaaactatcgttgacagtgctgaaaatctcggtgaggttcttcgtggt 73933 Query: 368 gatcgcattgagaactctccatatgtg 394 ||||||||||||||||||||||||||| Sbjct: 73934 gatcgcattgagaactctccatatgtg 73960 Score = 54.0 bits (27), Expect = 5e-04 Identities = 54/63 (85%) Strand = Plus / Plus Query: 443 gttggggaaaaagaaggaaagggtctcaaggaaaagattgaagatgagtaccgtgtgaac 502 ||||| || ||||||| ||||| |||||||||||||| || ||||| || ||||||||| Sbjct: 74103 gttggtgagaaagaagcaaaggagctcaaggaaaagatagaggatgaatatcgtgtgaac 74162 Query: 503 atg 505 ||| Sbjct: 74163 atg 74165 Score = 52.0 bits (26), Expect = 0.002 Identities = 38/42 (90%) Strand = Plus / Plus Query: 183 ccgccggattctacctccccggcgtcgcgcccaacgacttcg 224 ||||||| |||||||| ||||||||||| |||| |||||||| Sbjct: 72671 ccgccgggttctacctgcccggcgtcgcccccaccgacttcg 72712 Score = 40.1 bits (20), Expect = 7.5 Identities = 26/28 (92%) Strand = Plus / Plus Query: 505 gattcttgacaatctacctctagttgtt 532 ||||||||||||||| || ||||||||| Sbjct: 74236 gattcttgacaatctcccgctagttgtt 74263
>dbj|AP008215.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 9, complete sequence Length = 22696651 Score = 109 bits (55), Expect = 1e-20 Identities = 79/87 (90%) Strand = Plus / Plus Query: 308 ttctgtaagccagatacgattgttgacagtgctgaaaatctgggtgaagttctccgtggg 367 ||||| |||||||| || || |||||||||||||||||||| ||||| ||||| ||||| Sbjct: 21868440 ttctgcaagccagaaactatcgttgacagtgctgaaaatctcggtgaggttcttcgtggt 21868499 Query: 368 gatcgcattgagaactctccatatgtg 394 ||||||||||||||||||||||||||| Sbjct: 21868500 gatcgcattgagaactctccatatgtg 21868526 Score = 54.0 bits (27), Expect = 5e-04 Identities = 54/63 (85%) Strand = Plus / Plus Query: 443 gttggggaaaaagaaggaaagggtctcaaggaaaagattgaagatgagtaccgtgtgaac 502 ||||| || ||||||| ||||| |||||||||||||| || ||||| || ||||||||| Sbjct: 21868669 gttggtgagaaagaagcaaaggagctcaaggaaaagatagaggatgaatatcgtgtgaac 21868728 Query: 503 atg 505 ||| Sbjct: 21868729 atg 21868731 Score = 52.0 bits (26), Expect = 0.002 Identities = 38/42 (90%) Strand = Plus / Plus Query: 183 ccgccggattctacctccccggcgtcgcgcccaacgacttcg 224 ||||||| |||||||| ||||||||||| |||| |||||||| Sbjct: 21867237 ccgccgggttctacctgcccggcgtcgcccccaccgacttcg 21867278 Score = 40.1 bits (20), Expect = 7.5 Identities = 26/28 (92%) Strand = Plus / Plus Query: 505 gattcttgacaatctacctctagttgtt 532 ||||||||||||||| || ||||||||| Sbjct: 21868802 gattcttgacaatctcccgctagttgtt 21868829
>dbj|AP004044.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 8, BAC clone:OJ1125_C01 Length = 123849 Score = 101 bits (51), Expect = 2e-18 Identities = 78/87 (89%) Strand = Plus / Plus Query: 308 ttctgtaagccagatacgattgttgacagtgctgaaaatctgggtgaagttctccgtggg 367 ||||| |||||||||||||| ||||||||||| |||||||| || |||||||| ||||| Sbjct: 117321 ttctgcaagccagatacgatagttgacagtgcagaaaatcttggagaagttctacgtggt 117380 Query: 368 gatcgcattgagaactctccatatgtg 394 |||||||||||||| ||||| |||||| Sbjct: 117381 gatcgcattgagaattctccttatgtg 117407 Score = 101 bits (51), Expect = 2e-18 Identities = 78/87 (89%) Strand = Plus / Plus Query: 308 ttctgtaagccagatacgattgttgacagtgctgaaaatctgggtgaagttctccgtggg 367 ||||| |||||||||||||| ||||||||||| |||||||| || |||||||| ||||| Sbjct: 89028 ttctgcaagccagatacgatagttgacagtgcagaaaatcttggagaagttctacgtggt 89087 Query: 368 gatcgcattgagaactctccatatgtg 394 |||||||||||||| ||||| |||||| Sbjct: 89088 gatcgcattgagaattctccttatgtg 89114 Score = 95.6 bits (48), Expect = 1e-16 Identities = 72/80 (90%) Strand = Plus / Plus Query: 308 ttctgtaagccagatacgattgttgacagtgctgaaaatctgggtgaagttctccgtggg 367 ||||| |||||||||||||| ||||||||||| |||||||| || |||||||| ||||| Sbjct: 97967 ttctgcaagccagatacgatagttgacagtgcagaaaatcttggagaagttctacgtggt 98026 Query: 368 gatcgcattgagaactctcc 387 |||||||||||||| ||||| Sbjct: 98027 gatcgcattgagaattctcc 98046 Score = 65.9 bits (33), Expect = 1e-07 Identities = 33/33 (100%) Strand = Plus / Plus Query: 191 ttctacctccccggcgtcgcgcccaacgacttc 223 ||||||||||||||||||||||||||||||||| Sbjct: 116066 ttctacctccccggcgtcgcgcccaacgacttc 116098 Score = 65.9 bits (33), Expect = 1e-07 Identities = 33/33 (100%) Strand = Plus / Plus Query: 191 