| Clone Name | bags7o23 |
|---|---|
| Clone Library Name | barley_pub |
>ref|NM_192312.1| Oryza sativa (japonica cultivar-group), predicted mRNA Length = 1227 Score = 694 bits (350), Expect = 0.0 Identities = 500/550 (90%) Strand = Plus / Plus Query: 15 agctaacatttctagtaacctgccagcgagcgggcctactggagcaagccagtacgagaa 74 ||||||||| || ||||| ||||||| |||| |||| || ||||| |||||||||||| Sbjct: 222 agctaacatatccagtaatctgccagagagcattcctagtgaagcaaaccagtacgagaa 281 Query: 75 aatagttgagctactcaccactcttttccctgtctgggtcatattaggtacagttattgg 134 |||||||||||| || ||||||||||||||||||||||||||||||||||| ||||||| Sbjct: 282 aatagttgagctgcttaccactcttttccctgtctgggtcatattaggtaccattattgg 341 Query: 135 catctacaagccgtcaatggtcacctggttggagactgatctttttactctgggcctagg 194 |||||||||||| || ||||| ||||||||||||||||||||||| ||| |||||||||| Sbjct: 342 catctacaagccatcgatggttacctggttggagactgatcttttcactgtgggcctagg 401 Query: 195 attcctaatgctgtcaatgggactaacattgacatttgaagatttcaggagatgtttaag 254 |||||||||||| |||||||||||||||||||| || ||||||||||||||||| | || Sbjct: 402 attcctaatgctatcaatgggactaacattgaccttcgaagatttcaggagatgcatgag 461 Query: 255 gaatccatggacagttggtgtgggatttcttgcgcaatatttgatcaaacctatgctagg 314 |||||||||||| || |||||||||||||||||||| |||||||||||||||||||| || Sbjct: 462 gaatccatggactgtgggtgtgggatttcttgcgcagtatttgatcaaacctatgctggg 521 Query: 315 atatgctatcgcattgacattgaagttatctgctcctcttgcaactggtcttattttggt 374 || |||||| || |||| |||||||||||||||||||||||||||||||||||||| || Sbjct: 522 atttgctattgccatgaccttgaagttatctgctcctcttgcaactggtcttattttagt 581 Query: 375 ctcatgttgtcctggtggtcaagcatcaaatgttgcaacttacatatccaaaggaaatgt 434 |||||||| |||||||| ||||||||||||||||| ||||| ||||||||||||||||| Sbjct: 582 gtcatgttgccctggtggacaagcatcaaatgttgctacttatatatccaaaggaaatgt 641 Query: 435 ggcactttcagttcttatgaccacttgctcgactattggtgctatagcgatgacaccact 494 |||||||||||||||||||| ||||| ||||||||||||||||||| |||||||||||| Sbjct: 642 cgcactttcagttcttatgacaacttgttcgactattggtgctatagtgatgacaccact 701 Query: 495 ccttactaaactccttgctggtcaattagtccctgttgatgctgcaggcttggccatcag 554 ||||||||||||||| ||||||||| | || ||||| ||||||||||| ||||||||||| Sbjct: 702 ccttactaaactcctagctggtcaactggttcctgtcgatgctgcaggattggccatcag 761 Query: 555 tacttttcag 564 |||||||||| Sbjct: 762 tacttttcag 771
>dbj|AK069337.1| Oryza sativa (japonica cultivar-group) cDNA clone:J023014F07, full insert sequence Length = 1887 Score = 694 bits (350), Expect = 0.0 Identities = 500/550 (90%) Strand = Plus / Plus Query: 15 agctaacatttctagtaacctgccagcgagcgggcctactggagcaagccagtacgagaa 74 ||||||||| || ||||| ||||||| |||| |||| || ||||| |||||||||||| Sbjct: 553 agctaacatatccagtaatctgccagagagcattcctagtgaagcaaaccagtacgagaa 612 Query: 75 aatagttgagctactcaccactcttttccctgtctgggtcatattaggtacagttattgg 134 |||||||||||| || ||||||||||||||||||||||||||||||||||| ||||||| Sbjct: 613 aatagttgagctgcttaccactcttttccctgtctgggtcatattaggtaccattattgg 672 Query: 135 catctacaagccgtcaatggtcacctggttggagactgatctttttactctgggcctagg 194 |||||||||||| || ||||| ||||||||||||||||||||||| ||| |||||||||| Sbjct: 673 catctacaagccatcgatggttacctggttggagactgatcttttcactgtgggcctagg 732 Query: 195 attcctaatgctgtcaatgggactaacattgacatttgaagatttcaggagatgtttaag 254 |||||||||||| |||||||||||||||||||| || ||||||||||||||||| | || Sbjct: 733 attcctaatgctatcaatgggactaacattgaccttcgaagatttcaggagatgcatgag 792 Query: 255 gaatccatggacagttggtgtgggatttcttgcgcaatatttgatcaaacctatgctagg 314 |||||||||||| || |||||||||||||||||||| |||||||||||||||||||| || Sbjct: 793 gaatccatggactgtgggtgtgggatttcttgcgcagtatttgatcaaacctatgctggg 852 Query: 315 atatgctatcgcattgacattgaagttatctgctcctcttgcaactggtcttattttggt 374 || |||||| || |||| |||||||||||||||||||||||||||||||||||||| || Sbjct: 853 atttgctattgccatgaccttgaagttatctgctcctcttgcaactggtcttattttagt 912 Query: 375 ctcatgttgtcctggtggtcaagcatcaaatgttgcaacttacatatccaaaggaaatgt 