ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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| Clone Name | bags7p06 |
|---|---|
| Clone Library Name | barley_pub |
>FEN1B_ORYSA (Q75LI2) Flap endonuclease 1b (EC 3.1.-.-) (OsFEN-1b)| Length = 412 Score = 296 bits (759), Expect = 2e-80 Identities = 146/169 (86%), Positives = 161/169 (95%) Frame = +1 Query: 73 MGIKGLTKLLAEHAPRAAAQRRVEDYRGRVIAIDASLSIYQFLVVVGRKGTEVLTNEAGE 252 MGIKGLTKLLAEHAP AA +RRVEDYRGRV+AID SLSIYQFL+VVGRKGTEVLTNEAGE Sbjct: 1 MGIKGLTKLLAEHAPGAAVRRRVEDYRGRVVAIDTSLSIYQFLIVVGRKGTEVLTNEAGE 60 Query: 253 VTSHLQGMLNRTVRLLEAGIKPVFVFDGEPPDLKKKELAKRSLKRDDASKDLHSAIEVGD 432 VTSHLQGMLNRTVR+LEAGIKPVFVFDGEPPD+KKKELAKRSLKRD +S+DL+ AIEVGD Sbjct: 61 VTSHLQGMLNRTVRILEAGIKPVFVFDGEPPDMKKKELAKRSLKRDGSSEDLNRAIEVGD 120 Query: 433 EDSVEKFSKRTVKITKEHNDGCKRLLRLMGVPVVEAPGEAEAQCASLCK 579 ED +EKFSKRTVK+TK+HN+ CKRLL LMGVPVV+APGEAEAQCA+LC+ Sbjct: 121 EDLIEKFSKRTVKVTKKHNEDCKRLLSLMGVPVVQAPGEAEAQCAALCE 169
>FEN1A_ORYSA (Q9SXQ6) Flap endonuclease 1a (EC 3.1.-.-) (OsFEN-1a)| Length = 380 Score = 261 bits (666), Expect = 1e-69 Identities = 126/168 (75%), Positives = 151/168 (89%) Frame = +1 Query: 73 MGIKGLTKLLAEHAPRAAAQRRVEDYRGRVIAIDASLSIYQFLVVVGRKGTEVLTNEAGE 252 MGIKGLTKLLA++AP+A +++ E Y GR IA+DAS+SIYQFL+VVGR G E LTNEAGE Sbjct: 1 MGIKGLTKLLADNAPKAMKEQKFESYFGRRIAVDASMSIYQFLIVVGRTGMETLTNEAGE 60 Query: 253 VTSHLQGMLNRTVRLLEAGIKPVFVFDGEPPDLKKKELAKRSLKRDDASKDLHSAIEVGD 432 VTSHLQGM NRT+RLLEAGIKPV+VFDG+PPDLKK+ELAKR KR+DA+K+L A+E GD Sbjct: 61 VTSHLQGMFNRTIRLLEAGIKPVYVFDGKPPDLKKQELAKRYSKREDATKELTEAVEEGD 120 Query: 433 EDSVEKFSKRTVKITKEHNDGCKRLLRLMGVPVVEAPGEAEAQCASLC 576 +D++EKFSKRTVK+TK+HN+ CKRLLRLMGVPVVEAP EAEA+CA+LC Sbjct: 121 KDAIEKFSKRTVKVTKQHNEECKRLLRLMGVPVVEAPCEAEAECAALC 168
>FEN1_HUMAN (P39748) Flap endonuclease 1 (EC 3.1.-.-) (Maturation factor 1)| (MF1) Length = 380 Score = 202 bits (513), Expect = 7e-52 Identities = 101/169 (59%), Positives = 126/169 (74%) Frame = +1 Query: 73 MGIKGLTKLLAEHAPRAAAQRRVEDYRGRVIAIDASLSIYQFLVVVGRKGTEVLTNEAGE 252 MGI+GL KL+A+ AP A + ++ Y GR +AIDAS+SIYQFL+ V R+G +VL NE GE Sbjct: 1 MGIQGLAKLIADVAPSAIRENDIKSYFGRKVAIDASMSIYQFLIAV-RQGGDVLQNEEGE 59 Query: 253 VTSHLQGMLNRTVRLLEAGIKPVFVFDGEPPDLKKKELAKRSLKRDDASKDLHSAIEVGD 432 TSHL GM RT+R++E GIKPV+VFDG+PP LK ELAKRS +R +A K L A G Sbjct: 60 TTSHLMGMFYRTIRMMENGIKPVYVFDGKPPQLKSGELAKRSERRAEAEKQLQQAQAAGA 119 Query: 433 EDSVEKFSKRTVKITKEHNDGCKRLLRLMGVPVVEAPGEAEAQCASLCK 579 E VEKF+KR VK+TK+HND CK LL LMG+P ++AP EAEA CA+L K Sbjct: 120 EQEVEKFTKRLVKVTKQHNDECKHLLSLMGIPYLDAPSEAEASCAALVK 168
>FEN1_MOUSE (P39749) Flap endonuclease 1 (EC 3.1.-.-)| Length = 378 Score = 191 bits (485), Expect = 1e-48 Identities = 101/169 (59%), Positives = 125/169 (73%) Frame = +1 Query: 73 MGIKGLTKLLAEHAPRAAAQRRVEDYRGRVIAIDASLSIYQFLVVVGRKGTEVLTNEAGE 252 MGI GL KL+A+ AP A + ++ Y GR +AIDAS+SIYQFL+ V R+G +VL NE GE Sbjct: 1 MGIHGLAKLIADVAPSAIRENDIKSYFGRKVAIDASMSIYQFLIAV-RQGGDVLQNEEGE 59 Query: 253 VTSHLQGMLNRTVRLLEAGIKPVFVFDGEPPDLKKKELAKRSLKRDDASKDLHSAIEVGD 432 TS L GM RT+R+ E GIKPV+VFDG+PP LK ELAKRS +R +A K L A E G Sbjct: 60 TTS-LMGMFYRTIRM-ENGIKPVYVFDGKPPQLKSGELAKRSERRAEAEKQLQQAQEAGM 117 Query: 433 EDSVEKFSKRTVKITKEHNDGCKRLLRLMGVPVVEAPGEAEAQCASLCK 579 E+ VEKF+KR VK+TK+HND CK LL LMG+P ++AP EAEA CA+L K Sbjct: 118 EEEVEKFTKRLVKVTKQHNDECKHLLSLMGIPYLDAPSEAEASCAALAK 166
>RAD2_SCHPO (P39750) DNA-repair protein rad2| Length = 380 Score = 189 bits (480), Expect = 5e-48 Identities = 92/169 (54%), Positives = 122/169 (72%) Frame = +1 Query: 73 MGIKGLTKLLAEHAPRAAAQRRVEDYRGRVIAIDASLSIYQFLVVVGRKGTEVLTNEAGE 252 MGIKGL ++L+EHAP + +++Y GR +AIDAS+S+YQFL+ V + + L NE GE Sbjct: 1 MGIKGLAQVLSEHAPASVKHNDIKNYFGRKVAIDASMSLYQFLIQVRSQDGQQLMNEQGE 60 Query: 253 VTSHLQGMLNRTVRLLEAGIKPVFVFDGEPPDLKKKELAKRSLKRDDASKDLHSAIEVGD 432 TSHL GM RT+R+++ GIKP FVFDG+PP LK ELAKR + A +D EVG Sbjct: 61 TTSHLMGMFYRTLRIVDNGIKPCFVFDGKPPTLKSGELAKRVARHQKAREDQEETKEVGT 120 Query: 433 EDSVEKFSKRTVKITKEHNDGCKRLLRLMGVPVVEAPGEAEAQCASLCK 579 + V++F+KRTVK+T++HND KRLL LMG+P V AP EAEAQCA+L + Sbjct: 121 AEMVDRFAKRTVKVTRQHNDEAKRLLELMGIPFVNAPCEAEAQCAALAR 169
>RAD27_YEAST (P26793) Structure-specific endonuclease RAD27| Length = 382 Score = 171 bits (432), Expect = 2e-42 Identities = 87/169 (51%), Positives = 116/169 (68%) Frame = +1 Query: 73 MGIKGLTKLLAEHAPRAAAQRRVEDYRGRVIAIDASLSIYQFLVVVGRKGTEVLTNEAGE 252 MGIKGL +++EH P A + ++ + GR +AIDAS+S+YQFL+ V ++ LTNEAGE Sbjct: 1 MGIKGLNAIISEHVPSAIRKSDIKSFFGRKVAIDASMSLYQFLIAVRQQDGGQLTNEAGE 60 Query: 253 VTSHLQGMLNRTVRLLEAGIKPVFVFDGEPPDLKKKELAKRSLKRDDASKDLHSAIEVGD 432 TSHL GM RT+R+++ GIKP +VFDG+PPDLK EL KRS +R + K L E Sbjct: 61 TTSHLMGMFYRTLRMIDNGIKPCYVFDGKPPDLKSHELTKRSSRRVETEKKL---AEATT 117 Query: 433 EDSVEKFSKRTVKITKEHNDGCKRLLRLMGVPVVEAPGEAEAQCASLCK 579 E K +R VK++KEHN+ ++LL LMG+P + AP EAEAQCA L K Sbjct: 118 ELEKMKQERRLVKVSKEHNEEAQKLLGLMGIPYIIAPTEAEAQCAELAK 166
