ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日：2016年5月1日

Clone Information

BLAST Search Result

Clone Name bags8e04
Clone Library Name barley_pub
No. Definition Score
(bits)		 E
Value
1emb|Y07636.1|TAFKBP77 T.aestivum mRNA for peptidylprolyl isomerase 422 e-115
2ref|XM_472023.1| Oryza sativa (japonica cultivar-group), predic... 143 6e-31
3gb|AF140495.2| Oryza sativa (japonica cultivar-group) FK506-bind... 143 6e-31
4dbj|AK100844.1| Oryza sativa (japonica cultivar-group) cDNA clon... 143 6e-31
5emb|AL731624.3|OSJN00266 Oryza sativa genomic DNA, chromosome 4,... 101 2e-18
6dbj|AP008210.1| Oryza sativa (japonica cultivar-group) genomic D... 101 2e-18
7gb|AY104504.1| Zea mays PCO127462 mRNA sequence 76 1e-10
8ref|XM_483423.1| Oryza sativa (japonica cultivar-group), mRNA 56 1e-04
9dbj|AP008214.1| Oryza sativa (japonica cultivar-group) genomic D... 56 1e-04
10dbj|AP003888.4| Oryza sativa (japonica cultivar-group) genomic D... 56 1e-04
11dbj|AK103172.1| Oryza sativa (japonica cultivar-group) cDNA clon... 56 1e-04
12ref|NM_124233.2| Arabidopsis thaliana FK506 binding / calmodulin... 52 0.002
13emb|BX831626.1|CNS0A0YB Arabidopsis thaliana Full-length cDNA Co... 52 0.002
14dbj|AB015468.1| Arabidopsis thaliana genomic DNA, chromosome 5, ... 52 0.002
15gb|BT012788.1| Lycopersicon esculentum clone 113780F, mRNA sequence 46 0.10
16gb|AC132948.3| Mus musculus BAC clone RP24-467P6 from chromosome... 44 0.40
17gb|AC160937.1| Mus musculus BAC clone RP23-123M3 from chromosome... 44 0.40
18gb|AY389680.1| Hyacinthus orientalis peptidylprolyl isomerase (F... 42 1.6
19gb|AC091627.2| Solanum demissum chromosome 11 BAC PGEC513 genomi... 42 1.6
20emb|AL590423.14| Human DNA sequence from clone RP13-364K23 on ch... 42 1.6
21gb|CP000083.1| Colwellia psychrerythraea 34H, complete genome 42 1.6
22gb|AY112186.1| Zea mays CL38095_1 mRNA sequence 42 1.6
23ref|XM_465763.1| Oryza sativa (japonica cultivar-group), mRNA 40 6.2
24gb|AC108813.8| Mus musculus chromosome 1, clone RP23-320P13, com... 40 6.2
25ref|NM_019645.1| Mus musculus plakophilin 1 (Pkp1), mRNA 40 6.2
26gb|CP000250.1| Rhodopseudomonas palustris HaA2, complete genome 40 6.2
27dbj|AK079429.1| Mus musculus adult female vagina cDNA, RIKEN ful... 40 6.2
28dbj|AK036856.1| Mus musculus adult female vagina cDNA, RIKEN ful... 40 6.2
29dbj|BA000045.2| Gloeobacter violaceus PCC 7421 DNA, complete genome 40 6.2
30ref|XM_308355.2| Anopheles gambiae str. PEST ENSANGP00000009410 ... 40 6.2
31dbj|AK073233.1| Oryza sativa (japonica cultivar-group) cDNA clon... 40 6.2
32gb|AE016825.1| Chromobacterium violaceum ATCC 12472, complete ge... 40 6.2
33gb|AE000513.1| Deinococcus radiodurans R1 chromosome 1, complete... 40 6.2
34emb|Y07941.1|MMRP1 M.musculus mRNA for plakophilin 1 40 6.2 
>emb|Y07636.1|TAFKBP77 T.aestivum mRNA for peptidylprolyl isomerase
          Length = 1999

 Score =  422 bits (213), Expect = e-115
 Identities = 280/299 (93%), Gaps = 5/299 (1%)
 Strand = Plus / Plus

                                                                        
Query: 12   aaggttttggagctggagagcacgaacgtcaaggctctgtacaggagggcgcaggcgtac 71
            ||||||||||||||||||||||| |||||||||||||||||| |||||||||||||||||
Sbjct: 1498 aaggttttggagctggagagcacaaacgtcaaggctctgtaccggagggcgcaggcgtac 1557

