ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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| Clone Name | bags8d12 |
|---|---|
| Clone Library Name | barley_pub |
>MYS_AEQIR (P24733) Myosin heavy chain, striated muscle| Length = 1938 Score = 36.2 bits (82), Expect = 0.080 Identities = 23/70 (32%), Positives = 36/70 (51%) Frame = +3 Query: 303 ESVCNHLASKPPEMPEDKEKQLLNSLERIRSIEADLERTKRALQVTVAKQNSLVETLEAV 482 E CNHL ++ E +L ++LER + + D+E+ KR + + L T E V Sbjct: 1011 EDKCNHLNKLKAKL-EQALDELEDNLEREKKVRGDVEKAKRKV------EQDLKSTQENV 1063 Query: 483 QESSRVKRRL 512 ++ RVKR L Sbjct: 1064 EDLERVKREL 1073
>AMOL2_MOUSE (Q8K371) Angiomotin-like protein 2| Length = 772 Score = 33.9 bits (76), Expect = 0.40 Identities = 31/109 (28%), Positives = 47/109 (43%), Gaps = 11/109 (10%) Frame = +3 Query: 183 VRRLENAHPSIMPVPAAEKPQPRTISADDMSACLRRI--------ENLESVCNHLASKPP 338 ++RL AH S+M + + +T+ + M +RR+ E LES HLASK Sbjct: 348 IQRLSEAHESLMRTSSKREALEKTMR-NKMDGEMRRLQDFNRDLRERLESANRHLASKTQ 406 Query: 339 EM---PEDKEKQLLNSLERIRSIEADLERTKRALQVTVAKQNSLVETLE 476 E +D +LL + + LER L+ + Q E LE Sbjct: 407 EAQAGSQDMVAKLLAQSYEQQQEQEKLEREMALLRGAIEDQRRHAELLE 455
>SAS10_RAT (Q6AXX4) Something about silencing protein 10 (Disrupter of| silencing SAS10) (Charged amino acid-rich leucine zipper 1) Length = 470 Score = 33.9 bits (76), Expect = 0.40 Identities = 24/97 (24%), Positives = 42/97 (43%) Frame = +3 Query: 219 PVPAAEKPQPRTISADDMSACLRRIENLESVCNHLASKPPEMPEDKEKQLLNSLERIRSI 398 P K +P++ D++A L + + + PE K K+ NS E +++ Sbjct: 335 PKAKLTKTKPKSAKQTDVNADLTEEPEFDEAALEFYKEMEDRPELKRKKEENSAEE-QAL 393 Query: 399 EADLERTKRALQVTVAKQNSLVETLEAVQESSRVKRR 509 E + KRA+ +AK L + + + RVK R Sbjct: 394 EE--QNAKRAITYQIAKNRGLTPRRKKIDRNPRVKHR 428
>RB6I2_MOUSE (Q99MI1) RAB6-interacting protein 2 (ERC protein 1) (ERC1)| (CAZ-associated structural protein 2) (CAST2) Length = 1120 Score = 33.1 bits (74), Expect = 0.68 Identities = 21/68 (30%), Positives = 33/68 (48%) Frame = +3 Query: 285 RRIENLESVCNHLASKPPEMPEDKEKQLLNSLERIRSIEADLERTKRALQVTVAKQNSLV 464 ++IENL+ E DKEKQ+ + ER++S++AD T AL Sbjct: 578 KKIENLQ-----------EQLRDKEKQMSSLKERVKSLQADTTNTDTALTTLEEALADKE 626 Query: 465 ETLEAVQE 488 T+E ++E Sbjct: 627 RTIERLKE 634 Score = 29.6 bits (65), Expect = 7.5 Identities = 25/106 (23%), Positives = 41/106 (38%) Frame = +3 Query: 204 HPSIMPVPAAEKPQPRTISADDMSACLRRIENLESVCNHLASKPPEMPEDKEKQLLNSLE 383 H ++ K Q I ++ A R+E E++ N + +M E+K Q Sbjct: 502 HIEVLKESLTAKEQRAAILQTEVDALRLRLEEKETMLNKKTKQIQDMAEEKGTQ------ 555 Query: 384 RIRSIEADLERTKRALQVTVAKQNSLVETLEAVQESSRVKRRLFCS 521 ++ K L V K N L + +E +QE R K + S Sbjct: 556 -----AGEIHDLKDMLDVKERKVNVLQKKIENLQEQLRDKEKQMSS 596
