ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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| Clone Name | bags8d06 |
|---|---|
| Clone Library Name | barley_pub |
>ref|XM_483549.1| Oryza sativa (japonica cultivar-group), mRNA Length = 1785 Score = 50.1 bits (25), Expect = 0.009 Identities = 28/29 (96%) Strand = Plus / Plus Query: 2 ctccgtcgccgccaactacaacatcctca 30 ||||||||||||||||||||||| ||||| Sbjct: 360 ctccgtcgccgccaactacaacaacctca 388
>dbj|AP008214.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 8, complete sequence Length = 28434780 Score = 50.1 bits (25), Expect = 0.009 Identities = 28/29 (96%) Strand = Plus / Plus Query: 2 ctccgtcgccgccaactacaacatcctca 30 ||||||||||||||||||||||| ||||| Sbjct: 26902296 ctccgtcgccgccaactacaacaacctca 26902324
>dbj|AP004592.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 8, PAC clone:P0666G10 Length = 150761 Score = 50.1 bits (25), Expect = 0.009 Identities = 28/29 (96%) Strand = Plus / Plus Query: 2 ctccgtcgccgccaactacaacatcctca 30 ||||||||||||||||||||||| ||||| Sbjct: 3696 ctccgtcgccgccaactacaacaacctca 3724
>dbj|AP004464.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 8, PAC clone:P0665C04 Length = 177054 Score = 50.1 bits (25), Expect = 0.009 Identities = 28/29 (96%) Strand = Plus / Plus Query: 2 ctccgtcgccgccaactacaacatcctca 30 ||||||||||||||||||||||| ||||| Sbjct: 165086 ctccgtcgccgccaactacaacaacctca 165114
>dbj|AK112001.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-035-B08, full insert sequence Length = 1829 Score = 50.1 bits (25), Expect = 0.009 Identities = 28/29 (96%) Strand = Plus / Plus Query: 2 ctccgtcgccgccaactacaacatcctca 30 ||||||||||||||||||||||| ||||| Sbjct: 106 ctccgtcgccgccaactacaacaacctca 134
>dbj|AK111766.1| Oryza sativa (japonica cultivar-group) cDNA clone:J023063C15, full insert sequence Length = 2131 Score = 50.1 bits (25), Expect = 0.009 Identities = 28/29 (96%) Strand = Plus / Plus Query: 2 ctccgtcgccgccaactacaacatcctca 30 ||||||||||||||||||||||| ||||| Sbjct: 413 ctccgtcgccgccaactacaacaacctca 441
>gb|AY110281.1| Zea mays CL27576_1 mRNA sequence Length = 673 Score = 48.1 bits (24), Expect = 0.034 Identities = 30/32 (93%) Strand = Plus / Minus Query: 174 tgttctgggacatgctccaccccacgcacgcc 205 ||||||||||| |||| ||||||||||||||| Sbjct: 381 tgttctgggacctgctgcaccccacgcacgcc 350
>gb|AY105081.1| Zea mays PCO097316 mRNA sequence Length = 1518 Score = 46.1 bits (23), Expect = 0.13 Identities = 62/75 (82%) Strand = Plus / Plus Query: 167 gactacatgttctgggacatgctccaccccacgcacgccaccatccaacgcggcgtcgtc 226 ||||||||||||||||||||||| || || ||||| || || | |||| || || ||| Sbjct: 1147 gactacatgttctgggacatgctacatcctacgcaggcaacaaatgaacgtggggtggtc 1206 Query: 227 gccttcttctacggc 241 ||| ||||||||||| Sbjct: 1207 gccatcttctacggc 1221
>gb|AC103592.2| Homo sapiens chromosome 1 clone RP11-335E14, complete sequence Length = 197372 Score = 44.1 bits (22), Expect = 0.53 Identities = 22/22 (100%) Strand = Plus / Minus Query: 448 aaaacatcttgtacattcaaaa 469 |||||||||||||||||||||| Sbjct: 143342 aaaacatcttgtacattcaaaa 143321
>gb|AC099769.2| Homo sapiens chromosome 1 clone RP5-963M5, complete sequence Length = 99680 Score = 44.1 bits (22), Expect = 0.53 Identities = 22/22 (100%) Strand = Plus / Plus Query: 448 aaaacatcttgtacattcaaaa 469 |||||||||||||||||||||| Sbjct: 94558 aaaacatcttgtacattcaaaa 94579
