ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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| Clone Name | bags7o12 |
|---|---|
| Clone Library Name | barley_pub |
>IF37_ARATH (P56820) Eukaryotic translation initiation factor 3 subunit 7| (eIF-3 zeta) (eIF3d) (p66) Length = 591 Score = 295 bits (756), Expect = 5e-80 Identities = 145/201 (72%), Positives = 171/201 (85%) Frame = +3 Query: 6 HHTGPSAATSQSSAKPSVDIQPDWTILEQIPFANFTKLSFAVNDQPEDLLVCGAVDSYDR 185 HH AA +SS VDIQP+W +LEQIPF+ F+KLS+ V + PEDLL+CG ++ Y+R Sbjct: 172 HHQRREAAAFKSS----VDIQPEWNMLEQIPFSTFSKLSYTVQE-PEDLLLCGGLEYYNR 226 Query: 186 AYDRVNPKTARRLERFKNRQFFKITTTDDPIIRRLAEEDKATVFATDAILAALMCTPRSI 365 +DR+ PK RRLERFKNR FFK+TT+DDP+IRRLA+EDKATVFATDAILAALMC PRS+ Sbjct: 227 LFDRITPKNERRLERFKNRNFFKVTTSDDPVIRRLAKEDKATVFATDAILAALMCAPRSV 286 Query: 366 LSWDIVVQRVGNKLFFDKREGSQLDLLTVNETAQEQLPENKDDINSAPALAVEATYINQN 545 SWDIV+QRVGNKLFFDKR+GSQLDLL+V+ET+QE LPE+KDDINSA +L VEA YINQN Sbjct: 287 YSWDIVIQRVGNKLFFDKRDGSQLDLLSVHETSQEPLPESKDDINSAHSLGVEAAYINQN 346 Query: 546 FSQQVLVRDGEKVTFDEPNPF 608 FSQQVLVRDG+K TFDE NPF Sbjct: 347 FSQQVLVRDGKKETFDEANPF 367
>IF37_HUMAN (O15371) Eukaryotic translation initiation factor 3 subunit 7| (eIF-3 zeta) (eIF3 p66) (eIF3d) Length = 548 Score = 185 bits (470), Expect = 8e-47 Identities = 97/194 (50%), Positives = 129/194 (66%), Gaps = 3/194 (1%) Frame = +3 Query: 36 QSSAKP---SVDIQPDWTILEQIPFANFTKLSFAVNDQPEDLLVCGAVDSYDRAYDRVNP 206 Q S KP SV+++ DW + E++ F K+ + +P+D+ CGA++ YD+A+DR+ Sbjct: 152 QKSQKPRDSSVEVRSDWEVKEEMDFPQLMKMRYLEVSEPQDIECCGALEYYDKAFDRITT 211 Query: 207 KTARRLERFKNRQFFKITTTDDPIIRRLAEEDKATVFATDAILAALMCTPRSILSWDIVV 386 ++ + L K R F +TTTDDP+IR+LA+ + VFATDAILA LM RS+ SWDIVV Sbjct: 212 RSEKPLRSIK-RIFHTVTTTDDPVIRKLAKT-QGNVFATDAILATLMSCTRSVYSWDIVV 269 Query: 387 QRVGNKLFFDKREGSQLDLLTVNETAQEQLPENKDDINSAPALAVEATYINQNFSQQVLV 566 QRVG+KLFFDKR+ S DLLTV+ETA E + + NS LA+EATYIN NFSQQ L Sbjct: 270 QRVGSKLFFDKRDNSDFDLLTVSETANEPPQDEGNSFNSPRNLAMEATYINHNFSQQCLR 329 Query: 567 RDGEKVTFDEPNPF 608 E+ F PNPF Sbjct: 330 MGKERYNFPNPNPF 343