ttctacctccccggcgtcgcgcccaacgacttc 223 ||||||||||||||||||||||||||||||||| Sbjct: 96871 ttctacctccccggcgtcgcgcccaacgacttc 96903 Score = 65.9 bits (33), Expect = 1e-07 Identities = 33/33 (100%) Strand = Plus / Plus Query: 191 ttctacctccccggcgtcgcgcccaacgacttc 223 ||||||||||||||||||||||||||||||||| Sbjct: 87772 ttctacctccccggcgtcgcgcccaacgacttc 87804 Score = 54.0 bits (27), Expect = 5e-04 Identities = 54/63 (85%) Strand = Plus / Plus Query: 443 gttggggaaaaagaaggaaagggtctcaaggaaaagattgaagatgagtaccgtgtgaac 502 ||||| |||||||||| |||| || | ||| ||||| ||||||||||||||||||||| Sbjct: 120711 gttggagaaaaagaagcgaaggagctgacggagaagatggaagatgagtaccgtgtgaac 120770 Query: 503 atg 505 ||| Sbjct: 120771 atg 120773 Score = 48.1 bits (24), Expect = 0.031 Identities = 33/36 (91%) Strand = Plus / Plus Query: 470 aaggaaaagattgaagatgagtaccgtgtgaacatg 505 ||||||||||| || ||||||||||| ||||||||| Sbjct: 117574 aaggaaaagatagaggatgagtaccgggtgaacatg 117609 Score = 48.1 bits (24), Expect = 0.031 Identities = 33/36 (91%) Strand = Plus / Plus Query: 470 aaggaaaagattgaagatgagtaccgtgtgaacatg 505 ||||||||||| || ||||||||||| ||||||||| Sbjct: 98220 aaggaaaagatagaggatgagtaccgggtgaacatg 98255 Score = 48.1 bits (24), Expect = 0.031 Identities = 33/36 (91%) Strand = Plus / Plus Query: 470 aaggaaaagattgaagatgagtaccgtgtgaacatg 505 ||||||||||| || ||||||||||| ||||||||| Sbjct: 89281 aaggaaaagatagaggatgagtaccgggtgaacatg 89316
>dbj|AP005480.2| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 8, PAC clone:P0439B07 Length = 89475 Score = 101 bits (51), Expect = 2e-18 Identities = 78/87 (89%) Strand = Plus / Plus Query: 308 ttctgtaagccagatacgattgttgacagtgctgaaaatctgggtgaagttctccgtggg 367 ||||| |||||||||||||| ||||||||||| |||||||| || |||||||| ||||| Sbjct: 38856 ttctgcaagccagatacgatagttgacagtgcagaaaatcttggagaagttctacgtggt 38915 Query: 368 gatcgcattgagaactctccatatgtg 394 |||||||||||||| ||||| |||||| Sbjct: 38916 gatcgcattgagaattctccttatgtg 38942 Score = 101 bits (51), Expect = 2e-18 Identities = 78/87 (89%) Strand = Plus / Plus Query: 308 ttctgtaagccagatacgattgttgacagtgctgaaaatctgggtgaagttctccgtggg 367 ||||| |||||||||||||| ||||||||||| |||||||| || |||||||| ||||| Sbjct: 10563 ttctgcaagccagatacgatagttgacagtgcagaaaatcttggagaagttctacgtggt 10622 Query: 368 gatcgcattgagaactctccatatgtg 394 |||||||||||||| ||||| |||||| Sbjct: 10623 gatcgcattgagaattctccttatgtg 10649 Score = 95.6 bits (48), Expect = 1e-16 Identities = 72/80 (90%) Strand = Plus / Plus Query: 308 ttctgtaagccagatacgattgttgacagtgctgaaaatctgggtgaagttctccgtggg 367 ||||| |||||||||||||| ||||||||||| |||||||| || |||||||| ||||| Sbjct: 19502 ttctgcaagccagatacgatagttgacagtgcagaaaatcttggagaagttctacgtggt 19561 Query: 368 gatcgcattgagaactctcc 387 |||||||||||||| ||||| Sbjct: 19562 gatcgcattgagaattctcc 19581 Score = 65.9 bits (33), Expect = 1e-07 Identities = 33/33 (100%) Strand = Plus / Plus Query: 191 ttctacctccccggcgtcgcgcccaacgacttc 223 ||||||||||||||||||||||||||||||||| Sbjct: 37601 ttctacctccccggcgtcgcgcccaacgacttc 37633 Score = 65.9 bits (33), Expect = 1e-07 Identities = 33/33 (100%) Strand = Plus / Plus Query: 191 ttctacctccccggcgtcgcgcccaacgacttc 223 ||||||||||||||||||||||||||||||||| Sbjct: 18406 ttctacctccccggcgtcgcgcccaacgacttc 18438 Score = 65.9 bits (33), Expect = 1e-07 Identities = 33/33 (100%) Strand = Plus / Plus Query: 191 ttctacctccccggcgtcgcgcccaacgacttc 223 ||||||||||||||||||||||||||||||||| Sbjct: 9307 ttctacctccccggcgtcgcgcccaacgacttc 9339 Score = 54.0 bits (27), Expect = 5e-04 Identities = 54/63 (85%) Strand = Plus / Plus Query: 443 gttggggaaaaagaaggaaagggtctcaaggaaaagattgaagatgagtaccgtgtgaac 502 ||||| |||||||||| |||| || | ||| ||||| ||||||||||||||||||||| Sbjct: 42246 gttggagaaaaagaagcgaaggagctgacggagaagatggaagatgagtaccgtgtgaac 42305 Query: 503 atg 505 ||| Sbjct: 42306 atg 42308 Score = 48.1 bits (24), Expect = 0.031 Identities = 33/36 (91%) Strand = Plus / Plus Query: 470 aaggaaaagattgaagatgagtaccgtgtgaacatg 505 ||||||||||| || ||||||||||| ||||||||| Sbjct: 39109 aaggaaaagatagaggatgagtaccgggtgaacatg 39144 Score = 48.1 bits (24), Expect = 0.031 Identities = 33/36 (91%) Strand = Plus / Plus Query: 470 aaggaaaagattgaagatgagtaccgtgtgaacatg 505 ||||||||||| || ||||||||||| ||||||||| Sbjct: 19755 aaggaaaagatagaggatgagtaccgggtgaacatg 19790 Score = 48.1 bits (24), Expect = 0.031 Identities = 33/36 (91%) Strand = Plus / Plus Query: 470 aaggaaaagattgaagatgagtaccgtgtgaacatg 505 ||||||||||| || ||||||||||| ||||||||| Sbjct: 10816 aaggaaaagatagaggatgagtaccgggtgaacatg 10851
