| Clone Name | bags8e23 |
|---|---|
| Clone Library Name | barley_pub |
>gb|AC104707.2| Oryza sativa (japonica cultivar-group) chromosome 5 clone OJ1118_F06, complete sequence Length = 136143 Score = 260 bits (131), Expect = 2e-66 Identities = 207/233 (88%) Strand = Plus / Plus Query: 23 ctaaggcgccaagcaaccaacattgtctcaacaaggctgagccgtgcanaaccaccactg 82 |||||||||||||| ||||||||||| ||||||||||||||||||||| ||||||||||| Sbjct: 47650 ctaaggcgccaagccaccaacattgtatcaacaaggctgagccgtgcagaaccaccactg 47709 Query: 83 cgaaaagaaattgtggagtacatgctggatgtggattctcacatgtggagcatgagaaag 142 || || |||||||||||||||||||||||||| || ||||| |||||||||||| | ||| Sbjct: 47710 cggaaggaaattgtggagtacatgctggatgttgactctcatatgtggagcatgcggaag 47769 Query: 143 agcaaggcaaacttcttccgtatcatgggtgtcttgagccctctgattgcagntgctaga 202 |||||||||||||| |||||||||||||||||| | |||||||||||||| | || | Sbjct: 47770 agcaaggcaaactttttccgtatcatgggtgtcctaagccctctgattgcggtggccaag 47829 Query: 203 tggtttgatcagatctgtcactggaggaacccactgacgactatactgatcca 255 ||||||||||||||||| || ||||| || || ||||| || ||||||||||| Sbjct: 47830 tggtttgatcagatctgccattggagaaatccgctgaccaccatactgatcca 47882
>dbj|AP008211.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 5, complete sequence Length = 29737217 Score = 260 bits (131), Expect = 2e-66 Identities = 207/233 (88%) Strand = Plus / Plus Query: 23 ctaaggcgccaagcaaccaacattgtctcaacaaggctgagccgtgcanaaccaccactg 82 |||||||||||||| ||||||||||| ||||||||||||||||||||| ||||||||||| Sbjct: 17670892 ctaaggcgccaagccaccaacattgtatcaacaaggctgagccgtgcagaaccaccactg 17670951 Query: 83 cgaaaagaaattgtggagtacatgctggatgtggattctcacatgtggagcatgagaaag 142 || || |||||||||||||||||||||||||| || ||||| |||||||||||| | ||| Sbjct: 17670952 cggaaggaaattgtggagtacatgctggatgttgactctcatatgtggagcatgcggaag 17671011 Query: 143 agcaaggcaaacttcttccgtatcatgggtgtcttgagccctctgattgcagntgctaga 202 |||||||||||||| |||||||||||||||||| | |||||||||||||| | || | Sbjct: 17671012 agcaaggcaaactttttccgtatcatgggtgtcctaagccctctgattgcggtggccaag 17671071 Query: 203 tggtttgatcagatctgtcactggaggaacccactgacgactatactgatcca 255 ||||||||||||||||| || ||||| || || ||||| || ||||||||||| Sbjct: 17671072 tggtttgatcagatctgccattggagaaatccgctgaccaccatactgatcca 17671124 Score = 40.1 bits (20), Expect = 3.3 Identities = 23/24 (95%) Strand = Plus / Minus Query: 93 ttgtggagtacatgctggatgtgg 116 |||||||||||||||| ||||||| Sbjct: 20937940 ttgtggagtacatgctcgatgtgg 20937917
>dbj|AK102476.1| Oryza sativa (japonica cultivar-group) cDNA clone:J033094I04, full insert sequence Length = 3254 Score = 260 bits (131), Expect = 2e-66 Identities = 207/233 (88%) Strand = Plus / Plus Query: 23 ctaaggcgccaagcaaccaacattgtctcaacaaggctgagccgtgcanaaccaccactg 82 |||||||||||||| ||||||||||| ||||||||||||||||||||| ||||||||||| Sbjct: 2007 ctaaggcgccaagccaccaacattgtatcaacaaggctgagccgtgcagaaccaccactg 2066 Query: 83 cgaaaagaaattgtggagtacatgctggatgtggattctcacatgtggagcatgagaaag 142 || || |||||||||||||||||||||||||| || ||||| |||||||||||| | ||| Sbjct: 2067 cggaaggaaattgtggagtacatgctggatgttgactctcatatgtggagcatgcggaag 2126 Query: 143 agcaaggcaaacttcttccgtatcatgggtgtcttgagccctctgattgcagntgctaga 202 |||||||||||||| |||||||||||||||||| | |||||||||||||| | || | Sbjct: 2127 agcaaggcaaactttttccgtatcatgggtgtcctaagccctctgattgcggtggccaag 2186 Query: 203 tggtttgatcagatctgtcactggaggaacccactgacgactatactgatcca 255 ||||||||||||||||| || ||||| || || ||||| || ||||||||||| Sbjct: 2187 tggtttgatcagatctgccattggagaaatccgctgaccaccatactgatcca 2239
