ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日:2016年5月1日

Clone Information

BLAST Search Result

Clone Name bags8d06
Clone Library Name barley_pub

No. Definition Score
(bits)
E
Value
1APG_ARATH (P40602) Anter-specific proline-rich protein APG precu... 41 0.002
2PAR1_XENLA (P47749) Proteinase-activated receptor 1 precursor (P... 35 0.22
3APG_BRANA (P40603) Anter-specific proline-rich protein APG (Prot... 33 0.85
4HLT_VIBPA (Q99289) Thermolabile hemolysin precursor (TL) (Lecith... 33 0.85
5RFBE_SHIFL (P37781) Putative O-antigen transporter 31 3.2
6SIF2_YEAST (P38262) SIR4-interacting protein SIF2 30 5.5
7ECM2_HUMAN (O94769) Extracellular matrix protein 2 precursor (Ma... 30 7.2
8MMRN1_HUMAN (Q13201) Multimerin-1 precursor (Endothelial cell mu... 29 9.4
9HBB_LEPPA (P02138) Hemoglobin beta subunit (Hemoglobin beta chai... 29 9.4

>APG_ARATH (P40602) Anter-specific proline-rich protein APG precursor|
          Length = 534

 Score = 41.2 bits (95), Expect = 0.002
 Identities = 17/46 (36%), Positives = 24/46 (52%)
 Frame = +2

Query: 62  GLRHVKTACCGSGKLNAEVMCSHPGTTACPAADHDDYMFWDMLHPT 199
           G    K  CC +G L+A  +C    +  CP  +   Y+FWD +HPT
Sbjct: 470 GFEETKKPCCKTGLLSAGALCKKSTSKICP--NTSSYLFWDGVHPT 513



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>PAR1_XENLA (P47749) Proteinase-activated receptor 1 precursor (PAR-1)|
           (Thrombin receptor)
          Length = 420

 Score = 34.7 bits (78), Expect = 0.22
 Identities = 23/75 (30%), Positives = 36/75 (48%), Gaps = 4/75 (5%)
 Frame = +3

Query: 357 HACMRTRAFAMAVRPLFLRIRCFDSLI*NCQNIL----YIQKQRQY*IISVLFSRYYFVR 524
           ++C +TRA  +AV  L + I CF        N+L    Y+Q+  ++     L+  Y    
Sbjct: 303 NSCKKTRALFLAVVVLCVFIICFGPT-----NVLFLTHYLQEANEF-----LYFAYILSA 352

Query: 525 ATSSISCCVLPFDYY 569
              S+SCC+ P  YY
Sbjct: 353 CVGSVSCCLDPLIYY 367



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>APG_BRANA (P40603) Anter-specific proline-rich protein APG (Protein CEX)|
           (Fragment)
          Length = 449

 Score = 32.7 bits (73), Expect = 0.85
 Identities = 15/46 (32%), Positives = 20/46 (43%)
 Frame = +2

Query: 62  GLRHVKTACCGSGKLNAEVMCSHPGTTACPAADHDDYMFWDMLHPT 199
           G   +K  CC  G     V C     T    ++   Y+FWD LHP+
Sbjct: 387 GFEEIKKPCCKIGLTKGGVFCKE--RTLKNMSNASSYLFWDGLHPS 430



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>HLT_VIBPA (Q99289) Thermolabile hemolysin precursor (TL) (Lecithin-dependent|
           haemolysin) (LDH) (Atypical phospholipase)
           (Phospholipase A2) (Lysophospholipase)
          Length = 418

 Score = 32.7 bits (73), Expect = 0.85
 Identities = 12/34 (35%), Positives = 21/34 (61%)
 Frame = +2

Query: 107 NAEVMCSHPGTTACPAADHDDYMFWDMLHPTHAT 208
           + + M +H   + C A+  + ++FWD+ HPT AT
Sbjct: 365 SVDYMYTHALRSECAASGAEKFVFWDVTHPTTAT 398



