ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日:2016年5月1日

Clone Information

BLAST Search Result

Clone Name bags8e07
Clone Library Name barley_pub

No. Definition Score
(bits)
E
Value
1EFTU_MYCPE (Q8EX18) Elongation factor Tu (EF-Tu) 31 2.4
2EFTU_MYCGA (P18906) Elongation factor Tu (EF-Tu) 30 4.1

>EFTU_MYCPE (Q8EX18) Elongation factor Tu (EF-Tu)|
          Length = 394

 Score = 30.8 bits (68), Expect = 2.4
 Identities = 12/21 (57%), Positives = 17/21 (80%)
 Frame = +2

Query: 44  CSVLSKAGSAKVVEFDEIDKA 106
           C+ L+K G AK +++DEIDKA
Sbjct: 33  CTYLAKKGGAKAMKYDEIDKA 53



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>EFTU_MYCGA (P18906) Elongation factor Tu (EF-Tu)|
          Length = 394

 Score = 30.0 bits (66), Expect = 4.1
 Identities = 12/21 (57%), Positives = 18/21 (85%)
 Frame = +2

Query: 44  CSVLSKAGSAKVVEFDEIDKA 106
           C+VLSKAG+++  ++DEID A
Sbjct: 33  CTVLSKAGTSEAKKYDEIDAA 53


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.318    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 67,075,068
Number of Sequences: 219361
Number of extensions: 1194825
Number of successful extensions: 2530
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 2459
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 2530
length of database: 80,573,946
effective HSP length: 105
effective length of database: 57,541,041
effective search space used: 4027872870
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
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