>FEN_PYRFU (O93634) Flap structure-specific endonuclease (EC 3.1.-.-)| Length = 340 Score = 137 bits (345), Expect = 2e-32 Identities = 69/156 (44%), Positives = 101/156 (64%) Frame = +1 Query: 100 LAEHAPRAAAQRRVEDYRGRVIAIDASLSIYQFLVVVGRKGTEVLTNEAGEVTSHLQGML 279 + E PR + +E+ G+ IAIDA +IYQFL + +K L + G +TSHL G+ Sbjct: 5 IGEIIPRKEIE--LENLYGKKIAIDALNAIYQFLSTIRQKDGTPLMDSKGRITSHLSGLF 62 Query: 280 NRTVRLLEAGIKPVFVFDGEPPDLKKKELAKRSLKRDDASKDLHSAIEVGDEDSVEKFSK 459 RT+ L+EAGIKPV+VFDGEPP+ KKKEL KR R++A + A+E G+ + K+++ Sbjct: 63 YRTINLMEAGIKPVYVFDGEPPEFKKKELEKRREAREEAEEKWREALEKGEIEEARKYAQ 122 Query: 460 RTVKITKEHNDGCKRLLRLMGVPVVEAPGEAEAQCA 567 R ++ + + K+LL LMG+P+V+AP E EAQ A Sbjct: 123 RATRVNEMLIEDAKKLLELMGIPIVQAPSEGEAQAA 158
>FEN_PYRAE (Q8ZYN2) Flap structure-specific endonuclease (EC 3.1.-.-)| Length = 346 Score = 136 bits (343), Expect = 4e-32 Identities = 73/169 (43%), Positives = 105/169 (62%) Frame = +1 Query: 73 MGIKGLTKLLAEHAPRAAAQRRVEDYRGRVIAIDASLSIYQFLVVVGRKGTEVLTNEAGE 252 MG+ L KL+ + R ++E G+ IA+DA ++YQFL + + L + AG Sbjct: 1 MGVTELGKLIGKEVRREV---KLESLSGKCIALDAYNALYQFLASIRQPDGTPLMDRAGR 57 Query: 253 VTSHLQGMLNRTVRLLEAGIKPVFVFDGEPPDLKKKELAKRSLKRDDASKDLHSAIEVGD 432 +TSHL G+ RT+ LLEAGI+PV+VFDG+PP+ K E+ +R R+ A +++ AI+ G Sbjct: 58 ITSHLSGLFYRTINLLEAGIRPVYVFDGKPPEFKLAEIEERRKTREKAMEEVLRAIKEGR 117 Query: 433 EDSVEKFSKRTVKITKEHNDGCKRLLRLMGVPVVEAPGEAEAQCASLCK 579 + V K++KR V IT E D KRLL MGVP V+AP E EAQ A + + Sbjct: 118 REDVAKYAKRAVFITSEMVDEAKRLLSYMGVPWVQAPSEGEAQAAYMAR 166
>FEN_PYRKO (Q5JGN0) Flap structure-specific endonuclease (EC 3.1.-.-)| Length = 340 Score = 135 bits (340), Expect = 8e-32 Identities = 67/156 (42%), Positives = 100/156 (64%) Frame = +1 Query: 100 LAEHAPRAAAQRRVEDYRGRVIAIDASLSIYQFLVVVGRKGTEVLTNEAGEVTSHLQGML 279 + E PR + +E G+ +AIDA ++YQFL + ++ L + G +TSHL G Sbjct: 5 IGELIPRKEIE--LESLYGKKVAIDAFNAMYQFLSTIRQRDGTPLMDSQGRITSHLSGFF 62 Query: 280 NRTVRLLEAGIKPVFVFDGEPPDLKKKELAKRSLKRDDASKDLHSAIEVGDEDSVEKFSK 459 RT+ L+EAGIKP +VFDG+PPD KK+EL KR R++A + + A+E GD + +K++ Sbjct: 63 YRTINLMEAGIKPAYVFDGKPPDFKKRELEKRREAREEAEEKWYEALEKGDLEEAKKYAM 122 Query: 460 RTVKITKEHNDGCKRLLRLMGVPVVEAPGEAEAQCA 567 R ++ +E + K+LL LMG+PVV+AP E EAQ A Sbjct: 123 RATRVNEELINDAKKLLELMGIPVVQAPSEGEAQAA 158
>FEN_PYRAB (Q9V0P9) Flap structure-specific endonuclease (EC 3.1.-.-)| Length = 343 Score = 132 bits (331), Expect = 9e-31 Identities = 68/156 (43%), Positives = 99/156 (63%) Frame = +1 Query: 100 LAEHAPRAAAQRRVEDYRGRVIAIDASLSIYQFLVVVGRKGTEVLTNEAGEVTSHLQGML 279 + E PR + +E+ G+ IAIDA +IYQFL + ++ L + G +TSHL G+ Sbjct: 5 IGELIPRKEIE--LENLYGKKIAIDALNAIYQFLSTIRQRDGTPLMDSKGRITSHLSGLF 62 Query: 280 NRTVRLLEAGIKPVFVFDGEPPDLKKKELAKRSLKRDDASKDLHSAIEVGDEDSVEKFSK 459 RT+ L+EAGIKPV+VFDG+PP KKKEL KR R++A A+ GD + K+++ Sbjct: 63 YRTINLMEAGIKPVYVFDGKPPAFKKKELEKRREAREEAEIKWKEALAKGDIEEARKYAQ 122 Query: 460 RTVKITKEHNDGCKRLLRLMGVPVVEAPGEAEAQCA 567 R K+ + + K+LL+LMG+P+V+AP E EAQ A Sbjct: 123 RATKVNEMLIEDAKKLLQLMGIPIVQAPSEGEAQAA 158
>FEN_PYRHO (O50123) Flap structure-specific endonuclease (EC 3.1.-.-)| Length = 343 Score = 128 bits (322), Expect = 1e-29 Identities = 61/143 (42%), Positives = 94/143 (65%) Frame = +1 Query: 139 VEDYRGRVIAIDASLSIYQFLVVVGRKGTEVLTNEAGEVTSHLQGMLNRTVRLLEAGIKP 318 +E+ G+ IAIDA +IYQFL + ++ L + G +TSHL G+ RT+ L+EAGIKP Sbjct: 16 LENLYGKKIAIDALNAIYQFLSTIRQRDGTPLMDSKGRITSHLSGLFYRTINLMEAGIKP 75 Query: 319 VFVFDGEPPDLKKKELAKRSLKRDDASKDLHSAIEVGDEDSVEKFSKRTVKITKEHNDGC 498 +VFDG+PP+ K+KEL KR R++A A+ G+ + K+++R K+ + + Sbjct: 76 AYVFDGKPPEFKRKELEKRREAREEAELKWKEALAKGNLEEARKYAQRATKVNEMLIEDA 135 Query: 499 KRLLRLMGVPVVEAPGEAEAQCA 567 K+LL+LMG+P+++AP E EAQ A Sbjct: 136 KKLLQLMGIPIIQAPSEGEAQAA 158
>FEN_METKA (Q8TXU4) Flap structure-specific endonuclease (EC 3.1.-.-)| Length = 348 Score = 123 bits (309), Expect = 3e-28 Identities = 63/142 (44%), Positives = 96/142 (67%) Frame = +1 Query: 154 GRVIAIDASLSIYQFLVVVGRKGTEVLTNEAGEVTSHLQGMLNRTVRLLEAGIKPVFVFD 333 GR IAIDA ++YQFL + + G ++ + G +TSHL G+L RTV L+E GIKPV+VFD Sbjct: 22 GREIAIDAFNALYQFLTTIMKDGRPLMDSR-GRITSHLNGLLYRTVNLVEEGIKPVYVFD 80 Query: 334 GEPPDLKKKELAKRSLKRDDASKDLHSAIEVGDEDSVEKFSKRTVKITKEHNDGCKRLLR 513 GEPPDLK++ L +R ++++A + L A ++ EK++++ ++ + + KRLL Sbjct: 81 GEPPDLKRETLERRRERKEEAMEKLRRA---KTKEEREKYARQVARLDESLVEDAKRLLD 137 Query: 514 LMGVPVVEAPGEAEAQCASLCK 579 LMG+P V+AP E EAQCA + + Sbjct: 138 LMGIPWVQAPSEGEAQCAYMAR 159