>ref|NM_127978.2| Arabidopsis thaliana transporter AT2G24170 mRNA, complete cds Length = 2169 Score = 95.6 bits (48), Expect = 1e-16 Identities = 84/96 (87%) Strand = Plus / Plus Query: 326 attgttgacagtgctgaaaatctgggtgaagttctccgtggggatcgcattgagaactct 385 |||||||| |||||||| ||||| ||||||||||| ||||| ||||| |||||||||||| Sbjct: 297 attgttgatagtgctgagaatctcggtgaagttcttcgtggtgatcgaattgagaactct 356 Query: 386 ccatatgtgtttgaaatgagggtacctcagatgtgt 421 || | ||||||| ||||||||| | | ||||||||| Sbjct: 357 ccttttgtgtttaaaatgagggaatcgcagatgtgt 392
>gb|AY091067.1| Arabidopsis thaliana putative multispanning membrane protein (At2g24170) mRNA, complete cds Length = 2138 Score = 95.6 bits (48), Expect = 1e-16 Identities = 84/96 (87%) Strand = Plus / Plus Query: 326 attgttgacagtgctgaaaatctgggtgaagttctccgtggggatcgcattgagaactct 385 |||||||| |||||||| ||||| ||||||||||| ||||| ||||| |||||||||||| Sbjct: 297 attgttgatagtgctgagaatctcggtgaagttcttcgtggtgatcgaattgagaactct 356 Query: 386 ccatatgtgtttgaaatgagggtacctcagatgtgt 421 || | ||||||| ||||||||| | | ||||||||| Sbjct: 357 ccctttgtgtttaaaatgagggaatcgcagatgtgt 392
>gb|BT013512.1| Lycopersicon esculentum clone 132227F, mRNA sequence Length = 2358 Score = 75.8 bits (38), Expect = 1e-10 Identities = 56/62 (90%) Strand = Plus / Plus Query: 326 attgttgacagtgctgaaaatctgggtgaagttctccgtggggatcgcattgagaactct 385 |||||||||||||| || ||||| ||||||||||| ||||| ||||| |||||||||||| Sbjct: 352 attgttgacagtgcagagaatcttggtgaagttcttcgtggtgatcgtattgagaactct 411 Query: 386 cc 387 || Sbjct: 412 cc 413 Score = 44.1 bits (22), Expect = 0.48 Identities = 43/50 (86%) Strand = Plus / Plus Query: 476 aagattgaagatgagtaccgtgtgaacatgattcttgacaatctacctct 525 ||||||||||||||||| || || |||||||| | |||||||| ||||| Sbjct: 502 aagattgaagatgagtatcgggtcaacatgatcttggacaatcttcctct 551
>gb|AC005967.3| Arabidopsis thaliana chromosome 2 clone F27D4 map CIC06C07, complete sequence Length = 96046 Score = 75.8 bits (38), Expect = 1e-10 Identities = 56/62 (90%) Strand = Plus / Minus Query: 326 attgttgacagtgctgaaaatctgggtgaagttctccgtggggatcgcattgagaactct 385 |||||||| |||||||| ||||| ||||||||||| ||||| ||||| |||||||||||| Sbjct: 35311 attgttgatagtgctgagaatctcggtgaagttcttcgtggtgatcgaattgagaactct 35252 Query: 386 cc 387 || Sbjct: 35251 cc 35250
>gb|AY022750.1| Oryza sativa microsatellite MRG5075 containing (CCT)X8, closest to marker RG745, genomic sequence Length = 224 Score = 65.9 bits (33), Expect = 1e-07 Identities = 33/33 (100%) Strand = Plus / Plus Query: 191 ttctacctccccggcgtcgcgcccaacgacttc 223 ||||||||||||||||||||||||||||||||| Sbjct: 46 ttctacctccccggcgtcgcgcccaacgacttc 78
>ref|NM_121122.2| Arabidopsis thaliana transporter AT5G10840 mRNA, complete cds Length = 1984 Score = 60.0 bits (30), Expect = 8e-06 Identities = 63/74 (85%) Strand = Plus / Plus Query: 473 gaaaagattgaagatgagtaccgtgtgaacatgattcttgacaatctacctctagttgtt 532 |||||||| || ||||||||||| || |||||||| || ||||| || ||||| |||||| Sbjct: 419 gaaaagatcgatgatgagtaccgggtcaacatgatcctcgacaaccttcctctggttgtt 478 Query: 533 cctattcaaagagt 546 || ||| ||||||| Sbjct: 479 ccaattgaaagagt 492
>ref|XM_483727.1| Oryza sativa (japonica cultivar-group), mRNA Length = 1851 Score = 60.0 bits (30), Expect = 8e-06 Identities = 63/74 (85%) Strand = Plus / Plus Query: 443 gttggggaaaaagaaggaaagggtctcaaggaaaagattgaagatgagtaccgtgtgaac 502 ||||| |||||||||| |||| || | ||| ||||| ||||||||||||||||||||| Sbjct: 319 gttggagaaaaagaagcgaaggagctgacggagaagatggaagatgagtaccgtgtgaac 378 Query: 503 atgattcttgacaa 516 ||| ||||||||| Sbjct: 379 atggctcttgacaa 392
