ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日:2016年5月1日

Clone Information

BLAST Search Result

Clone Name bags8d07
Clone Library Name barley_pub

No. Definition Score
(bits)
E
Value
1CHIF_DROME (Q9NK54) Protein chiffon 32 1.5
2LPHN3_HUMAN (Q9HAR2) Latrophilin-3 precursor (Calcium-independen... 29 9.7
3LPHN3_BOVIN (O97827) Latrophilin-3 precursor 29 9.7
4LPHN3_MOUSE (Q80TS3) Latrophilin-3 (Lectomedin-3) (Fragment) 29 9.7
5SYA_MYCH2 (Q601M2) Alanyl-tRNA synthetase (EC 6.1.1.7) (Alanine-... 29 9.7
6SYA_MYCHJ (Q4AAD3) Alanyl-tRNA synthetase (EC 6.1.1.7) (Alanine-... 29 9.7
7SYA_MYCH7 (Q4A8G4) Alanyl-tRNA synthetase (EC 6.1.1.7) (Alanine-... 29 9.7

>CHIF_DROME (Q9NK54) Protein chiffon|
          Length = 1711

 Score = 31.6 bits (70), Expect = 1.5
 Identities = 26/91 (28%), Positives = 39/91 (42%), Gaps = 7/91 (7%)
 Frame = +2

Query: 224  AQKGQLGYDVTTCELKVIEGQRD-----FVIQMNDKWNSFSLKKYDKFGLPFGCLKPNSG 388
            ++KG L Y++ TC LK ++  R      FV    DK+   + K+YD   + F  + P   
Sbjct: 1215 SKKGLLEYEMETCALKALDQARQYCNPGFVAWQLDKYLELAGKEYD---IEFDQISPE-- 1269

Query: 389  RSYEELLLCIAEGENSEPEVV--PSTTPPNN 475
                       E E  E  +V  P T PP +
Sbjct: 1270 ----------VESEGREERLVNTPQTPPPTD 1290



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>LPHN3_HUMAN (Q9HAR2) Latrophilin-3 precursor (Calcium-independent|
            alpha-latrotoxin receptor 3) (Lectomedin-3)
          Length = 1447

 Score = 28.9 bits (63), Expect = 9.7
 Identities = 12/38 (31%), Positives = 21/38 (55%)
 Frame = +2

Query: 77   WXQPEGVKIHLYRLGIEQCEHDALKSFACAGQGSPSLL 190
            W   EGV++++  + + + EH   K F   G G P+L+
Sbjct: 944  WMFLEGVQLYIMLVEVFESEHSRRKYFYLVGYGMPALI 981



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>LPHN3_BOVIN (O97827) Latrophilin-3 precursor|
          Length = 1580

 Score = 28.9 bits (63), Expect = 9.7
 Identities = 12/38 (31%), Positives = 21/38 (55%)
 Frame = +2

Query: 77   WXQPEGVKIHLYRLGIEQCEHDALKSFACAGQGSPSLL 190
            W   EGV++++  + + + EH   K F   G G P+L+
Sbjct: 1025 WMFLEGVQLYIMLVEVFESEHSRRKYFYLVGYGMPALI 1062



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>LPHN3_MOUSE (Q80TS3) Latrophilin-3 (Lectomedin-3) (Fragment)|
          Length = 1189

 Score = 28.9 bits (63), Expect = 9.7
 Identities = 12/38 (31%), Positives = 21/38 (55%)
 Frame = +2

Query: 77  WXQPEGVKIHLYRLGIEQCEHDALKSFACAGQGSPSLL 190
           W   EGV++++  + + + EH   K F   G G P+L+
Sbjct: 677 WMFLEGVQLYIMLVEVFESEHSRRKYFYLVGYGMPALI 714



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>SYA_MYCH2 (Q601M2) Alanyl-tRNA synthetase (EC 6.1.1.7) (Alanine--tRNA ligase)|
           (AlaRS)
          Length = 883

 Score = 28.9 bits (63), Expect = 9.7
 Identities = 12/33 (36%), Positives = 23/33 (69%)
 Frame = +2

Query: 188 LDTIILSQWENFAQKGQLGYDVTTCELKVIEGQ 286
           +  IIL++ ENFA+  ++GY++   +LK+ + Q
Sbjct: 352 ISKIILNEEENFAKTLEIGYNLLESQLKINKNQ 384



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>SYA_MYCHJ (Q4AAD3) Alanyl-tRNA synthetase (EC 6.1.1.7) (Alanine--tRNA ligase)|
           (AlaRS)
          Length = 880

 Score = 28.9 bits (63), Expect = 9.7
 Identities = 12/33 (36%), Positives = 23/33 (69%)
 Frame = +2

Query: 188 LDTIILSQWENFAQKGQLGYDVTTCELKVIEGQ 286
           +  IIL++ ENFA+  ++GY++   +LK+ + Q
Sbjct: 349 ISKIILNEEENFAKTLEIGYNLLESQLKINKNQ 381



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>SYA_MYCH7 (Q4A8G4) Alanyl-tRNA synthetase (EC 6.1.1.7) (Alanine--tRNA ligase)|
           (AlaRS)
          Length = 880

 Score = 28.9 bits (63), Expect = 9.7
 Identities = 12/33 (36%), Positives = 23/33 (69%)
 Frame = +2

Query: 188 LDTIILSQWENFAQKGQLGYDVTTCELKVIEGQ 286
           +  IIL++ ENFA+  ++GY++   +LK+ + Q
Sbjct: 349 ISKIILNEEENFAKTLEIGYNLLESQLKINKNQ 381


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.318    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 81,062,250
Number of Sequences: 219361
Number of extensions: 1714508
Number of successful extensions: 3922
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 3833
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 3922
length of database: 80,573,946
effective HSP length: 105
effective length of database: 57,541,041
effective search space used: 4315578075
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
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