>dbj|AK058522.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-016-H09, full insert sequence Length = 1888 Score = 260 bits (131), Expect = 2e-66 Identities = 207/233 (88%) Strand = Plus / Plus Query: 23 ctaaggcgccaagcaaccaacattgtctcaacaaggctgagccgtgcanaaccaccactg 82 |||||||||||||| ||||||||||| ||||||||||||||||||||| ||||||||||| Sbjct: 736 ctaaggcgccaagccaccaacattgtatcaacaaggctgagccgtgcagaaccaccactg 795 Query: 83 cgaaaagaaattgtggagtacatgctggatgtggattctcacatgtggagcatgagaaag 142 || || |||||||||||||||||||||||||| || ||||| |||||||||||| | ||| Sbjct: 796 cggaaggaaattgtggagtacatgctggatgttgactctcatatgtggagcatgcggaag 855 Query: 143 agcaaggcaaacttcttccgtatcatgggtgtcttgagccctctgattgcagntgctaga 202 |||||||||||||| |||||||||||||||||| | |||||||||||||| | || | Sbjct: 856 agcaaggcaaactttttccgtatcatgggtgtcctaagccctctgattgcggtggccaag 915 Query: 203 tggtttgatcagatctgtcactggaggaacccactgacgactatactgatcca 255 ||||||||||||||||| || ||||| || || ||||| || ||||||||||| Sbjct: 916 tggtttgatcagatctgccattggagaaatccgctgaccaccatactgatcca 968
>ref|NM_121300.2| Arabidopsis thaliana unknown protein AT5G12970 mRNA, complete cds Length = 2557 Score = 81.8 bits (41), Expect = 1e-12 Identities = 156/195 (80%) Strand = Plus / Plus Query: 41 aacattgtctcaacaaggctgagccgtgcanaaccaccactgcgaaaagaaattgtggag 100 ||||||||||| ||||||||| ||| ||| | || || || || ||||| ||||||||| Sbjct: 1806 aacattgtctcggcaaggctgaaccgcgcagagccgcctcttcgcaaagagattgtggag 1865 Query: 101 tacatgctggatgtggattctcacatgtggagcatgagaaagagcaaggcaaacttcttc 160 |||||||| ||||| || || || |||||||||||||| | ||| || || ||||||||| Sbjct: 1866 tacatgctcgatgttgactcccatatgtggagcatgaggaggagtaaagctaacttcttc 1925 Query: 161 cgtatcatgggtgtcttgagccctctgattgcagntgctagatggtttgatcagatctgt 220 | |||||| ||| |||| ||| ||||| | || | |||||||||||||||||| Sbjct: 1926 agaatcatgaatgttctgagtggtctcattgctgttggaaaatggtttgatcagatctgc 1985 Query: 221 cactggaggaaccca 235 ||||||| |||||| Sbjct: 1986 aactggagaaaccca 2000
>emb|AL353013.1|ATT24H18 Arabidopsis thaliana DNA chromosome 5, BAC clone T24H18 (ESSA project) Length = 90020 Score = 81.8 bits (41), Expect = 1e-12 Identities = 156/195 (80%) Strand = Plus / Plus Query: 41 aacattgtctcaacaaggctgagccgtgcanaaccaccactgcgaaaagaaattgtggag 100 ||||||||||| ||||||||| ||| ||| | || || || || ||||| ||||||||| Sbjct: 56393 aacattgtctcggcaaggctgaaccgcgcagagccgcctcttcgcaaagagattgtggag 56452 Query: 101 tacatgctggatgtggattctcacatgtggagcatgagaaagagcaaggcaaacttcttc 160 |||||||| ||||| || || || |||||||||||||| | ||| || || ||||||||| Sbjct: 56453 tacatgctcgatgttgactcccatatgtggagcatgaggaggagtaaagctaacttcttc 56512 Query: 161 cgtatcatgggtgtcttgagccctctgattgcagntgctagatggtttgatcagatctgt 220 | |||||| ||| |||| ||| ||||| | || | |||||||||||||||||| Sbjct: 56513 agaatcatgaatgttctgagtggtctcattgctgttggaaaatggtttgatcagatctgc 56572 Query: 221 cactggaggaaccca 235 ||||||| |||||| Sbjct: 56573 aactggagaaaccca 56587
>ref|NM_120768.1| Arabidopsis thaliana unknown protein AT5G06850 mRNA, complete cds Length = 2350 Score = 77.8 bits (39), Expect = 2e-11 Identities = 57/63 (90%) Strand = Plus / Plus Query: 98 gagtacatgctggatgtggattctcacatgtggagcatgagaaagagcaaggcaaacttc 157 ||||||||||| ||||| ||||| ||||||||||||||||||| |||||| || |||||| Sbjct: 1457 gagtacatgcttgatgttgattcacacatgtggagcatgagaaggagcaaagctaacttc 1516 Query: 158 ttc 160 ||| Sbjct: 1517 ttc 1519
>gb|AY133622.1| Arabidopsis thaliana AT5g06850/MOJ9_2 mRNA, complete cds Length = 2010 Score = 77.8 bits (39), Expect = 2e-11 Identities = 57/63 (90%) Strand = Plus / Plus Query: 98 gagtacatgctggatgtggattctcacatgtggagcatgagaaagagcaaggcaaacttc 157 ||||||||||| ||||| ||||| ||||||||||||||||||| |||||| || |||||| Sbjct: 1342 gagtacatgcttgatgttgattcacacatgtggagcatgagaaggagcaaagctaacttc 1401 Query: 158 ttc 160 ||| Sbjct: 1402 ttc 1404