>RB6I2_RAT (Q811U3) RAB6-interacting protein 2 (ERC protein 1) (ERC1)| (CAZ-associated structural protein 2) (CAST2) Length = 948 Score = 33.1 bits (74), Expect = 0.68 Identities = 21/68 (30%), Positives = 33/68 (48%) Frame = +3 Query: 285 RRIENLESVCNHLASKPPEMPEDKEKQLLNSLERIRSIEADLERTKRALQVTVAKQNSLV 464 ++IENL+ E DKEKQ+ + ER++S++AD T AL Sbjct: 550 KKIENLQ-----------EQLRDKEKQMSSLKERVKSLQADTTNTDTALTTLEEALADKE 598 Query: 465 ETLEAVQE 488 T+E ++E Sbjct: 599 RTIERLKE 606 Score = 29.6 bits (65), Expect = 7.5 Identities = 25/106 (23%), Positives = 41/106 (38%) Frame = +3 Query: 204 HPSIMPVPAAEKPQPRTISADDMSACLRRIENLESVCNHLASKPPEMPEDKEKQLLNSLE 383 H ++ K Q I ++ A R+E E++ N + +M E+K Q Sbjct: 474 HIEVLKESLTAKEQRAAILQTEVDALRLRLEEKETMLNKKTKQIQDMAEEKGTQ------ 527 Query: 384 RIRSIEADLERTKRALQVTVAKQNSLVETLEAVQESSRVKRRLFCS 521 ++ K L V K N L + +E +QE R K + S Sbjct: 528 -----AGEIHDLKDMLDVKERKVNVLQKKIENLQEQLRDKEKQMSS 568
>RB6I2_HUMAN (Q8IUD2) RAB6-interacting protein 2 (ERC protein 1)| Length = 1116 Score = 33.1 bits (74), Expect = 0.68 Identities = 21/68 (30%), Positives = 33/68 (48%) Frame = +3 Query: 285 RRIENLESVCNHLASKPPEMPEDKEKQLLNSLERIRSIEADLERTKRALQVTVAKQNSLV 464 ++IENL+ E DKEKQ+ + ER++S++AD T AL Sbjct: 578 KKIENLQ-----------EQLRDKEKQMSSLKERVKSLQADTTNTDTALTTLEEALAEKE 626 Query: 465 ETLEAVQE 488 T+E ++E Sbjct: 627 RTIERLKE 634 Score = 29.6 bits (65), Expect = 7.5 Identities = 25/106 (23%), Positives = 41/106 (38%) Frame = +3 Query: 204 HPSIMPVPAAEKPQPRTISADDMSACLRRIENLESVCNHLASKPPEMPEDKEKQLLNSLE 383 H ++ K Q I ++ A R+E E++ N + +M E+K Q Sbjct: 502 HIEVLKESLTAKEQRAAILQTEVDALRLRLEEKETMLNKKTKQIQDMAEEKGTQ------ 555 Query: 384 RIRSIEADLERTKRALQVTVAKQNSLVETLEAVQESSRVKRRLFCS 521 ++ K L V K N L + +E +QE R K + S Sbjct: 556 -----AGEIHDLKDMLDVKERKVNVLQKKIENLQEQLRDKEKQMSS 596