                                                                        
Query: 72   acccaactcgtggatctggagctggcagtagctagatatcaagaaggctctggagatcga 131
            ||| | |||||||||||||| ||||||| | |||||||||||||||||||||||||||||
Sbjct: 1558 accgagctcgtggatctggaactggcagaa-ctagatatcaagaaggctctggagatcga 1616

                                                                        
Query: 132  tccagacaacagggtaggtcaaggttgcgtacaaggcgttgaaggacaagctgagggagt 191
             || |||||||||| |||| ||||||||||||||||||||||||||||||||||||||||
Sbjct: 1617 cccggacaacaggg-aggtgaaggttgcgtacaaggcgttgaaggacaagctgagggagt 1675

                                                                        
Query: 192  acaacaagagggacgccaagttctacggcaacatgttcgccaaatggaggaagacggaga 251
            ||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1676 acaacaagagggatgccaagttctacggcaacatgttcgccaaatggaggaagacggaga 1735

                                                                       
Query: 252  atgccgccgggaagcagcaggacgcacagcctatggccatcgacagcaccgcgtgacgg 310
            | ||||||||||   ||||||| || ||||||||||||| |||||||||||||||||||
Sbjct: 1736 acgccgccggga---agcaggaagcgcagcctatggccagcgacagcaccgcgtgacgg 1791
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>ref|XM_472023.1| Oryza sativa (japonica cultivar-group),  predicted mRNA
          Length = 1758

 Score =  143 bits (72), Expect = 6e-31
 Identities = 203/244 (83%), Gaps = 2/244 (0%)
 Strand = Plus / Plus

                                                                        
Query: 1    agctctgcaccaaggttttggagctggagagcacgaacgtcaaggctctgtacaggaggg 60
            |||||||||||||||||||||| ||||||||||| || || |||||  ||||||| ||| 
Sbjct: 1442 agctctgcaccaaggttttggaactggagagcacaaatgtaaaggccttgtacagaagga 1501

                                                                        
Query: 61   cgcaggcgtacacccaactcgtggatctggagctggcagtagctagatatcaagaaggct 120
            ||||||| ||||   | || |  |||||||| || |||| || | ||| ||||||| || 
Sbjct: 1502 cgcaggcatacattgagcttgctgatctggaactagcag-agttggatgtcaagaaagca 1560

                                                                        
Query: 121  ctggagatcgatccagacaacagggtaggtcaaggttgcgtacaaggcgttgaaggacaa 180
            |||||||| ||||| |||||||||| | || ||| | | ||| ||| | |||||||| ||
Sbjct: 1561 ctggagattgatcctgacaacaggg-atgtgaagatggtgtataagacattgaaggagaa 1619

                                                                        
Query: 181  gctgagggagtacaacaagagggacgccaagttctacggcaacatgttcgccaaatggag 240
            | | | ||||||||||||||| ||||||||||||||||||||||||||||| ||||||||
Sbjct: 1620 gatcaaggagtacaacaagagagacgccaagttctacggcaacatgttcgcgaaatggag 1679

                
Query: 241  gaag 244
            ||||
Sbjct: 1680 gaag 1683



 Score = 46.1 bits (23), Expect = 0.10
 Identities = 29/31 (93%)
 Strand = Plus / Plus

                                           
Query: 267  agcaggacgcacagcctatggccatcgacag 297
            ||||||| ||||||||||||||||| |||||
Sbjct: 1718 agcaggaggcacagcctatggccattgacag 1748
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>gb|AF140495.2| Oryza sativa (japonica cultivar-group) FK506-binding protein mRNA,
            complete cds
          Length = 2233

 Score =  143 bits (72), Expect = 6e-31
 Identities = 203/244 (83%), Gaps = 2/244 (0%)
 Strand = Plus / Plus

                                                                        
Query: 1    agctctgcaccaaggttttggagctggagagcacgaacgtcaaggctctgtacaggaggg 60
            |||||||||||||||||||||| ||||||||||| || || |||||  ||||||| ||| 
Sbjct: 1525 agctctgcaccaaggttttggaactggagagcacaaatgtaaaggccttgtacagaagga 1584