>IF37_MOUSE (O70194) Eukaryotic translation initiation factor 3 subunit 7| (eIF-3 zeta) (eIF3 p66) (eIF3d) Length = 547 Score = 161 bits (408), Expect = 1e-39 Identities = 92/194 (47%), Positives = 120/194 (61%), Gaps = 3/194 (1%) Frame = +3 Query: 36 QSSAKP---SVDIQPDWTILEQIPFANFTKLSFAVNDQPEDLLVCGAVDSYDRAYDRVNP 206 Q S KP SV+++ DW + E++ F K+ + +P+D+ CG + + +P Sbjct: 152 QKSQKPRDSSVEVRSDWEVKEEMDFPQLMKMRYLEVSEPQDIECCGPWSTTTKPLT-ASP 210 Query: 207 KTARRLERFKNRQFFKITTTDDPIIRRLAEEDKATVFATDAILAALMCTPRSILSWDIVV 386 + R K R F +TTTDDP+IR+LA+ + VFATDAILA LM RS+ SWDIVV Sbjct: 211 QGVRSPCDIK-RIFHTVTTTDDPVIRKLAKT-QGNVFATDAILATLMSCTRSVYSWDIVV 268 Query: 387 QRVGNKLFFDKREGSQLDLLTVNETAQEQLPENKDDINSAPALAVEATYINQNFSQQVLV 566 QRVG+KLFFDKR+ S DLLTV+ETA E + + NS LA+EATYIN NFSQQ L Sbjct: 269 QRVGSKLFFDKRDNSDFDLLTVSETANEPPQDEGNSFNSPRNLAMEATYINHNFSQQCLR 328 Query: 567 RDGEKVTFDEPNPF 608 E+ F PNPF Sbjct: 329 MGRERYNFPNPNPF 342
>IF37_SCHPO (O94236) Eukaryotic translation initiation factor 3 subunit 7| homolog (Microtubule-destabilizing protein moe1) Length = 567 Score = 147 bits (372), Expect = 2e-35 Identities = 79/188 (42%), Positives = 118/188 (62%), Gaps = 3/188 (1%) Frame = +3 Query: 54 SVDIQPDWTILEQIPFANFTKLSFAVNDQPEDLLVCGAVDSYDRAYDRVNPKTARRLERF 233 SV + DW +L+++ F++ +KL+ A P + G + YD+++D+++ K+ + L+ Sbjct: 176 SVTVGDDWQLLDEVEFSHLSKLNLAAA-APVTVDSYGYIYPYDKSFDKIHVKSEKPLQAL 234 Query: 234 KNRQFFKITTTDDPIIRRLAEEDKATVFATDAILAALMCTPRSILSWDIVVQRVGNKLFF 413 +R + TTT+DP+I++LA A +F TD+IL+ LMC+ RS+ WDIV+ KLFF Sbjct: 235 -DRVHYNPTTTEDPVIQKLALNSDANIFITDSILSLLMCSTRSVYPWDIVITHQSGKLFF 293 Query: 414 DKREGSQLDLLTVNETAQEQL--PENKDDINSAPALAVEATYINQNFSQQVL-VRDGEKV 584 DKREG D LTVNE A + +N++ +NS AL+VEATYINQNF Q L + EK Sbjct: 294 DKREGGPFDYLTVNENAYDSPMDADNREGVNSPGALSVEATYINQNFCVQALRETEEEKY 353 Query: 585 TFDEPNPF 608 PNPF Sbjct: 354 KLPHPNPF 361
>IF37_CAEEL (P30642) Putative eukaryotic translation initiation factor 3| subunit 7 (eIF-3 zeta) (eIF3d) Length = 570 Score = 141 bits (356), Expect = 1e-33 Identities = 80/186 (43%), Positives = 116/186 (62%), Gaps = 6/186 (3%) Frame = +3 Query: 51 PSVDIQPDWTILEQIPFANFTKLSFAVNDQPEDL--LVCGAVDSYDRAYDRVNPKTARRL 224 PSV ++P+W +LE++ + F+KL+ +D+ G++ YD+ DRV+ K + L Sbjct: 177 PSVQVRPEWVVLEEMNLSAFSKLALPNIPGGDDIGDHQYGSLQYYDKTIDRVSVKNSIPL 236 Query: 225 ERFKNRQFFKITTTDDPIIRRLAEEDKATVFATDAILAALMCTPRSILSWDIVVQRVGNK 404 +R F+ +TTT+DP+I+ LA+ VF TD ILA LM PRS+ SWDIV RVG+K Sbjct: 237 QRCAG-VFYNVTTTEDPVIQELAQGGAGNVFGTDIILATLMTAPRSVYSWDIVAYRVGDK 295 Query: 405 LFFDKREG----SQLDLLTVNETAQEQLPENKDDINSAPALAVEATYINQNFSQQVLVRD 572 LFFDKR + ++ LTV+ET+ E + + IN+A LA EA YINQNF +QV+ R+ Sbjct: 296 LFFDKRNTRDILNPVETLTVSETSAEPPSFDGNGINNAKDLATEAFYINQNFRRQVVKRN 355 Query: 573 GEKVTF 590 TF Sbjct: 356 DAGFTF 361