>gb|AC143339.12| Medicago truncatula clone mth2-20g20, complete sequence Length = 99993 Score = 48.1 bits (24), Expect = 0.031 Identities = 39/44 (88%) Strand = Plus / Plus Query: 335 agtgctgaaaatctgggtgaagttctccgtggggatcgcattga 378 |||||||||||||| || ||||| |||||||| ||||| ||||| Sbjct: 18940 agtgctgaaaatcttggagaagtgctccgtggtgatcgtattga 18983
>ref|NM_122419.2| Arabidopsis thaliana transporter AT5G25100 mRNA, complete cds Length = 2303 Score = 44.1 bits (22), Expect = 0.48 Identities = 37/42 (88%) Strand = Plus / Plus Query: 325 gattgttgacagtgctgaaaatctgggtgaagttctccgtgg 366 |||||| |||||| |||| ||||| ||||||||||| ||||| Sbjct: 313 gattgtggacagtactgagaatcttggtgaagttcttcgtgg 354
>gb|CP000148.1| Geobacter metallireducens GS-15, complete genome Length = 3997420 Score = 44.1 bits (22), Expect = 0.48 Identities = 22/22 (100%) Strand = Plus / Plus Query: 109 gacgatatcgctgccggcaacg 130 |||||||||||||||||||||| Sbjct: 2301011 gacgatatcgctgccggcaacg 2301032
>gb|AC005964.1| Arabidopsis thaliana chromosome V map 60.5 cM, complete sequence Length = 91916 Score = 44.1 bits (22), Expect = 0.48 Identities = 37/42 (88%) Strand = Plus / Minus Query: 325 gattgttgacagtgctgaaaatctgggtgaagttctccgtgg 366 |||||| |||||| |||| ||||| ||||||||||| ||||| Sbjct: 54200 gattgtggacagtactgagaatcttggtgaagttcttcgtgg 54159
>gb|AF360135.1| Arabidopsis thaliana putative multispanning membrane protein (At5g25100) mRNA, complete cds Length = 2296 Score = 44.1 bits (22), Expect = 0.48 Identities = 37/42 (88%) Strand = Plus / Plus Query: 325 gattgttgacagtgctgaaaatctgggtgaagttctccgtgg 366 |||||| |||||| |||| ||||| ||||||||||| ||||| Sbjct: 313 gattgtggacagtactgagaatcttggtgaagttcttcgtgg 354
>dbj|AP008212.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 6, complete sequence Length = 30731886 Score = 44.1 bits (22), Expect = 0.48 Identities = 34/38 (89%) Strand = Plus / Minus Query: 468 tcaaggaaaagattgaagatgagtaccgtgtgaacatg 505 |||| ||||||||||| |||||||| || ||||||||| Sbjct: 21609877 tcaaagaaaagattgacgatgagtatcgagtgaacatg 21609840 Score = 42.1 bits (21), Expect = 1.9 Identities = 30/33 (90%) Strand = Plus / Plus Query: 191 ttctacctccccggcgtcgcgcccaacgacttc 223 |||||||||||||||||||| ||| ||||||| Sbjct: 26248456 ttctacctccccggcgtcgccccccgcgacttc 26248488 Score = 42.1 bits (21), Expect = 1.9 Identities = 30/33 (90%) Strand = Plus / Minus Query: 353 gaagttctccgtggggatcgcattgagaactct 385 ||||| || ||||||||||||||||| |||||| Sbjct: 21610134 gaagtccttcgtggggatcgcattgaaaactct 21610102 Score = 40.1 bits (20), Expect = 7.5 Identities = 20/20 (100%) Strand = Plus / Minus Query: 191 ttctacctccccggcgtcgc 210 |||||||||||||||||||| Sbjct: 21611698 ttctacctccccggcgtcgc 21611679
>dbj|AP005458.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 6, PAC clone:P0567G03 Length = 196834 Score = 44.1 bits (22), Expect = 0.48 Identities = 34/38 (89%) Strand = Plus / Minus Query: 468 tcaaggaaaagattgaagatgagtaccgtgtgaacatg 505 |||| ||||||||||| |||||||| || ||||||||| Sbjct: 167061 tcaaagaaaagattgacgatgagtatcgagtgaacatg 167024 Score = 42.1 bits (21), Expect = 1.9 Identities = 30/33 (90%) Strand = Plus / Minus Query: 353 gaagttctccgtggggatcgcattgagaactct 385 ||||| || ||||||||||||||||| |||||| Sbjct: 167318 gaagtccttcgtggggatcgcattgaaaactct 167286 Score = 40.1 bits (20), Expect = 7.5 Identities = 20/20 (100%) Strand = Plus / Minus Query: 191 ttctacctccccggcgtcgc 210 |||||||||||||||||||| Sbjct: 168882 ttctacctccccggcgtcgc 168863
>dbj|AP005471.2| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 6, BAC clone:OSJNBa0062E01 Length = 161804 Score = 44.1 bits (22), Expect = 0.48 Identities = 34/38 (89%) Strand = Plus / Minus Query: 468 tcaaggaaaagattgaagatgagtaccgtgtgaacatg 505 |||| ||||||||||| |||||||| || ||||||||| Sbjct: 8808 tcaaagaaaagattgacgatgagtatcgagtgaacatg 8771 Score = 42.1 bits (21), Expect = 1.9 Identities = 30/33 (90%) Strand = Plus / Minus Query: 353 gaagttctccgtggggatcgcattgagaactct 385 ||||| || ||||||||||||||||| |||||| Sbjct: 9065 gaagtccttcgtggggatcgcattgaaaactct 9033 Score = 40.1 bits (20), Expect = 7.5 Identities = 20/20 (100%) Strand = Plus / Minus Query: 191 ttctacctccccggcgtcgc 210 |||||||||||||||||||| Sbjct: 10629 ttctacctccccggcgtcgc 10610