434 |||||||| |||||||| ||||||||||||||||| ||||| ||||||||||||||||| Sbjct: 913 gtcatgttgccctggtggacaagcatcaaatgttgctacttatatatccaaaggaaatgt 972 Query: 435 ggcactttcagttcttatgaccacttgctcgactattggtgctatagcgatgacaccact 494 |||||||||||||||||||| ||||| ||||||||||||||||||| |||||||||||| Sbjct: 973 cgcactttcagttcttatgacaacttgttcgactattggtgctatagtgatgacaccact 1032 Query: 495 ccttactaaactccttgctggtcaattagtccctgttgatgctgcaggcttggccatcag 554 ||||||||||||||| ||||||||| | || ||||| ||||||||||| ||||||||||| Sbjct: 1033 ccttactaaactcctagctggtcaactggttcctgtcgatgctgcaggattggccatcag 1092 Query: 555 tacttttcag 564 |||||||||| Sbjct: 1093 tacttttcag 1102
>dbj|AK104932.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-047-B10, full insert sequence Length = 1616 Score = 686 bits (346), Expect = 0.0 Identities = 499/550 (90%) Strand = Plus / Plus Query: 15 agctaacatttctagtaacctgccagcgagcgggcctactggagcaagccagtacgagaa 74 ||||| ||| || ||||| ||||||| |||| |||| || ||||| |||||||||||| Sbjct: 309 agctagcatatccagtaatctgccagagagcattcctagtgaagcaaaccagtacgagaa 368 Query: 75 aatagttgagctactcaccactcttttccctgtctgggtcatattaggtacagttattgg 134 |||||||||||| || ||||||||||||||||||||||||||||||||||| ||||||| Sbjct: 369 aatagttgagctgcttaccactcttttccctgtctgggtcatattaggtaccattattgg 428 Query: 135 catctacaagccgtcaatggtcacctggttggagactgatctttttactctgggcctagg 194 |||||||||||| || ||||| ||||||||||||||||||||||| ||| |||||||||| Sbjct: 429 catctacaagccatcgatggttacctggttggagactgatcttttcactgtgggcctagg 488 Query: 195 attcctaatgctgtcaatgggactaacattgacatttgaagatttcaggagatgtttaag 254 |||||||||||| |||||||||||||||||||| || ||||||||||||||||| | || Sbjct: 489 attcctaatgctatcaatgggactaacattgaccttcgaagatttcaggagatgcatgag 548 Query: 255 gaatccatggacagttggtgtgggatttcttgcgcaatatttgatcaaacctatgctagg 314 |||||||||||| || |||||||||||||||||||| |||||||||||||||||||| || Sbjct: 549 gaatccatggactgtgggtgtgggatttcttgcgcagtatttgatcaaacctatgctggg 608 Query: 315 atatgctatcgcattgacattgaagttatctgctcctcttgcaactggtcttattttggt 374 || |||||| || |||| |||||||||||||||||||||||||||||||||||||| || Sbjct: 609 atttgctattgccatgaccttgaagttatctgctcctcttgcaactggtcttattttagt 668 Query: 375 ctcatgttgtcctggtggtcaagcatcaaatgttgcaacttacatatccaaaggaaatgt 434 |||||||| |||||||| ||||||||||||||||| ||||| ||||||||||||||||| Sbjct: 669 gtcatgttgccctggtggacaagcatcaaatgttgctacttatatatccaaaggaaatgt 728 Query: 435 ggcactttcagttcttatgaccacttgctcgactattggtgctatagcgatgacaccact 494 |||||||||||||||||||| ||||| ||||||||||||||||||| |||||||||||| Sbjct: 729 cgcactttcagttcttatgacaacttgttcgactattggtgctatagtgatgacaccact 788 Query: 495 ccttactaaactccttgctggtcaattagtccctgttgatgctgcaggcttggccatcag 554 ||||||||||||||| ||||||||| | || ||||| ||||||||||| ||||||||||| Sbjct: 789 ccttactaaactcctagctggtcaactggttcctgtcgatgctgcaggattggccatcag 848 Query: 555 tacttttcag 564 |||||||||| Sbjct: 849 tacttttcag 858
>gb|AY581831.1| Cynodon dactylon unknown mRNA Length = 660 Score = 488 bits (246), Expect = e-134 Identities = 435/498 (87%) Strand = Plus / Plus Query: 60 aagccagtacgagaaaatagttgagctactcaccactcttttccctgtctgggtcatatt 119 ||||||||| |||||| |||||||||| || ||||||||||||||||||||||||||| | Sbjct: 109 aagccagtatgagaaagtagttgagctgcttaccactcttttccctgtctgggtcatact 168 Query: 120 aggtacagttattggcatctacaagccgtcaatggtcacctggttggagactgatctttt 179 |||||| ||||||||||||||||||| |||||||| ||||||||||| || || ||||| Sbjct: 169 gggtacaattattggcatctacaagccatcaatggttacctggttggaaaccgacctttt 228 Query: 180 tactctgggcctaggattcctaatgctgtcaatgggactaacattgacatttgaagattt 239 ||||| ||| |||| ||||||||| |||| ||||||||||| ||||||||||| ||||| Sbjct: 229 cactcttggcttaggcttcctaatgttgtcgatgggactaactttgacatttgatgattt 288 Query: 240 caggagatgtttaaggaatccatggacagttggtgtgggatttcttgcgcaatatttgat 299 | ||||||||| || |||||||||||||| |||||||||||| | || || |||||||| Sbjct: 