>gb|AY057690.1| Arabidopsis thaliana AT5g06850/MOJ9_2 mRNA, complete cds Length = 2350 Score = 77.8 bits (39), Expect = 2e-11 Identities = 57/63 (90%) Strand = Plus / Plus Query: 98 gagtacatgctggatgtggattctcacatgtggagcatgagaaagagcaaggcaaacttc 157 ||||||||||| ||||| ||||| ||||||||||||||||||| |||||| || |||||| Sbjct: 1457 gagtacatgcttgatgttgattcacacatgtggagcatgagaaggagcaaagctaacttc 1516 Query: 158 ttc 160 ||| Sbjct: 1517 ttc 1519
>dbj|AB010697.1| Arabidopsis thaliana genomic DNA, chromosome 5, P1 clone:MOJ9 Length = 86380 Score = 77.8 bits (39), Expect = 2e-11 Identities = 57/63 (90%) Strand = Plus / Minus Query: 98 gagtacatgctggatgtggattctcacatgtggagcatgagaaagagcaaggcaaacttc 157 ||||||||||| ||||| ||||| ||||||||||||||||||| |||||| || |||||| Sbjct: 6844 gagtacatgcttgatgttgattcacacatgtggagcatgagaaggagcaaagctaacttc 6785 Query: 158 ttc 160 ||| Sbjct: 6784 ttc 6782
>emb|BX830559.1|CNS09YQ0 Arabidopsis thaliana Full-length cDNA Complete sequence from clone GSLTFB90ZB04 of Flowers and buds of strain col-0 of Arabidopsis thaliana (thale cress) Length = 2560 Score = 65.9 bits (33), Expect = 6e-08 Identities = 154/195 (78%) Strand = Plus / Plus Query: 41 aacattgtctcaacaaggctgagccgtgcanaaccaccactgcgaaaagaaattgtggag 100 ||||||||||| ||||||||| ||| | | | || || || || ||||| ||||||||| Sbjct: 1809 aacattgtctcggcaaggctgaaccgcggagagccgcctcttcgcaaagagattgtggag 1868 Query: 101 tacatgctggatgtggattctcacatgtggagcatgagaaagagcaaggcaaacttcttc 160 |||||||| ||||| | || || |||||||||||||| | ||| || || ||||||||| Sbjct: 1869 tacatgctcgatgttcactcccatatgtggagcatgaggaggagtaaagctaacttcttc 1928 Query: 161 cgtatcatgggtgtcttgagccctctgattgcagntgctagatggtttgatcagatctgt 220 | |||||| ||| |||| ||| ||||| | || | |||||||||||||||||| Sbjct: 1929 agaatcatgaatgttctgagtggtctcattgctgttggaaaatggtttgatcagatctgc 1988 Query: 221 cactggaggaaccca 235 ||||||| |||||| Sbjct: 1989 aactggagaaaccca 2003
>dbj|AP008212.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 6, complete sequence Length = 30731886 Score = 63.9 bits (32), Expect = 2e-07 Identities = 59/68 (86%) Strand = Plus / Minus Query: 95 gtggagtacatgctggatgtggattctcacatgtggagcatgagaaagagcaaggcaaac 154 |||||||||||||| || ||||| || ||||||||||||||| | ||||||||| ||| Sbjct: 24172518 gtggagtacatgctcgacgtggagtcccacatgtggagcatgcggcggagcaaggccaac 24172459 Query: 155 ttcttccg 162 |||||||| Sbjct: 24172458 ttcttccg 24172451
>dbj|AP004781.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 6, PAC clone:P0691E09 Length = 149859 Score = 63.9 bits (32), Expect = 2e-07 Identities = 59/68 (86%) Strand = Plus / Minus Query: 95 gtggagtacatgctggatgtggattctcacatgtggagcatgagaaagagcaaggcaaac 154 |||||||||||||| || ||||| || ||||||||||||||| | ||||||||| ||| Sbjct: 2607 gtggagtacatgctcgacgtggagtcccacatgtggagcatgcggcggagcaaggccaac 2548 Query: 155 ttcttccg 162 |||||||| Sbjct: 2547 ttcttccg 2540
>dbj|AP003711.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 6, PAC clone:P0417G12 Length = 163568 Score = 63.9 bits (32), Expect = 2e-07 Identities = 59/68 (86%) Strand = Plus / Minus Query: 95 gtggagtacatgctggatgtggattctcacatgtggagcatgagaaagagcaaggcaaac 154 |||||||||||||| || ||||| || ||||||||||||||| | ||||||||| ||| Sbjct: 105976 gtggagtacatgctcgacgtggagtcccacatgtggagcatgcggcggagcaaggccaac 105917 Query: 155 ttcttccg 162 |||||||| Sbjct: 105916 ttcttccg 105909
>ref|NM_124180.2| Arabidopsis thaliana unknown protein AT5G48060 mRNA, complete cds Length = 3235 Score = 61.9 bits (31), Expect = 9e-07 Identities = 40/43 (93%) Strand = Plus / Plus Query: 98 gagtacatgctggatgtggattctcacatgtggagcatgagaa 140 ||||||||||||||||| ||||||||| | ||||||||||||| Sbjct: 2443 gagtacatgctggatgtagattctcacttatggagcatgagaa 2485