>gb|CP000249.1| Frankia sp. CcI3, complete genome Length = 5433628 Score = 44.1 bits (22), Expect = 0.53 Identities = 22/22 (100%) Strand = Plus / Plus Query: 148 ccccgccgccgaccacgatgac 169 |||||||||||||||||||||| Sbjct: 615700 ccccgccgccgaccacgatgac 615721
>gb|DQ231520.1| Streptomyces sp. FR-008 ArsR2 (arsR2), ArsO (arsO), ArsB (arsB), ArsR1 (arsR1), ArsC (arsC), and ArsT (arsT) genes, complete cds; and unknown genes Length = 7568 Score = 42.1 bits (21), Expect = 2.1 Identities = 21/21 (100%) Strand = Plus / Plus Query: 149 cccgccgccgaccacgatgac 169 ||||||||||||||||||||| Sbjct: 2502 cccgccgccgaccacgatgac 2522
>gb|AC119567.11| Homo sapiens X BAC RP11-416J16 (Roswell Park Cancer Institute Human BAC Library) complete sequence Length = 79556 Score = 42.1 bits (21), Expect = 2.1 Identities = 21/21 (100%) Strand = Plus / Minus Query: 484 agataataagtgtgttatttt 504 ||||||||||||||||||||| Sbjct: 2423 agataataagtgtgttatttt 2403
>gb|CP000088.1| Thermobifida fusca YX, complete genome Length = 3642249 Score = 42.1 bits (21), Expect = 2.1 Identities = 21/21 (100%) Strand = Plus / Minus Query: 82 ggcgtgctgcggctccgggaa 102 ||||||||||||||||||||| Sbjct: 2923147 ggcgtgctgcggctccgggaa 2923127
>emb|BX664713.6| Zebrafish DNA sequence from clone DKEY-27N8 in linkage group 8, complete sequence Length = 126218 Score = 42.1 bits (21), Expect = 2.1 Identities = 21/21 (100%) Strand = Plus / Plus Query: 572 gagtgtaataaagcagttttg 592 ||||||||||||||||||||| Sbjct: 10054 gagtgtaataaagcagttttg 10074
>dbj|AP008208.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, complete sequence Length = 35954743 Score = 42.1 bits (21), Expect = 2.1 Identities = 36/41 (87%) Strand = Plus / Minus Query: 167 gactacatgttctgggacatgctccaccccacgcacgccac 207 |||||| | ||||||||| |||| ||||| ||||||||||| Sbjct: 27177298 gactacctcttctgggacctgctgcacccgacgcacgccac 27177258 Score = 40.1 bits (20), Expect = 8.3 Identities = 29/32 (90%) Strand = Plus / Minus Query: 79 gacggcgtgctgcggctccgggaagctcaacg 110 |||||| |||||||||||||| ||| |||||| Sbjct: 27177377 gacggcttgctgcggctccggcaagttcaacg 27177346
>dbj|AP004858.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, BAC clone:OJ1725_H08 Length = 155431 Score = 42.1 bits (21), Expect = 2.1 Identities = 36/41 (87%) Strand = Plus / Minus Query: 167 gactacatgttctgggacatgctccaccccacgcacgccac 207 |||||| | ||||||||| |||| ||||| ||||||||||| Sbjct: 73747 gactacctcttctgggacctgctgcacccgacgcacgccac 73707 Score = 40.1 bits (20), Expect = 8.3 Identities = 29/32 (90%) Strand = Plus / Minus Query: 79 gacggcgtgctgcggctccgggaagctcaacg 110 |||||| |||||||||||||| ||| |||||| Sbjct: 73826 gacggcttgctgcggctccggcaagttcaacg 73795
>dbj|AP005055.2| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, PAC clone:P0684A08 Length = 137841 Score = 42.1 bits (21), Expect = 2.1 Identities = 36/41 (87%) Strand = Plus / Minus Query: 167 gactacatgttctgggacatgctccaccccacgcacgccac 207 |||||| | ||||||||| |||| ||||| ||||||||||| Sbjct: 27969 gactacctcttctgggacctgctgcacccgacgcacgccac 27929 Score = 40.1 bits (20), Expect = 8.3 Identities = 29/32 (90%) Strand = Plus / Minus Query: 79 gacggcgtgctgcggctccgggaagctcaacg 110 |||||| |||||||||||||| ||| |||||| Sbjct: 28048 gacggcttgctgcggctccggcaagttcaacg 28017