>FEN_METAC (Q8TIY5) Flap structure-specific endonuclease (EC 3.1.-.-)| Length = 338 Score = 122 bits (305), Expect = 1e-27 Identities = 61/150 (40%), Positives = 100/150 (66%), Gaps = 2/150 (1%) Frame = +1 Query: 130 QRRVE--DYRGRVIAIDASLSIYQFLVVVGRKGTEVLTNEAGEVTSHLQGMLNRTVRLLE 303 +R++E D RV+A+DA +++QFL ++ ++ L N G+VTSHL G+L RT L+E Sbjct: 11 KRKIELSDLSNRVVAVDAFNTLHQFLSIIRQRDGSPLVNSRGKVTSHLSGLLYRTASLVE 70 Query: 304 AGIKPVFVFDGEPPDLKKKELAKRSLKRDDASKDLHSAIEVGDEDSVEKFSKRTVKITKE 483 AGIKPVF+FDG+PPDLK + L++R R+ + + +A GD ++ K+++ + ++ +E Sbjct: 71 AGIKPVFIFDGKPPDLKSETLSRRKEVRETSLEKWENAKAEGDLEAAYKYAQASSRVDQE 130 Query: 484 HNDGCKRLLRLMGVPVVEAPGEAEAQCASL 573 + K LL +MG+P ++AP E EAQ A + Sbjct: 131 IVEDSKYLLGIMGIPWIQAPCEGEAQAAHM 160
>FEN_SULAC (Q4JAN1) Flap structure-specific endonuclease (EC 3.1.-.-)| Length = 349 Score = 120 bits (301), Expect = 3e-27 Identities = 56/143 (39%), Positives = 93/143 (65%) Frame = +1 Query: 139 VEDYRGRVIAIDASLSIYQFLVVVGRKGTEVLTNEAGEVTSHLQGMLNRTVRLLEAGIKP 318 + + +G+ I+IDA +IYQFL + + L + G +TSHL G+ RT+ ++E+GI P Sbjct: 16 LNEMKGKKISIDAYNTIYQFLAAIRQPDGTPLIDSKGRITSHLNGLFYRTISIIESGIIP 75 Query: 319 VFVFDGEPPDLKKKELAKRSLKRDDASKDLHSAIEVGDEDSVEKFSKRTVKITKEHNDGC 498 +FVFDG+PP+ K +E+ +R +++A K L A G+ + K+++ V+++ E + Sbjct: 76 IFVFDGKPPEKKSEEIERRKRAKEEAEKKLEKAKLEGEYREIRKYAQAAVRLSNEMVEES 135 Query: 499 KRLLRLMGVPVVEAPGEAEAQCA 567 K+LL MG+PVV+APGE EA+ A Sbjct: 136 KKLLDAMGIPVVQAPGEGEAEAA 158
>FEN_AERPE (Q9YFY5) Flap structure-specific endonuclease (EC 3.1.-.-)| Length = 351 Score = 117 bits (293), Expect = 2e-26 Identities = 57/155 (36%), Positives = 91/155 (58%) Frame = +1 Query: 115 PRAAAQRRVEDYRGRVIAIDASLSIYQFLVVVGRKGTEVLTNEAGEVTSHLQGMLNRTVR 294 P A + + G V+A+DA +YQFL + + L + G VTSHL G+ RT+ Sbjct: 12 PEARREVELRALSGYVLALDAYNMLYQFLTAIRQPDGTPLLDREGRVTSHLSGLFYRTIN 71 Query: 295 LLEAGIKPVFVFDGEPPDLKKKELAKRSLKRDDASKDLHSAIEVGDEDSVEKFSKRTVKI 474 L+E GIKPV+VFDG+PP++K +E+ +R ++ +A A+E G+ + K++ ++ Sbjct: 72 LVEEGIKPVYVFDGKPPEMKSREVEERLRRKAEAEARYRRAVEAGEVEEARKYAMMAARL 131 Query: 475 TKEHNDGCKRLLRLMGVPVVEAPGEAEAQCASLCK 579 T + + K LL MG+P V+AP E EAQ A + + Sbjct: 132 TSDMVEESKELLDAMGMPWVQAPAEGEAQAAYMAR 166
>FEN_ARCFU (O29975) Flap structure-specific endonuclease (EC 3.1.-.-)| Length = 336 Score = 116 bits (291), Expect = 4e-26 Identities = 57/143 (39%), Positives = 93/143 (65%) Frame = +1 Query: 139 VEDYRGRVIAIDASLSIYQFLVVVGRKGTEVLTNEAGEVTSHLQGMLNRTVRLLEAGIKP 318 +E + G+ IA+DA ++YQF+ ++ + L + G +TSHL G+L R ++E GI+P Sbjct: 16 LEYFSGKKIAVDAFNTLYQFISIIRQPDGTPLKDSQGRITSHLSGILYRVSNMVEVGIRP 75 Query: 319 VFVFDGEPPDLKKKELAKRSLKRDDASKDLHSAIEVGDEDSVEKFSKRTVKITKEHNDGC 498 VFVFDGEPP+ KK E+ +R +R +A + +A++ GD+D+ +K+++ ++ + D Sbjct: 76 VFVFDGEPPEFKKAEIEERKKRRAEAEEMWIAALQAGDKDA-KKYAQAAGRVDEYIVDSA 134 Query: 499 KRLLRLMGVPVVEAPGEAEAQCA 567 K LL MG+P V+AP E EAQ A Sbjct: 135 KTLLSYMGIPFVDAPSEGEAQAA 157
>FEN_METMA (Q8PYF6) Flap structure-specific endonuclease (EC 3.1.-.-)| Length = 338 Score = 116 bits (290), Expect = 5e-26 Identities = 59/150 (39%), Positives = 98/150 (65%), Gaps = 2/150 (1%) Frame = +1 Query: 130 QRRVE--DYRGRVIAIDASLSIYQFLVVVGRKGTEVLTNEAGEVTSHLQGMLNRTVRLLE 303 +R++E D RV+A+DA +++QFL ++ ++ L N G+VTSHL G+L RT L+E Sbjct: 11 KRKIELSDLSNRVVAVDAFNTLHQFLSIIRQRDGSPLVNSQGKVTSHLSGLLYRTASLVE 70 Query: 304 AGIKPVFVFDGEPPDLKKKELAKRSLKRDDASKDLHSAIEVGDEDSVEKFSKRTVKITKE 483 AGIKPVFVFDG+PP++K L +R R+ + + +A G+ ++ K+++ + K+ ++ Sbjct: 71 AGIKPVFVFDGKPPEMKTGTLNRRKEIRESSKEKWENAKAEGNLEAAYKYAQASSKVDQD 130 Query: 484 HNDGCKRLLRLMGVPVVEAPGEAEAQCASL 573 + K LL +MG+P ++AP E EAQ A + Sbjct: 131 IIEDSKYLLDIMGIPWIQAPCEGEAQAAHM 160
>FEN_SULTO (Q976H6) Flap structure-specific endonuclease (EC 3.1.-.-)| Length = 351 Score = 115 bits (289), Expect = 7e-26 Identities = 59/158 (37%), Positives = 95/158 (60%), Gaps = 2/158 (1%) Frame = +1 Query: 100 LAEHAPRAAAQRRVEDYRGRVIAIDASLSIYQFLVVVGRKGTEVLTNEAGEVTSHLQGML 279 LAE + + +G+ I+IDA ++YQFL + + L + G VTSHL G+ Sbjct: 3 LAELVEEIKKELSFAELKGKKISIDAYNALYQFLAAIRQPDGTPLMDSQGRVTSHLNGLF 62 Query: 280 NRTVRLLEAGIKPVFVFDGEPPDLKKKELAKRSLKRDDASKDLHSAIEVGD--EDSVEKF 453 RT+ +LE GI P++VFDG+PP+ K +EL +R +++A K L A G ++K+ Sbjct: 63 YRTISILEEGIIPIYVFDGKPPEQKAQELERRKKVKEEAEKKLEQAKTEGSIKTSELKKY 122 Query: 454 SKRTVKITKEHNDGCKRLLRLMGVPVVEAPGEAEAQCA 567 ++ ++++T E + K LL+ MG+PVV+AP E EA+ A Sbjct: 123 AQMSIRLTNEMAEESKELLKAMGIPVVQAPSEGEAEAA 160