>dbj|AK066545.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013069A19, full insert sequence Length = 2291 Score = 44.1 bits (22), Expect = 0.48 Identities = 97/122 (79%) Strand = Plus / Plus Query: 191 ttctacctccccggcgtcgcgcccaacgacttcgaaaagaaagaccatctccctgtgaaa 250 |||||||||||||||||||| ||| ||||||| ||||| ||||| || | ||||| Sbjct: 171 ttctacctccccggcgtcgccccccgcgacttccgcaagaaggaccagctggcggtgaag 230 Query: 251 gtcaataaactgacttcaattaagacacagcttccctactccttctactctctcccattc 310 || || | |||| || || ||||| ||||| |||||||||| |||||| ||||| ||| Sbjct: 231 gtgaaccagctgagctcgatcaagacgcagctgccctactcctactactccctccccttc 290 Query: 311 tg 312 || Sbjct: 291 tg 292
>emb|CR855301.19| Zebrafish DNA sequence from clone CH211-193K8 in linkage group 17, complete sequence Length = 149563 Score = 44.1 bits (22), Expect = 0.48 Identities = 22/22 (100%) Strand = Plus / Plus Query: 434 aagatttcagttggggaaaaag 455 |||||||||||||||||||||| Sbjct: 7316 aagatttcagttggggaaaaag 7337
>ref|XM_755666.1| Ustilago maydis 521 hypothetical protein (UM04612.1) partial mRNA Length = 1953 Score = 42.1 bits (21), Expect = 1.9 Identities = 21/21 (100%) Strand = Plus / Plus Query: 465 gtctcaaggaaaagattgaag 485 ||||||||||||||||||||| Sbjct: 557 gtctcaaggaaaagattgaag 577
>gb|AC147712.17| Medicago truncatula clone mth2-34f1, complete sequence Length = 136410 Score = 42.1 bits (21), Expect = 1.9 Identities = 24/25 (96%) Strand = Plus / Minus Query: 66 cgctcgagcgaaccgtgagcgaacc 90 ||||| ||||||||||||||||||| Sbjct: 33924 cgctcaagcgaaccgtgagcgaacc 33900
>gb|AC107204.4| Homo sapiens 3p BAC RP11-655A17 (Roswell Park Cancer Institute Human BAC Library) complete sequence Length = 170799 Score = 42.1 bits (21), Expect = 1.9 Identities = 21/21 (100%) Strand = Plus / Plus Query: 299 tctctcccattctgtaagcca 319 ||||||||||||||||||||| Sbjct: 41882 tctctcccattctgtaagcca 41902
>emb|AL109966.36|HSJ599G15 Human DNA sequence from clone RP4-599G15 on chromosome 1p12-13.2 Contains the 5' end of a glyceraldehyde-3-phosphate dehydrogenase (GAPD) pseudogene, two hydroxy-delta-5-steroid dehydrogenase 3 beta- and steroid delta-isomerase family (HSD3B) pseudogenes, a glyceraldehyde-3-phosphate dehydrogenase (GAPD) pseudogene, a novel gene, a novel gene (MGC45731), the 5' end of the PHGDH gene for phosphoglycerate dehydrogenase and a CpG island, complete sequence Length = 112616 Score = 42.1 bits (21), Expect = 1.9 Identities = 21/21 (100%) Strand = Plus / Minus Query: 382 ctctccatatgtgtttgaaat 402 ||||||||||||||||||||| Sbjct: 77250 ctctccatatgtgtttgaaat 77230
>gb|AC108709.3| Homo sapiens 3 BAC RP11-81P15 (Roswell Park Cancer Institute Human BAC Library) complete sequence Length = 179223 Score = 42.1 bits (21), Expect = 1.9 Identities = 21/21 (100%) Strand = Plus / Plus Query: 299 tctctcccattctgtaagcca 319 ||||||||||||||||||||| Sbjct: 97042 tctctcccattctgtaagcca 97062
>gb|AF353427.1| Streptopelia bitorquata NADH dehydrogenase subunit 2 gene, complete cds; mitochondrial gene for mitochondrial product Length = 1066 Score = 42.1 bits (21), Expect = 1.9 Identities = 24/25 (96%) Strand = Plus / Plus Query: 284 ccctactccttctactctctcccat 308 |||||||||||| |||||||||||| Sbjct: 999 ccctactccttccactctctcccat 1023
>gb|AF353426.1| Streptopelia orientalis NADH dehydrogenase subunit 2 gene, complete cds; mitochondrial gene for mitochondrial product Length = 1066 Score = 42.1 bits (21), Expect = 1.9 Identities = 24/25 (96%) Strand = Plus / Plus Query: 284 ccctactccttctactctctcccat 308 |||||||||||| |||||||||||| Sbjct: 999 ccctactccttccactctctcccat 1023
>gb|AF353425.1| Streptopelia turtur NADH dehydrogenase subunit 2 gene, complete cds; mitochondrial gene for mitochondrial product Length = 1066 Score = 42.1 bits (21), Expect = 1.9 Identities = 24/25 (96%) Strand = Plus / Plus Query: 284 ccctactccttctactctctcccat 308 |||||||||||| |||||||||||| Sbjct: 999 ccctactccttccactctctcccat 1023