>dbj|AK103585.1| Oryza sativa (japonica cultivar-group) cDNA clone:J033133B12, full insert sequence Length = 1312 Score = 42.1 bits (21), Expect = 2.1 Identities = 36/41 (87%) Strand = Plus / Plus Query: 167 gactacatgttctgggacatgctccaccccacgcacgccac 207 |||||| | ||||||||| |||| ||||| ||||||||||| Sbjct: 981 gactacctcttctgggacctgctgcacccgacgcacgccac 1021 Score = 40.1 bits (20), Expect = 8.3 Identities = 29/32 (90%) Strand = Plus / Plus Query: 79 gacggcgtgctgcggctccgggaagctcaacg 110 |||||| |||||||||||||| ||| |||||| Sbjct: 902 gacggcttgctgcggctccggcaagttcaacg 933
>ref|NM_190284.1| Oryza sativa (japonica cultivar-group), predicted mRNA Length = 468 Score = 40.1 bits (20), Expect = 8.3 Identities = 20/20 (100%) Strand = Plus / Minus Query: 216 gcggcgtcgtcgccttcttc 235 |||||||||||||||||||| Sbjct: 383 gcggcgtcgtcgccttcttc 364
>gb|BT018454.1| Zea mays clone EL01N0408D11.d mRNA sequence Length = 1429 Score = 40.1 bits (20), Expect = 8.3 Identities = 29/32 (90%) Strand = Plus / Plus Query: 174 tgttctgggacatgctccaccccacgcacgcc 205 ||||||||||| |||| ||||| ||||||||| Sbjct: 1112 tgttctgggacctgctgcacccgacgcacgcc 1143
>gb|CP000081.1| Leishmania major chromosome 35, complete sequence Length = 2090491 Score = 40.1 bits (20), Expect = 8.3 Identities = 20/20 (100%) Strand = Plus / Minus Query: 519 gtacgtgcaactagctcgat 538 |||||||||||||||||||| Sbjct: 1149994 gtacgtgcaactagctcgat 1149975
>gb|AC146600.4| Mus musculus BAC clone RP23-386G7 from chromosome 17, complete sequence Length = 198403 Score = 40.1 bits (20), Expect = 8.3 Identities = 26/28 (92%) Strand = Plus / Minus Query: 423 tttgacagtttaatttgaaactgccaaa 450 |||||||||||| ||||||||| ||||| Sbjct: 122890 tttgacagtttattttgaaactaccaaa 122863
>gb|CP000352.1| Ralstonia metallidurans CH34, complete genome Length = 3928089 Score = 40.1 bits (20), Expect = 8.3 Identities = 20/20 (100%) Strand = Plus / Plus Query: 265 cgtcaacttcgccacgctcg 284 |||||||||||||||||||| Sbjct: 1855896 cgtcaacttcgccacgctcg 1855915
>gb|AC122377.4| Mus musculus BAC clone RP23-473B13 from chromosome 17, complete sequence Length = 174143 Score = 40.1 bits (20), Expect = 8.3 Identities = 26/28 (92%) Strand = Plus / Plus Query: 423 tttgacagtttaatttgaaactgccaaa 450 |||||||||||| ||||||||| ||||| Sbjct: 118438 tttgacagtttattttgaaactaccaaa 118465
>emb|AL031687.17|HS998H6 Human DNA sequence from clone RP5-998H6 on chromosome 20q13.1 Contains the CDH22 gene for cadherin-like 22, a novel gene and two CpG islands, complete sequence Length = 147815 Score = 40.1 bits (20), Expect = 8.3 Identities = 23/24 (95%) Strand = Plus / Plus Query: 568 atgtgagtgtaataaagcagtttt 591 ||||||||| |||||||||||||| Sbjct: 26435 atgtgagtggaataaagcagtttt 26458
>emb|Z83933.1|CVZ83933 Chlorobium vibrioforme 15 kb genomic DNA fragment Length = 14648 Score = 40.1 bits (20), Expect = 8.3 Identities = 20/20 (100%) Strand = Plus / Minus Query: 147 gccccgccgccgaccacgat 166 |||||||||||||||||||| Sbjct: 2896 gccccgccgccgaccacgat 2877
>emb|BX294133.1| Pirellula sp. strain 1 complete genome; segment 1/24 Length = 311050 Score = 40.1 bits (20), Expect = 8.3 Identities = 23/24 (95%) Strand = Plus / Plus Query: 88 ctgcggctccgggaagctcaacgc 111 |||||||| ||||||||||||||| Sbjct: 289390 ctgcggcttcgggaagctcaacgc 289413
>emb|AL513466.1|NCB18D24 Neurospora crassa DNA linkage group V BAC contig B18D24 Length = 157180 Score = 40.1 bits (20), Expect = 8.3 Identities = 23/24 (95%) Strand = Plus / Plus Query: 202 cgccaccatccaacgcggcgtcgt 225 ||||| |||||||||||||||||| Sbjct: 102848 cgccatcatccaacgcggcgtcgt 102871
>gb|AC078857.12| Homo sapiens 3 BAC RP11-678L1 (Roswell Park Cancer Institute Human BAC Library) complete sequence Length = 190060 Score = 40.1 bits (20), Expect = 8.3 Identities = 20/20 (100%) Strand = Plus / Minus Query: 462 attcaaaaacagaggcagta 481 |||||||||||||||||||| Sbjct: 70425 attcaaaaacagaggcagta 70406