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>RFBE_SHIFL (P37781) Putative O-antigen transporter|
          Length = 418

 Score = 30.8 bits (68), Expect = 3.2
 Identities = 21/98 (21%), Positives = 46/98 (46%), Gaps = 4/98 (4%)
 Frame = -3

Query: 519 RNNNVKITHLLSSTASVFECTRCFGSFKLNCQN---ILYVGREGVRPLQMHVCACMHA-C 352
           R+N+ + T ++S++ S      CFG+F L   +   + Y+   GV    + +   + A C
Sbjct: 69  RDNHHERTKVISTSTSFLVLFSCFGAFLLLIFSDGIVNYLKISGVEHSDIQLAFKLLAIC 128

Query: 351 MPSMVYSSATTILIAGDSFLPVTSVAKLTGSPYLGPLP 238
           +P  + +   + ++ GD    + ++ K   S  +  +P
Sbjct: 129 IPLFILNQLWSAILEGDEKFGIVNIQKSISSSCIAGIP 166



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>SIF2_YEAST (P38262) SIR4-interacting protein SIF2|
          Length = 535

 Score = 30.0 bits (66), Expect = 5.5
 Identities = 14/51 (27%), Positives = 23/51 (45%), Gaps = 3/51 (5%)
 Frame = +2

Query: 41  WXNSLVAGLRHVKTACCGSGKLNAEVMC---SHPGTTACPAADHDDYMFWD 184
           W  +++A LRH       SGK   +V C   SH G +     ++ +   W+
Sbjct: 198 WKLTIIAELRHPFALSASSGKTTNQVTCLAWSHDGNSIVTGVENGELRLWN 248



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>ECM2_HUMAN (O94769) Extracellular matrix protein 2 precursor (Matrix|
           glycoprotein SC1/ECM2)
          Length = 699

 Score = 29.6 bits (65), Expect = 7.2
 Identities = 16/37 (43%), Positives = 20/37 (54%)
 Frame = -3

Query: 528 LHVRNNNVKITHLLSSTASVFECTRCFGSFKLNCQNI 418
           LH+ NN +KI  + S T   F C R + S  L  QNI
Sbjct: 665 LHLENNYIKIREIPSYT---FSCIRSYSSIVLKPQNI 698



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>MMRN1_HUMAN (Q13201) Multimerin-1 precursor (Endothelial cell multimerin 1)|
            (EMILIN-4) (Elastin microfibril interface located protein
            4) (Elastin microfibril interfacer 4)
          Length = 1228

 Score = 29.3 bits (64), Expect = 9.4
 Identities = 14/44 (31%), Positives = 23/44 (52%)
 Frame = +2

Query: 266  VNFATLVTGKNESPAIKMVVADE*TMDGMHACMHAHTCICNGRT 397
            VN  T++ G+ +     ++  +E +    H C +  TCI NGRT
Sbjct: 1019 VNLTTVLIGRTQRNTDNIIYPEEYSSCSRHPCQNGGTCI-NGRT 1061



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>HBB_LEPPA (P02138) Hemoglobin beta subunit (Hemoglobin beta chain)|
           (Beta-globin)
          Length = 147

 Score = 29.3 bits (64), Expect = 9.4
 Identities = 13/41 (31%), Positives = 23/41 (56%)
 Frame = -3

Query: 522 VRNNNVKITHLLSSTASVFECTRCFGSFKLNCQNILYVGRE 400
           +++NN    H     A++ ECTR FG+ K +  N+ ++  E
Sbjct: 54  IKHNNKVSAHGRKVLAAIIECTRHFGNIKGHLANLSHLHSE 94


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.318    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 68,508,164
Number of Sequences: 219361
Number of extensions: 1260331
Number of successful extensions: 3881
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 3744
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 3874
length of database: 80,573,946
effective HSP length: 107
effective length of database: 57,102,319
effective search space used: 5424720305
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
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