>gb|AF353424.1| Streptopelia hypopyrrha NADH dehydrogenase subunit 2 gene, complete cds; mitochondrial gene for mitochondrial product Length = 1066 Score = 42.1 bits (21), Expect = 1.9 Identities = 24/25 (96%) Strand = Plus / Plus Query: 284 ccctactccttctactctctcccat 308 |||||||||||| |||||||||||| Sbjct: 999 ccctactccttccactctctcccat 1023
>gb|AF353422.1| Streptopelia capicola NADH dehydrogenase subunit 2 gene, complete cds; mitochondrial gene for mitochondrial product Length = 1066 Score = 42.1 bits (21), Expect = 1.9 Identities = 24/25 (96%) Strand = Plus / Plus Query: 284 ccctactccttctactctctcccat 308 |||||||||||| |||||||||||| Sbjct: 999 ccctactccttccactctctcccat 1023
>gb|AF353420.1| Streptopelia decipiens NADH dehydrogenase subunit 2 gene, complete cds; mitochondrial gene for mitochondrial product Length = 1043 Score = 42.1 bits (21), Expect = 1.9 Identities = 24/25 (96%) Strand = Plus / Plus Query: 284 ccctactccttctactctctcccat 308 |||||||||||| |||||||||||| Sbjct: 999 ccctactccttccactctctcccat 1023
>gb|AC157506.3| Medicago truncatula chromosome 7 BAC clone mth2-50e7, complete sequence Length = 127666 Score = 42.1 bits (21), Expect = 1.9 Identities = 24/25 (96%) Strand = Plus / Plus Query: 66 cgctcgagcgaaccgtgagcgaacc 90 ||||| ||||||||||||||||||| Sbjct: 95343 cgctcaagcgaaccgtgagcgaacc 95367 Score = 42.1 bits (21), Expect = 1.9 Identities = 24/25 (96%) Strand = Plus / Plus Query: 66 cgctcgagcgaaccgtgagcgaacc 90 ||||| ||||||||||||||||||| Sbjct: 80811 cgctcaagcgaaccgtgagcgaacc 80835
>gb|AC137633.2| Homo sapiens 12 BAC RP11-113I1 (Roswell Park Cancer Institute Human BAC Library) complete sequence Length = 23301 Score = 42.1 bits (21), Expect = 1.9 Identities = 21/21 (100%) Strand = Plus / Plus Query: 431 tgcaagatttcagttggggaa 451 ||||||||||||||||||||| Sbjct: 15411 tgcaagatttcagttggggaa 15431
>dbj|AP005453.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 6, PAC clone:P0453H04 Length = 175047 Score = 42.1 bits (21), Expect = 1.9 Identities = 30/33 (90%) Strand = Plus / Plus Query: 191 ttctacctccccggcgtcgcgcccaacgacttc 223 |||||||||||||||||||| ||| ||||||| Sbjct: 112996 ttctacctccccggcgtcgccccccgcgacttc 113028
>gb|CP000031.1| Silicibacter pomeroyi DSS-3, complete genome Length = 4109442 Score = 40.1 bits (20), Expect = 7.5 Identities = 20/20 (100%) Strand = Plus / Plus Query: 104 cacatgacgatatcgctgcc 123 |||||||||||||||||||| Sbjct: 2773003 cacatgacgatatcgctgcc 2773022
>ref|NM_112228.1| Arabidopsis thaliana transporter AT3G13772 mRNA, complete cds Length = 2105 Score = 40.1 bits (20), Expect = 7.5 Identities = 44/52 (84%) Strand = Plus / Plus Query: 468 tcaaggaaaagattgaagatgagtaccgtgtgaacatgattcttgacaatct 519 |||||||||||||||| ||||| ||| | | || ||||||||||| ||||| Sbjct: 359 tcaaggaaaagattgatgatgaatacagggctaatatgattcttgataatct 410
>ref|XM_470384.1| Oryza sativa (japonica cultivar-group), mRNA Length = 4634 Score = 40.1 bits (20), Expect = 7.5 Identities = 23/24 (95%) Strand = Plus / Plus Query: 201 ccggcgtcgcgcccaacgacttcg 224 ||||||||||||| |||||||||| Sbjct: 324 ccggcgtcgcgccgaacgacttcg 347
>ref|XM_610350.2| PREDICTED: Bos taurus similar to X-linked neuroligin 4 (LOC531847), mRNA Length = 3038 Score = 40.1 bits (20), Expect = 7.5 Identities = 23/24 (95%) Strand = Plus / Plus Query: 202 cggcgtcgcgcccaacgacttcga 225 ||||||| |||||||||||||||| Sbjct: 1020 cggcgtcacgcccaacgacttcga 1043
>gb|AE009255.1| Agrobacterium tumefaciens str. C58 linear chromosome, section 25 of 187 of the complete sequence Length = 12045 Score = 40.1 bits (20), Expect = 7.5 Identities = 20/20 (100%) Strand = Plus / Plus Query: 114 tatcgctgccggcaacggcg 133 |||||||||||||||||||| Sbjct: 4005 tatcgctgccggcaacggcg 4024
>gb|AE008358.1| Agrobacterium tumefaciens str. C58 linear chromosome, section 162 of 187 of the complete sequence Length = 11377 Score = 40.1 bits (20), Expect = 7.5 Identities = 20/20 (100%) Strand = Plus / Minus Query: 114 tatcgctgccggcaacggcg 133 |||||||||||||||||||| Sbjct: 3456 tatcgctgccggcaacggcg 3437
>gb|DP000009.1| Oryza sativa (japonica cultivar-group) chromosome 3 Length = 36102668 Score = 40.1 bits (20), Expect = 7.5 Identities = 23/24 (95%) Strand = Plus / Plus Query: 201 ccggcgtcgcgcccaacgacttcg 224 ||||||||||||| |||||||||| Sbjct: 35170528 ccggcgtcgcgccgaacgacttcg 35170551