>gb|AE005952.1| Caulobacter crescentus CB15 section 278 of 359 of the complete genome Length = 13994 Score = 40.1 bits (20), Expect = 8.3 Identities = 20/20 (100%) Strand = Plus / Minus Query: 150 ccgccgccgaccacgatgac 169 |||||||||||||||||||| Sbjct: 2884 ccgccgccgaccacgatgac 2865
>gb|CP000264.1| Jannaschia sp. CCS1, complete genome Length = 4317977 Score = 40.1 bits (20), Expect = 8.3 Identities = 26/28 (92%) Strand = Plus / Plus Query: 115 ggtgatgtgcagccacccgggcacgacg 142 ||||||| ||||||| |||||||||||| Sbjct: 3720538 ggtgatgcgcagccatccgggcacgacg 3720565
>gb|AC159471.6| Mus musculus 6 BAC RP24-148O24 (Roswell Park Cancer Institute (C57BL/6J Male) Mouse BAC Library) complete sequence Length = 159386 Score = 40.1 bits (20), Expect = 8.3 Identities = 20/20 (100%) Strand = Plus / Minus Query: 434 aatttgaaactgccaaaaca 453 |||||||||||||||||||| Sbjct: 99203 aatttgaaactgccaaaaca 99184
>emb|AL954812.14| Zebrafish DNA sequence from clone DKEY-50G15, complete sequence Length = 192304 Score = 40.1 bits (20), Expect = 8.3 Identities = 23/24 (95%) Strand = Plus / Minus Query: 418 gatgttttgacagtttaatttgaa 441 ||||||||||||||||| |||||| Sbjct: 130482 gatgttttgacagtttattttgaa 130459
>gb|CP000250.1| Rhodopseudomonas palustris HaA2, complete genome Length = 5331656 Score = 40.1 bits (20), Expect = 8.3 Identities = 20/20 (100%) Strand = Plus / Minus Query: 150 ccgccgccgaccacgatgac 169 |||||||||||||||||||| Sbjct: 3236778 ccgccgccgaccacgatgac 3236759
>gb|CP000116.1| Thiobacillus denitrificans ATCC 25259, complete genome Length = 2909809 Score = 40.1 bits (20), Expect = 8.3 Identities = 23/24 (95%) Strand = Plus / Minus Query: 207 ccatccaacgcggcgtcgtcgcct 230 ||||||| |||||||||||||||| Sbjct: 1080975 ccatccagcgcggcgtcgtcgcct 1080952
>dbj|AP008207.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, complete sequence Length = 43261740 Score = 40.1 bits (20), Expect = 8.3 Identities = 20/20 (100%) Strand = Plus / Minus Query: 216 gcggcgtcgtcgccttcttc 235 |||||||||||||||||||| Sbjct: 39040534 gcggcgtcgtcgccttcttc 39040515
>dbj|BA000030.2| Streptomyces avermitilis MA-4680 genomic DNA, complete genome Length = 9025608 Score = 40.1 bits (20), Expect = 8.3 Identities = 23/24 (95%) Strand = Plus / Minus Query: 254 tacggcgagcccgtcaacttcgcc 277 |||||||||| ||||||||||||| Sbjct: 8777894 tacggcgagcgcgtcaacttcgcc 8777871 Score = 40.1 bits (20), Expect = 8.3 Identities = 20/20 (100%) Strand = Plus / Minus Query: 150 ccgccgccgaccacgatgac 169 |||||||||||||||||||| Sbjct: 2046395 ccgccgccgaccacgatgac 2046376
>dbj|AP003349.4| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, PAC clone:P0674H09 Length = 142955 Score = 40.1 bits (20), Expect = 8.3 Identities = 20/20 (100%) Strand = Plus / Minus Query: 216 gcggcgtcgtcgccttcttc 235 |||||||||||||||||||| Sbjct: 114167 gcggcgtcgtcgccttcttc 114148
>dbj|AP003418.2| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, PAC clone:P0506A10 Length = 145265 Score = 40.1 bits (20), Expect = 8.3 Identities = 20/20 (100%) Strand = Plus / Minus Query: 216 gcggcgtcgtcgccttcttc 235 |||||||||||||||||||| Sbjct: 58514 gcggcgtcgtcgccttcttc 58495
>gb|AC096547.1| Homo sapiens BAC clone CTD-2016K1 from 2, complete sequence Length = 129164 Score = 40.1 bits (20), Expect = 8.3 Identities = 20/20 (100%) Strand = Plus / Plus Query: 454 tcttgtacattcaaaaacag 473 |||||||||||||||||||| Sbjct: 20596 tcttgtacattcaaaaacag 20615
