ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
menu 
| Clone Name | bags7p11 |
|---|---|
| Clone Library Name | barley_pub |
>RL19C_ARATH (P49693) 60S ribosomal protein L19-3| Length = 208 Score = 109 bits (272), Expect = 5e-24 Identities = 56/97 (57%), Positives = 61/97 (62%) Frame = +3 Query: 3 LPTKIXXXXXXXXXXXXXXKYREAKKIDKHMYHDMYLKVKGNMFKNKRVLMESIHKSKAE 182 LPTK+ KYRE KKID+HMYHDMY+KVKGN+FKNKRVLMESIHKSKAE Sbjct: 89 LPTKVLWMRRMRVLRRLLKKYRETKKIDRHMYHDMYMKVKGNVFKNKRVLMESIHKSKAE 148 Query: 183 KAREKTLSDQFXXXXXXXXXXXXXXXXXXXXXLAQGP 293 KAREKTLSDQF LA+GP Sbjct: 149 KAREKTLSDQFEAKRAKNKASRERKHARREERLAKGP 185
>RL19A_ARATH (Q9SRX2) 60S ribosomal protein L19-1| Length = 214 Score = 109 bits (272), Expect = 5e-24 Identities = 56/97 (57%), Positives = 61/97 (62%) Frame = +3 Query: 3 LPTKIXXXXXXXXXXXXXXKYREAKKIDKHMYHDMYLKVKGNMFKNKRVLMESIHKSKAE 182 LPTK+ KYRE KKIDKHMYHDMY++VKGN+FKNKRVLMESIHKSKAE Sbjct: 89 LPTKVLWMRRMRVLRRLLKKYRETKKIDKHMYHDMYMRVKGNVFKNKRVLMESIHKSKAE 148 Query: 183 KAREKTLSDQFXXXXXXXXXXXXXXXXXXXXXLAQGP 293 KAREKTLSDQF LA+GP Sbjct: 149 KAREKTLSDQFEAKRAKNKASRERKHARREERLAKGP 185
>RL19B_ARATH (Q9LUQ6) 60S ribosomal protein L19-2| Length = 209 Score = 108 bits (270), Expect = 9e-24 Identities = 56/97 (57%), Positives = 61/97 (62%) Frame = +3 Query: 3 LPTKIXXXXXXXXXXXXXXKYREAKKIDKHMYHDMYLKVKGNMFKNKRVLMESIHKSKAE 182 LPTKI KYRE+KKID+HMYHDMY+KVKGN+FKNKRVLMESIHK KAE Sbjct: 89 LPTKILWMRRMRVLRRFLSKYRESKKIDRHMYHDMYMKVKGNVFKNKRVLMESIHKMKAE 148 Query: 183 KAREKTLSDQFXXXXXXXXXXXXXXXXXXXXXLAQGP 293 KAREKTL+DQF LAQGP Sbjct: 149 KAREKTLADQFEAKRIKNKASRERKFARREERLAQGP 185
>RL19_RAT (P84100) 60S ribosomal protein L19| Length = 196 Score = 87.8 bits (216), Expect = 2e-17 Identities = 40/70 (57%), Positives = 51/70 (72%) Frame = +3 Query: 3 LPTKIXXXXXXXXXXXXXXKYREAKKIDKHMYHDMYLKVKGNMFKNKRVLMESIHKSKAE 182 +P K+ +YRE+KKID+HMYH +YLKVKGN+FKNKR+LME IHK KA+ Sbjct: 89 MPEKVTWMRRMRILRRLLRRYRESKKIDRHMYHSLYLKVKGNVFKNKRILMEHIHKLKAD 148 Query: 183 KAREKTLSDQ 212 KAR+K L+DQ Sbjct: 149 KARKKLLADQ 158
>RL19_PONPY (Q5RB99) 60S ribosomal protein L19| Length = 196 Score = 87.8 bits (216), Expect = 2e-17 Identities = 40/70 (57%), Positives = 51/70 (72%) Frame = +3 Query: 3 LPTKIXXXXXXXXXXXXXXKYREAKKIDKHMYHDMYLKVKGNMFKNKRVLMESIHKSKAE 182 +P K+ +YRE+KKID+HMYH +YLKVKGN+FKNKR+LME IHK KA+ Sbjct: 89 MPEKVTWMRRMRILRRLLRRYRESKKIDRHMYHSLYLKVKGNVFKNKRILMEHIHKLKAD 148 Query: 183 KAREKTLSDQ 212 KAR+K L+DQ Sbjct: 149 KARKKLLADQ 158