>gb|AC092852.6| Oryza sativa chromosome 3 BAC OSJNBa0032G11 genomic sequence, complete sequence Length = 156606 Score = 40.1 bits (20), Expect = 7.5 Identities = 23/24 (95%) Strand = Plus / Plus Query: 201 ccggcgtcgcgcccaacgacttcg 224 ||||||||||||| |||||||||| Sbjct: 49289 ccggcgtcgcgccgaacgacttcg 49312
>emb|CR381632.8| Zebrafish DNA sequence from clone DKEY-265M15 in linkage group 3, complete sequence Length = 171119 Score = 40.1 bits (20), Expect = 7.5 Identities = 20/20 (100%) Strand = Plus / Minus Query: 331 tgacagtgctgaaaatctgg 350 |||||||||||||||||||| Sbjct: 152953 tgacagtgctgaaaatctgg 152934
>emb|AL133232.15| Human DNA sequence from clone RP5-897D18 on chromosome 20 Contains part of a gene for a putative novel protein, EST, STSs and GSSs, complete sequence Length = 95097 Score = 40.1 bits (20), Expect = 7.5 Identities = 23/24 (95%) Strand = Plus / Plus Query: 459 gaaagggtctcaaggaaaagattg 482 |||||| ||||||||||||||||| Sbjct: 49672 gaaaggttctcaaggaaaagattg 49695
>emb|BX548041.14| Zebrafish DNA sequence from clone CH211-223G17 in linkage group 12, complete sequence Length = 123626 Score = 40.1 bits (20), Expect = 7.5 Identities = 20/20 (100%) Strand = Plus / Minus Query: 326 attgttgacagtgctgaaaa 345 |||||||||||||||||||| Sbjct: 20142 attgttgacagtgctgaaaa 20123
>gb|AC009123.7| Homo sapiens chromosome 16 clone RP11-486L19, complete sequence Length = 197046 Score = 40.1 bits (20), Expect = 7.5 Identities = 23/24 (95%) Strand = Plus / Minus Query: 467 ctcaaggaaaagattgaagatgag 490 ||||| |||||||||||||||||| Sbjct: 77471 ctcaaagaaaagattgaagatgag 77448
>gb|AC008836.6|AC008836 Homo sapiens chromosome 5 clone CTD-2150D9, complete sequence Length = 157492 Score = 40.1 bits (20), Expect = 7.5 Identities = 20/20 (100%) Strand = Plus / Minus Query: 460 aaagggtctcaaggaaaaga 479 |||||||||||||||||||| Sbjct: 129265 aaagggtctcaaggaaaaga 129246
>dbj|AK044628.1| Mus musculus adult retina cDNA, RIKEN full-length enriched library, clone:A930028E20 product:unclassifiable, full insert sequence Length = 4547 Score = 40.1 bits (20), Expect = 7.5 Identities = 23/24 (95%) Strand = Plus / Minus Query: 284 ccctactccttctactctctccca 307 ||||||||||||| |||||||||| Sbjct: 2650 ccctactccttcttctctctccca 2627
>dbj|AP008209.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 3, complete sequence Length = 36192742 Score = 40.1 bits (20), Expect = 7.5 Identities = 23/24 (95%) Strand = Plus / Plus Query: 201 ccggcgtcgcgcccaacgacttcg 224 ||||||||||||| |||||||||| Sbjct: 35260600 ccggcgtcgcgccgaacgacttcg 35260623
>dbj|AP008207.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, complete sequence Length = 43261740 Score = 40.1 bits (20), Expect = 7.5 Identities = 20/20 (100%) Strand = Plus / Minus Query: 438 tttcagttggggaaaaagaa 457 |||||||||||||||||||| Sbjct: 37544015 tttcagttggggaaaaagaa 37543996
>gb|AC147918.2| Xenopus tropicalis clone CH216-8N16, complete sequence Length = 210128 Score = 40.1 bits (20), Expect = 7.5 Identities = 20/20 (100%) Strand = Plus / Plus Query: 499 gaacatgattcttgacaatc 518 |||||||||||||||||||| Sbjct: 33135 gaacatgattcttgacaatc 33154
>dbj|AP003270.4| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, PAC clone:P0505D12 Length = 146951 Score = 40.1 bits (20), Expect = 7.5 Identities = 20/20 (100%) Strand = Plus / Minus Query: 438 tttcagttggggaaaaagaa 457 |||||||||||||||||||| Sbjct: 138552 tttcagttggggaaaaagaa 138533
>dbj|AP003286.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, PAC clone:P0677H08 Length = 178830 Score = 40.1 bits (20), Expect = 7.5 Identities = 20/20 (100%) Strand = Plus / Minus Query: 438 tttcagttggggaaaaagaa 457 |||||||||||||||||||| Sbjct: 4489 tttcagttggggaaaaagaa 4470
>dbj|AK065633.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013031L22, full insert sequence Length = 4635 Score = 40.1 bits (20), Expect = 7.5 Identities = 23/24 (95%) Strand = Plus / Plus Query: 201 ccggcgtcgcgcccaacgacttcg 224 ||||||||||||| |||||||||| Sbjct: 325 ccggcgtcgcgccgaacgacttcg 348