>ERC2_RAT (Q8K3M6) ERC protein 2 (CAZ-associated structural protein 1)| (CAST1) (Cast) (Cytomatrix protein p110) Length = 957 Score = 33.1 bits (74), Expect = 0.68 Identities = 20/71 (28%), Positives = 38/71 (53%), Gaps = 3/71 (4%) Frame = +3 Query: 285 RRIENLESVCNHLASKPPEMPEDKEKQLLNSLERIRSIEADLERTKRA---LQVTVAKQN 455 ++IENL+ E DK+KQL N +R++S++ D T A L+ ++++ Sbjct: 546 KKIENLQ-----------EQLRDKDKQLTNLKDRVKSLQTDSSNTDTALATLEEALSEKE 594 Query: 456 SLVETLEAVQE 488 ++E L+ +E Sbjct: 595 RIIERLKEQRE 605 Score = 30.4 bits (67), Expect = 4.4 Identities = 28/113 (24%), Positives = 45/113 (39%) Frame = +3 Query: 204 HPSIMPVPAAEKPQPRTISADDMSACLRRIENLESVCNHLASKPPEMPEDKEKQLLNSLE 383 H ++ K Q I ++ A R+E ES N K KQL + E Sbjct: 470 HIEVLKESLTAKEQRAAILQTEVDALRLRLEEKESFLN-----------KKTKQLQDLTE 518 Query: 384 RIRSIEADLERTKRALQVTVAKQNSLVETLEAVQESSRVKRRLFCS*DDLICS 542 ++ ++ K L+V K N L + +E +QE R K + + D + S Sbjct: 519 EKGTLAGEIRDMKDMLEVKERKINVLQKKIENLQEQLRDKDKQLTNLKDRVKS 571
>ERC2_MOUSE (Q6PH08) ERC protein 2 (CAZ-associated structural protein 1)| (CAST1) Length = 957 Score = 33.1 bits (74), Expect = 0.68 Identities = 20/71 (28%), Positives = 38/71 (53%), Gaps = 3/71 (4%) Frame = +3 Query: 285 RRIENLESVCNHLASKPPEMPEDKEKQLLNSLERIRSIEADLERTKRA---LQVTVAKQN 455 ++IENL+ E DK+KQL N +R++S++ D T A L+ ++++ Sbjct: 546 KKIENLQ-----------EQLRDKDKQLTNLKDRVKSLQTDSSNTDTALATLEEALSEKE 594 Query: 456 SLVETLEAVQE 488 ++E L+ +E Sbjct: 595 RIIERLKEQRE 605 Score = 30.4 bits (67), Expect = 4.4 Identities = 28/113 (24%), Positives = 45/113 (39%) Frame = +3 Query: 204 HPSIMPVPAAEKPQPRTISADDMSACLRRIENLESVCNHLASKPPEMPEDKEKQLLNSLE 383 H ++ K Q I ++ A R+E ES N K KQL + E Sbjct: 470 HIEVLKESLTAKEQRAAILQTEVDALRLRLEEKESFLN-----------KKTKQLQDLTE 518 Query: 384 RIRSIEADLERTKRALQVTVAKQNSLVETLEAVQESSRVKRRLFCS*DDLICS 542 ++ ++ K L+V K N L + +E +QE R K + + D + S Sbjct: 519 EKGTLAGEIRDMKDMLEVKERKINVLQKKIENLQEQLRDKDKQLTNLKDRVKS 571
>ERC2_HUMAN (O15083) ERC protein 2| Length = 957 Score = 33.1 bits (74), Expect = 0.68 Identities = 20/71 (28%), Positives = 38/71 (53%), Gaps = 3/71 (4%) Frame = +3 Query: 285 RRIENLESVCNHLASKPPEMPEDKEKQLLNSLERIRSIEADLERTKRA---LQVTVAKQN 455 ++IENL+ E DK+KQL N +R++S++ D T A L+ ++++ Sbjct: 546 KKIENLQ-----------EQLRDKDKQLTNLKDRVKSLQTDSSNTDTALATLEEALSEKE 594 Query: 456 SLVETLEAVQE 488 ++E L+ +E Sbjct: 595 RIIERLKEQRE 605 Score = 30.4 bits (67), Expect = 4.4 Identities = 28/113 (24%), Positives = 45/113 (39%) Frame = +3 Query: 204 HPSIMPVPAAEKPQPRTISADDMSACLRRIENLESVCNHLASKPPEMPEDKEKQLLNSLE 383 H ++ K Q I ++ A R+E ES N K KQL + E Sbjct: 470 HIEVLKESLTAKEQRAAILQTEVDALRLRLEEKESFLN-----------KKTKQLQDLTE 518 Query: 384 RIRSIEADLERTKRALQVTVAKQNSLVETLEAVQESSRVKRRLFCS*DDLICS 542 ++ ++ K L+V K N L + +E +QE R K + + D + S Sbjct: 519 EKGTLAGEIRDMKDMLEVKERKINVLQKKIENLQEQLRDKDKQLTNLKDRVKS 571
