ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日：2016年5月1日

Clone Information

BLAST Search Result

Clone Name bags8d20
Clone Library Name barley_pub
No. Definition Score
(bits)		 E
Value
1emb|X63052.1|HVCP29 Hordeum vulgare gene for CP29 precursor for ... 414 e-113
2gb|AC135460.3| Oryza sativa (japonica cultivar-group) chromosome... 149 4e-33
3dbj|AP008217.1| Oryza sativa (japonica cultivar-group) genomic D... 149 4e-33
4dbj|AK104824.1| Oryza sativa (japonica cultivar-group) cDNA clon... 149 4e-33
5dbj|AK098872.1| Oryza sativa (japonica cultivar-group) cDNA clon... 149 4e-33
6dbj|AK061295.1| Oryza sativa (japonica cultivar-group) cDNA clon... 149 4e-33
7gb|DP000010.1| Oryza sativa (japonica cultivar-group) chromosome... 149 4e-33
8gb|U23189.1|ZMU23189 Zea mays chlorophyll a/b-binding apoprotein... 88 1e-14
9gb|AY105650.1| Zea mays PCO135935 mRNA sequence 80 3e-12
10gb|U23188.1|ZMU23188 Zea mays chlorophyll a/b-binding apoprotein... 76 5e-11
11gb|CP000143.1| Rhodobacter sphaeroides 2.4.1 chromosome 1, compl... 44 0.17
12emb|Y14197.2|RSY14197 Rhodobacter sphaeroides uptake hydrogenase... 44 0.17
13gb|AF232689.2| Rat cytomegalovirus Maastricht, complete genome 42 0.68
14gb|AY111693.1| Zea mays CL6746_1 mRNA sequence 42 0.68
15gb|CP000153.1| Thiomicrospira denitrificans ATCC 33889, complete... 40 2.7
16gb|AY509120.1| Streptomyces bikiniensis strain NRRL 2737 chalcom... 40 2.7
17gb|AC183919.2| Pan troglodytes BAC clone CH251-691O9 from chromo... 40 2.7
18emb|CR931997.1| Corynebacterium jeikeium K411 complete genome 40 2.7
19gb|AC092439.4| Homo sapiens BAC clone RP11-385C9 from 7, complet... 40 2.7
20gb|CP000090.1| Ralstonia eutropha JMP134 chromosome 1, complete ... 40 2.7
21emb|AL133473.5| Human DNA sequence from clone RP1-236A3 on chrom... 40 2.7
22gb|AF159555.1| Eastern equine encephalomyelitis virus isolate TX... 40 2.7 
>emb|X63052.1|HVCP29 Hordeum vulgare gene for CP29 precursor for core chlorophyll a/b
           binding (CAB) protein of photosystem II (PSII)
          Length = 2689

 Score =  414 bits (209), Expect = e-113
 Identities = 212/213 (99%)
 Strand = Plus / Plus

                                                                       
Query: 1   acgcccctctgctgcacgccctttctccctcccaaccttgggcttgaggcaatggcggcg 60
           ||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct: 725 acgcccctctgctgcacgccccttctccctcccaaccttgggcttgaggcaatggcggcg 784

                                                                       
Query: 61  ctcgctccgaccaagatgctcggcacccggctcgacttcgccggctcctccaggtatgcc 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 785 ctcgctccgaccaagatgctcggcacccggctcgacttcgccggctcctccaggtatgcc 844

                                                                       
Query: 121 acagcggcgccgactgccggcgcgcagaagatcgtctccctcttcgaccgcttcaacaag 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 845 acagcggcgccgactgccggcgcgcagaagatcgtctccctcttcgaccgcttcaacaag 904

                                            
Query: 181 aagcctgccccgaagccgaagcccgcgcccgtg 213
           |||||||||||||||||||||||||||||||||
Sbjct: 905 aagcctgccccgaagccgaagcccgcgcccgtg 937
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>gb|AC135460.3| Oryza sativa (japonica cultivar-group) chromosome 11 clone
             OSJNBb0091I11, complete sequence
          Length = 135993

 Score =  149 bits (75), Expect = 4e-33
 Identities = 114/127 (89%)
 Strand = Plus / Plus

                                                                         
Query: 39    tgggcttgaggcaatggcggcgctcgctccgaccaagatgctcggcacccggctcgactt 98
             ||||| |||||| |||||||||||||| ||| ||||||||||||||||||||||| ||||
Sbjct: 38104 tgggcctgaggcgatggcggcgctcgccccgtccaagatgctcggcacccggctcaactt 38163

