ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日:2016年5月1日

Clone Information

BLAST Search Result

Clone Name bags8e11
Clone Library Name barley_pub

No. Definition Score
(bits)
E
Value
1DUT_XYLFT (Q87F19) Deoxyuridine 5'-triphosphate nucleotidohydrol... 32 0.88
2GATA5_HUMAN (Q9BWX5) Transcription factor GATA-5 (GATA-binding f... 31 2.0
3ADEN_ADEM1 (P30202) Adenain (EC 3.4.22.39) (Endoprotease) (Late ... 30 3.3
4DUT_XYLFA (Q9PGZ6) Deoxyuridine 5'-triphosphate nucleotidohydrol... 30 4.4
5FA9_CHICK (Q804X6) Coagulation factor IX precursor (EC 3.4.21.22... 30 4.4
6AOX1_CANAL (O93853) Alternative oxidase 1, mitochondrial precurs... 30 5.7
7RYR1_RABIT (P11716) Ryanodine receptor 1 (Skeletal muscle-type r... 29 7.5
8HRP1_SCHPO (Q9US25) Chromodomain helicase hrp1 (EC 3.6.1.-) (ATP... 29 9.7
9PLA2R_BOVIN (P49259) 180 kDa secretory phospholipase A2 receptor... 29 9.7
10CABL1_MOUSE (Q9ESJ1) CDK5 and ABL1 enzyme substrate 1 (Interacto... 29 9.7

>DUT_XYLFT (Q87F19) Deoxyuridine 5'-triphosphate nucleotidohydrolase (EC|
           3.6.1.23) (dUTPase) (dUTP pyrophosphatase)
          Length = 155

 Score = 32.3 bits (72), Expect = 0.88
 Identities = 20/55 (36%), Positives = 24/55 (43%)
 Frame = +3

Query: 315 IKVTKPRLGLIWPLQVYGSVALRNSMGRKASYLFRCTKDSCQTLTQKDPFLRLTG 479
           IK+  PRLG +WPL  Y + A        A    R   D+  TL   D  L  TG
Sbjct: 10  IKILDPRLGTVWPLPTYATEA-------SAGLDLRAALDAPMTLVPGDAELLSTG 57



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>GATA5_HUMAN (Q9BWX5) Transcription factor GATA-5 (GATA-binding factor 5)|
          Length = 397

 Score = 31.2 bits (69), Expect = 2.0
 Identities = 14/23 (60%), Positives = 15/23 (65%), Gaps = 1/23 (4%)
 Frame = -2

Query: 350 PDETQSWF-GDFDGEELHGSPGK 285
           PD  QSW  G FDG  LHG PG+
Sbjct: 148 PDVAQSWTAGPFDGSVLHGLPGR 170



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>ADEN_ADEM1 (P30202) Adenain (EC 3.4.22.39) (Endoprotease) (Late L3 23 kDa|
           protein)
          Length = 204

 Score = 30.4 bits (67), Expect = 3.3
 Identities = 17/49 (34%), Positives = 21/49 (42%)
 Frame = +2

Query: 248 FSFPRRCSSSKYSSQEIHAALLHQSHQTKIGSHLATAGLWLCCFEELYG 394
           F + R    S  SS       L +SHQT  G H A  GL+   F   +G
Sbjct: 85  FEYERLLKRSAVSSSSSKCVTLVKSHQTVQGPHSAACGLFCVLFLAAFG 133



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>DUT_XYLFA (Q9PGZ6) Deoxyuridine 5'-triphosphate nucleotidohydrolase (EC|
           3.6.1.23) (dUTPase) (dUTP pyrophosphatase)
          Length = 155

 Score = 30.0 bits (66), Expect = 4.4
 Identities = 20/61 (32%), Positives = 26/61 (42%)
 Frame = +3

Query: 297 SMQLFSIKVTKPRLGLIWPLQVYGSVALRNSMGRKASYLFRCTKDSCQTLTQKDPFLRLT 476
           ++Q   IK+  PRLG +W L  Y + A        A    R   D+  TL   D  L  T
Sbjct: 4   AVQPLQIKILDPRLGTVWLLPTYATEA-------SAGLDLRAALDAPMTLVPGDAELLST 56

Query: 477 G 479
           G
Sbjct: 57  G 57



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>FA9_CHICK (Q804X6) Coagulation factor IX precursor (EC 3.4.21.22) (Christmas|
           factor) [Contains: Coagulation factor IXa light chain;
           Coagulation factor IXa heavy chain]
          Length = 471