>FEN_METTH (O27670) Flap structure-specific endonuclease (EC 3.1.-.-)| Length = 328 Score = 115 bits (289), Expect = 7e-26 Identities = 58/148 (39%), Positives = 95/148 (64%) Frame = +1 Query: 136 RVEDYRGRVIAIDASLSIYQFLVVVGRKGTEVLTNEAGEVTSHLQGMLNRTVRLLEAGIK 315 R+ED RGR +A+DA+ ++YQFL + ++ L + G VTSHL G+L RT ++E I+ Sbjct: 15 RLEDLRGRTVAVDAANTLYQFLSSIRQRDGTPLMDSRGRVTSHLSGILYRTAAVMEREIR 74 Query: 316 PVFVFDGEPPDLKKKELAKRSLKRDDASKDLHSAIEVGDEDSVEKFSKRTVKITKEHNDG 495 ++VFDG LK + +++R+ R + + A+E GD D +K++ R+ +++ E + Sbjct: 75 VIYVFDGRSHHLKGETVSRRADIRKKSEVEWKRALEEGDIDRAKKYAVRSSRMSSEILES 134 Query: 496 CKRLLRLMGVPVVEAPGEAEAQCASLCK 579 KRLL L+G+P V+APGE EAQ + + K Sbjct: 135 SKRLLELLGIPYVQAPGEGEAQASYMVK 162
>FEN_METJA (Q58839) Flap structure-specific endonuclease (EC 3.1.-.-)| Length = 326 Score = 115 bits (287), Expect = 1e-25 Identities = 59/146 (40%), Positives = 86/146 (58%) Frame = +1 Query: 142 EDYRGRVIAIDASLSIYQFLVVVGRKGTEVLTNEAGEVTSHLQGMLNRTVRLLEAGIKPV 321 ED +G+ +AID ++YQFL + + L N GE+TS G+ +T+ LLE I P+ Sbjct: 17 EDLKGKKVAIDGMNALYQFLTSIRLRDGSPLRNRKGEITSAYNGVFYKTIHLLENDITPI 76 Query: 322 FVFDGEPPDLKKKELAKRSLKRDDASKDLHSAIEVGDEDSVEKFSKRTVKITKEHNDGCK 501 +VFDGEPP LK+K R ++ A + AI+ D + K++KR +T + + CK Sbjct: 77 WVFDGEPPKLKEKTRKVRREMKEKAELKMKEAIKKEDFEEAAKYAKRVSYLTPKMVENCK 136 Query: 502 RLLRLMGVPVVEAPGEAEAQCASLCK 579 LL LMG+P VEAP E EAQ + + K Sbjct: 137 YLLSLMGIPYVEAPSEGEAQASYMAK 162
>FEN_SULSO (Q980U8) Flap structure-specific endonuclease (EC 3.1.-.-)| Length = 349 Score = 113 bits (283), Expect = 3e-25 Identities = 53/145 (36%), Positives = 91/145 (62%) Frame = +1 Query: 145 DYRGRVIAIDASLSIYQFLVVVGRKGTEVLTNEAGEVTSHLQGMLNRTVRLLEAGIKPVF 324 + +G+ ++ID ++YQFL + + L + G VTSHL G+ RT+ +LE G+ P++ Sbjct: 18 ELKGKRVSIDGYNALYQFLAAIRQPDGTPLMDSQGRVTSHLSGLFYRTINILEEGVIPIY 77 Query: 325 VFDGEPPDLKKKELAKRSLKRDDASKDLHSAIEVGDEDSVEKFSKRTVKITKEHNDGCKR 504 VFDG+PP+ K +EL +R +++A + L A G + + K+S+ ++++ + K+ Sbjct: 78 VFDGKPPEQKSEELERRRKAKEEAERKLERAKSEGKIEELRKYSQAILRLSNIMVEESKK 137 Query: 505 LLRLMGVPVVEAPGEAEAQCASLCK 579 LLR MG+P+V+AP E EA+ A L K Sbjct: 138 LLRAMGIPIVQAPSEGEAEAAYLNK 162
>FEN_NANEQ (P61942) Flap structure-specific endonuclease (EC 3.1.-.-)| Length = 339 Score = 107 bits (268), Expect = 2e-23 Identities = 58/142 (40%), Positives = 82/142 (57%) Frame = +1 Query: 154 GRVIAIDASLSIYQFLVVVGRKGTEVLTNEAGEVTSHLQGMLNRTVRLLEAGIKPVFVFD 333 G+VIAIDA ++YQFL + + G E L + G +TSHL G+ RT+ LLE GIKP++VFD Sbjct: 23 GKVIAIDAFNALYQFLFSIRQDG-EPLRDSKGRITSHLSGLFYRTINLLEYGIKPIYVFD 81 Query: 334 GEPPDLKKKELAKRSLKRDDASKDLHSAIEVGDEDSVEKFSKRTVKITKEHNDGCKRLLR 513 G PP K KR ++ A++ G+ K++K K+ + K+LL Sbjct: 82 GTPPKFKIVAWEKRKKHKEQLESKYKEALKKGNIQEAIKYAKSLGKLDSYMVEEAKKLLE 141 Query: 514 LMGVPVVEAPGEAEAQCASLCK 579 MG+P V+AP E EA+ A L K Sbjct: 142 AMGIPYVQAPSEGEAEAAYLTK 163
>FEN_PICTO (Q6L2I9) Flap structure-specific endonuclease (EC 3.1.-.-)| Length = 338 Score = 106 bits (265), Expect = 4e-23 Identities = 64/165 (38%), Positives = 92/165 (55%) Frame = +1 Query: 73 MGIKGLTKLLAEHAPRAAAQRRVEDYRGRVIAIDASLSIYQFLVVVGRKGTEVLTNEAGE 252 MG+ L+ +L +H + ++D G ++++DA IYQFL + E L + G Sbjct: 1 MGVN-LSSILIKH------ETSLKDNSGSIVSVDAYNIIYQFLSSIRGDDGEPLKDSNGN 53 Query: 253 VTSHLQGMLNRTVRLLEAGIKPVFVFDGEPPDLKKKELAKRSLKRDDASKDLHSAIEVGD 432 +TSHL G+ RT LLE IKPV+VFDG+P LK + L +RSL ++ L AI D Sbjct: 54 ITSHLSGIFYRTSNLLENNIKPVYVFDGKPFHLKSETLRERSLIKEKNIMKLEEAIASND 113 Query: 433 EDSVEKFSKRTVKITKEHNDGCKRLLRLMGVPVVEAPGEAEAQCA 567 + + S R IT + + K LL LMG+P V+AP E EAQ + Sbjct: 114 DAKIRSLSSRINYITDDIVNESKTLLNLMGLPYVQAPSEGEAQAS 158
>FEN_THEVO (Q97B98) Flap structure-specific endonuclease (EC 3.1.-.-)| Length = 335 Score = 105 bits (262), Expect = 9e-23 Identities = 60/150 (40%), Positives = 88/150 (58%) Frame = +1 Query: 130 QRRVEDYRGRVIAIDASLSIYQFLVVVGRKGTEVLTNEAGEVTSHLQGMLNRTVRLLEAG 309 Q ++D +V AID +YQ L V + L + +G VTSHL G+ RTV L+E G Sbjct: 13 QTSLKDQANQVFAIDTYNILYQLLSNVRQYDGTPLMDSSGNVTSHLYGIFYRTVNLVENG 72 Query: 310 IKPVFVFDGEPPDLKKKELAKRSLKRDDASKDLHSAIEVGDEDSVEKFSKRTVKITKEHN 489 IKP+FVFDG+P LK + L R L ++ A +L AI G E++++++ R IT + Sbjct: 73 IKPIFVFDGKPSPLKNRTLEIRQLAKEKAKAELEEAISRG-EENLKQYYSRINYITPQIV 131 Query: 490 DGCKRLLRLMGVPVVEAPGEAEAQCASLCK 579 + K LL MG+P V+AP E EAQ + + + Sbjct: 132 NDTKELLTYMGIPYVDAPSEGEAQASYMTR 161
>FEN_THEAC (Q9HJD4) Flap structure-specific endonuclease (EC 3.1.-.-)| Length = 336 Score = 103 bits (256), Expect = 5e-22 Identities = 57/147 (38%), Positives = 87/147 (59%) Frame = +1 Query: 139 VEDYRGRVIAIDASLSIYQFLVVVGRKGTEVLTNEAGEVTSHLQGMLNRTVRLLEAGIKP 318 ++D + +ID +YQ L V + L + G VTSHL G+ RT+ LLE I+P Sbjct: 16 LKDQGNQTFSIDTYNILYQLLSNVRQYDGMPLMDSHGNVTSHLYGIFYRTINLLENRIRP 75 Query: 319 VFVFDGEPPDLKKKELAKRSLKRDDASKDLHSAIEVGDEDSVEKFSKRTVKITKEHNDGC 498 V+VFDG+P LK + +++R + ++ A +L AIE G+ED + ++ R IT + D Sbjct: 76 VYVFDGKPSPLKNRTISERQMMKEKAKAELEEAIERGEED-LRQYYSRINYITPQIVDDT 134 Query: 499 KRLLRLMGVPVVEAPGEAEAQCASLCK 579 K+LL MG+P V+AP E EAQ + + K Sbjct: 135 KKLLDYMGIPYVDAPSEGEAQASYMTK 161