>CLP_TRYBB (P31543) Heat shock protein 100 (CLP protein)| Length = 868 Score = 32.7 bits (73), Expect = 0.88 Identities = 20/66 (30%), Positives = 35/66 (53%) Frame = +3 Query: 291 IENLESVCNHLASKPPEMPEDKEKQLLNSLERIRSIEADLERTKRALQVTVAKQNSLVET 470 I+ LE L + + DKE S ER++ ++AD++R + LQ V+K N + Sbjct: 410 IDILERKKRQLEIEAKALERDKEAA---SRERLKLVKADIQRVEEELQPLVSKYNDERQR 466 Query: 471 LEAVQE 488 ++ +QE Sbjct: 467 IDELQE 472
>SAS10_HUMAN (Q9NQZ2) Something about silencing protein 10 (Disrupter of| silencing SAS10) (Charged amino acid-rich leucine zipper 1) Length = 479 Score = 32.3 bits (72), Expect = 1.2 Identities = 28/102 (27%), Positives = 48/102 (47%), Gaps = 3/102 (2%) Frame = +3 Query: 213 IMPVPAAEKPQPRTISADDMSACLRRIENLESVCNHLAS-KPPEMPEDKEKQLLNSLERI 389 ++P + KP+P+++S +AC + +S + A K + ED++K L E Sbjct: 337 LIPKAKSTKPKPKSVSKTSAAACAVTDLSDDSDFDEKAKLKYYKEIEDRQK-LKRKKEEN 395 Query: 390 RSIEADLE--RTKRALQVTVAKQNSLVETLEAVQESSRVKRR 509 + E LE KRA+ +AK L + + + RVK R Sbjct: 396 STEEQALEDQNAKRAITYQIAKNRGLTPRRKKIDRNPRVKHR 437
>ICIA_PSEAE (Q9HW38) Chromosome initiation inhibitor (OriC replication| inhibitor) Length = 300 Score = 32.0 bits (71), Expect = 1.5 Identities = 18/50 (36%), Positives = 30/50 (60%), Gaps = 2/50 (4%) Frame = +3 Query: 273 SACLRRIENLESVCNH--LASKPPEMPEDKEKQLLNSLERIRSIEADLER 416 SA +RI+ LE+ L + P P D ++LLN ++++R +E DL+R Sbjct: 33 SAVSQRIKLLEARVGQPVLVRETPPHPTDLGRRLLNHVQQVRLLEGDLQR 82
>Y066_NPVAC (P41467) Hypothetical 94.0 kDa protein in POL-LEF3 intergenic| region Length = 808 Score = 31.6 bits (70), Expect = 2.0 Identities = 23/67 (34%), Positives = 35/67 (52%), Gaps = 1/67 (1%) Frame = +3 Query: 288 RIENLESVCNHLASKPPEMPEDKEKQLLNSLERIRSIEADLERTKRALQVTVAK-QNSLV 464 R+E L+S + L K E+ EDK + E +R I+ LER+ + L TV K ++ Sbjct: 338 RVETLQSQYDELDLKYKEIFEDKSEFAQQKSENVRKIK-QLERSNKELNDTVQKLRDENA 396 Query: 465 ETLEAVQ 485 E L +Q Sbjct: 397 ERLSEIQ 403
>GOGA4_HUMAN (Q13439) Golgin subfamily A member 4 (Trans-Golgi p230) (256 kDa| golgin) (Golgin-245) (Protein 72.1) Length = 2230 Score = 31.2 bits (69), Expect = 2.6 Identities = 16/70 (22%), Positives = 33/70 (47%) Frame = +3 Query: 291 IENLESVCNHLASKPPEMPEDKEKQLLNSLERIRSIEADLERTKRALQVTVAKQNSLVET 470 I L S + ++ E+ E KEK + E + + ++T+ A + A+ + ++T Sbjct: 384 IAQLRSRIKQMTTQGEELREQKEKSERAAFEELEKALSTAQKTEEARRKLKAEMDEQIKT 443 Query: 471 LEAVQESSRV 500 +E E R+ Sbjct: 444 IEKTSEEERI 453