                                                                         
Query: 99    cgccggctcctccaggtatgccacagcggcgccgactgccggcgcgcagaagatcgtctc 158
             ||||||||||||| | || ||||| ||||| |||||  |||| |||||||||||||||||
Sbjct: 38164 cgccggctcctcccgctacgccaccgcggcaccgaccaccggagcgcagaagatcgtctc 38223

                    
Query: 159   cctcttc 165
             |||||||
Sbjct: 38224 cctcttc 38230
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>dbj|AP008217.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 11, complete
               sequence
          Length = 28386948

 Score =  149 bits (75), Expect = 4e-33
 Identities = 114/127 (89%)
 Strand = Plus / Plus

                                                                           
Query: 39      tgggcttgaggcaatggcggcgctcgctccgaccaagatgctcggcacccggctcgactt 98
               ||||| |||||| |||||||||||||| ||| ||||||||||||||||||||||| ||||
Sbjct: 7579018 tgggcctgaggcgatggcggcgctcgccccgtccaagatgctcggcacccggctcaactt 7579077

                                                                           
Query: 99      cgccggctcctccaggtatgccacagcggcgccgactgccggcgcgcagaagatcgtctc 158
               ||||||||||||| | || ||||| ||||| |||||  |||| |||||||||||||||||
Sbjct: 7579078 cgccggctcctcccgctacgccaccgcggcaccgaccaccggagcgcagaagatcgtctc 7579137

                      
Query: 159     cctcttc 165
               |||||||
Sbjct: 7579138 cctcttc 7579144
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>dbj|AK104824.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-041-F05, full
           insert sequence
          Length = 1157

 Score =  149 bits (75), Expect = 4e-33
 Identities = 114/127 (89%)
 Strand = Plus / Plus

                                                                       
Query: 39  tgggcttgaggcaatggcggcgctcgctccgaccaagatgctcggcacccggctcgactt 98
           ||||| |||||| |||||||||||||| ||| ||||||||||||||||||||||| ||||
Sbjct: 78  tgggcctgaggcgatggcggcgctcgccccgtccaagatgctcggcacccggctcaactt 137

                                                                       
Query: 99  cgccggctcctccaggtatgccacagcggcgccgactgccggcgcgcagaagatcgtctc 158
           ||||||||||||| | || ||||| ||||| |||||  |||| |||||||||||||||||
Sbjct: 138 cgccggctcctcccgctacgccaccgcggcaccgaccaccggagcgcagaagatcgtctc 197

                  
Query: 159 cctcttc 165
           |||||||
Sbjct: 198 cctcttc 204
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>dbj|AK098872.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013001B10, full
           insert sequence
          Length = 1101

 Score =  149 bits (75), Expect = 4e-33
 Identities = 114/127 (89%)
 Strand = Plus / Plus

                                                                       
Query: 39  tgggcttgaggcaatggcggcgctcgctccgaccaagatgctcggcacccggctcgactt 98
           ||||| |||||| |||||||||||||| ||| ||||||||||||||||||||||| ||||
Sbjct: 68  tgggcctgaggcgatggcggcgctcgccccgtccaagatgctcggcacccggctcaactt 127

                                                                       
Query: 99  cgccggctcctccaggtatgccacagcggcgccgactgccggcgcgcagaagatcgtctc 158
           ||||||||||||| | || ||||| ||||| |||||  |||| |||||||||||||||||
Sbjct: 128 cgccggctcctcccgctacgccaccgcggcaccgaccaccggagcgcagaagatcgtctc 187

                  
Query: 159 cctcttc 165
           |||||||
Sbjct: 188 cctcttc 194
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>dbj|AK061295.1| Oryza sativa (japonica cultivar-group) cDNA clone:006-301-D05, full
           insert sequence
          Length = 1186

 Score =  149 bits (75), Expect = 4e-33
 Identities = 114/127 (89%)
 Strand = Plus / Plus

                                                                       
Query: 39  tgggcttgaggcaatggcggcgctcgctccgaccaagatgctcggcacccggctcgactt 98
           ||||| |||||| |||||||||||||| ||| ||||||||||||||||||||||| ||||
Sbjct: 79  tgggcctgaggcgatggcggcgctcgccccgtccaagatgctcggcacccggctcaactt 138

                                                                       
Query: 99  cgccggctcctccaggtatgccacagcggcgccgactgccggcgcgcagaagatcgtctc 158
           ||||||||||||| | || ||||| ||||| |||||  |||| |||||||||||||||||
Sbjct: 139 cgccggctcctcccgctacgccaccgcggcaccgaccaccggagcgcagaagatcgtctc 198