>FEN_HALSA (Q9HQ27) Flap structure-specific endonuclease (EC 3.1.-.-)| Length = 327 Score = 85.1 bits (209), Expect = 1e-16 Identities = 49/146 (33%), Positives = 76/146 (52%), Gaps = 1/146 (0%) Frame = +1 Query: 145 DYRGRVIAIDASLSIYQFLVV-VGRKGTEVLTNEAGEVTSHLQGMLNRTVRLLEAGIKPV 321 D G V+A+DA +Y++L V G +V T G ++L G + + E G+ PV Sbjct: 19 DLEGSVVAVDAHNWLYKYLTTTVQWTGADVYTTSDGTEVANLVGAVQGLPKFFEHGLTPV 78 Query: 322 FVFDGEPPDLKKKELAKRSLKRDDASKDLHSAIEVGDEDSVEKFSKRTVKITKEHNDGCK 501 FV+DG +LK E+A R +R+ + L A E GD + RT ++T ++ + Sbjct: 79 FVWDGGVTELKDDEIADRREQRERYEEQLDDAREAGDAAEAARLDARTQRLTPTIHETTR 138 Query: 502 RLLRLMGVPVVEAPGEAEAQCASLCK 579 L L+ +P VEAP E EAQ A + + Sbjct: 139 ELFDLLDIPQVEAPAEGEAQAAYMTR 164
>ERCC5_MOUSE (P35689) DNA-repair protein complementing XP-G cells homolog| (Xeroderma pigmentosum group G-complementing protein homolog) (DNA excision repair protein ERCC-5) Length = 1170 Score = 65.9 bits (159), Expect = 8e-11 Identities = 44/117 (37%), Positives = 63/117 (53%) Frame = +1 Query: 73 MGIKGLTKLLAEHAPRAAAQRRVEDYRGRVIAIDASLSIYQFLVVVGRKGTEVLTNEAGE 252 MG++GL KLL R + E G+V+A+D S+ + Q L V V+ N Sbjct: 1 MGVQGLWKLLECSGHRVSP----EALEGKVLAVDISIWLNQALKGVRDSHGNVIEN---- 52 Query: 253 VTSHLQGMLNRTVRLLEAGIKPVFVFDGEPPDLKKKELAKRSLKRDDASKDLHSAIE 423 +HL + +R +LL I+P+FVFDG+ P LKK+ LAKR ++D AS D E Sbjct: 53 --AHLLTLFHRLCKLLFFRIRPIFVFDGDAPLLKKQTLAKRRQRKDSASIDSRKTTE 107 Score = 37.7 bits (86), Expect = 0.024 Identities = 17/25 (68%), Positives = 20/25 (80%) Frame = +1 Query: 499 KRLLRLMGVPVVEAPGEAEAQCASL 573 + LLRL GVP ++AP EAEAQCA L Sbjct: 772 QELLRLFGVPYIQAPMEAEAQCAML 796
>RAD13_SCHPO (P28706) DNA-repair protein rad13| Length = 1112 Score = 64.7 bits (156), Expect = 2e-10 Identities = 44/111 (39%), Positives = 60/111 (54%) Frame = +1 Query: 73 MGIKGLTKLLAEHAPRAAAQRRVEDYRGRVIAIDASLSIYQFLVVVGRKGTEVLTNEAGE 252 MG+ GL +L E R ++E + +AIDAS+ IYQFL V K L + Sbjct: 1 MGVSGLWDIL-EPVKRPV---KLETLVNKRLAIDASIWIYQFLKAVRDKEGNQLKS---- 52 Query: 253 VTSHLQGMLNRTVRLLEAGIKPVFVFDGEPPDLKKKELAKRSLKRDDASKD 405 SH+ G R +LL GIKPVFVFDG P LK++ + KR +R D ++ Sbjct: 53 --SHVVGFFRRICKLLFFGIKPVFVFDGGAPSLKRQTIQKRQARRLDREEN 101 Score = 38.1 bits (87), Expect = 0.018 Identities = 16/26 (61%), Positives = 20/26 (76%) Frame = +1 Query: 496 CKRLLRLMGVPVVEAPGEAEAQCASL 573 C+ LLRL G+P + AP EAEAQC+ L Sbjct: 760 CQELLRLFGLPYIVAPQEAEAQCSKL 785
>ERCC5_HUMAN (P28715) DNA-repair protein complementing XP-G cells (Xeroderma| pigmentosum group G-complementing protein) (DNA excision repair protein ERCC-5) Length = 1186 Score = 61.2 bits (147), Expect = 2e-09 Identities = 42/117 (35%), Positives = 64/117 (54%) Frame = +1 Query: 73 MGIKGLTKLLAEHAPRAAAQRRVEDYRGRVIAIDASLSIYQFLVVVGRKGTEVLTNEAGE 252 MG++GL KLL E + R + +E G+++A+D S+ + Q L V + + N Sbjct: 1 MGVQGLWKLL-ECSGRQVSPEALE---GKILAVDISIWLNQALKGVRDRHGNSIENP--- 53 Query: 253 VTSHLQGMLNRTVRLLEAGIKPVFVFDGEPPDLKKKELAKRSLKRDDASKDLHSAIE 423 HL + +R +LL I+P+FVFDG+ P LKK+ L KR ++D AS D E Sbjct: 54 ---HLLTLFHRLCKLLFFRIRPIFVFDGDAPLLKKQTLVKRRQRKDLASSDSRKTTE 107 Score = 37.0 bits (84), Expect = 0.041 Identities = 16/25 (64%), Positives = 20/25 (80%) Frame = +1 Query: 499 KRLLRLMGVPVVEAPGEAEAQCASL 573 + LLRL G+P ++AP EAEAQCA L Sbjct: 773 QELLRLFGIPYIQAPMEAEAQCAIL 797
>UVH3_ARATH (Q9ATY5) DNA-repair protein UVH3 (EC 3.1.-.-) (UV hypersensitive| protein 3) (XPG homolog) (ERCC5 homolog) (RAD2 homolog) (AtUVH3) (AtXPG) (AtRAD2) Length = 1479 Score = 60.1 bits (144), Expect = 5e-09 Identities = 38/117 (32%), Positives = 62/117 (52%) Frame = +1 Query: 73 MGIKGLTKLLAEHAPRAAAQRRVEDYRGRVIAIDASLSIYQFLVVVGRKGTEVLTNEAGE 252 MG++GL +LLA R + VE + +AIDAS+ + QF+ + + +++ N Sbjct: 1 MGVQGLWELLAPVGRRVS----VETLANKRLAIDASIWMVQFIKAMRDEKGDMVQN---- 52 Query: 253 VTSHLQGMLNRTVRLLEAGIKPVFVFDGEPPDLKKKELAKRSLKRDDASKDLHSAIE 423 +HL G R +LL KP+FVFDG P LK++ + R +R++A + E Sbjct: 53 --AHLIGFFRRICKLLFLRTKPIFVFDGATPALKRRTVIARRRQRENAQTKIRKTAE 107 Score = 40.4 bits (93), Expect = 0.004 Identities = 19/50 (38%), Positives = 29/50 (58%) Frame = +1 Query: 418 IEVGDEDSVEKFSKRTVKITKEHNDGCKRLLRLMGVPVVEAPGEAEAQCA 567 + +GDE K + ++ E C+ LL++ G+P + AP EAEAQCA Sbjct: 905 VSLGDEQ--RKLERNAESVSSEMFAECQELLQIFGIPYIIAPMEAEAQCA 952