>ZN238_HUMAN (Q99592) Zinc finger protein 238 (Transcriptional repressor RP58)| (58 kDa repressor protein) (Zinc finger protein C2H2-171) (Translin-associated zinc finger protein 1) (TAZ-1) (Zinc finger and BTB domain-containing protein 18) Length = 522 Score = 30.8 bits (68), Expect = 3.4 Identities = 15/52 (28%), Positives = 27/52 (51%) Frame = +3 Query: 252 TISADDMSACLRRIENLESVCNHLASKPPEMPEDKEKQLLNSLERIRSIEAD 407 T +D S+C ++E+L +H+A P ++ E + LN L R + A+ Sbjct: 128 TKKEEDASSCSDKVESLSDGSSHIAGDLPSDEDEGEDEKLNILPSKRDLAAE 179
>MYSP_SCHMA (P06198) Paramyosin| Length = 866 Score = 30.8 bits (68), Expect = 3.4 Identities = 24/83 (28%), Positives = 40/83 (48%), Gaps = 7/83 (8%) Frame = +3 Query: 285 RRIENLESVCNH------LASKPPEMPEDKEKQLLNSLERIRSIEADLERTKRALQVTVA 446 +R+++LE+ + A ++ E K QL N +E IRS +LER ++ + + Sbjct: 565 QRVKDLETFLDEERRLREAAENNLQITEHKRLQLANEIEEIRSTLENLERLRKHAETELE 624 Query: 447 KQNSLVETLE-AVQESSRVKRRL 512 + S V L V + KRRL Sbjct: 625 EAQSRVSELTIQVNTLTNDKRRL 647
>MYH3_HUMAN (P11055) Myosin heavy chain, fast skeletal muscle, embryonic (Muscle| embryonic myosin heavy chain) (SMHCE) Length = 1940 Score = 30.8 bits (68), Expect = 3.4 Identities = 26/86 (30%), Positives = 45/86 (52%), Gaps = 2/86 (2%) Frame = +3 Query: 264 DDMSACLRRIENLESVCNHLASKPPEMPEDKEKQLLNSLERIRSIEADLERTKRALQ--V 437 DD+ A ++ +L N SK + ED E +SLE+ + + DLER KR L+ + Sbjct: 1009 DDLQAEEDKVNSL----NKTKSKLEQQVEDLE----SSLEQEKKLRVDLERNKRKLEGDL 1060 Query: 438 TVAKQNSLVETLEAVQESSRVKRRLF 515 +A+++ L + Q R+K++ F Sbjct: 1061 KLAQESILDLENDKQQLDERLKKKDF 1086
>MYSA_DROME (P05661) Myosin heavy chain, muscle| Length = 1962 Score = 30.8 bits (68), Expect = 3.4 Identities = 23/74 (31%), Positives = 37/74 (50%) Frame = +3 Query: 291 IENLESVCNHLASKPPEMPEDKEKQLLNSLERIRSIEADLERTKRALQVTVAKQNSLVET 470 ++ E NHL +K E +L +SLER + + D+E++KR + + L T Sbjct: 1009 LQAAEDKINHL-NKVKAKLEQTLDELEDSLEREKKVRGDVEKSKRKV------EGDLKLT 1061 Query: 471 LEAVQESSRVKRRL 512 EAV + R K+ L Sbjct: 1062 QEAVADLERNKKEL 1075
>CLPB_DESVH (Q72AW6) Chaperone clpB| Length = 865 Score = 30.4 bits (67), Expect = 4.4 Identities = 16/53 (30%), Positives = 31/53 (58%) Frame = +3 Query: 276 ACLRRIENLESVCNHLASKPPEMPEDKEKQLLNSLERIRSIEADLERTKRALQ 434 A R+E LE+ L ++ + E++ S++ +RSI+ D+ERT+ A++ Sbjct: 441 ASRERLERLENELADLRAEQTALLSQWEREK-GSIDHVRSIKEDIERTRHAIE 492