289 taagagatgtttgagaaatccatggacagtgggtgtgggatttgtcgcacagtatttgat 348 Query: 300 caaacctatgctaggatatgctatcgcattgacattgaagttatctgctcctcttgcaac 359 ||||||| || | |||| |||||| ||| || |||| |||||||||||||| ||||| Sbjct: 349 caaacctttgttgggatttgctattgcaacgagcctgaacttatctgctcctctcgcaac 408 Query: 360 tggtcttattttggtctcatgttgtcctggtggtcaagcatcaaatgttgcaacttacat 419 ||||||| |||||||||||||||| |||||||| |||||||| ||||||||||||||||| Sbjct: 409 tggtcttgttttggtctcatgttgccctggtgggcaagcatccaatgttgcaacttacat 468 Query: 420 atccaaaggaaatgtggcactttcagttcttatgaccacttgctcgactattggtgctat 479 |||||| |||||||| |||||||| ||||| ||||||||||| ||||||||||||||||| Sbjct: 469 atccaagggaaatgttgcactttcggttctcatgaccacttgttcgactattggtgctat 528 Query: 480 agcgatgacaccactccttactaaactccttgctggtcaattagtccctgttgatgctgc 539 | |||||| || |||||||||||| ||||||||||||| |||| ||||| ||||| | Sbjct: 529 cgtgatgacgccgctccttactaaaatccttgctggtcagctagtacctgtagatgcagt 588 Query: 540 aggcttggccatcagtac 557 ||| |||||||| ||||| Sbjct: 589 aggattggccatgagtac 606
>dbj|AP008207.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, complete sequence Length = 43261740 Score = 186 bits (94), Expect = 5e-44 Identities = 115/122 (94%) Strand = Plus / Plus Query: 334 ttgaagttatctgctcctcttgcaactggtcttattttggtctcatgttgtcctggtggt 393 |||||||||||||||||||||||||||||||||||||| || |||||||| |||||||| Sbjct: 25970744 ttgaagttatctgctcctcttgcaactggtcttattttagtgtcatgttgccctggtgga 25970803 Query: 394 caagcatcaaatgttgcaacttacatatccaaaggaaatgtggcactttcagttcttatg 453 ||||||||||||||||| ||||| ||||||||||||||||| |||||||||||||||||| Sbjct: 25970804 caagcatcaaatgttgctacttatatatccaaaggaaatgtcgcactttcagttcttatg 25970863 Query: 454 ac 455 || Sbjct: 25970864 ac 25970865 Score = 155 bits (78), Expect = 2e-34 Identities = 102/110 (92%) Strand = Plus / Plus Query: 157 acctggttggagactgatctttttactctgggcctaggattcctaatgctgtcaatggga 216 ||||||||||||||||||||||| ||| |||||||||||||||||||||| ||||||||| Sbjct: 25969625 acctggttggagactgatcttttcactgtgggcctaggattcctaatgctatcaatggga 25969684 Query: 217 ctaacattgacatttgaagatttcaggagatgtttaaggaatccatggac 266 ||||||||||| || ||||||||||||||||| | |||||||||||||| Sbjct: 25969685 ctaacattgaccttcgaagatttcaggagatgcatgaggaatccatggac 25969734 Score = 109 bits (55), Expect = 1e-20 Identities = 73/79 (92%) Strand = Plus / Plus Query: 463 tcgactattggtgctatagcgatgacaccactccttactaaactccttgctggtcaatta 522 ||||||||||||||||||| ||||||||||||||||||||||||||| ||||||||| | Sbjct: 25972202 tcgactattggtgctatagtgatgacaccactccttactaaactcctagctggtcaactg 25972261 Query: 523 gtccctgttgatgctgcag 541 || ||||| |||||||||| Sbjct: 25972262 gttcctgtcgatgctgcag 25972280 Score = 101 bits (51), Expect = 2e-18 Identities = 87/99 (87%) Strand = Plus / Plus Query: 15 agctaacatttctagtaacctgccagcgagcgggcctactggagcaagccagtacgagaa 74 ||||||||| || ||||| ||||||| |||| |||| || ||||| |||||||||||| Sbjct: 25969265 agctaacatatccagtaatctgccagagagcattcctagtgaagcaaaccagtacgagaa 25969324 Query: 75 aatagttgagctactcaccactcttttccctgtctgggt 113 |||||||||||| || ||||||||||||||||||||||| Sbjct: 25969325 aatagttgagctgcttaccactcttttccctgtctgggt 25969363 Score = 81.8 bits (41), Expect = 2e-12 Identities = 50/53 (94%) Strand = Plus / Plus Query: 271 ggtgtgggatttcttgcgcaatatttgatcaaacctatgctaggatatgctat 323 |||||||||||||||||||| |||||||||||||||||||| |||| |||||| Sbjct: 25969846 ggtgtgggatttcttgcgcagtatttgatcaaacctatgctgggatttgctat 25969898 Score = 58.0 bits (29), Expect = 3e-05 Identities = 41/45 (91%) Strand = Plus / Plus Query: 111 ggtcatattaggtacagttattggcatctacaagccgtcaatggt 155 ||||||||||||||| ||||||||||||||||||| || ||||| Sbjct: 25969485 ggtcatattaggtaccattattggcatctacaagccatcgatggt 25969529 Score = 42.1 bits (21), Expect = 1.9 Identities = 21/21 (100%) Strand = Plus / Plus Query: 544 ttggccatcagtacttttcag 564 ||||||||||||||||||||| Sbjct: 25972375 ttggccatcagtacttttcag 25972395