 Score = 30.0 bits (66), Expect = 4.4
 Identities = 15/34 (44%), Positives = 22/34 (64%), Gaps = 2/34 (5%)
 Frame = +1

Query: 262 SMQFFKILFPGDPCSSSPSKSPN--QDWVSSGHC 357
           +M+F+KI   GD C+S+P K+    +D VSS  C
Sbjct: 77  TMEFWKIYIDGDQCNSNPCKNGAVCKDGVSSYEC 110



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>AOX1_CANAL (O93853) Alternative oxidase 1, mitochondrial precursor (EC|
           1.-.-.-)
          Length = 379

 Score = 29.6 bits (65), Expect = 5.7
 Identities = 13/34 (38%), Positives = 17/34 (50%)
 Frame = -2

Query: 491 GTRWAC*AQKWILLSEGLAAILGASEEIAGFTSH 390
           GTRW    +KW+     L +I G    +AGF  H
Sbjct: 162 GTRWEMTEEKWMTRCIFLESIAGVPGSVAGFVRH 195



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>RYR1_RABIT (P11716) Ryanodine receptor 1 (Skeletal muscle-type ryanodine|
            receptor) (RyR1) (RYR-1) (Skeletal muscle calcium release
            channel)
          Length = 5037

 Score = 29.3 bits (64), Expect = 7.5
 Identities = 28/116 (24%), Positives = 49/116 (42%)
 Frame = +3

Query: 66   PEMELSDSELAGVKSYREYIELTEKKEEQLRKDCEIKDKGTYGEQEIEEHXXXXXXXXXX 245
            PE E S S  + ++S  E + L +KKEE+  ++   ++K     QE+  H          
Sbjct: 2053 PEEETSLS--SRLRSLLETVRLVKKKEEKPEEELPAEEKKPQSLQELVSHMVVRWAQEDY 2110

Query: 246  XXXXXVDAVLQNTLPRRSMQLFSIKVTKPRLGLIWPLQVYGSVALRNSMGRKASYL 413
                 +   + + L R+   L  +    PR   I P  V  +++L   +G+  S L
Sbjct: 2111 VQSPELVRAMFSLLHRQYDGLGELLRALPRAYTISPSSVEDTMSLLECLGQIRSLL 2166



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>HRP1_SCHPO (Q9US25) Chromodomain helicase hrp1 (EC 3.6.1.-) (ATP-dependent|
            helicase hrp1)
          Length = 1373

 Score = 28.9 bits (63), Expect = 9.7
 Identities = 12/26 (46%), Positives = 17/26 (65%)
 Frame = +3

Query: 135  EKKEEQLRKDCEIKDKGTYGEQEIEE 212
            +KKEE+  +  E   +GT GE E+EE
Sbjct: 1247 KKKEEETNRGDETSPEGTVGEDEVEE 1272



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>PLA2R_BOVIN (P49259) 180 kDa secretory phospholipase A2 receptor precursor|
           (PLA2-R)
          Length = 1463

 Score = 28.9 bits (63), Expect = 9.7
 Identities = 21/71 (29%), Positives = 35/71 (49%), Gaps = 3/71 (4%)
 Frame = -2

Query: 446 EGLAAILG---ASEEIAGFTSHRVPQSNRAINLQWPDETQSWFGDFDGEELHGSPGKSIL 276
           E L  +LG   ASE   G +SH++P     ++ +W + +   F ++   E H  P +S L
Sbjct: 423 EFLVTLLGDENASETWIGLSSHKIP-----VSFEWSNGSSVTFTNWHTLEPHIFPNRSQL 477

Query: 275 KNCIDAGRRTG 243
             C+ A +  G
Sbjct: 478 --CVSAEQSEG 486



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>CABL1_MOUSE (Q9ESJ1) CDK5 and ABL1 enzyme substrate 1 (Interactor with CDK3 1)|
           (Ik3-1)
          Length = 568

 Score = 28.9 bits (63), Expect = 9.7
 Identities = 12/24 (50%), Positives = 16/24 (66%)
 Frame = -1

Query: 282 YFEELHRRGKENGRNKRTCCFYCV 211
           YFE+L  RGK N +N++ C   CV
Sbjct: 479 YFEKLALRGKLNKQNRKLCAGACV 502


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.318    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 75,959,038
Number of Sequences: 219361
Number of extensions: 1531142
Number of successful extensions: 4721
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 4540
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 4718
length of database: 80,573,946
effective HSP length: 105
effective length of database: 57,541,041
effective search space used: 4315578075
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
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