>RL19_MOUSE (P84099) 60S ribosomal protein L19| Length = 196 Score = 87.8 bits (216), Expect = 2e-17 Identities = 40/70 (57%), Positives = 51/70 (72%) Frame = +3 Query: 3 LPTKIXXXXXXXXXXXXXXKYREAKKIDKHMYHDMYLKVKGNMFKNKRVLMESIHKSKAE 182 +P K+ +YRE+KKID+HMYH +YLKVKGN+FKNKR+LME IHK KA+ Sbjct: 89 MPEKVTWMRRMRILRRLLRRYRESKKIDRHMYHSLYLKVKGNVFKNKRILMEHIHKLKAD 148 Query: 183 KAREKTLSDQ 212 KAR+K L+DQ Sbjct: 149 KARKKLLADQ 158
>RL19_MACFA (Q8HXN9) 60S ribosomal protein L19| Length = 196 Score = 87.8 bits (216), Expect = 2e-17 Identities = 40/70 (57%), Positives = 51/70 (72%) Frame = +3 Query: 3 LPTKIXXXXXXXXXXXXXXKYREAKKIDKHMYHDMYLKVKGNMFKNKRVLMESIHKSKAE 182 +P K+ +YRE+KKID+HMYH +YLKVKGN+FKNKR+LME IHK KA+ Sbjct: 89 MPEKVTWMRRMRILRRLLRRYRESKKIDRHMYHSLYLKVKGNVFKNKRILMEHIHKLKAD 148 Query: 183 KAREKTLSDQ 212 KAR+K L+DQ Sbjct: 149 KARKKLLADQ 158
>RL19_HUMAN (P84098) 60S ribosomal protein L19| Length = 196 Score = 87.8 bits (216), Expect = 2e-17 Identities = 40/70 (57%), Positives = 51/70 (72%) Frame = +3 Query: 3 LPTKIXXXXXXXXXXXXXXKYREAKKIDKHMYHDMYLKVKGNMFKNKRVLMESIHKSKAE 182 +P K+ +YRE+KKID+HMYH +YLKVKGN+FKNKR+LME IHK KA+ Sbjct: 89 MPEKVTWMRRMRILRRLLRRYRESKKIDRHMYHSLYLKVKGNVFKNKRILMEHIHKLKAD 148 Query: 183 KAREKTLSDQ 212 KAR+K L+DQ Sbjct: 149 KARKKLLADQ 158
>RL19_BOVIN (Q3T0W9) 60S ribosomal protein L19| Length = 196 Score = 87.8 bits (216), Expect = 2e-17 Identities = 40/70 (57%), Positives = 51/70 (72%) Frame = +3 Query: 3 LPTKIXXXXXXXXXXXXXXKYREAKKIDKHMYHDMYLKVKGNMFKNKRVLMESIHKSKAE 182 +P K+ +YRE+KKID+HMYH +YLKVKGN+FKNKR+LME IHK KA+ Sbjct: 89 MPEKVTWMRRMRILRRLLRRYRESKKIDRHMYHSLYLKVKGNVFKNKRILMEHIHKLKAD 148 Query: 183 KAREKTLSDQ 212 KAR+K L+DQ Sbjct: 149 KARKKLLADQ 158
>RL19_XENLA (Q7ZYS1) 60S ribosomal protein L19| Length = 197 Score = 87.4 bits (215), Expect = 2e-17 Identities = 40/70 (57%), Positives = 51/70 (72%) Frame = +3 Query: 3 LPTKIXXXXXXXXXXXXXXKYREAKKIDKHMYHDMYLKVKGNMFKNKRVLMESIHKSKAE 182 +P K+ +YRE+KKID+HMYH +YLKVKGN+FKNKR+LME IHK KA+ Sbjct: 89 MPEKLSWMRRMRILRRLLRRYRESKKIDRHMYHSLYLKVKGNVFKNKRILMEHIHKLKAD 148 Query: 183 KAREKTLSDQ 212 KAR+K L+DQ Sbjct: 149 KARKKLLADQ 158
>RL19_DROME (P36241) 60S ribosomal protein L19| Length = 203 Score = 87.4 bits (215), Expect = 2e-17 Identities = 40/70 (57%), Positives = 50/70 (71%) Frame = +3 Query: 3 LPTKIXXXXXXXXXXXXXXKYREAKKIDKHMYHDMYLKVKGNMFKNKRVLMESIHKSKAE 182 +PTK+ KYR++KKID+H+YHD+Y+K KGN+FKNKRVLME IHK KAE Sbjct: 89 MPTKLLWMQRQRVLRRLLKKYRDSKKIDRHLYHDLYMKCKGNVFKNKRVLMEYIHKKKAE 148 Query: 183 KAREKTLSDQ 212 K R K L+DQ Sbjct: 149 KQRSKMLADQ 158