>dbj|AP002910.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, PAC clone:P0707D10 Length = 172003 Score = 186 bits (94), Expect = 5e-44 Identities = 115/122 (94%) Strand = Plus / Plus Query: 334 ttgaagttatctgctcctcttgcaactggtcttattttggtctcatgttgtcctggtggt 393 |||||||||||||||||||||||||||||||||||||| || |||||||| |||||||| Sbjct: 66811 ttgaagttatctgctcctcttgcaactggtcttattttagtgtcatgttgccctggtgga 66870 Query: 394 caagcatcaaatgttgcaacttacatatccaaaggaaatgtggcactttcagttcttatg 453 ||||||||||||||||| ||||| ||||||||||||||||| |||||||||||||||||| Sbjct: 66871 caagcatcaaatgttgctacttatatatccaaaggaaatgtcgcactttcagttcttatg 66930 Query: 454 ac 455 || Sbjct: 66931 ac 66932 Score = 155 bits (78), Expect = 2e-34 Identities = 102/110 (92%) Strand = Plus / Plus Query: 157 acctggttggagactgatctttttactctgggcctaggattcctaatgctgtcaatggga 216 ||||||||||||||||||||||| ||| |||||||||||||||||||||| ||||||||| Sbjct: 65692 acctggttggagactgatcttttcactgtgggcctaggattcctaatgctatcaatggga 65751 Query: 217 ctaacattgacatttgaagatttcaggagatgtttaaggaatccatggac 266 ||||||||||| || ||||||||||||||||| | |||||||||||||| Sbjct: 65752 ctaacattgaccttcgaagatttcaggagatgcatgaggaatccatggac 65801 Score = 109 bits (55), Expect = 1e-20 Identities = 73/79 (92%) Strand = Plus / Plus Query: 463 tcgactattggtgctatagcgatgacaccactccttactaaactccttgctggtcaatta 522 ||||||||||||||||||| ||||||||||||||||||||||||||| ||||||||| | Sbjct: 68269 tcgactattggtgctatagtgatgacaccactccttactaaactcctagctggtcaactg 68328 Query: 523 gtccctgttgatgctgcag 541 || ||||| |||||||||| Sbjct: 68329 gttcctgtcgatgctgcag 68347 Score = 101 bits (51), Expect = 2e-18 Identities = 87/99 (87%) Strand = Plus / Plus Query: 15 agctaacatttctagtaacctgccagcgagcgggcctactggagcaagccagtacgagaa 74 ||||||||| || ||||| ||||||| |||| |||| || ||||| |||||||||||| Sbjct: 65332 agctaacatatccagtaatctgccagagagcattcctagtgaagcaaaccagtacgagaa 65391 Query: 75 aatagttgagctactcaccactcttttccctgtctgggt 113 |||||||||||| || ||||||||||||||||||||||| Sbjct: 65392 aatagttgagctgcttaccactcttttccctgtctgggt 65430 Score = 81.8 bits (41), Expect = 2e-12 Identities = 50/53 (94%) Strand = Plus / Plus Query: 271 ggtgtgggatttcttgcgcaatatttgatcaaacctatgctaggatatgctat 323 |||||||||||||||||||| |||||||||||||||||||| |||| |||||| Sbjct: 65913 ggtgtgggatttcttgcgcagtatttgatcaaacctatgctgggatttgctat 65965 Score = 58.0 bits (29), Expect = 3e-05 Identities = 41/45 (91%) Strand = Plus / Plus Query: 111 ggtcatattaggtacagttattggcatctacaagccgtcaatggt 155 ||||||||||||||| ||||||||||||||||||| || ||||| Sbjct: 65552 ggtcatattaggtaccattattggcatctacaagccatcgatggt 65596 Score = 42.1 bits (21), Expect = 1.9 Identities = 21/21 (100%) Strand = Plus / Plus Query: 544 ttggccatcagtacttttcag 564 ||||||||||||||||||||| Sbjct: 68442 ttggccatcagtacttttcag 68462
>ref|NM_179758.2| Arabidopsis thaliana bile acid:sodium symporter/ transporter AT2G26900 mRNA, complete cds Length = 1504 Score = 87.7 bits (44), Expect = 4e-14 Identities = 302/388 (77%) Strand = Plus / Plus Query: 131 ttggcatctacaagccgtcaatggtcacctggttggagactgatctttttactctgggcc 190 ||||||||| |||||| || |||| || |||||||| || ||||| |||||||| || | Sbjct: 418 ttggcatcttcaagccatccttggttacatggttggaaacagatctctttactctaggtc 477 Query: 191 taggattcctaatgctgtcaatgggactaacattgacatttgaagatttcaggagatgtt 250 | ||||| || ||||| || ||||| | || | || |||||||||||||| ||||||| Sbjct: 478 ttggatttcttatgctttccatgggtttgactcttacgtttgaagatttcagaagatgtt 537 Query: 251 taaggaatccatggacagttggtgtgggatttcttgcgcaatatttgatcaaacctatgc 310 || | ||||||||||| || ||||| || |||||||| |||||| ||||||| || || | Sbjct: 538 tacgtaatccatggacggtgggtgttggttttcttgctcaatatatgatcaagccaattc 597 Query: 311 taggatatgctatcgcattgacattgaagttatctgctcctcttgcaactggtcttattt 