>gb|AC026762.17| Homo sapiens 3 BAC RP11-373C21 (Roswell Park Cancer Institute Human BAC Library) complete sequence Length = 54780 Score = 40.1 bits (20), Expect = 7.5 Identities = 20/20 (100%) Strand = Plus / Minus Query: 445 tggggaaaaagaaggaaagg 464 |||||||||||||||||||| Sbjct: 15772 tggggaaaaagaaggaaagg 15753
>emb|AL163952.5|CNS05TBP Human chromosome 14 DNA sequence BAC R-1012E15 of library RPCI-11 from chromosome 14 of Homo sapiens (Human), complete sequence Length = 196514 Score = 40.1 bits (20), Expect = 7.5 Identities = 20/20 (100%) Strand = Plus / Plus Query: 289 ctccttctactctctcccat 308 |||||||||||||||||||| Sbjct: 186291 ctccttctactctctcccat 186310
>emb|CT010459.8| M.truncatula DNA sequence from clone MTH2-35J4 on chromosome 3, complete sequence Length = 128491 Score = 40.1 bits (20), Expect = 7.5 Identities = 20/20 (100%) Strand = Plus / Plus Query: 71 gagcgaaccgtgagcgaacc 90 |||||||||||||||||||| Sbjct: 47147 gagcgaaccgtgagcgaacc 47166 Score = 40.1 bits (20), Expect = 7.5 Identities = 20/20 (100%) Strand = Plus / Plus Query: 71 gagcgaaccgtgagcgaacc 90 |||||||||||||||||||| Sbjct: 40477 gagcgaaccgtgagcgaacc 40496 Score = 40.1 bits (20), Expect = 7.5 Identities = 20/20 (100%) Strand = Plus / Plus Query: 71 gagcgaaccgtgagcgaacc 90 |||||||||||||||||||| Sbjct: 15388 gagcgaaccgtgagcgaacc 15407
>emb|AL645797.11| Mouse DNA sequence from clone RP23-153J5 on chromosome 11 Contains a novel gene and a CpG island, complete sequence Length = 190784 Score = 40.1 bits (20), Expect = 7.5 Identities = 23/24 (95%) Strand = Plus / Plus Query: 284 ccctactccttctactctctccca 307 ||||||||||||| |||||||||| Sbjct: 46841 ccctactccttcttctctctccca 46864
>emb|AL713885.1|CNS07YP2 Mus musculus chromosome 11 region in the Om locus area (D11Mit37-Scya6) clone 330D23 of library Caltech CITB-BAC from chromosome 11 of Mus musculus (mouse) Length = 181075 Score = 40.1 bits (20), Expect = 7.5 Identities = 23/24 (95%) Strand = Plus / Minus Query: 284 ccctactccttctactctctccca 307 ||||||||||||| |||||||||| Sbjct: 145261 ccctactccttcttctctctccca 145238
>emb|AL713884.1|CNS07YP1 Mus musculus chromosome 11 region in the Om locus area (D11Mit37-Scya6) clone 205M5 of library Caltech CITB-BAC from chromosome 11 of Mus musculus (mouse) Length = 120637 Score = 40.1 bits (20), Expect = 7.5 Identities = 23/24 (95%) Strand = Plus / Minus Query: 284 ccctactccttctactctctccca 307 ||||||||||||| |||||||||| Sbjct: 84828 ccctactccttcttctctctccca 84805 Database: nt Posted date: May 29, 2006 11:10 AM Number of letters in database: 3,984,495,279 Number of sequences in database: 917,343 Database: /shigen/export/home/twatanab/db/nt/nt.01 Posted date: May 29, 2006 11:16 AM Number of letters in database: 3,988,174,986 Number of sequences in database: 835,257 Database: /shigen/export/home/twatanab/db/nt/nt.02 Posted date: May 29, 2006 11:21 AM Number of letters in database: 3,991,246,324 Number of sequences in database: 771,481 Database: /shigen/export/home/twatanab/db/nt/nt.03 Posted date: May 29, 2006 11:27 AM Number of letters in database: 3,990,718,311 Number of sequences in database: 977,174 Database: /shigen/export/home/twatanab/db/nt/nt.04 Posted date: May 29, 2006 11:29 AM Number of letters in database: 1,278,410,368 Number of sequences in database: 400,813 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 4,862,181 Number of Sequences: 3902068 Number of extensions: 4862181 Number of successful extensions: 125219 Number of sequences better than 10.0: 70 Number of HSP's better than 10.0 without gapping: 72 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 124774 Number of HSP's gapped (non-prelim): 442 length of query: 551 length of database: 17,233,045,268 effective HSP length: 23 effective length of query: 528 effective length of database: 17,143,297,704 effective search space: 9051661187712 effective search space used: 9051661187712 T: 0 A: 0 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 20 (40.1 bits)