>gb|AC161033.18| Medicago truncatula clone mth2-57g13, complete sequence Length = 109039 Score = 61.9 bits (31), Expect = 9e-07 Identities = 61/71 (85%) Strand = Plus / Plus Query: 89 gaaattgtggagtacatgctggatgtggattctcacatgtggagcatgagaaagagcaag 148 |||||||| ||||||||||||||||| ||||| | || ||||||||||||| ||||| Sbjct: 36863 gaaattgttgagtacatgctggatgttgattccaatatatggagcatgagaagaagcaaa 36922 Query: 149 gcaaacttctt 159 || |||||||| Sbjct: 36923 gctaacttctt 36933
>gb|AC150876.29| Medicago truncatula clone mth2-28e19, complete sequence Length = 91361 Score = 61.9 bits (31), Expect = 9e-07 Identities = 61/71 (85%) Strand = Plus / Minus Query: 89 gaaattgtggagtacatgctggatgtggattctcacatgtggagcatgagaaagagcaag 148 |||||||| ||||||||||||||||| ||||| | || ||||||||||||| ||||| Sbjct: 83551 gaaattgttgagtacatgctggatgttgattccaatatatggagcatgagaagaagcaaa 83492 Query: 149 gcaaacttctt 159 || |||||||| Sbjct: 83491 gctaacttctt 83481
>dbj|AB017064.1| Arabidopsis thaliana genomic DNA, chromosome 5, P1 clone:MDN11 Length = 83373 Score = 61.9 bits (31), Expect = 9e-07 Identities = 40/43 (93%) Strand = Plus / Plus Query: 98 gagtacatgctggatgtggattctcacatgtggagcatgagaa 140 ||||||||||||||||| ||||||||| | ||||||||||||| Sbjct: 53198 gagtacatgctggatgtagattctcacttatggagcatgagaa 53240 Score = 40.1 bits (20), Expect = 3.3 Identities = 20/20 (100%) Strand = Plus / Plus Query: 44 attgtctcaacaaggctgag 63 |||||||||||||||||||| Sbjct: 4123 attgtctcaacaaggctgag 4142
>ref|XM_474407.1| Oryza sativa (japonica cultivar-group), predicted mRNA Length = 3036 Score = 58.0 bits (29), Expect = 1e-05 Identities = 74/89 (83%) Strand = Plus / Plus Query: 72 aaccaccactgcgaaaagaaattgtggagtacatgctggatgtggattctcacatgtgga 131 ||||||| ||| |||| ||| |||| ||||||||| ||||| ||||||||| |||||| Sbjct: 2342 aaccacctctgagaaaggaagttgttgagtacatgtcagatgttgattctcacttgtgga 2401 Query: 132 gcatgagaaagagcaaggcaaacttcttc 160 |||||||| ||||| || ||||||||| Sbjct: 2402 gcatgagacgaagcaaagccaacttcttc 2430
>dbj|AP008210.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 4, complete sequence Length = 35498469 Score = 58.0 bits (29), Expect = 1e-05 Identities = 74/89 (83%) Strand = Plus / Plus Query: 72 aaccaccactgcgaaaagaaattgtggagtacatgctggatgtggattctcacatgtgga 131 ||||||| ||| |||| ||| |||| ||||||||| ||||| ||||||||| |||||| Sbjct: 34954182 aaccacctctgagaaaggaagttgttgagtacatgtcagatgttgattctcacttgtgga 34954241 Query: 132 gcatgagaaagagcaaggcaaacttcttc 160 |||||||| ||||| || ||||||||| Sbjct: 34954242 gcatgagacgaagcaaagccaacttcttc 34954270 Score = 44.1 bits (22), Expect = 0.21 Identities = 31/34 (91%) Strand = Plus / Plus Query: 95 gtggagtacatgctggatgtggattctcacatgt 128 ||||||||||||||||| ||||| || ||||||| Sbjct: 35436363 gtggagtacatgctggacgtggactcccacatgt 35436396
>dbj|AK102910.1| Oryza sativa (japonica cultivar-group) cDNA clone:J033113J04, full insert sequence Length = 3717 Score = 58.0 bits (29), Expect = 1e-05 Identities = 74/89 (83%) Strand = Plus / Plus Query: 72 aaccaccactgcgaaaagaaattgtggagtacatgctggatgtggattctcacatgtgga 131 ||||||| ||| |||| ||| |||| ||||||||| ||||| ||||||||| |||||| Sbjct: 2772 aaccacctctgagaaaggaagttgttgagtacatgtcagatgttgattctcacttgtgga 2831 Query: 132 gcatgagaaagagcaaggcaaacttcttc 160 |||||||| ||||| || ||||||||| Sbjct: 2832 gcatgagacgaagcaaagccaacttcttc 2860
>dbj|AK073897.1| Oryza sativa (japonica cultivar-group) cDNA clone:J033075A06, full insert sequence Length = 3730 Score = 58.0 bits (29), Expect = 1e-05 Identities = 74/89 (83%) Strand = Plus / Plus Query: 72 aaccaccactgcgaaaagaaattgtggagtacatgctggatgtggattctcacatgtgga 131 ||||||| ||| |||| ||| |||| ||||||||| ||||| ||||||||| |||||| Sbjct: 2794 aaccacctctgagaaaggaagttgttgagtacatgtcagatgttgattctcacttgtgga 2853 Query: 132 gcatgagaaagagcaaggcaaacttcttc 160 |||||||| ||||| || ||||||||| Sbjct: 2854 gcatgagacgaagcaaagccaacttcttc 2882