                                                                        
Query: 61   cgcaggcgtacacccaactcgtggatctggagctggcagtagctagatatcaagaaggct 120
            ||||||| ||||   | || |  |||||||| || |||| || | ||| ||||||| || 
Sbjct: 1585 cgcaggcatacattgagcttgctgatctggaactagcag-agttggatgtcaagaaagca 1643

                                                                        
Query: 121  ctggagatcgatccagacaacagggtaggtcaaggttgcgtacaaggcgttgaaggacaa 180
            |||||||| ||||| |||||||||| | || ||| | | ||| ||| | |||||||| ||
Sbjct: 1644 ctggagattgatcctgacaacaggg-atgtgaagatggtgtataagacattgaaggagaa 1702

                                                                        
Query: 181  gctgagggagtacaacaagagggacgccaagttctacggcaacatgttcgccaaatggag 240
            | | | ||||||||||||||| ||||||||||||||||||||||||||||| ||||||||
Sbjct: 1703 gatcaaggagtacaacaagagagacgccaagttctacggcaacatgttcgcgaaatggag 1762

                
Query: 241  gaag 244
            ||||
Sbjct: 1763 gaag 1766



 Score = 46.1 bits (23), Expect = 0.10
 Identities = 29/31 (93%)
 Strand = Plus / Plus

                                           
Query: 267  agcaggacgcacagcctatggccatcgacag 297
            ||||||| ||||||||||||||||| |||||
Sbjct: 1801 agcaggaggcacagcctatggccattgacag 1831
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>dbj|AK100844.1| Oryza sativa (japonica cultivar-group) cDNA clone:J023123G09, full
            insert sequence
          Length = 2162

 Score =  143 bits (72), Expect = 6e-31
 Identities = 203/244 (83%), Gaps = 2/244 (0%)
 Strand = Plus / Plus

                                                                        
Query: 1    agctctgcaccaaggttttggagctggagagcacgaacgtcaaggctctgtacaggaggg 60
            |||||||||||||||||||||| ||||||||||| || || |||||  ||||||| ||| 
Sbjct: 1528 agctctgcaccaaggttttggaactggagagcacaaatgtaaaggccttgtacagaagga 1587

                                                                        
Query: 61   cgcaggcgtacacccaactcgtggatctggagctggcagtagctagatatcaagaaggct 120
            ||||||| ||||   | || |  |||||||| || |||| || | ||| ||||||| || 
Sbjct: 1588 cgcaggcatacattgagcttgctgatctggaactagcag-agttggatgtcaagaaagca 1646

                                                                        
Query: 121  ctggagatcgatccagacaacagggtaggtcaaggttgcgtacaaggcgttgaaggacaa 180
            |||||||| ||||| |||||||||| | || ||| | | ||| ||| | |||||||| ||
Sbjct: 1647 ctggagattgatcctgacaacaggg-atgtgaagatggtgtataagacattgaaggagaa 1705

                                                                        
Query: 181  gctgagggagtacaacaagagggacgccaagttctacggcaacatgttcgccaaatggag 240
            | | | ||||||||||||||| ||||||||||||||||||||||||||||| ||||||||
Sbjct: 1706 gatcaaggagtacaacaagagagacgccaagttctacggcaacatgttcgcgaaatggag 1765

                
Query: 241  gaag 244
            ||||
Sbjct: 1766 gaag 1769



 Score = 46.1 bits (23), Expect = 0.10
 Identities = 29/31 (93%)
 Strand = Plus / Plus

                                           
Query: 267  agcaggacgcacagcctatggccatcgacag 297
            ||||||| ||||||||||||||||| |||||
Sbjct: 1804 agcaggaggcacagcctatggccattgacag 1834
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>emb|AL731624.3|OSJN00266 Oryza sativa genomic DNA, chromosome 4, BAC clone: OSJNBa0091C07,
             complete sequence
          Length = 138383

 Score =  101 bits (51), Expect = 2e-18
 Identities = 69/75 (92%)
 Strand = Plus / Minus

                                                                         
Query: 170   ttgaaggacaagctgagggagtacaacaagagggacgccaagttctacggcaacatgttc 229
             |||||||| ||| | | ||||||||||||||| |||||||||||||||||||||||||||
Sbjct: 75071 ttgaaggagaagatcaaggagtacaacaagagagacgccaagttctacggcaacatgttc 75012

                            
Query: 230   gccaaatggaggaag 244
             || ||||||||||||
Sbjct: 75011 gcgaaatggaggaag 74997