>RAD2_YEAST (P07276) DNA-repair protein RAD2| Length = 1031 Score = 59.3 bits (142), Expect = 8e-09 Identities = 39/112 (34%), Positives = 57/112 (50%), Gaps = 8/112 (7%) Frame = +1 Query: 136 RVEDYRGRVIAIDASLSIYQFLVVVGRKGTEVLTNEAGEVTSHLQGMLNRTVRLLEAGIK 315 R+E + +A+DAS+ IYQFL V + + N SH+ G R +LL GI+ Sbjct: 18 RLESLEDKRMAVDASIWIYQFLKAVRDQEGNAVKN------SHITGFFRRICKLLYFGIR 71 Query: 316 PVFVFDGEPPDLKKKEL--------AKRSLKRDDASKDLHSAIEVGDEDSVE 447 PVFVFDG P LK++ + KR + A K L ++ G D+V+ Sbjct: 72 PVFVFDGGVPVLKRETIRQRKERRQGKRESAKSTARKLLALQLQNGSNDNVK 123 Score = 32.3 bits (72), Expect = 1.0 Identities = 15/35 (42%), Positives = 21/35 (60%) Frame = +1 Query: 469 KITKEHNDGCKRLLRLMGVPVVEAPGEAEAQCASL 573 ++T + + LL G+P + AP EAEAQCA L Sbjct: 766 EVTMDMIKEVQELLSRFGIPYITAPMEAEAQCAEL 800
>ERCC5_XENLA (P14629) DNA-repair protein complementing XP-G cells homolog| (Xeroderma pigmentosum group G-complementing protein homolog) Length = 1196 Score = 58.9 bits (141), Expect = 1e-08 Identities = 41/117 (35%), Positives = 63/117 (53%) Frame = +1 Query: 73 MGIKGLTKLLAEHAPRAAAQRRVEDYRGRVIAIDASLSIYQFLVVVGRKGTEVLTNEAGE 252 MG++GL KLL E + R +E G+++A+D S+ + Q + + + N Sbjct: 1 MGVQGLWKLL-ECSGRPINPGTLE---GKILAVDISIWLNQAVKGARDRQGNAIQN---- 52 Query: 253 VTSHLQGMLNRTVRLLEAGIKPVFVFDGEPPDLKKKELAKRSLKRDDASKDLHSAIE 423 +HL + +R +LL I+P+FVFDGE P LK++ LAKR + D AS D E Sbjct: 53 --AHLLTLFHRLCKLLFFRIRPIFVFDGEAPLLKRQTLAKRRQRTDKASNDARKTNE 107 Score = 33.9 bits (76), Expect = 0.35 Identities = 15/25 (60%), Positives = 19/25 (76%) Frame = +1 Query: 499 KRLLRLMGVPVVEAPGEAEAQCASL 573 + LL+L G+P + AP EAEAQCA L Sbjct: 806 QELLQLFGIPYIVAPMEAEAQCAIL 830
>EXO1_HUMAN (Q9UQ84) Exonuclease 1 (EC 3.1.-.-) (hExo1) (Exonuclease I) (hExoI)| Length = 846 Score = 57.8 bits (138), Expect = 2e-08 Identities = 52/171 (30%), Positives = 81/171 (47%), Gaps = 2/171 (1%) Frame = +1 Query: 73 MGIKGLTKLLAEHAPRAAAQRRVEDYRGRVIAIDASLSIYQFLVVVGRKGTEVLTNEAGE 252 MGI+GL + + E A+ V Y+G+V+A+D +++ + K + GE Sbjct: 1 MGIQGLLQFIKE----ASEPIHVRKYKGQVVAVDTYCWLHKGAIACAEKLAK------GE 50 Query: 253 VTSHLQGMLNRTVR-LLEAGIKPVFVFDG-EPPDLKKKELAKRSLKRDDASKDLHSAIEV 426 T G + V LL GIKP+ VFDG P K+ E ++R ++ + K E Sbjct: 51 PTDRYVGFCMKFVNMLLSHGIKPILVFDGCTLPSKKEVERSRRERRQANLLKGKQLLREG 110 Query: 427 GDEDSVEKFSKRTVKITKEHNDGCKRLLRLMGVPVVEAPGEAEAQCASLCK 579 ++ E F+ R++ IT + R GV + AP EA+AQ A L K Sbjct: 111 KVSEARECFT-RSINITHAMAHKVIKAARSQGVDCLVAPYEADAQLAYLNK 160
>EXO1_MOUSE (Q9QZ11) Exonuclease 1 (EC 3.1.-.-) (mExo1) (Exonuclease I)| Length = 837 Score = 56.6 bits (135), Expect = 5e-08 Identities = 47/171 (27%), Positives = 78/171 (45%), Gaps = 2/171 (1%) Frame = +1 Query: 73 MGIKGLTKLLAEHAPRAAAQRRVEDYRGRVIAIDASLSIYQFLVVVGRKGTEVLTNEAGE 252 MGI+GL + + E A+ V+ Y+G+ +A+D +++ + K + GE Sbjct: 1 MGIQGLLQFIQE----ASEPVNVKKYKGQAVAVDTYCWLHKGAIACAEKLAK------GE 50 Query: 253 VTSHLQGMLNRTVR-LLEAGIKPVFVFDG-EPPDLKKKELAKRSLKRDDASKDLHSAIEV 426 T G + V LL G+KP+ +FDG P K+ E ++R ++ + K + Sbjct: 51 PTDRYVGFCMKFVNMLLSYGVKPILIFDGCTLPSKKEVERSRRERRQSNLLKG-KQLLRE 109 Query: 427 GDEDSVEKFSKRTVKITKEHNDGCKRLLRLMGVPVVEAPGEAEAQCASLCK 579 G R++ IT + R +GV + AP EA+AQ A L K Sbjct: 110 GKVSEARDCFARSINITHAMAHKVIKAARALGVDCLVAPYEADAQLAYLNK 160
>EXO1_XENLA (Q9W6K2) Exonuclease 1 (EC 3.1.-.-) (Exonuclease I)| Length = 734 Score = 56.2 bits (134), Expect = 7e-08 Identities = 52/171 (30%), Positives = 80/171 (46%), Gaps = 2/171 (1%) Frame = +1 Query: 73 MGIKGLTKLLAEHAPRAAAQRRVEDYRGRVIAIDASLSIYQFLVVVGRKGTEVLTNEAGE 252 MGI+GL + L E A+ V+ Y+G+ +A+D +++ K + GE Sbjct: 1 MGIQGLLQFLKE----ASEPVHVKKYKGKTVAVDTYCWLHKGAFACAEKLAK------GE 50 Query: 253 VTS-HLQGMLNRTVRLLEAGIKPVFVFDG-EPPDLKKKELAKRSLKRDDASKDLHSAIEV 426 T ++Q + LL G+KP+ VFDG P K E A+R ++ + K E Sbjct: 51 PTDQYVQFCMKLVHMLLSFGVKPILVFDGCTLPSKKDVEKARREKRQTNLQKGKQLLREG 110 Query: 427 GDEDSVEKFSKRTVKITKEHNDGCKRLLRLMGVPVVEAPGEAEAQCASLCK 579 ++ E FS R+V IT + R GV + AP EA++Q A L K Sbjct: 111 KLAEARECFS-RSVNITSSMAHEVIKAARSEGVDYIVAPYEADSQLAYLNK 160
>EXO1_BRARE (Q803U7) Exonuclease 1 (EC 3.1.-.-) (Exonuclease I)| Length = 806 Score = 54.7 bits (130), Expect = 2e-07 Identities = 51/171 (29%), Positives = 79/171 (46%), Gaps = 2/171 (1%) Frame = +1 Query: 73 MGIKGLTKLLAEHAPRAAAQRRVEDYRGRVIAIDASLSIYQFLVVVGRKGTEVLTNEAGE 252 MGI+GL + + + A+ V+ YRG+ +A+D +++ K + GE Sbjct: 1 MGIQGLLQFIKD----ASEPMHVKKYRGQTVAVDTYCWLHKGAFSCAEKLAK------GE 50 Query: 253 VTSHLQGMLNRTV-RLLEAGIKPVFVFDGEP-PDLKKKELAKRSLKRDDASKDLHSAIEV 426 T + V LL G+KP+ VFDG P ++ E ++R ++ + K E Sbjct: 51 PTDQYVSYCMKFVDMLLSFGVKPILVFDGRNLPSKQEVEKSRRERRQANLQKGKQLLREG 110 Query: 427 GDEDSVEKFSKRTVKITKEHNDGCKRLLRLMGVPVVEAPGEAEAQCASLCK 579 ++ E F+ R+V IT R R GV V AP EA+AQ A L K Sbjct: 111 KITEARECFT-RSVNITPSMAHDVIRAARTRGVDCVVAPYEADAQLAFLNK 160