>SYD_LACJO (Q74IX4) Aspartyl-tRNA synthetase (EC 6.1.1.12) (Aspartate--tRNA| ligase) (AspRS) Length = 614 Score = 32.3 bits (72), Expect = 1.1 Identities = 15/62 (24%), Positives = 33/62 (53%) Frame = +3 Query: 360 SILSWDIVVQRVGNKLFFDKREGSQLDLLTVNETAQEQLPENKDDINSAPALAVEATYIN 539 ++ W V+ +GN +F D R+ + + VN+ + E+L E D +N+ + V+ + Sbjct: 21 TLYGWVQRVRNLGNLVFIDLRDREGIVQVVVNKDSGEKLMEIADSLNNEDVIEVKGKVVK 80 Query: 540 QN 545 ++ Sbjct: 81 RS 82
>SPPA_BACSU (O34525) Putative signal peptide peptidase sppA (EC 3.4.21.-)| Length = 335 Score = 32.0 bits (71), Expect = 1.4 Identities = 17/56 (30%), Positives = 28/56 (50%) Frame = +3 Query: 408 FFDKREGSQLDLLTVNETAQEQLPENKDDINSAPALAVEATYINQNFSQQVLVRDG 575 FF+ +G+Q DL ++ + +QE+ EN + L V T + S +L DG Sbjct: 28 FFESVKGAQTDLTSLTDESQEKTLENGSPSSKIAVLEVSGTIQDNGDSSSLLGADG 83
>Y198_RICPR (Q9ZDW7) Hypothetical protein RP198 precursor| Length = 355 Score = 30.8 bits (68), Expect = 3.2 Identities = 18/56 (32%), Positives = 31/56 (55%), Gaps = 6/56 (10%) Frame = +3 Query: 354 PRSILSWD------IVVQRVGNKLFFDKREGSQLDLLTVNETAQEQLPENKDDINS 503 P+ ILS++ IV + + N + F K+ + +N+T+ EQL +K+D NS Sbjct: 255 PKGILSFELENYNSIVDKLLPNSILFSKKTIKTIIAKAMNKTSDEQLNTDKNDTNS 310
>CG028_MOUSE (Q8C1Y8) Protein C7orf28 homolog| Length = 480 Score = 30.4 bits (67), Expect = 4.2 Identities = 19/69 (27%), Positives = 34/69 (49%), Gaps = 8/69 (11%) Frame = +3 Query: 132 NDQPEDLLVCGAVDSYDRAYDRVNPKTARRLERFKNRQFFK--------ITTTDDPIIRR 287 N++ ++ +C A+ + R + P A+ L KNRQFF + +PII + Sbjct: 54 NEKIRNVGLCEAIVQFTRTFSPSKP--AKSLHTQKNRQFFNEPEENFWMVMVVRNPIIEK 111 Query: 288 LAEEDKATV 314 +++ KA V Sbjct: 112 QSKDGKAVV 120
>RSC1_YEAST (P53236) Chromatin structure remodeling complex protein RSC1| (Remodel the structure of chromatin complex subunit 1) Length = 928 Score = 30.0 bits (66), Expect = 5.5 Identities = 25/83 (30%), Positives = 35/83 (42%) Frame = +3 Query: 348 CTPRSILSWDIVVQRVGNKLFFDKREGSQLDLLTVNETAQEQLPENKDDINSAPALAVEA 527 C P + D V + FF K DLL N T +++PE + +AP L V A Sbjct: 491 CLPEELRDQDEPTIPVNGRKFF-KYPSPIADLLPANATLNDKVPEPTEGAPTAPPL-VGA 548 Query: 528 TYINQNFSQQVLVRDGEKVTFDE 596 Y+ + L GE T D+ Sbjct: 549 VYLGPKLERDDL---GEYSTSDD 568