>LMNB1_RAT (P70615) Lamin-B1| Length = 586 Score = 30.4 bits (67), Expect = 4.4 Identities = 19/70 (27%), Positives = 33/70 (47%), Gaps = 3/70 (4%) Frame = +3 Query: 267 DMSACLRRIENLESVCNHLASKPPEMPEDKEKQLLNSLERIRSIEADLER---TKRALQV 437 D ACL RI+ LE + M DKE+++ ++++ D E+ K AL + Sbjct: 312 DSRACLERIQELEDMLAKERDNSRRMLSDKEREMAEIRDQMQQQLNDYEQLLDVKLALDM 371 Query: 438 TVAKQNSLVE 467 ++ L+E Sbjct: 372 EISAYRKLLE 381
>SMC4_SCHPO (P41004) Structural maintenance of chromosome 4 (Chromosome| segregation protein cut3) (Cell untimely torn protein 3) Length = 1324 Score = 30.4 bits (67), Expect = 4.4 Identities = 20/83 (24%), Positives = 41/83 (49%) Frame = +3 Query: 243 QPRTISADDMSACLRRIENLESVCNHLASKPPEMPEDKEKQLLNSLERIRSIEADLERTK 422 Q +S DD+ L+ E + N + E+K+K + +LE+I + ++ + + Sbjct: 492 QQEELSLDDIRKSLQG--KTEGISNAI--------EEKQKAMAPALEKINQLTSEKQILQ 541 Query: 423 RALQVTVAKQNSLVETLEAVQES 491 L + + K+N L+ +E+ Q S Sbjct: 542 VELDMLLNKENDLINDVESSQSS 564
>PLVAP_HUMAN (Q9BX97) Plasmalemma vesicle-associated protein (Plasmalemma| vesicle protein 1) (PV-1) (Fenestrated-endothelial linked structure protein) Length = 442 Score = 30.4 bits (67), Expect = 4.4 Identities = 16/77 (20%), Positives = 33/77 (42%) Frame = +3 Query: 291 IENLESVCNHLASKPPEMPEDKEKQLLNSLERIRSIEADLERTKRALQVTVAKQNSLVET 470 + ++ C+H+ S E+ + L +ER+ +DL+R K Q + + Sbjct: 265 LASIRRACDHMPSLMSSKVEELARSLRADIERVARENSDLQRQKLEAQQGLRASQEAKQK 324 Query: 471 LEAVQESSRVKRRLFCS 521 +E ++ K + CS Sbjct: 325 VEKEAQAREAKLQAECS 341
>ZN238_RAT (Q9JKY3) Zinc finger protein 238 (Transcriptional repressor RP58)| (58 kDa repressor protein) (rRP58) Length = 522 Score = 30.0 bits (66), Expect = 5.7 Identities = 15/52 (28%), Positives = 26/52 (50%) Frame = +3 Query: 252 TISADDMSACLRRIENLESVCNHLASKPPEMPEDKEKQLLNSLERIRSIEAD 407 T +D S+C ++E+L +H+A P ++ E LN L R + A+ Sbjct: 128 TKKEEDASSCSDKVESLSDGSSHMAGDLPSDEDEGEDDKLNILPSKRDLAAE 179
>ZN238_MOUSE (Q9WUK6) Zinc finger protein 238 (Zfp-238) (Transcriptional| repressor RP58) (58 kDa repressor protein) Length = 522 Score = 30.0 bits (66), Expect = 5.7 Identities = 15/52 (28%), Positives = 26/52 (50%) Frame = +3 Query: 252 TISADDMSACLRRIENLESVCNHLASKPPEMPEDKEKQLLNSLERIRSIEAD 407 T +D S+C ++E+L +H+A P ++ E LN L R + A+ Sbjct: 128 TKKEEDASSCSDKVESLSDGSSHMAGDLPSDEDEGEDDKLNILPSKRDLAAE 179