                  
Query: 159 cctcttc 165
           |||||||
Sbjct: 199 cctcttc 205
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>gb|DP000010.1| Oryza sativa (japonica cultivar-group) chromosome 11, complete sequence
          Length = 28369397

 Score =  149 bits (75), Expect = 4e-33
 Identities = 114/127 (89%)
 Strand = Plus / Plus

                                                                           
Query: 39      tgggcttgaggcaatggcggcgctcgctccgaccaagatgctcggcacccggctcgactt 98
               ||||| |||||| |||||||||||||| ||| ||||||||||||||||||||||| ||||
Sbjct: 7649105 tgggcctgaggcgatggcggcgctcgccccgtccaagatgctcggcacccggctcaactt 7649164

                                                                           
Query: 99      cgccggctcctccaggtatgccacagcggcgccgactgccggcgcgcagaagatcgtctc 158
               ||||||||||||| | || ||||| ||||| |||||  |||| |||||||||||||||||
Sbjct: 7649165 cgccggctcctcccgctacgccaccgcggcaccgaccaccggagcgcagaagatcgtctc 7649224

                      
Query: 159     cctcttc 165
               |||||||
Sbjct: 7649225 cctcttc 7649231
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>gb|U23189.1|ZMU23189 Zea mays chlorophyll a/b-binding apoprotein CP26 (Lhcb5-2) mRNA,
           complete cds
          Length = 1073

 Score = 87.7 bits (44), Expect = 1e-14
 Identities = 95/112 (84%)
 Strand = Plus / Plus

                                                                       
Query: 50  caatggcggcgctcgctccgaccaagatgctcggcacccggctcgacttcgccggctcct 109
           |||||||||||||||||||  ||||||| || ||||||| |||| |||||||||||||||
Sbjct: 30  caatggcggcgctcgctccatccaagattctgggcacccagctcaacttcgccggctcct 89

                                                               
Query: 110 ccaggtatgccacagcggcgccgactgccggcgcgcagaagatcgtctccct 161
           || | || ||||| || ||||| || || || || |||||||| ||||||||
Sbjct: 90  cccgctacgccaccgcagcgcccaccgcgggggctcagaagattgtctccct 141
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>gb|AY105650.1| Zea mays PCO135935 mRNA sequence
          Length = 1366

 Score = 79.8 bits (40), Expect = 3e-12
 Identities = 94/112 (83%)
 Strand = Plus / Plus

                                                                       
Query: 50  caatggcggcgctcgctccgaccaagatgctcggcacccggctcgacttcgccggctcct 109
           |||||||||||||||||||  ||||||| || ||||||| |||| ||||||| |||||||
Sbjct: 174 caatggcggcgctcgctccatccaagattctgggcacccagctcaacttcgcgggctcct 233

                                                               
Query: 110 ccaggtatgccacagcggcgccgactgccggcgcgcagaagatcgtctccct 161
           || | || ||||| || ||||| || || || || |||||||| ||||||||
Sbjct: 234 cccgctacgccaccgcagcgcccaccgcgggggctcagaagattgtctccct 285
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>gb|U23188.1|ZMU23188 Zea mays chlorophyll a/b-binding apoprotein CP26 (Lhcb5-1) mRNA,
           complete cds
          Length = 957

 Score = 75.8 bits (38), Expect = 5e-11
 Identities = 95/114 (83%)
 Strand = Plus / Plus

                                                                       
Query: 52  atggcggcgctcgctccgaccaagatgctcggcacccggctcgacttcgccggctcctcc 111
           |||||||| || |||||  ||||||| || ||||||  |||| |||||||||||||||||
Sbjct: 34  atggcggctcttgctccatccaagattctgggcaccaagctcaacttcgccggctcctcc 93

                                                                 
Query: 112 aggtatgccacagcggcgccgactgccggcgcgcagaagatcgtctccctcttc 165
            | || ||||| || ||||| || || || || |||||||||||||||||||||
Sbjct: 94  cgctacgccaccgcagcgcccaccgcgggggctcagaagatcgtctccctcttc 147
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>gb|CP000143.1| Rhodobacter sphaeroides 2.4.1 chromosome 1, complete genome
          Length = 3188609

 Score = 44.1 bits (22), Expect = 0.17
 Identities = 22/22 (100%)
 Strand = Plus / Minus

                                     
Query: 189     cccgaagccgaagcccgcgccc 210
               ||||||||||||||||||||||
Sbjct: 2412357 cccgaagccgaagcccgcgccc 2412336
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>emb|Y14197.2|RSY14197 Rhodobacter sphaeroides uptake hydrogenase operon
          Length = 11280