 Score = 48.1 bits (24), Expect = 0.026
 Identities = 51/60 (85%)
 Strand = Plus / Minus

                                                                         
Query: 13    aggttttggagctggagagcacgaacgtcaaggctctgtacaggagggcgcaggcgtaca 72
             |||||||||| ||||||||||| || || |||||  ||||||| ||| ||||||| ||||
Sbjct: 75308 aggttttggaactggagagcacaaatgtaaaggccttgtacagaaggacgcaggcataca 75249



 Score = 46.1 bits (23), Expect = 0.10
 Identities = 29/31 (93%)
 Strand = Plus / Minus

                                            
Query: 267   agcaggacgcacagcctatggccatcgacag 297
             ||||||| ||||||||||||||||| |||||
Sbjct: 74865 agcaggaggcacagcctatggccattgacag 74835
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>dbj|AP008210.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 4, complete
                sequence
          Length = 35498469

 Score =  101 bits (51), Expect = 2e-18
 Identities = 69/75 (92%)
 Strand = Plus / Minus

                                                                            
Query: 170      ttgaaggacaagctgagggagtacaacaagagggacgccaagttctacggcaacatgttc 229
                |||||||| ||| | | ||||||||||||||| |||||||||||||||||||||||||||
Sbjct: 16824640 ttgaaggagaagatcaaggagtacaacaagagagacgccaagttctacggcaacatgttc 16824581

                               
Query: 230      gccaaatggaggaag 244
                || ||||||||||||
Sbjct: 16824580 gcgaaatggaggaag 16824566



 Score = 48.1 bits (24), Expect = 0.026
 Identities = 51/60 (85%)
 Strand = Plus / Minus

                                                                            
Query: 13       aggttttggagctggagagcacgaacgtcaaggctctgtacaggagggcgcaggcgtaca 72
                |||||||||| ||||||||||| || || |||||  ||||||| ||| ||||||| ||||
Sbjct: 16824877 aggttttggaactggagagcacaaatgtaaaggccttgtacagaaggacgcaggcataca 16824818



 Score = 46.1 bits (23), Expect = 0.10
 Identities = 29/31 (93%)
 Strand = Plus / Minus

                                               
Query: 267      agcaggacgcacagcctatggccatcgacag 297
                ||||||| ||||||||||||||||| |||||
Sbjct: 16824434 agcaggaggcacagcctatggccattgacag 16824404
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>gb|AY104504.1| Zea mays PCO127462 mRNA sequence
          Length = 2108

 Score = 75.8 bits (38), Expect = 1e-10
 Identities = 187/234 (79%), Gaps = 2/234 (0%)
 Strand = Plus / Plus

                                                                        
Query: 1    agctctgcaccaaggttttggagctggagagcacgaacgtcaaggctctgtacaggaggg 60
            |||| |||||||||||| |||| || || |||   || ||||||||||| ||||||||||
Sbjct: 1561 agctttgcaccaaggttctggaactagacagccaaaatgtcaaggctctctacaggaggg 1620

                                                                        
Query: 61   cgcaggcgtacacccaactcgtggatctggagctggcagtagctagatatcaagaaggct 120
             ||| || ||||  ||||| |  || || ||||| ||||  ||  |||||||| ||||| 
Sbjct: 1621 tgcaagcttacattcaacttgctgacctagagctagcagaggcc-gatatcaaaaaggca 1679

                                                                        
Query: 121  ctggagatcgatccagacaacagggtaggtcaaggttgcgtacaaggcgttgaaggacaa 180
            ||||| |||||||| |||||||||| | |||||| | |  || |||    ||||||| ||
Sbjct: 1680 ctggaaatcgatcctgacaacaggg-atgtcaagttggaatataagatcctgaaggagaa 1738

                                                                  
Query: 181  gctgagggagtacaacaagagggacgccaagttctacggcaacatgttcgccaa 234
            | | | |||||||||||||| ||||||||| |||||| ||||||||||||||||
Sbjct: 1739 gatcaaggagtacaacaagaaggacgccaaattctacagcaacatgttcgccaa 1792
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>ref|XM_483423.1| Oryza sativa (japonica cultivar-group),  mRNA
          Length = 2100

 Score = 56.0 bits (28), Expect = 1e-04
 Identities = 43/48 (89%)
 Strand = Plus / Plus