>EXO1_SCHPO (P53695) Exodeoxyribonuclease 1 (EC 3.1.-.-) (Exodeoxyribonuclease| I) (Exonuclease I) (EXO I) Length = 571 Score = 52.4 bits (124), Expect = 9e-07 Identities = 46/169 (27%), Positives = 76/169 (44%) Frame = +1 Query: 73 MGIKGLTKLLAEHAPRAAAQRRVEDYRGRVIAIDASLSIYQFLVVVGRKGTEVLTNEAGE 252 MGIKGL LL + VE++ G+ + +D + +++ + E+ N+ E Sbjct: 1 MGIKGLLGLLKPMQKSS----HVEEFSGKTLGVDGYVWLHKAVFTCAH---ELAFNK--E 51 Query: 253 VTSHLQGMLNRTVRLLEAGIKPVFVFDGEPPDLKKKELAKRSLKRDDASKDLHSAIEVGD 432 +L+ +++ + L G+KP+ VFDG P K KR +R +A + + G Sbjct: 52 TDKYLKYAIHQALMLQYYGVKPLIVFDGGPLPCKASTEQKRKERRQEAFELGKKLWDEGK 111 Query: 433 EDSVEKFSKRTVKITKEHNDGCKRLLRLMGVPVVEAPGEAEAQCASLCK 579 + R V +T E LR G+ + AP EA+AQ L K Sbjct: 112 KSQAIMQFSRCVDVTPEMAWKLIIALREHGIESIVAPYEADAQLVYLEK 160
>EXO1_DROME (Q24558) Exonuclease 1 (EC 3.1.-.-) (Exonuclease I) (Protein tosca)| Length = 732 Score = 50.1 bits (118), Expect = 5e-06 Identities = 45/168 (26%), Positives = 72/168 (42%), Gaps = 1/168 (0%) Frame = +1 Query: 73 MGIKGLTKLLAEHAPRAAAQRRVEDYRGRVIAIDASLSIYQFLVVVGRKGTEVLTNEAGE 252 MGI GL + +A++Q ++D RG +A+D +++ + K GE Sbjct: 1 MGITGLIPFVG----KASSQLHLKDIRGSTVAVDTYCWLHKGVFGCAEKLAR------GE 50 Query: 253 VTS-HLQGMLNRTVRLLEAGIKPVFVFDGEPPDLKKKELAKRSLKRDDASKDLHSAIEVG 429 T ++Q L LL IKP+ VFDG+ K +R R + + + +G Sbjct: 51 DTDVYIQYCLKYVNMLLSYDIKPILVFDGQHLPAKALTEKRRRDSRKQSKERAAELLRLG 110 Query: 430 DEDSVEKFSKRTVKITKEHNDGCKRLLRLMGVPVVEAPGEAEAQCASL 573 + +R V +T + R R V + AP EA+AQ A L Sbjct: 111 RIEEARSHMRRCVDVTHDMALRLIRECRSRNVDCIVAPYEADAQMAWL 158
>DIN7_YEAST (Q12086) DNA damage-inducible protein DIN7| Length = 430 Score = 42.4 bits (98), Expect = 0.001 Identities = 43/169 (25%), Positives = 70/169 (41%) Frame = +1 Query: 73 MGIKGLTKLLAEHAPRAAAQRRVEDYRGRVIAIDASLSIYQFLVVVGRKGTEVLTNEAGE 252 MGI GL L R Q ++ Y + +AID +++ E++ N+ Sbjct: 1 MGIPGLLPQLK----RIQKQVSLKKYMYQTLAIDGYAWLHRASCACA---FELVMNKP-- 51 Query: 253 VTSHLQGMLNRTVRLLEAGIKPVFVFDGEPPDLKKKELAKRSLKRDDASKDLHSAIEVGD 432 +LQ + R L IKP VFDG+ +K +R KR + G+ Sbjct: 52 TNKYLQFFIKRLQLLKRLKIKPYIVFDGDSLFVKNHTETRRRKKRLENEMIAKKLWSAGN 111 Query: 433 EDSVEKFSKRTVKITKEHNDGCKRLLRLMGVPVVEAPGEAEAQCASLCK 579 + ++ +++V IT E +L +P + AP EA+ Q L K Sbjct: 112 RYNAMEYFQKSVDITPEMAKCIIDYCKLHSIPYIVAPFEADPQMVYLEK 160
>KCY_SYMTH (Q67NU0) Cytidylate kinase (EC 2.7.4.14) (CK) (Cytidine| monophosphate kinase) (CMP kinase) Length = 226 Score = 31.6 bits (70), Expect = 1.7 Identities = 30/121 (24%), Positives = 54/121 (44%), Gaps = 3/121 (2%) Frame = +1 Query: 151 RGRVIAIDASLSIYQFLVVVGRK-GTEVLTNEAGE--VTSHLQGMLNRTVRLLEAGIKPV 321 R R+I + S++ +V+ GR G+ VL + + +T+ LQ R V L A Sbjct: 113 RQRLIEVQRSMARAGGVVMDGRDIGSYVLPHADRKFYITASLQERARRRVAQLRA----- 167 Query: 322 FVFDGEPPDLKKKELAKRSLKRDDASKDLHSAIEVGDEDSVEKFSKRTVKITKEHNDGCK 501 +G DL E D +K +HS +++ + ++ KR ++ +E C+ Sbjct: 168 ---EGHEADLAAVEAEIARRDEQDMNKGVHSLVQLPESIVIDTTGKRVDEVVEEILRHCR 224 Query: 502 R 504 R Sbjct: 225 R 225
>SECA_AQUAE (O67718) Preprotein translocase secA subunit| Length = 984 Score = 31.2 bits (69), Expect = 2.2 Identities = 31/93 (33%), Positives = 45/93 (48%), Gaps = 7/93 (7%) Frame = +1 Query: 280 NRTVRLLEAGIKPVFVFDG--EPPDLKKKELAKRSLKRDDA----SKDLHSAIEVGDEDS 441 NRTV L E GIK V G DLK +L L+ A KD+H + G+ Sbjct: 319 NRTVNLTEQGIKKVEKMLGIDNLYDLKHVDLLHAILQSIRAHHLFKKDVHYIVRDGEVLI 378 Query: 442 VEKFSKRTVKITKEHNDGCKRLLRLM-GVPVVE 537 V++F+ R + + +DG + + + GVPV E Sbjct: 379 VDEFTGRVLP-GRRWSDGLHQAIEVKEGVPVKE 410
>LIN3_CAEEL (Q03345) Protein lin-3 precursor (Abnormal cell lineage protein 3)| (Lethal protein 94) Length = 438 Score = 31.2 bits (69), Expect = 2.2 Identities = 25/93 (26%), Positives = 41/93 (44%), Gaps = 1/93 (1%) Frame = +1 Query: 223 TEVLTNEAGEVTSHLQGMLNRTVRLLEAGIKPVFVFDGEPPDLKKKELAKRSLK-RDDAS 399 TE +EAG+ RT + + I+ ++GE D K E + +LK +DA+ Sbjct: 79 TETTISEAGDDEK-------RTEEVAKELIEKEAEYEGEYEDEKVDEEVEEALKYNEDAT 131 Query: 400 KDLHSAIEVGDEDSVEKFSKRTVKITKEHNDGC 498 +D S ++ +EK + K HN C Sbjct: 132 QDATSTLKPAVRKEIEKLKEAKCKDYCHHNATC 164
>DPO1_THEFI (O52225) DNA polymerase I, thermostable (EC 2.7.7.7) (TFI| polymerase 1) Length = 833 Score = 30.4 bits (67), Expect = 3.8 Identities = 35/149 (23%), Positives = 59/149 (39%), Gaps = 2/149 (1%) Frame = +1 Query: 139 VEDYRGRVIAIDASLSIYQFLVVVGRKGTEVLTNEAGEVTSHLQGMLNRTVRLL-EAGIK 315 +E+ RV+ +D Y+ + LT GE + G ++ L E G Sbjct: 7 LEEPPKRVLLVDGHHLAYRTFYALS------LTTSRGEPVQMVYGFARSLLKALKEDGQA 60 Query: 316 PVFVFDGEPPDLKKKELAKRSLKRDDASKDLHSAIEVGDEDSVEKFSKRTVKITKEHNDG 495 V VFD + P + + + A + G + E F ++ + Sbjct: 61 VVVVFDAKAPSFRH---------------EAYEAYKAGRAPTPEDFPRQLALV------- 98 Query: 496 CKRLLRLMGVPVVEAPG-EAEAQCASLCK 579 KRL+ L+G+ +EAPG EA+ +L K Sbjct: 99 -KRLVDLLGLVRLEAPGYEADDVLGTLAK 126