>gb|AE005053.1| Halobacterium sp. NRC-1 section 84 of 170 of the complete genome Length = 11842 Score = 40.1 bits (20), Expect = 8.3 Identities = 20/20 (100%) Strand = Plus / Plus Query: 150 ccgccgccgaccacgatgac 169 |||||||||||||||||||| Sbjct: 7241 ccgccgccgaccacgatgac 7260
>gb|AF110374.1|AF110374 Aegilops speltoides granule-bound starch synthase WX-TsB protein (wx-TsB) gene, complete cds Length = 2826 Score = 40.1 bits (20), Expect = 8.3 Identities = 20/20 (100%) Strand = Plus / Plus Query: 7 tcgccgccaactacaacatc 26 |||||||||||||||||||| Sbjct: 1644 tcgccgccaactacaacatc 1663
>dbj|AK059531.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-029-D08, full insert sequence Length = 1451 Score = 40.1 bits (20), Expect = 8.3 Identities = 29/32 (90%) Strand = Plus / Plus Query: 79 gacggcgtgctgcggctccgggaagctcaacg 110 |||||| |||||||||||||| ||| |||||| Sbjct: 920 gacggcttgctgcggctccggcaagttcaacg 951
>gb|CP000159.1| Salinibacter ruber DSM 13855, complete genome Length = 3551823 Score = 40.1 bits (20), Expect = 8.3 Identities = 20/20 (100%) Strand = Plus / Minus Query: 272 ttcgccacgctcgtcacggg 291 |||||||||||||||||||| Sbjct: 2248819 ttcgccacgctcgtcacggg 2248800
>gb|L43364.1|ADRORF1G Mastadenovirus sus1 pVIII protein (ORF 1) gene, complete cds, PAV-1 fiber protein (ORF5) gene, complete cds Length = 1993 Score = 40.1 bits (20), Expect = 8.3 Identities = 20/20 (100%) Strand = Plus / Plus Query: 11 cgccaactacaacatcctca 30 |||||||||||||||||||| Sbjct: 627 cgccaactacaacatcctca 646
>dbj|AB070941.1| Streptomyces avermitilis polyketide-1 biosynthetic gene cluster Length = 24045 Score = 40.1 bits (20), Expect = 8.3 Identities = 23/24 (95%) Strand = Plus / Minus Query: 254 tacggcgagcccgtcaacttcgcc 277 |||||||||| ||||||||||||| Sbjct: 3886 tacggcgagcgcgtcaacttcgcc 3863 Database: nt Posted date: May 29, 2006 11:10 AM Number of letters in database: 3,984,495,279 Number of sequences in database: 917,343 Database: /shigen/export/home/twatanab/db/nt/nt.01 Posted date: May 29, 2006 11:16 AM Number of letters in database: 3,988,174,986 Number of sequences in database: 835,257 Database: /shigen/export/home/twatanab/db/nt/nt.02 Posted date: May 29, 2006 11:21 AM Number of letters in database: 3,991,246,324 Number of sequences in database: 771,481 Database: /shigen/export/home/twatanab/db/nt/nt.03 Posted date: May 29, 2006 11:27 AM Number of letters in database: 3,990,718,311 Number of sequences in database: 977,174 Database: /shigen/export/home/twatanab/db/nt/nt.04 Posted date: May 29, 2006 11:29 AM Number of letters in database: 1,278,410,368 Number of sequences in database: 400,813 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 4,099,672 Number of Sequences: 3902068 Number of extensions: 4099672 Number of successful extensions: 72565 Number of sequences better than 10.0: 48 Number of HSP's better than 10.0 without gapping: 49 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 71655 Number of HSP's gapped (non-prelim): 910 length of query: 608 length of database: 17,233,045,268 effective HSP length: 23 effective length of query: 585 effective length of database: 17,143,297,704 effective search space: 10028829156840 effective search space used: 10028829156840 T: 0 A: 0 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 20 (40.1 bits)