>EX7L_AGRT5 (Q8UIM4) Probable exodeoxyribonuclease VII large subunit (EC| 3.1.11.6) (Exonuclease VII large subunit) Length = 532 Score = 30.0 bits (66), Expect = 5.5 Identities = 19/61 (31%), Positives = 32/61 (52%) Frame = +3 Query: 162 GAVDSYDRAYDRVNPKTARRLERFKNRQFFKITTTDDPIIRRLAEEDKATVFATDAILAA 341 G VDS+D A + + +LER K R D ++ R+A ++++ + A D IL + Sbjct: 394 GRVDSFDSALRSLPARLLGQLERQKERVVTAARRADTAVLHRMA-QNRSGLAAHDRILQS 452 Query: 342 L 344 L Sbjct: 453 L 453
>POLG_BOVEV (P12915) Genome polyprotein [Contains: Coat protein VP4 (P1A); Coat| protein VP2 (P1B); Coat protein VP3 (P1C); Coat protein VP1 (P1D); Picornain 2A (EC 3.4.22.29) (Core protein P2A); Core protein P2B; Core protein P2C; Core protein P3A; Genome Length = 2174 Score = 30.0 bits (66), Expect = 5.5 Identities = 24/92 (26%), Positives = 41/92 (44%), Gaps = 12/92 (13%) Frame = +3 Query: 246 FFKITTTDDPIIRRLAEEDKATVFATDAILAAL---MCTPRSILSWDIVVQRVGNKLFFD 416 F ++ +T + A EDK +F + +LA+ TP ++ + + +R FFD Sbjct: 1278 FCQMVSTAPFTVPMAALEDKGKLFTSKFVLASTNAGQVTPPTVADYKALQRR----FFFD 1333 Query: 417 ---------KREGSQLDLLTVNETAQEQLPEN 485 KR+G LD+ ET ++ P N Sbjct: 1334 CDIEVQKEYKRDGVTLDVAKATETCEDCSPAN 1365
>GIDA_PROMA (Q7V9J7) tRNA uridine 5-carboxymethylaminomethyl modification| enzyme gidA (Glucose-inhibited division protein A) Length = 667 Score = 29.6 bits (65), Expect = 7.2 Identities = 32/130 (24%), Positives = 56/130 (43%), Gaps = 1/130 (0%) Frame = +3 Query: 222 LERFKNRQFFKITTTDDPIIRRLAEEDKATVFATDAILAALMCTPRSILSWDIVVQRVGN 401 +E+ K R + DPI ++ +E A++ + LA L+ P ++ I + N Sbjct: 493 MEKEKKRLEQQRIKDSDPIALKIEKESGASIKGS-ITLANLLRRPGMHMNNLIRHKLANN 551 Query: 402 KLFFDKREGSQLDLLTVNETAQEQLPENKDDINSAPALAVEATYIN-QNFSQQVLVRDGE 578 L D REG ++D+ ++ L + + AL E Y N + SQ+ E Sbjct: 552 SLPLDVREGVEIDIKYSGYLKRQNLQIEQIKKQNKRALPSEVNYTNIKTLSQEA----RE 607 Query: 579 KVTFDEPNPF 608 K+ +P F Sbjct: 608 KLNATQPKTF 617 Database: uniprot_sprot.fasta Posted date: May 25, 2006 5:36 PM Number of letters in database: 80,573,946 Number of sequences in database: 219,361 Lambda K H 0.318 0.135 0.401 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 49,475,591 Number of Sequences: 219361 Number of extensions: 776714 Number of successful extensions: 3209 Number of sequences better than 10.0: 13 Number of HSP's better than 10.0 without gapping: 3144 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 3201 length of database: 80,573,946 effective HSP length: 107 effective length of database: 57,102,319 effective search space used: 5424720305 frameshift window, decay const: 50, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits)