                                                            
Query: 187  ggagtacaacaagagggacgccaagttctacggcaacatgttcgccaa 234
            |||||||||||||| ||| ||||| |||||| |||| |||||||||||
Sbjct: 1718 ggagtacaacaagaaggatgccaaattctacagcaatatgttcgccaa 1765
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>dbj|AP008214.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 8, complete
                sequence
          Length = 28434780

 Score = 56.0 bits (28), Expect = 1e-04
 Identities = 43/48 (89%)
 Strand = Plus / Plus

                                                                
Query: 187      ggagtacaacaagagggacgccaagttctacggcaacatgttcgccaa 234
                |||||||||||||| ||| ||||| |||||| |||| |||||||||||
Sbjct: 26135289 ggagtacaacaagaaggatgccaaattctacagcaatatgttcgccaa 26135336
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>dbj|AP003888.4| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 8, BAC
             clone:OJ1191_A10
          Length = 140643

 Score = 56.0 bits (28), Expect = 1e-04
 Identities = 43/48 (89%)
 Strand = Plus / Plus

                                                             
Query: 187   ggagtacaacaagagggacgccaagttctacggcaacatgttcgccaa 234
             |||||||||||||| ||| ||||| |||||| |||| |||||||||||
Sbjct: 79220 ggagtacaacaagaaggatgccaaattctacagcaatatgttcgccaa 79267
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>dbj|AK103172.1| Oryza sativa (japonica cultivar-group) cDNA clone:J033121G16, full
            insert sequence
          Length = 2100

 Score = 56.0 bits (28), Expect = 1e-04
 Identities = 43/48 (89%)
 Strand = Plus / Plus

                                                            
Query: 187  ggagtacaacaagagggacgccaagttctacggcaacatgttcgccaa 234
            |||||||||||||| ||| ||||| |||||| |||| |||||||||||
Sbjct: 1718 ggagtacaacaagaaggatgccaaattctacagcaatatgttcgccaa 1765
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>ref|NM_124233.2| Arabidopsis thaliana FK506 binding / calmodulin binding /
            peptidyl-prolyl cis-trans isomerase AT5G48570 mRNA,
            complete cds
          Length = 2130

 Score = 52.0 bits (26), Expect = 0.002
 Identities = 38/42 (90%)
 Strand = Plus / Plus

                                                      
Query: 101  agctagatatcaagaaggctctggagatcgatccagacaaca 142
            |||| ||||||||||| ||||| || ||||||||||||||||
Sbjct: 1727 agcttgatatcaagaaagctctcgaaatcgatccagacaaca 1768
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>emb|BX831626.1|CNS0A0YB Arabidopsis thaliana Full-length cDNA Complete sequence from clone
            GSLTPGH1ZC07 of Hormone Treated Callus of strain col-0 of
            Arabidopsis thaliana (thale cress)
          Length = 1890

 Score = 52.0 bits (26), Expect = 0.002
 Identities = 38/42 (90%)
 Strand = Plus / Plus

                                                      
Query: 101  agctagatatcaagaaggctctggagatcgatccagacaaca 142
            |||| ||||||||||| ||||| || ||||||||||||||||
Sbjct: 1599 agcttgatatcaagaaagctctcgaaatcgatccagacaaca 1640
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>dbj|AB015468.1| Arabidopsis thaliana genomic DNA, chromosome 5, TAC clone:K15N18
          Length = 66084

 Score = 52.0 bits (26), Expect = 0.002
 Identities = 38/42 (90%)
 Strand = Plus / Minus

                                                       
Query: 101   agctagatatcaagaaggctctggagatcgatccagacaaca 142
             |||| ||||||||||| ||||| || ||||||||||||||||
Sbjct: 12238 agcttgatatcaagaaagctctcgaaatcgatccagacaaca 12197
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>gb|BT012788.1| Lycopersicon esculentum clone 113780F, mRNA sequence
          Length = 2264

 Score = 46.1 bits (23), Expect = 0.10
 Identities = 32/35 (91%)
 Strand = Plus / Plus

                                               
Query: 194  aacaagagggacgccaagttctacggcaacatgtt 228
            ||||||| |||||| ||||||||||| ||||||||
Sbjct: 1812 aacaagaaggacgcaaagttctacgggaacatgtt 1846
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>gb|AC132948.3| Mus musculus BAC clone RP24-467P6 from chromosome 8, complete sequence
          Length = 166801

 Score = 44.1 bits (22), Expect = 0.40
 Identities = 22/22 (100%)
 Strand = Plus / Plus

