ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
Japanese | English
更新日：2016年5月1日

Clone Information

BLAST Search Result

Clone Name bags8d02
Clone Library Name barley_pub
No. Definition Score
(bits)		 E
Value
1gb|BT018245.1| Zea mays clone EL01N0563D07.c mRNA sequence 301 1e-78
2ref|NM_188866.1| Oryza sativa (japonica cultivar-group), mRNA 281 1e-72
3dbj|AP008213.1| Oryza sativa (japonica cultivar-group) genomic D... 281 1e-72
4dbj|AP003832.3| Oryza sativa (japonica cultivar-group) genomic D... 281 1e-72
5gb|AY106689.1| Zea mays PCO137705 mRNA sequence 224 3e-55
6gb|BT018546.1| Zea mays clone EL01N0438C08.d mRNA sequence 54 6e-04
7ref|NM_185321.2| Oryza sativa (japonica cultivar-group), mRNA 44 0.53
8dbj|AP008212.1| Oryza sativa (japonica cultivar-group) genomic D... 44 0.53
9dbj|AP001129.1| Oryza sativa (japonica cultivar-group) genomic D... 44 0.53
10dbj|AK106504.1| Oryza sativa (japonica cultivar-group) cDNA clon... 44 0.53
11gb|AC103982.10| Homo sapiens chromosome 15, clone RP11-343B18, c... 42 2.1
12gb|AC099101.7| Rattus norvegicus 14 BAC CH230-186B23 (Children's... 42 2.1
13gb|AC011118.13| Homo sapiens chromosome 8, clone RP11-163D8, com... 42 2.1
14gb|AC067805.9| Homo sapiens chromosome 15, clone RP11-63A23, com... 42 2.1
15gb|AC162284.11| Mus musculus chromosome 8, clone RP23-256C11, co... 40 8.3
16gb|AF217491.1|AF217491S1 Homo sapiens fragile 16D oxido reductas... 40 8.3
17emb|AL591783.1|SME591783 Sinorhizobium meliloti 1021 complete ch... 40 8.3
18gb|AC126032.4| Mus musculus BAC clone RP24-94B12 from chromosome... 40 8.3
19gb|AC160976.2| Mus musculus BAC clone RP24-67M24 from chromosome... 40 8.3
20emb|AL356457.25| Human DNA sequence from clone RP11-145D11 on ch... 40 8.3
21gb|CP000088.1| Thermobifida fusca YX, complete genome 40 8.3
22emb|BX640451.1| Bordetella bronchiseptica strain RB50, complete ... 40 8.3
23emb|BX640441.1| Bordetella bronchiseptica strain RB50, complete ... 40 8.3
24emb|BX640429.1| Bordetella parapertussis strain 12822, complete ... 40 8.3
25gb|CP000240.1| Synechococcus sp. JA-2-3B'a(2-13), complete genome 40 8.3
26gb|CP000239.1| Synechococcus sp. JA-3-3Ab, complete genome 40 8.3
27dbj|AK158308.1| Mus musculus adult inner ear cDNA, RIKEN full-le... 40 8.3
28emb|BX247868.13| Zebrafish DNA sequence from clone DKEY-253A1 in... 40 8.3
29dbj|AP008215.1| Oryza sativa (japonica cultivar-group) genomic D... 40 8.3
30gb|AC109134.2| Homo sapiens chromosome 16 clone CTD-2343L8, comp... 40 8.3
31gb|AC020763.6| Homo sapiens chromosome 16 clone RP11-394B2, comp... 40 8.3
32gb|AE004604.1| Pseudomonas aeruginosa PAO1, section 165 of 529 o... 40 8.3
33dbj|BA000039.2| Thermosynechococcus elongatus BP-1 DNA, complete... 40 8.3
34dbj|AP005689.3| Oryza sativa (japonica cultivar-group) genomic D... 40 8.3
35dbj|AP005685.3| Oryza sativa (japonica cultivar-group) genomic D... 40 8.3
36dbj|AK065335.1| Oryza sativa (japonica cultivar-group) cDNA clon... 40 8.3
37gb|AE016825.1| Chromobacterium violaceum ATCC 12472, complete ge... 40 8.3
38gb|AC139320.4| Mus musculus BAC clone RP24-410G8 from 9, complet... 40 8.3
39gb|AC162033.11| Mus musculus chromosome 8, clone RP23-162M13, co... 40 8.3
40gb|L37354.1|SERORF1 Saccharopolyspora erythraea ORF1 and ORF4, p... 40 8.3 
>gb|BT018245.1| Zea mays clone EL01N0563D07.c mRNA sequence
          Length = 1101

 Score =  301 bits (152), Expect = 1e-78
 Identities = 363/432 (84%), Gaps = 1/432 (0%)
 Strand = Plus / Minus