>DYNA_NEUCR (Q01397) Dynactin, 150 kDa isoform (150 kDa dynein-associated| polypeptide) (DP-150) (DAP-150) (p150-glued) Length = 1300 Score = 29.6 bits (65), Expect = 7.5 Identities = 22/77 (28%), Positives = 40/77 (51%) Frame = +3 Query: 285 RRIENLESVCNHLASKPPEMPEDKEKQLLNSLERIRSIEADLERTKRALQVTVAKQNSLV 464 + IE+L++ L K ED+EK LNSLE++++ ER + LQ+ Q + Sbjct: 262 KEIEDLKAKLKVLEKK---RMEDREK--LNSLEKVKAERDKFERIIQTLQIKYQPQQQEI 316 Query: 465 ETLEAVQESSRVKRRLF 515 + L+ ++ + RL+ Sbjct: 317 QDLK--RQLKEAENRLY 331
>MUTL_RICCN (Q92FW6) DNA mismatch repair protein mutL| Length = 610 Score = 29.6 bits (65), Expect = 7.5 Identities = 14/26 (53%), Positives = 19/26 (73%), Gaps = 2/26 (7%) Frame = +3 Query: 249 RTISADDMSACLRRIEN--LESVCNH 320 R +SAD+M+A LR++EN L CNH Sbjct: 566 RKLSADEMNALLRQMENTPLSGQCNH 591
>RNE_ECOLI (P21513) Ribonuclease E (EC 3.1.4.-) (RNase E)| Length = 1061 Score = 29.6 bits (65), Expect = 7.5 Identities = 24/104 (23%), Positives = 44/104 (42%) Frame = +3 Query: 192 LENAHPSIMPVPAAEKPQPRTISADDMSACLRRIENLESVCNHLASKPPEMPEDKEKQLL 371 +E HP + + AA QP+ I+ D++ E E V P+++ + Sbjct: 910 VETTHPEV--IAAAVTEQPQVITESDVAVAQEVAEQAEPVVE---------PQEETADIE 958 Query: 372 NSLERIRSIEADLERTKRALQVTVAKQNSLVETLEAVQESSRVK 503 +E + A+ E + VA+ + VET+ AV+ V+ Sbjct: 959 EVVETAEVVVAEPEVVAQPAAPVVAEVAAEVETVAAVEPEVTVE 1002
>MYSP_SARSC (Q9BMM8) Paramyosin| Length = 876 Score = 29.6 bits (65), Expect = 7.5 Identities = 17/48 (35%), Positives = 24/48 (50%) Frame = +3 Query: 348 EDKEKQLLNSLERIRSIEADLERTKRALQVTVAKQNSLVETLEAVQES 491 EDK + L + LE R + +ER K LQ+ V + +E E ES Sbjct: 36 EDKIRLLSDDLESEREMRQRIEREKAELQIQVMSLSERLEEAEGSSES 83
>MYH3_RAT (P12847) Myosin heavy chain, fast skeletal muscle, embryonic| Length = 1940 Score = 29.6 bits (65), Expect = 7.5 Identities = 25/86 (29%), Positives = 45/86 (52%), Gaps = 2/86 (2%) Frame = +3 Query: 264 DDMSACLRRIENLESVCNHLASKPPEMPEDKEKQLLNSLERIRSIEADLERTKRALQ--V 437 DD+ A ++ +L L SK + +D E +SLE+ + + DLER KR L+ + Sbjct: 1009 DDLQAEEDKVNSLSK----LKSKLEQQVDDLE----SSLEQEKKLRVDLERNKRKLEGDL 1060 Query: 438 TVAKQNSLVETLEAVQESSRVKRRLF 515 +A+++ L + Q R+K++ F Sbjct: 1061 KLAQESILDLENDKQQLDERLKKKDF 1086
>CCHCR_MOUSE (Q8K2I2) Coiled-coil alpha-helical rod protein 1 (Alpha helical| coiled-coil rod protein) Length = 770 Score = 29.6 bits (65), Expect = 7.5 Identities = 24/83 (28%), Positives = 42/83 (50%), Gaps = 2/83 (2%) Frame = +3 Query: 264 DDMSACLRRIENLESVCNH--LASKPPEMPEDKEKQLLNSLERIRSIEADLERTKRALQV 437 +++ A + +E+L L P + E + K+LL++L+ ++ ADL+ T LQV Sbjct: 237 EELEAQVTLVESLRKYVGEQVLPEFPSQEWELERKELLDTLKHLKEDRADLQATVELLQV 296 Query: 438 TVAKQNSLVETLEAVQESSRVKR 506 V SL L A+QE ++ Sbjct: 297 RV---QSLTHML-ALQEEELTRK 315