370 |||| | | || ||| |||| | ||| | || || |||||||| ||||| ||||| Sbjct: 598 taggttttctcattgcaatgactcttaagctttcggcacctcttgcgactggccttatcc 657 Query: 371 tggtctcatgttgtcctggtggtcaagcatcaaatgttgcaacttacatatccaaaggaa 430 | |||||||| || ||||| || || || ||||| ||||| |||||||| ||||| || | Sbjct: 658 tagtctcatgctgccctggaggacaggcgtcaaacgttgctacttacatttccaagggga 717 Query: 431 atgtggcactttcagttcttatgaccacttgctcgactattggtgctatagcgatgacac 490 |||| || || || || || ||||| || || || || ||||| ||||| ||||| | Sbjct: 718 atgtagcgctctctgtactcatgacaacgtgttcaaccattggggctattataatgactc 777 Query: 491 cactccttactaaactccttgctggtca 518 | || |||||||| || ||||||||||| Sbjct: 778 ctcttcttactaagcttcttgctggtca 805
>gb|BT003925.1| Arabidopsis thaliana clone RAFL15-23-I10 (R20694) putative Na+ dependent ileal bile acid transporter (At2g26900) mRNA, complete cds Length = 1409 Score = 87.7 bits (44), Expect = 4e-14 Identities = 302/388 (77%) Strand = Plus / Plus Query: 131 ttggcatctacaagccgtcaatggtcacctggttggagactgatctttttactctgggcc 190 ||||||||| |||||| || |||| || |||||||| || ||||| |||||||| || | Sbjct: 308 ttggcatcttcaagccatccttggttacatggttggaaacagatctctttactctaggtc 367 Query: 191 taggattcctaatgctgtcaatgggactaacattgacatttgaagatttcaggagatgtt 250 | ||||| || ||||| || ||||| | || | || |||||||||||||| ||||||| Sbjct: 368 ttggatttcttatgctttccatgggtttgactcttacgtttgaagatttcagaagatgtt 427 Query: 251 taaggaatccatggacagttggtgtgggatttcttgcgcaatatttgatcaaacctatgc 310 || | ||||||||||| || ||||| || |||||||| |||||| ||||||| || || | Sbjct: 428 tacgtaatccatggacggtgggtgttggttttcttgctcaatatatgatcaagccaattc 487 Query: 311 taggatatgctatcgcattgacattgaagttatctgctcctcttgcaactggtcttattt 370 |||| | | || ||| |||| | ||| | || || |||||||| ||||| ||||| Sbjct: 488 taggttttctcattgcaatgactcttaagctttcggcacctcttgcgactggccttatcc 547 Query: 371 tggtctcatgttgtcctggtggtcaagcatcaaatgttgcaacttacatatccaaaggaa 430 | |||||||| || ||||| || || || ||||| ||||| |||||||| ||||| || | Sbjct: 548 tagtctcatgctgccctggaggacaggcgtcaaacgttgctacttacatttccaagggga 607 Query: 431 atgtggcactttcagttcttatgaccacttgctcgactattggtgctatagcgatgacac 490 |||| || || || || || ||||| || || || || ||||| ||||| ||||| | Sbjct: 608 atgtagcgctctctgtactcatgacaacgtgttcaaccattggggctattataatgactc 667 Query: 491 cactccttactaaactccttgctggtca 518 | || |||||||| || ||||||||||| Sbjct: 668 ctcttcttactaagcttcttgctggtca 695
>gb|AY568720.1| Lycopersicon esculentum putative anion:sodium symporter mRNA, complete cds Length = 1224 Score = 83.8 bits (42), Expect = 6e-13 Identities = 156/194 (80%) Strand = Plus / Plus Query: 91 accactcttttccctgtctgggtcatattaggtacagttattggcatctacaagccgtca 150 ||||| ||||| ||| | ||||| ||||| |||||| | |||||||| || || || || Sbjct: 298 accaccctttttcctctatgggttatattgggtacaatcattggcatatataaaccttct 357 Query: 151 atggtcacctggttggagactgatctttttactctgggcctaggattcctaatgctgtca 210 |||||| |||||||| || ||||| || |||||||| | ||||| |||||||| ||| Sbjct: 358 gcggtcacttggttggaaacagatctcttcactctgggtttgggatttctaatgctttca 417 Query: 211 atgggactaacattgacatttgaagatttcaggagatgtttaaggaatccatggacagtt 270 ||||| | ||| | |||||||| || ||| | |||||||||||||| |||||||| || Sbjct: 418 atgggtttgacactaacatttgacgacttccgaagatgtttaaggaacccatggactgta 477 Query: 271 ggtgtgggatttct 284 ||||| |||||||| Sbjct: 478 ggtgttggatttct 491 Score = 48.1 bits (24), Expect = 0.031 Identities = 147/188 (78%) Strand = Plus / Plus Query: 352 cttgcaactggtcttattttggtctcatgttgtcctggtggtcaagcatcaaatgttgca 411 ||||| |||||||| || ||||| ||||| |||||||| || ||||| || ||||| ||| Sbjct: 559 cttgctactggtctgatcttggtgtcatgctgtcctggaggccaagcttctaatgtggca 618 Query: 412 acttacatatccaaaggaaatgtggcactttcagttcttatgaccacttgctcgactatt 471 || || || || || || ||||| || || || ||||| ||||| || || || || || Sbjct: 619 acatatatttcaaaggggaatgtagccctctctgttctaatgacaacgtgttcaacagtt 678 Query: 472 ggtgctatagcgatgacaccactccttactaaactccttgctggtcaattagtccctgtt 531 || ||||| | ||||||||| || || ||||| || | |||||||| | ||||| ||| Sbjct: 679 ggagctattgtgatgacacccctgctgactaagcttttagctggtcagcttgtcccagtt 738 Query: 532 gatgctgc 539 |||||||| Sbjct: 739 gatgctgc 746