                                                                       
Query: 74  cagctcctcaaggggatcaacagctacagagcttctctcaaggtcccggcgctcaccgag 133
           |||||||||||||| ||||||||||||||  | || |||||||||||||||||  |||||
Sbjct: 459 cagctcctcaagggcatcaacagctacaggtcctcgctcaaggtcccggcgctggccgag 400

                                                                       
Query: 134 naacagcaatgctgactgcctggccgagcagctagcaaagaagttcaaggggcagccgtg 193
            ||||  || || |  ||||||||||||||||| || | | ||||||||||||||  |||
Sbjct: 399 -aacaagaacgcggcgtgcctggccgagcagctcgcgaggcagttcaaggggcaggagtg 341

                                                                       
Query: 194 cacaaacaccaccggagccaacaccgtccccggcaccgagccgcagttccccgactaccc 253
           ||| ||||| || || ||||||||||||  |||||| |||| ||||||||| ||||||||
Sbjct: 340 caccaacacgacgggcgccaacaccgtcatcggcacggagcagcagttcccggactaccc 281

                                                                       
Query: 254 caagtttctcgaccgctgccacctcaacgcgtcagttaccgaggatggacaggtgatgcc 313
           || ||  || ||||||||||||||||||||||| || |||||||| || |||||||||||
Sbjct: 280 caggtacctggaccgctgccacctcaacgcgtcggtgaccgaggacggccaggtgatgcc 221

                                                                       
Query: 314 ggcatgcgtgcccggccttgtggccgacgttgtgctgaccaactacaccaagtcccagta 373
           ||| |||||||| ||||| ||  ||| ||| || ||  |||||||||||||||| |||||
Sbjct: 220 ggcgtgcgtgccgggcctcgtccccgccgtcgtcctcgccaactacaccaagtcgcagta 161

                                                                       
Query: 374 caaccggttcctcaacgacaccaagtactccggcgtcgggatcggcaacgaaggagactg 433
           |||||||||||||||||||| | ||| |||||||| ||||||||  | ||| || |||||
Sbjct: 160 caaccggttcctcaacgacagccagttctccggcgccgggatcgcgagcgagggcgactg 101

                                                                       
Query: 434 ggtggtcgtcgtcctcagcaccagcaccgactccggcgactactcccctgctcccccggg 493
           ||| || ||||| |||||||||||||| |  |||||||||||||| || |||||   |||
Sbjct: 100 ggtcgtggtcgtgctcagcaccagcacgggatccggcgactactcgccggctccaagggg 41

                       
Query: 494 ctcgaactgggc 505
           ||| ||||||||
Sbjct: 40  ctccaactgggc 29



 Score = 40.1 bits (20), Expect = 8.3
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 26  tcgcctcctccctcctgcac 45
           ||||||||||||||||||||
Sbjct: 988 tcgcctcctccctcctgcac 969
to top
>ref|NM_188866.1| Oryza sativa (japonica cultivar-group),  mRNA
          Length = 585

 Score =  281 bits (142), Expect = 1e-72
 Identities = 365/438 (83%), Gaps = 1/438 (0%)
 Strand = Plus / Plus

                                                                       
Query: 74  cagctcctcaaggggatcaacagctacagagcttctctcaaggtcccggcgctcaccgag 133
           ||||| |||||||| |||||||||||||||||||| ||||| ||||| |||||  |||||
Sbjct: 85  cagcttctcaagggcatcaacagctacagagcttccctcaaagtccctgcgctatccgag 144

                                                                       
Query: 134 naacagcaatgctgactgcctggccgagcagctagcaaagaagttcaaggggcagccgtg 193
            ||||  ||||||| |||| |||| |||||||||||| || | ||||| |  || || ||
Sbjct: 145 -aacaagaatgctgcctgcttggctgagcagctagcacagcaattcaaagaccaaccttg 203

                                                                       
Query: 194 cacaaacaccaccggagccaacaccgtccccggcaccgagccgcagttccccgactaccc 253
           ||| |||||||||||||| ||||| ||||| |||||||||| ||||||||||||||||||
Sbjct: 204 caccaacaccaccggagcaaacactgtccctggcaccgagcagcagttccccgactaccc 263

                                                                       
Query: 254 caagtttctcgaccgctgccacctcaacgcgtcagttaccgaggatggacaggtgatgcc 313
            ||||  |||||||  ||||| ||||||||||| || ||||  || || |||||||||||
Sbjct: 264 aaagtacctcgaccattgccatctcaacgcgtcggtgaccggagacggtcaggtgatgcc 323

                                                                       
Query: 314 ggcatgcgtgcccggccttgtggccgacgttgtgctgaccaactacaccaagtcccagta 373
           ||| ||||| ||||| |||||  | || || || |||||||||||||||||||| |||||
Sbjct: 324 ggcctgcgttcccggacttgtacctgatgtggttctgaccaactacaccaagtcacagta 383