>A4_CAEEL (Q10651) Beta-amyloid-like protein precursor| Length = 686 Score = 30.4 bits (67), Expect = 3.8 Identities = 18/66 (27%), Positives = 32/66 (48%) Frame = +1 Query: 346 DLKKKELAKRSLKRDDASKDLHSAIEVGDEDSVEKFSKRTVKITKEHNDGCKRLLRLMGV 525 D+K KE+ + A K + ++++ DED E S T + E D + LR+ Sbjct: 532 DIKPKEIKVTIEEEKKAPKLVETSVQTDDEDDDEDSSSSTSSESDEDEDKNIKELRVDIE 591 Query: 526 PVVEAP 543 P+++ P Sbjct: 592 PIIDEP 597
>OXR1_GIBZE (Q4I8S2) Oxidation resistance protein 1| Length = 326 Score = 30.0 bits (66), Expect = 5.0 Identities = 17/50 (34%), Positives = 29/50 (58%) Frame = -2 Query: 572 SDAHCASASPGASTTGTPINLNSLLQPSLCSFVIFTVLLLNFSTESSSPT 423 SD + + +P +S TGTP+N N + + ++T L+ FS+E S P+ Sbjct: 4 SDRNDSPETPESSGTGTPVNSNRASASYITN--MWTGLIRRFSSEGSFPS 51
>SYK_MYCFE (Q49158) Lysyl-tRNA synthetase (EC 6.1.1.6) (Lysine--tRNA ligase)| (LysRS) Length = 488 Score = 30.0 bits (66), Expect = 5.0 Identities = 28/90 (31%), Positives = 43/90 (47%), Gaps = 5/90 (5%) Frame = +1 Query: 226 EVLTNEAGEVTSHLQGMLNRTVRLLEAGIKPV----FVFDGEPPDLKKKELAKRSLKRDD 393 E T E E S+++GM+NRT L++ K + FV +G DL K KR D+ Sbjct: 260 EFTTIEFYEAYSNVEGMMNRTETLIKELCKKIGKSKFVTNGVEVDLSKP--FKRVNMIDE 317 Query: 394 ASKDLHSAI-EVGDEDSVEKFSKRTVKITK 480 SK ++ E+++E +KI K Sbjct: 318 VSKKTGKNFRKITLEEAIEVAKAYKIKIEK 347
>SYT_AGRT5 (Q8UEL1) Threonyl-tRNA synthetase (EC 6.1.1.3) (Threonine--tRNA| ligase) (ThrRS) Length = 667 Score = 30.0 bits (66), Expect = 5.0 Identities = 29/93 (31%), Positives = 41/93 (44%), Gaps = 3/93 (3%) Frame = +1 Query: 112 APRAAAQRRVEDYRGRVIAI---DASLSIYQFLVVVGRKGTEVLTNEAGEVTSHLQGMLN 282 A R A D+R I + S++ ++V GRK E T V G N Sbjct: 580 ALREAGMAVETDFRNEKINYKVREHSVTKVPVIIVCGRKEAEERT-----VNIRRLGSQN 634 Query: 283 RTVRLLEAGIKPVFVFDGEPPDLKKKELAKRSL 381 +T LE I + V + PPD+K+K AK+ L Sbjct: 635 QTSMSLEEAITSL-VDEATPPDVKRKLAAKKQL 666
>TLR7_HUMAN (Q9NYK1) Toll-like receptor 7 precursor| Length = 1049 Score = 30.0 bits (66), Expect = 5.0 Identities = 14/23 (60%), Positives = 15/23 (65%) Frame = +1 Query: 316 PVFVFDGEPPDLKKKELAKRSLK 384 P VFDG PP+LK LAK LK Sbjct: 666 PSGVFDGMPPNLKNLSLAKNGLK 688
>IDH_ECOLI (P08200) Isocitrate dehydrogenase [NADP] (EC 1.1.1.42)| (Oxalosuccinate decarboxylase) (IDH) (NADP(+)-specific ICDH) (IDP) Length = 416 Score = 29.6 bits (65), Expect = 6.5 Identities = 24/85 (28%), Positives = 41/85 (48%), Gaps = 17/85 (20%) Frame = +1 Query: 310 IKPVFVFDGEPPDLKKKELAKRSLKRDDASKDLHSAIE----VGDEDSVEKFSKRTVKIT 477 ++PV + G P +K EL + R++ S+D+++ IE D + V KF + + + Sbjct: 128 LRPVRYYQGTPSPVKHPELTDMVIFREN-SEDIYAGIEWKADSADAEKVIKFLREEMGVK 186 Query: 478 K----EH---------NDGCKRLLR 513 K EH +G KRL+R Sbjct: 187 KIRFPEHCGIGIKPCSEEGTKRLVR 211
>NSBP1_MOUSE (Q9JL35) Nucleosome-binding protein 1 (Nucleosome-binding protein| 45) (NBP-45) (GARP45 protein) Length = 406 Score = 29.3 bits (64), Expect = 8.5 Identities = 16/43 (37%), Positives = 23/43 (53%) Frame = +1 Query: 331 DGEPPDLKKKELAKRSLKRDDASKDLHSAIEVGDEDSVEKFSK 459 DG+ + + KE+ K +D +DLH EVG ED E+ K Sbjct: 223 DGKCKEEENKEVGKEGQPEEDGKEDLHE--EVGKEDLHEEDGK 263
>MTP_HUMAN (P55157) Microsomal triglyceride transfer protein large subunit| precursor Length = 894 Score = 29.3 bits (64), Expect = 8.5 Identities = 25/99 (25%), Positives = 46/99 (46%), Gaps = 11/99 (11%) Frame = +1 Query: 106 EHAPRAAAQRRVED-YRGRVIAIDASLSIYQFLVVVGRKGTEVLTNEAG----------E 252 E +PR+A+ ++ Y G I ++L+I+Q++ G G++V+ G E Sbjct: 622 ERSPRSASTYSLDILYSGSGILRRSNLNIFQYIGKAGLHGSQVVIEAQGLEALIAATPDE 681 Query: 253 VTSHLQGMLNRTVRLLEAGIKPVFVFDGEPPDLKKKELA 369 +L + L + ++PV F+G DL K L+ Sbjct: 682 GEENLDSYAGMSAILFDVQLRPVTFFNGY-SDLMSKMLS 719
>EFG2_HUMAN (Q969S9) Elongation factor G 2, mitochondrial precursor (mEF-G 2)| (Elongation factor G2) Length = 779 Score = 29.3 bits (64), Expect = 8.5 Identities = 20/46 (43%), Positives = 26/46 (56%), Gaps = 6/46 (13%) Frame = +1 Query: 280 NRTVRLLEAGIK---PVFVFDGEPPDLKKK---ELAKRSLKRDDAS 399 N RLL AG++ PVF EPP L K+ E A + L+R+D S Sbjct: 473 NEAERLLLAGVEIPEPVFFCTIEPPSLSKQPDLEHALKCLQREDPS 518 Database: uniprot_sprot.fasta Posted date: May 25, 2006 5:36 PM Number of letters in database: 80,573,946 Number of sequences in database: 219,361 Lambda K H 0.317 0.135 0.373 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 68,494,391 Number of Sequences: 219361 Number of extensions: 1244796 Number of successful extensions: 4037 Number of sequences better than 10.0: 52 Number of HSP's better than 10.0 without gapping: 3922 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 4019 length of database: 80,573,946 effective HSP length: 106 effective length of database: 57,321,680 effective search space used: 4929664480 frameshift window, decay const: 50, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits)