>emb|AL732345.3| Oryza sativa genomic DNA, chromosome 4, BAC clone: H0306F12, complete sequence Length = 84361 Score = 58.0 bits (29), Expect = 1e-05 Identities = 74/89 (83%) Strand = Plus / Plus Query: 72 aaccaccactgcgaaaagaaattgtggagtacatgctggatgtggattctcacatgtgga 131 ||||||| ||| |||| ||| |||| ||||||||| ||||| ||||||||| |||||| Sbjct: 59564 aaccacctctgagaaaggaagttgttgagtacatgtcagatgttgattctcacttgtgga 59623 Query: 132 gcatgagaaagagcaaggcaaacttcttc 160 |||||||| ||||| || ||||||||| Sbjct: 59624 gcatgagacgaagcaaagccaacttcttc 59652
>emb|AL606651.3|OSJN00092 Oryza sativa genomic DNA, chromosome 4, BAC clone: OSJNBa0088H09, complete sequence Length = 145391 Score = 58.0 bits (29), Expect = 1e-05 Identities = 74/89 (83%) Strand = Plus / Plus Query: 72 aaccaccactgcgaaaagaaattgtggagtacatgctggatgtggattctcacatgtgga 131 ||||||| ||| |||| ||| |||| ||||||||| ||||| ||||||||| |||||| Sbjct: 13234 aaccacctctgagaaaggaagttgttgagtacatgtcagatgttgattctcacttgtgga 13293 Query: 132 gcatgagaaagagcaaggcaaacttcttc 160 |||||||| ||||| || ||||||||| Sbjct: 13294 gcatgagacgaagcaaagccaacttcttc 13322
>dbj|AK073403.1| Oryza sativa (japonica cultivar-group) cDNA clone:J033042F02, full insert sequence Length = 2138 Score = 56.0 bits (28), Expect = 6e-05 Identities = 55/64 (85%) Strand = Plus / Plus Query: 99 agtacatgctggatgtggattctcacatgtggagcatgagaaagagcaaggcaaacttct 158 |||||||||| || ||||| || ||||||||||||||| | ||||||||| ||||||| Sbjct: 1289 agtacatgctcgacgtggagtcccacatgtggagcatgcggcggagcaaggccaacttct 1348 Query: 159 tccg 162 |||| Sbjct: 1349 tccg 1352
>ref|NM_104035.2| Arabidopsis thaliana unknown protein AT1G51570 mRNA, complete cds Length = 2513 Score = 54.0 bits (27), Expect = 2e-04 Identities = 78/95 (82%) Strand = Plus / Plus Query: 86 aaagaaattgtggagtacatgctggatgtggattctcacatgtggagcatgagaaagagc 145 |||||| |||| ||||| ||||| ||||||| |||||||||||||| ||| | | ||| Sbjct: 1651 aaagaagttgttgagtatatgcttgatgtgggatctcacatgtggagtatgcgtagaagc 1710 Query: 146 aaggcaaacttcttccgtatcatgggtgtcttgag 180 ||||| || |||||| | || ||||| |||||||| Sbjct: 1711 aaggcgaatttcttcaggataatgggagtcttgag 1745
>gb|AY054155.1| Arabidopsis thaliana At1g51570/F19C24.20 mRNA, complete cds Length = 873 Score = 54.0 bits (27), Expect = 2e-04 Identities = 78/95 (82%) Strand = Plus / Plus Query: 86 aaagaaattgtggagtacatgctggatgtggattctcacatgtggagcatgagaaagagc 145 |||||| |||| ||||| ||||| ||||||| |||||||||||||| ||| | | ||| Sbjct: 193 aaagaagttgttgagtatatgcttgatgtgggatctcacatgtggagtatgcgtagaagc 252 Query: 146 aaggcaaacttcttccgtatcatgggtgtcttgag 180 ||||| || |||||| | || ||||| |||||||| Sbjct: 253 aaggcgaatttcttcaggataatgggagtcttgag 287
>gb|AY045695.1| Arabidopsis thaliana F19C24.20/F19C24.20 mRNA, complete cds Length = 1126 Score = 54.0 bits (27), Expect = 2e-04 Identities = 78/95 (82%) Strand = Plus / Plus Query: 86 aaagaaattgtggagtacatgctggatgtggattctcacatgtggagcatgagaaagagc 145 |||||| |||| ||||| ||||| ||||||| |||||||||||||| ||| | | ||| Sbjct: 258 aaagaagttgttgagtatatgcttgatgtgggatctcacatgtggagtatgcgtagaagc 317 Query: 146 aaggcaaacttcttccgtatcatgggtgtcttgag 180 ||||| || |||||| | || ||||| |||||||| Sbjct: 318 aaggcgaatttcttcaggataatgggagtcttgag 352
>gb|AC025294.14|AC025294 Arabidopsis thaliana chromosome 1 BAC F19C24 genomic sequence, complete sequence Length = 124511 Score = 54.0 bits (27), Expect = 2e-04 Identities = 78/95 (82%) Strand = Plus / Plus Query: 86 aaagaaattgtggagtacatgctggatgtggattctcacatgtggagcatgagaaagagc 145 |||||| |||| ||||| ||||| ||||||| |||||||||||||| ||| | | ||| Sbjct: 122689 aaagaagttgttgagtatatgcttgatgtgggatctcacatgtggagtatgcgtagaagc 122748 Query: 146 aaggcaaacttcttccgtatcatgggtgtcttgag 180 ||||| || |||||| | || ||||| |||||||| Sbjct: 122749 aaggcgaatttcttcaggataatgggagtcttgag 122783