 Score = 44.1 bits (22), Expect = 0.17
 Identities = 22/22 (100%)
 Strand = Plus / Minus

                                  
Query: 190  ccgaagccgaagcccgcgcccg 211
            ||||||||||||||||||||||
Sbjct: 4368 ccgaagccgaagcccgcgcccg 4347
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>gb|AF232689.2| Rat cytomegalovirus Maastricht, complete genome
          Length = 230138

 Score = 42.1 bits (21), Expect = 0.68
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                  
Query: 192   gaagccgaagcccgcgcccgt 212
             |||||||||||||||||||||
Sbjct: 29859 gaagccgaagcccgcgcccgt 29839
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>gb|AY111693.1| Zea mays CL6746_1 mRNA sequence
          Length = 1026

 Score = 42.1 bits (21), Expect = 0.68
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                
Query: 183 gcctgccccgaagccgaagcc 203
           |||||||||||||||||||||
Sbjct: 465 gcctgccccgaagccgaagcc 485
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>gb|CP000153.1| Thiomicrospira denitrificans ATCC 33889, complete genome
          Length = 2201561

 Score = 40.1 bits (20), Expect = 2.7
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 102    cggctcctccaggtatgcca 121
              ||||||||||||||||||||
Sbjct: 333603 cggctcctccaggtatgcca 333622
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>gb|AY509120.1| Streptomyces bikiniensis strain NRRL 2737 chalcomycin biosynthetic gene
             cluster, partial sequence
          Length = 85915

 Score = 40.1 bits (20), Expect = 2.7
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 192   gaagccgaagcccgcgcccg 211
             ||||||||||||||||||||
Sbjct: 68883 gaagccgaagcccgcgcccg 68902
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>gb|AC183919.2| Pan troglodytes BAC clone CH251-691O9 from chromosome 7, complete
             sequence
          Length = 188947

 Score = 40.1 bits (20), Expect = 2.7
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 20    cctttctccctcccaacctt 39
             ||||||||||||||||||||
Sbjct: 96874 cctttctccctcccaacctt 96855
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>emb|CR931997.1| Corynebacterium jeikeium K411 complete genome
          Length = 2462499

 Score = 40.1 bits (20), Expect = 2.7
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                   
Query: 179     agaagcctgccccgaagccg 198
               ||||||||||||||||||||
Sbjct: 1342884 agaagcctgccccgaagccg 1342865
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>gb|AC092439.4| Homo sapiens BAC clone RP11-385C9 from 7, complete sequence
          Length = 35550

 Score = 40.1 bits (20), Expect = 2.7
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 20   cctttctccctcccaacctt 39
            ||||||||||||||||||||
Sbjct: 5580 cctttctccctcccaacctt 5561
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>gb|CP000090.1| Ralstonia eutropha JMP134 chromosome 1, complete sequence
          Length = 3806533

 Score = 40.1 bits (20), Expect = 2.7
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                   
Query: 190     ccgaagccgaagcccgcgcc 209
               ||||||||||||||||||||
Sbjct: 2226819 ccgaagccgaagcccgcgcc 2226800
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>emb|AL133473.5| Human DNA sequence from clone RP1-236A3 on chromosome 6 Contains the 3'
             end of the gene for phenylalanine-tRNA synthetase (FARS1),
             complete sequence
          Length = 57423

 Score = 40.1 bits (20), Expect = 2.7
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 176   acaagaagcctgccccgaag 195
             ||||||||||||||||||||
Sbjct: 38602 acaagaagcctgccccgaag 38583
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>gb|AF159555.1| Eastern equine encephalomyelitis virus isolate TX95-PV5-2547
           structural polyprotein gene, complete cds
          Length = 4114

 Score = 40.1 bits (20), Expect = 2.7
 Identities = 29/32 (90%)
 Strand = Plus / Plus

                                           
Query: 177 caagaagcctgccccgaagccgaagcccgcgc 208
           |||||||||||| || ||||| ||||||||||
Sbjct: 262 caagaagcctgcgcccaagcctaagcccgcgc 293


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 1,460,345
Number of Sequences: 3902068
Number of extensions: 1460345
Number of successful extensions: 109533
Number of sequences better than 10.0: 22
Number of HSP's better than 10.0 without gapping: 22
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 109011
Number of HSP's gapped (non-prelim): 522
length of query: 213
length of database: 17,233,045,268
effective HSP length: 22
effective length of query: 191
effective length of database: 17,147,199,772
effective search space: 3275115156452
effective search space used: 3275115156452
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)
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