>RL19_BRARE (Q6P5L3) 60S ribosomal protein L19| Length = 196 Score = 85.5 bits (210), Expect = 8e-17 Identities = 37/51 (72%), Positives = 46/51 (90%) Frame = +3 Query: 60 KYREAKKIDKHMYHDMYLKVKGNMFKNKRVLMESIHKSKAEKAREKTLSDQ 212 +YREAKKID+HMYH +YL+ KGN+FKNKR+LME IHK KA+KAR+K L+DQ Sbjct: 108 RYREAKKIDRHMYHSLYLRAKGNVFKNKRILMEHIHKLKADKARKKLLADQ 158
>RL19_ICTPU (Q90YU8) 60S ribosomal protein L19| Length = 196 Score = 84.3 bits (207), Expect = 2e-16 Identities = 36/51 (70%), Positives = 46/51 (90%) Frame = +3 Query: 60 KYREAKKIDKHMYHDMYLKVKGNMFKNKRVLMESIHKSKAEKAREKTLSDQ 212 +YRE+KKID+HMYH +YL+ KGN+FKNKR+LME IHK KA++AR+K LSDQ Sbjct: 108 RYRESKKIDRHMYHSLYLRAKGNVFKNKRILMEHIHKLKADRARKKLLSDQ 158
>RL19_DICDI (P14329) 60S ribosomal protein L19 (Vegetative-specific protein| V14) (22 kDa calmodulin-binding protein) Length = 186 Score = 79.7 bits (195), Expect = 4e-15 Identities = 40/70 (57%), Positives = 46/70 (65%) Frame = +3 Query: 3 LPTKIXXXXXXXXXXXXXXKYREAKKIDKHMYHDMYLKVKGNMFKNKRVLMESIHKSKAE 182 LP+KI KYREAKKIDKH Y ++YLK KGN+FKNKR L+E I KSK E Sbjct: 89 LPSKILWIRRIRVLRRLLKKYREAKKIDKHSYRELYLKAKGNVFKNKRTLIEYIVKSKTE 148 Query: 183 KAREKTLSDQ 212 K REK + DQ Sbjct: 149 KLREKLIQDQ 158
>RL19_CAEEL (O02639) 60S ribosomal protein L19| Length = 198 Score = 70.1 bits (170), Expect = 3e-12 Identities = 30/51 (58%), Positives = 40/51 (78%) Frame = +3 Query: 60 KYREAKKIDKHMYHDMYLKVKGNMFKNKRVLMESIHKSKAEKAREKTLSDQ 212 +YR+AKK+DKH+YH++YL+ KGN FKNK+ L+E I K K E R K L+DQ Sbjct: 108 RYRDAKKLDKHLYHELYLRAKGNNFKNKKNLIEYIFKKKTENKRAKQLADQ 158
>RL19_SCHPO (P05734) 60S ribosomal protein L19 (YL15)| Length = 192 Score = 66.6 bits (161), Expect = 4e-11 Identities = 29/51 (56%), Positives = 39/51 (76%) Frame = +3 Query: 60 KYREAKKIDKHMYHDMYLKVKGNMFKNKRVLMESIHKSKAEKAREKTLSDQ 212 KYRE+ KIDKH+YH +YL+ KGN FK+KR L+E I ++KAE R K + +Q Sbjct: 107 KYRESGKIDKHLYHTLYLEAKGNTFKHKRALIEHIQRAKAEANRTKLIQEQ 157
>RL19_YEAST (P05735) 60S ribosomal protein L19 (L23) (YL14) (RP33) (RP15L)| Length = 188 Score = 63.9 bits (154), Expect = 2e-10 Identities = 30/70 (42%), Positives = 45/70 (64%) Frame = +3 Query: 3 LPTKIXXXXXXXXXXXXXXKYREAKKIDKHMYHDMYLKVKGNMFKNKRVLMESIHKSKAE 182 LP+++ KYR+A KIDKH+YH +Y + KGN FK+KR L+E I ++KA+ Sbjct: 88 LPSQVVWIRRLRVLRRLLAKYRDAGKIDKHLYHVLYKESKGNAFKHKRALVEHIIQAKAD 147 Query: 183 KAREKTLSDQ 212 REK L+++ Sbjct: 148 AQREKALNEE 157
>RL19_PYRHO (O59437) 50S ribosomal protein L19e| Length = 150 Score = 36.2 bits (82), Expect = 0.055 Identities = 15/31 (48%), Positives = 20/31 (64%) Frame = +3 Query: 60 KYREAKKIDKHMYHDMYLKVKGNMFKNKRVL 152 K +E KKID+ Y +Y++ KG FKNK L Sbjct: 108 KLKEQKKIDRKTYRMLYIRAKGGQFKNKHQL 138