>gb|AF498303.1| Arabidopsis thaliana putative sodium-dependent bile acid symporter (Sbf1) mRNA, complete cds Length = 1340 Score = 79.8 bits (40), Expect = 9e-12 Identities = 301/388 (77%) Strand = Plus / Plus Query: 131 ttggcatctacaagccgtcaatggtcacctggttggagactgatctttttactctgggcc 190 ||||||||| |||||| || |||| || |||||||| || ||||| |||| ||| || | Sbjct: 419 ttggcatcttcaagccatccttggttacatggttggaaacagatctctttagtctaggtc 478 Query: 191 taggattcctaatgctgtcaatgggactaacattgacatttgaagatttcaggagatgtt 250 | ||||| || ||||| || ||||| | || | || |||||||||||||| ||||||| Sbjct: 479 ttggatttcttatgctttccatgggtttgactcttacgtttgaagatttcagaagatgtt 538 Query: 251 taaggaatccatggacagttggtgtgggatttcttgcgcaatatttgatcaaacctatgc 310 || | ||||||||||| || ||||| || |||||||| |||||| ||||||| || || | Sbjct: 539 tacgtaatccatggacggtgggtgttggttttcttgctcaatatatgatcaagccaattc 598 Query: 311 taggatatgctatcgcattgacattgaagttatctgctcctcttgcaactggtcttattt 370 |||| | | || ||| |||| | ||| | || || |||||||| ||||| ||||| Sbjct: 599 taggttttctcattgcaatgactcttaagctttcggcacctcttgcgactggccttatcc 658 Query: 371 tggtctcatgttgtcctggtggtcaagcatcaaatgttgcaacttacatatccaaaggaa 430 | |||||||| || ||||| || || || ||||| ||||| |||||||| ||||| || | Sbjct: 659 tagtctcatgctgccctggaggacaggcgtcaaacgttgctacttacatttccaagggga 718 Query: 431 atgtggcactttcagttcttatgaccacttgctcgactattggtgctatagcgatgacac 490 |||| || || || || || ||||| || || || || ||||| ||||| ||||| | Sbjct: 719 atgtagcgctctctgtactcatgacaacgtgttcaaccattggggctattataatgactc 778 Query: 491 cactccttactaaactccttgctggtca 518 | || |||||||| || ||||||||||| Sbjct: 779 ctcttcttactaagcttcttgctggtca 806
>gb|AC005168.3| Arabidopsis thaliana chromosome 2 clone F12C20 map B68, complete sequence Length = 87978 Score = 54.0 bits (27), Expect = 5e-04 Identities = 87/107 (81%) Strand = Plus / Plus Query: 160 tggttggagactgatctttttactctgggcctaggattcctaatgctgtcaatgggacta 219 |||||||| || ||||| |||||||| || || ||||| || ||||| || ||||| | Sbjct: 27346 tggttggaaacagatctctttactctaggtcttggatttcttatgctttccatgggtttg 27405 Query: 220 acattgacatttgaagatttcaggagatgtttaaggaatccatggac 266 || | || |||||||||||||| ||||||||| | ||||||||||| Sbjct: 27406 actcttacgtttgaagatttcagaagatgtttacgtaatccatggac 27452
>gb|AC134610.5| Mus musculus BAC clone RP23-79B24 from chromosome 13, complete sequence Length = 235557 Score = 40.1 bits (20), Expect = 7.7 Identities = 20/20 (100%) Strand = Plus / Minus Query: 365 ttattttggtctcatgttgt 384 |||||||||||||||||||| Sbjct: 16281 ttattttggtctcatgttgt 16262
>gb|AC006377.3| Homo sapiens BAC clone RP11-450H7 from 7, complete sequence Length = 176463 Score = 40.1 bits (20), Expect = 7.7 Identities = 23/24 (95%) Strand = Plus / Minus Query: 540 aggcttggccatcagtacttttca 563 |||||||| ||||||||||||||| Sbjct: 8985 aggcttgggcatcagtacttttca 8962
>gb|AC127553.3| Mus musculus BAC clone RP24-553F11 from chromosome 5, complete sequence Length = 159693 Score = 40.1 bits (20), Expect = 7.7 Identities = 20/20 (100%) Strand = Plus / Plus Query: 532 gatgctgcaggcttggccat 551 |||||||||||||||||||| Sbjct: 140864 gatgctgcaggcttggccat 140883
>gb|AF426384.1| Danio rerio deltaD protein gene, complete cds Length = 13352 Score = 40.1 bits (20), Expect = 7.7 Identities = 23/24 (95%) Strand = Plus / Plus Query: 289 caatatttgatcaaacctatgcta 312 |||||||| ||||||||||||||| Sbjct: 5609 caatattttatcaaacctatgcta 5632
>gb|AC142309.1| Pan troglodytes BAC clone RP43-45E24 from 7, complete sequence Length = 186055 Score = 40.1 bits (20), Expect = 7.7 Identities = 23/24 (95%) Strand = Plus / Plus Query: 540 aggcttggccatcagtacttttca 563 |||||||| ||||||||||||||| Sbjct: 85997 aggcttgggcatcagtacttttca 86020