>gb|AC024261.6|AC024261 Arabidopsis thaliana chromosome 1 BAC F5D21 genomic sequence, complete sequence Length = 92652 Score = 54.0 bits (27), Expect = 2e-04 Identities = 78/95 (82%) Strand = Plus / Plus Query: 86 aaagaaattgtggagtacatgctggatgtggattctcacatgtggagcatgagaaagagc 145 |||||| |||| ||||| ||||| ||||||| |||||||||||||| ||| | | ||| Sbjct: 17709 aaagaagttgttgagtatatgcttgatgtgggatctcacatgtggagtatgcgtagaagc 17768 Query: 146 aaggcaaacttcttccgtatcatgggtgtcttgag 180 ||||| || |||||| | || ||||| |||||||| Sbjct: 17769 aaggcgaatttcttcaggataatgggagtcttgag 17803
>ref|NM_115650.2| Arabidopsis thaliana unknown protein AT3G57880 mRNA, complete cds Length = 2713 Score = 52.0 bits (26), Expect = 9e-04 Identities = 64/77 (83%) Strand = Plus / Plus Query: 56 aggctgagccgtgcanaaccaccactgcgaaaagaaattgtggagtacatgctggatgtg 115 ||||||| ||| ||| ||||||| || | |||||| | || ||||| ||||| |||||| Sbjct: 1821 aggctgacccgagcagaaccacctctaaggaaagaagtagttgagtatatgcttgatgtg 1880 Query: 116 gattctcacatgtggag 132 | ||||||||||||||| Sbjct: 1881 ggttctcacatgtggag 1897
>gb|AC146704.8| Medicago truncatula clone mth2-107f11, complete sequence Length = 116591 Score = 52.0 bits (26), Expect = 9e-04 Identities = 53/62 (85%) Strand = Plus / Minus Query: 98 gagtacatgctggatgtggattctcacatgtggagcatgagaaagagcaaggcaaacttc 157 ||||||||| | ||||| ||||| || |||||||||||||||| ||||| || |||||| Sbjct: 77344 gagtacatgttagatgttgattcacatatgtggagcatgagaagaagcaaagccaacttc 77285 Query: 158 tt 159 || Sbjct: 77284 tt 77283
>emb|AL132977.1|ATT10K17 Arabidopsis thaliana DNA chromosome 3, BAC clone T10K17 Length = 109016 Score = 52.0 bits (26), Expect = 9e-04 Identities = 64/77 (83%) Strand = Plus / Minus Query: 56 aggctgagccgtgcanaaccaccactgcgaaaagaaattgtggagtacatgctggatgtg 115 ||||||| ||| ||| ||||||| || | |||||| | || ||||| ||||| |||||| Sbjct: 26987 aggctgacccgagcagaaccacctctaaggaaagaagtagttgagtatatgcttgatgtg 26928 Query: 116 gattctcacatgtggag 132 | ||||||||||||||| Sbjct: 26927 ggttctcacatgtggag 26911
>gb|AY107337.1| Zea mays PCO064147 mRNA sequence Length = 1264 Score = 50.1 bits (25), Expect = 0.003 Identities = 40/45 (88%) Strand = Plus / Plus Query: 116 gattctcacatgtggagcatgagaaagagcaaggcaaacttcttc 160 ||||||||| ||||||||||||| || ||||| || ||||||||| Sbjct: 387 gattctcacttgtggagcatgaggaaaagcaaagccaacttcttc 431
>gb|AY120689.1| Arabidopsis thaliana AT3g57880/T10K17_90 mRNA, complete cds Length = 2322 Score = 46.1 bits (23), Expect = 0.053 Identities = 32/35 (91%) Strand = Plus / Plus Query: 98 gagtacatgctggatgtggattctcacatgtggag 132 ||||| ||||| ||||||| ||||||||||||||| Sbjct: 1654 gagtatatgcttgatgtgggttctcacatgtggag 1688
>gb|AF375436.1| Arabidopsis thaliana AT3g57880/T10K17_90 mRNA, complete cds Length = 2714 Score = 46.1 bits (23), Expect = 0.053 Identities = 32/35 (91%) Strand = Plus / Plus Query: 98 gagtacatgctggatgtggattctcacatgtggag 132 ||||| ||||| ||||||| ||||||||||||||| Sbjct: 1863 gagtatatgcttgatgtgggttctcacatgtggag 1897
>dbj|AB116023.1| Flaveria trinervia mRNA for hypothetical protein, partial cds Length = 1398 Score = 46.1 bits (23), Expect = 0.053 Identities = 41/47 (87%) Strand = Plus / Plus Query: 93 ttgtggagtacatgctggatgtggattctcacatgtggagcatgaga 139 |||| ||||| ||||||||||||| || | ||||||||| ||||||| Sbjct: 639 ttgtagagtatatgctggatgtgggttgtgacatgtggaccatgaga 685