>RL19_PYRAB (Q9V1V3) 50S ribosomal protein L19e| Length = 151 Score = 35.4 bits (80), Expect = 0.093 Identities = 16/44 (36%), Positives = 24/44 (54%) Frame = +3 Query: 60 KYREAKKIDKHMYHDMYLKVKGNMFKNKRVLMESIHKSKAEKAR 191 K +E KKID+ Y +Y++ KG FK+K L + + K R Sbjct: 108 KLKEQKKIDRRTYRMLYIRAKGGQFKSKHQLYMFLEEHNLLKKR 151
>RL19_PYRFU (Q8U016) 50S ribosomal protein L19e (PfeL19)| Length = 150 Score = 33.9 bits (76), Expect = 0.27 Identities = 14/31 (45%), Positives = 19/31 (61%) Frame = +3 Query: 60 KYREAKKIDKHMYHDMYLKVKGNMFKNKRVL 152 K + KKID+ Y +Y++ KG FKNK L Sbjct: 108 KLKAQKKIDRKTYRMLYIRAKGGQFKNKHQL 138
>RL19_SULSO (Q9UX89) 50S ribosomal protein L19e| Length = 151 Score = 32.0 bits (71), Expect = 1.0 Identities = 12/24 (50%), Positives = 17/24 (70%) Frame = +3 Query: 66 REAKKIDKHMYHDMYLKVKGNMFK 137 R+ K ID+H Y ++YLK KG +K Sbjct: 111 RDHKVIDRHTYRELYLKTKGGNYK 134
>RL19_SULAC (O05639) 50S ribosomal protein L19e| Length = 150 Score = 32.0 bits (71), Expect = 1.0 Identities = 17/39 (43%), Positives = 21/39 (53%), Gaps = 4/39 (10%) Frame = +3 Query: 66 REAKKIDKHMYHDMYLKVKGNMFKN----KRVLMESIHK 170 R+ IDKH Y +Y + KGN FKN K L + HK Sbjct: 111 RDNNVIDKHTYRLLYKRAKGNYFKNLSDVKSYLRQMGHK 149
>NU1M_RAT (P03889) NADH-ubiquinone oxidoreductase chain 1 (EC 1.6.5.3) (NADH| dehydrogenase subunit 1) Length = 318 Score = 31.2 bits (69), Expect = 1.8 Identities = 18/50 (36%), Positives = 24/50 (48%), Gaps = 9/50 (18%) Frame = -3 Query: 193 SLAFSALDLWILS---------MRTLLFLNMLPLTFRYMSWYMCLSIFFA 71 +L S LWI + + LL+ N LPLT + WY+ L IF A Sbjct: 263 TLLLSTTFLWIRASYPRFRYDQLMHLLWKNFLPLTLAFCMWYISLPIFLA 312
>NU1M_HYLLA (Q96126) NADH-ubiquinone oxidoreductase chain 1 (EC 1.6.5.3) (NADH| dehydrogenase subunit 1) Length = 318 Score = 31.2 bits (69), Expect = 1.8 Identities = 18/51 (35%), Positives = 26/51 (50%), Gaps = 9/51 (17%) Frame = -3 Query: 193 SLAFSALDLWILS---------MRTLLFLNMLPLTFRYMSWYMCLSIFFAS 68 +L ++L LWI + + LL+ N LPLT + WY+ LS AS Sbjct: 263 TLLLTSLFLWIRTTYPRFRYDQLMYLLWKNFLPLTLTLLMWYISLSTMIAS 313
>POLS_RUBVT (P07566) Structural polyprotein [Contains: Nucleocapsid protein C;| Membrane glycoprotein E2; Membrane glycoprotein E1] Length = 1063 Score = 30.0 bits (66), Expect = 3.9 Identities = 14/22 (63%), Positives = 15/22 (68%) Frame = +1 Query: 229 PRARQAGRGRLPGGRRDWPRAP 294 PR R+ RGR G RRDW RAP Sbjct: 59 PRRRRGNRGR--GQRRDWSRAP 78