>emb|AL589908.4| Human DNA sequence from clone RP11-258M3 on chromosome 6, complete sequence Length = 13135 Score = 40.1 bits (20), Expect = 7.7 Identities = 20/20 (100%) Strand = Plus / Minus Query: 414 ttacatatccaaaggaaatg 433 |||||||||||||||||||| Sbjct: 13094 ttacatatccaaaggaaatg 13075
>emb|AL355997.10| Human DNA sequence from clone RP3-335N17 on chromosome 6 Contains the 3' end of the PKHD1 gene for polycystic kidney and hepatic disease 1 (autosomal recessive) (TIG multiple domains-1, FCYT, ARPKD) and a novel gene, complete sequence Length = 94924 Score = 40.1 bits (20), Expect = 7.7 Identities = 20/20 (100%) Strand = Plus / Minus Query: 414 ttacatatccaaaggaaatg 433 |||||||||||||||||||| Sbjct: 59 ttacatatccaaaggaaatg 40
>ref|NM_001025506.1| Danio rerio adiponectin receptor 2 (adipor2), mRNA Length = 2494 Score = 40.1 bits (20), Expect = 7.7 Identities = 20/20 (100%) Strand = Plus / Minus Query: 375 ctcatgttgtcctggtggtc 394 |||||||||||||||||||| Sbjct: 324 ctcatgttgtcctggtggtc 305
>emb|AL606508.12| Mouse DNA sequence from clone RP23-180B9 on chromosome 11 Contains the 3' end of a novel gene and a CpG island, complete sequence Length = 189315 Score = 40.1 bits (20), Expect = 7.7 Identities = 20/20 (100%) Strand = Plus / Plus Query: 244 agatgtttaaggaatccatg 263 |||||||||||||||||||| Sbjct: 93884 agatgtttaaggaatccatg 93903
>emb|CR792427.8| Zebrafish DNA sequence from clone DKEY-249D19 in linkage group 4, complete sequence Length = 31259 Score = 40.1 bits (20), Expect = 7.7 Identities = 20/20 (100%) Strand = Plus / Minus Query: 375 ctcatgttgtcctggtggtc 394 |||||||||||||||||||| Sbjct: 28098 ctcatgttgtcctggtggtc 28079
>gb|AF002109.3| Arabidopsis thaliana chromosome 2 clone T28M21 map CIC10A06, complete sequence Length = 108847 Score = 40.1 bits (20), Expect = 7.7 Identities = 20/20 (100%) Strand = Plus / Plus Query: 366 tattttggtctcatgttgtc 385 |||||||||||||||||||| Sbjct: 5993 tattttggtctcatgttgtc 6012
>gb|AC003000.3| Arabidopsis thaliana chromosome 2 clone T5I7 map CIC10A06, complete sequence Length = 92624 Score = 40.1 bits (20), Expect = 7.7 Identities = 20/20 (100%) Strand = Plus / Plus Query: 366 tattttggtctcatgttgtc 385 |||||||||||||||||||| Sbjct: 79865 tattttggtctcatgttgtc 79884
>gb|AC073569.26| Homo sapiens 12 BAC RP11-530C5 (Roswell Park Cancer Institute Human BAC Library) complete sequence Length = 177734 Score = 40.1 bits (20), Expect = 7.7 Identities = 20/20 (100%) Strand = Plus / Plus Query: 335 tgaagttatctgctcctctt 354 |||||||||||||||||||| Sbjct: 48526 tgaagttatctgctcctctt 48545
>ref|XM_684130.1| PREDICTED: Danio rerio similar to Adiponectin receptor protein 2 (LOC560728), mRNA Length = 2485 Score = 40.1 bits (20), Expect = 7.7 Identities = 20/20 (100%) Strand = Plus / Minus Query: 375 ctcatgttgtcctggtggtc 394 |||||||||||||||||||| Sbjct: 322 ctcatgttgtcctggtggtc 303
>gb|AC154723.2| Mus musculus BAC clone RP24-372I16 from chromosome 13, complete sequence Length = 191694 Score = 40.1 bits (20), Expect = 7.7 Identities = 20/20 (100%) Strand = Plus / Plus Query: 365 ttattttggtctcatgttgt 384 |||||||||||||||||||| Sbjct: 100671 ttattttggtctcatgttgt 100690
>emb|BX842699.5| Zebrafish DNA sequence from clone CH211-281K12 in linkage group 4, complete sequence Length = 86258 Score = 40.1 bits (20), Expect = 7.7 Identities = 20/20 (100%) Strand = Plus / Plus Query: 375 ctcatgttgtcctggtggtc 394 |||||||||||||||||||| Sbjct: 57980 ctcatgttgtcctggtggtc 57999
>gb|AF100933.1|AF100933 Oncorhynchus mykiss carbonyl reductase/20beta-hydroxysteroid dehydrogenase A gene, complete cds Length = 3010 Score = 40.1 bits (20), Expect = 7.7 Identities = 20/20 (100%) Strand = Plus / Plus Query: 260 catggacagttggtgtggga 279 |||||||||||||||||||| Sbjct: 2723 catggacagttggtgtggga 2742