                                    
Query: 110    tcaagaaggctctggagatcga 131
              ||||||||||||||||||||||
Sbjct: 103586 tcaagaaggctctggagatcga 103607
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>gb|AC160937.1| Mus musculus BAC clone RP23-123M3 from chromosome 8, complete sequence
          Length = 212654

 Score = 44.1 bits (22), Expect = 0.40
 Identities = 22/22 (100%)
 Strand = Plus / Plus

                                    
Query: 110    tcaagaaggctctggagatcga 131
              ||||||||||||||||||||||
Sbjct: 167544 tcaagaaggctctggagatcga 167565
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>gb|AY389680.1| Hyacinthus orientalis peptidylprolyl isomerase (FKBP) mRNA, partial
           cds
          Length = 527

 Score = 42.1 bits (21), Expect = 1.6
 Identities = 39/45 (86%)
 Strand = Plus / Plus

                                                        
Query: 101 agctagatatcaagaaggctctggagatcgatccagacaacaggg 145
           |||| ||||||||||| || || ||||| ||||| ||||||||||
Sbjct: 91  agctcgatatcaagaaagccctcgagattgatcctgacaacaggg 135
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>gb|AC091627.2| Solanum demissum chromosome 11 BAC PGEC513 genomic sequence, complete
             sequence
          Length = 77821

 Score = 42.1 bits (21), Expect = 1.6
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                     
Query: 402   tctgctgctnctgcttgtggtgcc 425
             ||||||||| ||||||||||||||
Sbjct: 74056 tctgctgctgctgcttgtggtgcc 74033
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>emb|AL590423.14| Human DNA sequence from clone RP13-364K23 on chromosome Xq22.1-23
            Contains the DSIPI gene for delta sleep inducing peptide,
            immunoreactor (DIP, GILZ, TSC-22R), the 5' end of a novel
            gene and two CpG islands, complete sequence
          Length = 83167

 Score = 42.1 bits (21), Expect = 1.6
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                 
Query: 112  aagaaggctctggagatcgat 132
            |||||||||||||||||||||
Sbjct: 6716 aagaaggctctggagatcgat 6736
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>gb|CP000083.1| Colwellia psychrerythraea 34H, complete genome
          Length = 5373180

 Score = 42.1 bits (21), Expect = 1.6
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                    
Query: 204     acgccaagttctacggcaaca 224
               |||||||||||||||||||||
Sbjct: 4829484 acgccaagttctacggcaaca 4829504
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>gb|AY112186.1| Zea mays CL38095_1 mRNA sequence
          Length = 578

 Score = 42.1 bits (21), Expect = 1.6
 Identities = 36/41 (87%)
 Strand = Plus / Minus

                                                    
Query: 105 agatatcaagaaggctctggagatcgatccagacaacaggg 145
           |||||||||||| ||||| || || ||||| ||||||||||
Sbjct: 547 agatatcaagaaagctctagaaatagatcctgacaacaggg 507
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>ref|XM_465763.1| Oryza sativa (japonica cultivar-group),  mRNA
          Length = 2341

 Score = 40.1 bits (20), Expect = 6.2
 Identities = 35/40 (87%)
 Strand = Plus / Plus

                                                    
Query: 106  gatatcaagaaggctctggagatcgatccagacaacaggg 145
            ||||||||||| || || || || ||||||||||||||||
Sbjct: 1748 gatatcaagaaagcactagaaatagatccagacaacaggg 1787
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>gb|AC108813.8| Mus musculus chromosome 1, clone RP23-320P13, complete sequence
          Length = 198759

 Score = 40.1 bits (20), Expect = 6.2
 Identities = 25/27 (92%)
 Strand = Plus / Plus

                                        
Query: 405   gctgctnctgcttgtggtgccgtagtt 431
             |||||| ||||| ||||||||||||||
Sbjct: 73211 gctgcttctgctcgtggtgccgtagtt 73237
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>ref|NM_019645.1| Mus musculus plakophilin 1 (Pkp1), mRNA
          Length = 4504

 Score = 40.1 bits (20), Expect = 6.2
 Identities = 25/27 (92%)
 Strand = Plus / Minus

                                      
Query: 405 gctgctnctgcttgtggtgccgtagtt 431
           |||||| ||||| ||||||||||||||
Sbjct: 276 gctgcttctgctcgtggtgccgtagtt 250
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>gb|CP000250.1| Rhodopseudomonas palustris HaA2, complete genome
          Length = 5331656