>RR3_MESVI (Q9MUU2) Chloroplast 30S ribosomal protein S3| Length = 213 Score = 29.6 bits (65), Expect = 5.1 Identities = 18/47 (38%), Positives = 26/47 (55%), Gaps = 11/47 (23%) Frame = +1 Query: 181 RRQERRPYLTSLRPSVPRARQAG--------RGRLPG---GRRDWPR 288 R QER+P+ ++R +V RA++AG GRL G R +W R Sbjct: 125 RLQERKPFRRAIRQAVQRAKRAGVQGIKIQVAGRLNGAEIARSEWVR 171
>NU1M_HALGR (P38598) NADH-ubiquinone oxidoreductase chain 1 (EC 1.6.5.3) (NADH| dehydrogenase subunit 1) Length = 318 Score = 28.9 bits (63), Expect = 8.7 Identities = 19/53 (35%), Positives = 26/53 (49%), Gaps = 9/53 (16%) Frame = -3 Query: 199 VFSLAFSALDLWILS---------MRTLLFLNMLPLTFRYMSWYMCLSIFFAS 68 V +LA + L LWI + + LL+ N LPLT W++ L I AS Sbjct: 261 VKTLALTILFLWIRASYPRFRYDQLMHLLWKNFLPLTLALCMWHVTLPIISAS 313
>Y505_MYCPN (P75281) Hypothetical protein MPN505 (P02_orf253)| Length = 253 Score = 28.9 bits (63), Expect = 8.7 Identities = 17/46 (36%), Positives = 25/46 (54%), Gaps = 1/46 (2%) Frame = +3 Query: 72 AKKIDKHMYHDMYLKVKGNMFKNKRVLMES-IHKSKAEKAREKTLS 206 AKK DKH Y D++LK+K N K+ E + K + K K ++ Sbjct: 153 AKKGDKH-YFDLFLKIKSNSDPKKQFTTEKFLTKEEKNKVNGKEIT 197
>NXF1_COTJA (P58797) Nuclear RNA export factor 1 (Tip-associating protein)| (Tip-associated protein) (mRNA export factor TAP) Length = 616 Score = 28.9 bits (63), Expect = 8.7 Identities = 14/33 (42%), Positives = 20/33 (60%) Frame = +1 Query: 184 RQERRPYLTSLRPSVPRARQAGRGRLPGGRRDW 282 R R P+LT +R +P ++G G GGRR+W Sbjct: 85 RPSRAPHLT-VRRDLPPPDRSGGGSRDGGRRNW 116
>POLS_RUBVH (P21480) Structural polyprotein [Contains: Nucleocapsid protein C;| Membrane glycoprotein E2; Membrane glycoprotein E1] Length = 1063 Score = 28.9 bits (63), Expect = 8.7 Identities = 13/22 (59%), Positives = 15/22 (68%) Frame = +1 Query: 229 PRARQAGRGRLPGGRRDWPRAP 294 PR R+ RGR G R+DW RAP Sbjct: 59 PRRRRGNRGR--GQRKDWSRAP 78 Database: uniprot_sprot.fasta Posted date: May 25, 2006 5:36 PM Number of letters in database: 80,573,946 Number of sequences in database: 219,361 Lambda K H 0.318 0.135 0.401 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 51,984,807 Number of Sequences: 219361 Number of extensions: 730113 Number of successful extensions: 2233 Number of sequences better than 10.0: 30 Number of HSP's better than 10.0 without gapping: 2167 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 2231 length of database: 80,573,946 effective HSP length: 104 effective length of database: 57,760,402 effective search space used: 3869946934 frameshift window, decay const: 50, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits)