>MYH13_HUMAN (Q9UKX3) Myosin-13 (Myosin heavy chain, skeletal muscle, extraocular)| (MyHC-eo) Length = 1938 Score = 29.3 bits (64), Expect = 9.8 Identities = 17/55 (30%), Positives = 28/55 (50%) Frame = +3 Query: 348 EDKEKQLLNSLERIRSIEADLERTKRALQVTVAKQNSLVETLEAVQESSRVKRRL 512 E + L SLE+ + + ADLER KR L+ + + LE E +++ +L Sbjct: 1032 EQQTDDLEGSLEQEKKLRADLERAKRKLEGDLKMSQESIMDLE--NEKQQIEEKL 1084
>IF4G3_HUMAN (O43432) Eukaryotic translation initiation factor 4 gamma 3| (eIF-4-gamma 3) (eIF-4G 3) (eIF4G 3) (eIF-4-gamma II) (eIF4GII) Length = 1585 Score = 29.3 bits (64), Expect = 9.8 Identities = 20/61 (32%), Positives = 31/61 (50%), Gaps = 2/61 (3%) Frame = -2 Query: 474 PESPPTNSASPPSLAVLFWSSPGQPRWI*CAPTSLVIVS--LCPRASLVACLQDDCKQIQ 301 P +PPT ASPP V+ P + +P++ + V L S+ CL +D K+IQ Sbjct: 415 PPTPPTPPASPPHTPVIV---PAAATTV-SSPSAAITVQRVLEEDESIRTCLSEDAKEIQ 470 Query: 300 D 298 + Sbjct: 471 N 471
>AMOL2_HUMAN (Q9Y2J4) Angiomotin-like protein 2 (Leman coiled-coil protein)| (LCCP) Length = 779 Score = 29.3 bits (64), Expect = 9.8 Identities = 29/109 (26%), Positives = 46/109 (42%), Gaps = 11/109 (10%) Frame = +3 Query: 183 VRRLENAHPSIMPVPAAEKPQPRTISADDMSACLRRI--------ENLESVCNHLASKPP 338 ++RL AH S+ + + +T+ + M + +RR+ E LES LASK Sbjct: 352 IQRLSEAHESLTRASSKREALEKTMR-NKMDSEMRRLQDFNRDLRERLESANRRLASKTQ 410 Query: 339 EM---PEDKEKQLLNSLERIRSIEADLERTKRALQVTVAKQNSLVETLE 476 E +D +LL + + LER L+ + Q E LE Sbjct: 411 EAQAGSQDMVAKLLAQSYEQQQEQEKLEREMALLRGAIEDQRRRAELLE 459 Database: uniprot_sprot.fasta Posted date: May 25, 2006 5:36 PM Number of letters in database: 80,573,946 Number of sequences in database: 219,361 Lambda K H 0.318 0.135 0.401 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 87,854,801 Number of Sequences: 219361 Number of extensions: 1703454 Number of successful extensions: 5858 Number of sequences better than 10.0: 33 Number of HSP's better than 10.0 without gapping: 5542 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 5854 length of database: 80,573,946 effective HSP length: 107 effective length of database: 57,102,319 effective search space used: 5653129581 frameshift window, decay const: 50, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits)