>dbj|AP006364.1| Lotus japonicus genomic DNA, chromosome 4, clone:LjT28B04, TM0170, complete sequence Length = 101172 Score = 46.1 bits (23), Expect = 0.053 Identities = 44/51 (86%) Strand = Plus / Minus Query: 100 gtacatgctggatgtggattctcacatgtggagcatgagaaagagcaaggc 150 |||||||||||||| |||||| ||| ||||| ||||| ||||||||||| Sbjct: 68748 gtacatgctggatgcggattcacacgcttggagtatgaggaagagcaaggc 68698
>ref|XM_474475.1| Oryza sativa (japonica cultivar-group), predicted mRNA Length = 3066 Score = 44.1 bits (22), Expect = 0.21 Identities = 31/34 (91%) Strand = Plus / Plus Query: 95 gtggagtacatgctggatgtggattctcacatgt 128 ||||||||||||||||| ||||| || ||||||| Sbjct: 2389 gtggagtacatgctggacgtggactcccacatgt 2422
>emb|AL606656.3|OSJN00099 Oryza sativa genomic DNA, chromosome 4, BAC clone: OSJNBb0020J19, complete sequence Length = 123272 Score = 44.1 bits (22), Expect = 0.21 Identities = 31/34 (91%) Strand = Plus / Plus Query: 95 gtggagtacatgctggatgtggattctcacatgt 128 ||||||||||||||||| ||||| || ||||||| Sbjct: 61166 gtggagtacatgctggacgtggactcccacatgt 61199
>emb|AL391597.15| Human DNA sequence from clone RP11-357P18 on chromosome 1 Contains the 3' end of the DAF gene for decay accelerating factor for complement (CD55, Cromer blood group system) and the 5' end of CR2 gene for complement component (3d/Epstein Barr virus) receptor 2, complete sequence Length = 141124 Score = 42.1 bits (21), Expect = 0.83 Identities = 28/29 (96%), Gaps = 1/29 (3%) Strand = Plus / Plus Query: 117 attctcacatg-tggagcatgagaaagag 144 ||||||||||| ||||||||||||||||| Sbjct: 65286 attctcacatgatggagcatgagaaagag 65314
>ref|NM_124172.2| Arabidopsis thaliana acyltransferase/ transferase AT5G47980 mRNA, complete cds Length = 1589 Score = 40.1 bits (20), Expect = 3.3 Identities = 20/20 (100%) Strand = Plus / Plus Query: 44 attgtctcaacaaggctgag 63 |||||||||||||||||||| Sbjct: 248 attgtctcaacaaggctgag 267
>gb|AC130600.3| Oryza sativa (japonica cultivar-group) chromosome 5 clone OSJNBb0048I21, complete sequence Length = 137650 Score = 40.1 bits (20), Expect = 3.3 Identities = 23/24 (95%) Strand = Plus / Minus Query: 93 ttgtggagtacatgctggatgtgg 116 |||||||||||||||| ||||||| Sbjct: 64718 ttgtggagtacatgctcgatgtgg 64695
>ref|XM_475267.1| Oryza sativa (japonica cultivar-group), predicted mRNA Length = 2415 Score = 40.1 bits (20), Expect = 3.3 Identities = 23/24 (95%) Strand = Plus / Plus Query: 93 ttgtggagtacatgctggatgtgg 116 |||||||||||||||| ||||||| Sbjct: 1742 ttgtggagtacatgctcgatgtgg 1765
>gb|AC113536.10| Mus musculus chromosome 17, clone RP23-77L13, complete sequence Length = 153863 Score = 40.1 bits (20), Expect = 3.3 Identities = 23/24 (95%) Strand = Plus / Minus Query: 138 gaaagagcaaggcaaacttcttcc 161 |||| ||||||||||||||||||| Sbjct: 153568 gaaaaagcaaggcaaacttcttcc 153545
>gb|BT019285.1| Zea mays clone Contig958.F mRNA sequence Length = 1156 Score = 40.1 bits (20), Expect = 3.3 Identities = 38/44 (86%) Strand = Plus / Minus Query: 119 tctcacatgtggagcatgagaaagagcaaggcaaacttcttccg 162 |||||| ||||||||||| || |||||| || ||||||||||| Sbjct: 941 tctcacctgtggagcatgcgacggagcaaagctaacttcttccg 898
>ref|XM_423862.1| PREDICTED: Gallus gallus similar to 54 kDa vacuolar H(+)-ATPase subunit (LOC426199), mRNA Length = 1734 Score = 40.1 bits (20), Expect = 3.3 Identities = 20/20 (100%) Strand = Plus / Plus Query: 162 gtatcatgggtgtcttgagc 181 |||||||||||||||||||| Sbjct: 1028 gtatcatgggtgtcttgagc 1047
>gb|AC124830.8| Mus musculus chromosome 17, clone RP24-165B21, complete sequence Length = 176889 Score = 40.1 bits (20), Expect = 3.3 Identities = 23/24 (95%) Strand = Plus / Minus Query: 138 gaaagagcaaggcaaacttcttcc 161 |||| ||||||||||||||||||| Sbjct: 20733 gaaaaagcaaggcaaacttcttcc 20710