>gb|AF100932.1|AF100932 Oncorhynchus mykiss carbonyl reductase/20beta-hydroxysteroid dehydrogenase B gene, complete cds Length = 5522 Score = 40.1 bits (20), Expect = 7.7 Identities = 20/20 (100%) Strand = Plus / Plus Query: 260 catggacagttggtgtggga 279 |||||||||||||||||||| Sbjct: 5227 catggacagttggtgtggga 5246
>gb|AF100931.1|AF100931 Oncorhynchus mykiss carbonyl reductase/20beta-hydroxysteroid dehydrogenase A mRNA, complete cds Length = 1278 Score = 40.1 bits (20), Expect = 7.7 Identities = 20/20 (100%) Strand = Plus / Plus Query: 260 catggacagttggtgtggga 279 |||||||||||||||||||| Sbjct: 913 catggacagttggtgtggga 932
>gb|AF100930.1|AF100930 Oncorhynchus mykiss carbonyl reductase/20beta-hydroxysteroid dehydrogenase B mRNA, complete cds Length = 1216 Score = 40.1 bits (20), Expect = 7.7 Identities = 20/20 (100%) Strand = Plus / Plus Query: 260 catggacagttggtgtggga 279 |||||||||||||||||||| Sbjct: 904 catggacagttggtgtggga 923
>emb|CR848742.8| Zebrafish DNA sequence from clone DKEY-181C1 in linkage group 16, complete sequence Length = 177769 Score = 40.1 bits (20), Expect = 7.7 Identities = 20/20 (100%) Strand = Plus / Minus Query: 399 atcaaatgttgcaacttaca 418 |||||||||||||||||||| Sbjct: 49194 atcaaatgttgcaacttaca 49175
>gb|AC015535.11| Mus musculus chromosome 5, clone RP23-39M18, complete sequence Length = 263382 Score = 40.1 bits (20), Expect = 7.7 Identities = 20/20 (100%) Strand = Plus / Minus Query: 532 gatgctgcaggcttggccat 551 |||||||||||||||||||| Sbjct: 224286 gatgctgcaggcttggccat 224267
>dbj|AP006638.1| Lotus japonicus genomic DNA, chromosome 3, clone:LjT47I16, TM0208c, complete sequence Length = 48081 Score = 40.1 bits (20), Expect = 7.7 Identities = 20/20 (100%) Strand = Plus / Plus Query: 195 attcctaatgctgtcaatgg 214 |||||||||||||||||||| Sbjct: 19311 attcctaatgctgtcaatgg 19330
>emb|AL672076.10| Mouse DNA sequence from clone RP23-161N17 on chromosome 4, complete sequence Length = 208396 Score = 40.1 bits (20), Expect = 7.7 Identities = 23/24 (95%) Strand = Plus / Minus Query: 241 aggagatgtttaaggaatccatgg 264 ||||||||||||||||| |||||| Sbjct: 5143 aggagatgtttaaggaaaccatgg 5120 Database: nt Posted date: May 29, 2006 11:10 AM Number of letters in database: 3,984,495,279 Number of sequences in database: 917,343 Database: /shigen/export/home/twatanab/db/nt/nt.01 Posted date: May 29, 2006 11:16 AM Number of letters in database: 3,988,174,986 Number of sequences in database: 835,257 Database: /shigen/export/home/twatanab/db/nt/nt.02 Posted date: May 29, 2006 11:21 AM Number of letters in database: 3,991,246,324 Number of sequences in database: 771,481 Database: /shigen/export/home/twatanab/db/nt/nt.03 Posted date: May 29, 2006 11:27 AM Number of letters in database: 3,990,718,311 Number of sequences in database: 977,174 Database: /shigen/export/home/twatanab/db/nt/nt.04 Posted date: May 29, 2006 11:29 AM Number of letters in database: 1,278,410,368 Number of sequences in database: 400,813 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 4,502,161 Number of Sequences: 3902068 Number of extensions: 4502161 Number of successful extensions: 84588 Number of sequences better than 10.0: 35 Number of HSP's better than 10.0 without gapping: 35 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 84505 Number of HSP's gapped (non-prelim): 82 length of query: 564 length of database: 17,233,045,268 effective HSP length: 23 effective length of query: 541 effective length of database: 17,143,297,704 effective search space: 9274524057864 effective search space used: 9274524057864 T: 0 A: 0 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 20 (40.1 bits)