 Score = 40.1 bits (20), Expect = 6.2
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                   
Query: 303     cgtgacggcgctgcagcgtc 322
               ||||||||||||||||||||
Sbjct: 4323757 cgtgacggcgctgcagcgtc 4323738
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>dbj|AK079429.1| Mus musculus adult female vagina cDNA, RIKEN full-length enriched
           library, clone:9930003C20 product:plakophilin 1, full
           insert sequence
          Length = 3578

 Score = 40.1 bits (20), Expect = 6.2
 Identities = 25/27 (92%)
 Strand = Plus / Minus

                                      
Query: 405 gctgctnctgcttgtggtgccgtagtt 431
           |||||| ||||| ||||||||||||||
Sbjct: 460 gctgcttctgctcgtggtgccgtagtt 434
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>dbj|AK036856.1| Mus musculus adult female vagina cDNA, RIKEN full-length enriched
           library, clone:9930018O04 product:plakophilin 1, full
           insert sequence
          Length = 3983

 Score = 40.1 bits (20), Expect = 6.2
 Identities = 25/27 (92%)
 Strand = Plus / Minus

                                      
Query: 405 gctgctnctgcttgtggtgccgtagtt 431
           |||||| ||||| ||||||||||||||
Sbjct: 460 gctgcttctgctcgtggtgccgtagtt 434
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>dbj|BA000045.2| Gloeobacter violaceus PCC 7421 DNA, complete genome
          Length = 4659019

 Score = 40.1 bits (20), Expect = 6.2
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                      
Query: 116    aggctctggagatcgatccagaca 139
              |||||||||| |||||||||||||
Sbjct: 556787 aggctctggaaatcgatccagaca 556810
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>ref|XM_308355.2| Anopheles gambiae str. PEST ENSANGP00000009410 (ENSANGG00000007043),
            partial mRNA
          Length = 6425

 Score = 40.1 bits (20), Expect = 6.2
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                    
Query: 7    gcaccaaggttttggagctggaga 30
            |||||||||| |||||||||||||
Sbjct: 4472 gcaccaaggtgttggagctggaga 4495
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>dbj|AK073233.1| Oryza sativa (japonica cultivar-group) cDNA clone:J033023H01, full
            insert sequence
          Length = 2341

 Score = 40.1 bits (20), Expect = 6.2
 Identities = 35/40 (87%)
 Strand = Plus / Plus

                                                    
Query: 106  gatatcaagaaggctctggagatcgatccagacaacaggg 145
            ||||||||||| || || || || ||||||||||||||||
Sbjct: 1748 gatatcaagaaagcactagaaatagatccagacaacaggg 1787
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>gb|AE016825.1| Chromobacterium violaceum ATCC 12472, complete genome
          Length = 4751080

 Score = 40.1 bits (20), Expect = 6.2
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                   
Query: 77      actcgtggatctggagctgg 96
               ||||||||||||||||||||
Sbjct: 4219672 actcgtggatctggagctgg 4219653
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>gb|AE000513.1| Deinococcus radiodurans R1 chromosome 1, complete sequence
          Length = 2648638

 Score = 40.1 bits (20), Expect = 6.2
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                   
Query: 253     tgccgccgggaagcagcagg 272
               ||||||||||||||||||||
Sbjct: 1208394 tgccgccgggaagcagcagg 1208413
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>emb|Y07941.1|MMRP1 M.musculus mRNA for plakophilin 1
          Length = 4504

 Score = 40.1 bits (20), Expect = 6.2
 Identities = 25/27 (92%)
 Strand = Plus / Minus

                                      
Query: 405 gctgctnctgcttgtggtgccgtagtt 431
           |||||| ||||| ||||||||||||||
Sbjct: 276 gctgcttctgctcgtggtgccgtagtt 250


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 2,620,672
Number of Sequences: 3902068
Number of extensions: 2620672
Number of successful extensions: 54127
Number of sequences better than 10.0: 34
Number of HSP's better than 10.0 without gapping: 34
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 53916
Number of HSP's gapped (non-prelim): 205
length of query: 462
length of database: 17,233,045,268
effective HSP length: 22
effective length of query: 440
effective length of database: 17,147,199,772
effective search space: 7544767899680
effective search space used: 7544767899680
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)
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