>emb|BX842650.1| Bdellovibrio bacteriovorus complete genome, strain HD100; segment 5/11 Length = 349723 Score = 40.1 bits (20), Expect = 3.3 Identities = 23/24 (95%) Strand = Plus / Minus Query: 150 caaacttcttccgtatcatgggtg 173 ||||||||||||| |||||||||| Sbjct: 89252 caaacttcttccgcatcatgggtg 89229
>emb|AL806529.6| Mouse DNA sequence from clone RP23-234M1 on chromosome 11 Contains the 3' end of the Nxn gene for nucleoredoxin, complete sequence Length = 74841 Score = 40.1 bits (20), Expect = 3.3 Identities = 20/20 (100%) Strand = Plus / Plus Query: 132 gcatgagaaagagcaaggca 151 |||||||||||||||||||| Sbjct: 30482 gcatgagaaagagcaaggca 30501
>emb|AL954667.9| Zebrafish DNA sequence from clone CH211-214K3 in linkage group 25, complete sequence Length = 202657 Score = 40.1 bits (20), Expect = 3.3 Identities = 20/20 (100%) Strand = Plus / Plus Query: 81 tgcgaaaagaaattgtggag 100 |||||||||||||||||||| Sbjct: 39328 tgcgaaaagaaattgtggag 39347
>gb|BT005830.1| Arabidopsis thaliana At5g47980 gene, complete cds Length = 1332 Score = 40.1 bits (20), Expect = 3.3 Identities = 20/20 (100%) Strand = Plus / Plus Query: 44 attgtctcaacaaggctgag 63 |||||||||||||||||||| Sbjct: 166 attgtctcaacaaggctgag 185
>dbj|AK103559.1| Oryza sativa (japonica cultivar-group) cDNA clone:J033132J08, full insert sequence Length = 2918 Score = 40.1 bits (20), Expect = 3.3 Identities = 23/24 (95%) Strand = Plus / Plus Query: 93 ttgtggagtacatgctggatgtgg 116 |||||||||||||||| ||||||| Sbjct: 1874 ttgtggagtacatgctcgatgtgg 1897
>dbj|AK069203.1| Oryza sativa (japonica cultivar-group) cDNA clone:J023008D03, full insert sequence Length = 2437 Score = 40.1 bits (20), Expect = 3.3 Identities = 23/24 (95%) Strand = Plus / Plus Query: 93 ttgtggagtacatgctggatgtgg 116 |||||||||||||||| ||||||| Sbjct: 1337 ttgtggagtacatgctcgatgtgg 1360
>dbj|AK059651.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-031-C07, full insert sequence Length = 1820 Score = 40.1 bits (20), Expect = 3.3 Identities = 23/24 (95%) Strand = Plus / Plus Query: 93 ttgtggagtacatgctggatgtgg 116 |||||||||||||||| ||||||| Sbjct: 788 ttgtggagtacatgctcgatgtgg 811 Database: nt Posted date: May 29, 2006 11:10 AM Number of letters in database: 3,984,495,279 Number of sequences in database: 917,343 Database: /shigen/export/home/twatanab/db/nt/nt.01 Posted date: May 29, 2006 11:16 AM Number of letters in database: 3,988,174,986 Number of sequences in database: 835,257 Database: /shigen/export/home/twatanab/db/nt/nt.02 Posted date: May 29, 2006 11:21 AM Number of letters in database: 3,991,246,324 Number of sequences in database: 771,481 Database: /shigen/export/home/twatanab/db/nt/nt.03 Posted date: May 29, 2006 11:27 AM Number of letters in database: 3,990,718,311 Number of sequences in database: 977,174 Database: /shigen/export/home/twatanab/db/nt/nt.04 Posted date: May 29, 2006 11:29 AM Number of letters in database: 1,278,410,368 Number of sequences in database: 400,813 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 1,796,895 Number of Sequences: 3902068 Number of extensions: 1796895 Number of successful extensions: 30164 Number of sequences better than 10.0: 55 Number of HSP's better than 10.0 without gapping: 56 Number of HSP's successfully gapped in prelim test: 1 Number of HSP's that attempted gapping in prelim test: 30055 Number of HSP's gapped (non-prelim): 105 length of query: 255 length of database: 17,233,045,268 effective HSP length: 22 effective length of query: 233 effective length of database: 17,147,199,772 effective search space: 3995297546876 effective search space used: 3995297546876 T: 0 A: 0 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 20 (40.1 bits)