                                                                       
Query: 374 caaccggttcctcaacgacaccaagtactccggcgtcgggatcggcaacgaaggagactg 433
           ||||| ||  || || |||||||||| ||| || || |||||||  || || ||||| ||
Sbjct: 384 caaccagtatctgaatgacaccaagttctctggtgttgggatcgcgaatgagggagattg 443

                                                                       
Query: 434 ggtggtcgtcgtcctcagcaccagcaccgactccggcgactactcccctgctcccccggg 493
           ||||||||| ||||||||||| ||| | |  || || || ||||||||||||||||| ||
Sbjct: 444 ggtggtcgttgtcctcagcacgagctcgggttcaggtgattactcccctgctccccctgg 503

                             
Query: 494 ctcgaactgggctccttc 511
           ||| ||||||||||||||
Sbjct: 504 ctccaactgggctccttc 521
to top
>dbj|AP008213.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 7, complete
                sequence
          Length = 29644043

 Score =  281 bits (142), Expect = 1e-72
 Identities = 365/438 (83%), Gaps = 1/438 (0%)
 Strand = Plus / Minus

                                                                            
Query: 74       cagctcctcaaggggatcaacagctacagagcttctctcaaggtcccggcgctcaccgag 133
                ||||| |||||||| |||||||||||||||||||| ||||| ||||| |||||  |||||
Sbjct: 26829324 cagcttctcaagggcatcaacagctacagagcttccctcaaagtccctgcgctatccgag 26829265

                                                                            
Query: 134      naacagcaatgctgactgcctggccgagcagctagcaaagaagttcaaggggcagccgtg 193
                 ||||  ||||||| |||| |||| |||||||||||| || | ||||| |  || || ||
Sbjct: 26829264 -aacaagaatgctgcctgcttggctgagcagctagcacagcaattcaaagaccaaccttg 26829206

                                                                            
Query: 194      cacaaacaccaccggagccaacaccgtccccggcaccgagccgcagttccccgactaccc 253
                ||| |||||||||||||| ||||| ||||| |||||||||| ||||||||||||||||||
Sbjct: 26829205 caccaacaccaccggagcaaacactgtccctggcaccgagcagcagttccccgactaccc 26829146

                                                                            
Query: 254      caagtttctcgaccgctgccacctcaacgcgtcagttaccgaggatggacaggtgatgcc 313
                 ||||  |||||||  ||||| ||||||||||| || ||||  || || |||||||||||
Sbjct: 26829145 aaagtacctcgaccattgccatctcaacgcgtcggtgaccggagacggtcaggtgatgcc 26829086

                                                                            
Query: 314      ggcatgcgtgcccggccttgtggccgacgttgtgctgaccaactacaccaagtcccagta 373
                ||| ||||| ||||| |||||  | || || || |||||||||||||||||||| |||||
Sbjct: 26829085 ggcctgcgttcccggacttgtacctgatgtggttctgaccaactacaccaagtcacagta 26829026

                                                                            
Query: 374      caaccggttcctcaacgacaccaagtactccggcgtcgggatcggcaacgaaggagactg 433
                ||||| ||  || || |||||||||| ||| || || |||||||  || || ||||| ||
Sbjct: 26829025 caaccagtatctgaatgacaccaagttctctggtgttgggatcgcgaatgagggagattg 26828966

                                                                            
Query: 434      ggtggtcgtcgtcctcagcaccagcaccgactccggcgactactcccctgctcccccggg 493
                ||||||||| ||||||||||| ||| | |  || || || ||||||||||||||||| ||
Sbjct: 26828965 ggtggtcgttgtcctcagcacgagctcgggttcaggtgattactcccctgctccccctgg 26828906

                                  
Query: 494      ctcgaactgggctccttc 511
                ||| ||||||||||||||
Sbjct: 26828905 ctccaactgggctccttc 26828888
to top
>dbj|AP003832.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 7, BAC
             clone:OJ1458_B07
          Length = 99415

 Score =  281 bits (142), Expect = 1e-72
 Identities = 365/438 (83%), Gaps = 1/438 (0%)
 Strand = Plus / Minus

                                                                         
Query: 74    cagctcctcaaggggatcaacagctacagagcttctctcaaggtcccggcgctcaccgag 133
             ||||| |||||||| |||||||||||||||||||| ||||| ||||| |||||  |||||
Sbjct: 75498 cagcttctcaagggcatcaacagctacagagcttccctcaaagtccctgcgctatccgag 75439

                                                                         
Query: 134   naacagcaatgctgactgcctggccgagcagctagcaaagaagttcaaggggcagccgtg 193
              ||||  ||||||| |||| |||| |||||||||||| || | ||||| |  || || ||
Sbjct: 75438 -aacaagaatgctgcctgcttggctgagcagctagcacagcaattcaaagaccaaccttg 75380

                                                                         
Query: 194   cacaaacaccaccggagccaacaccgtccccggcaccgagccgcagttccccgactaccc 253
             ||| |||||||||||||| ||||| ||||| |||||||||| ||||||||||||||||||
Sbjct: 75379 caccaacaccaccggagcaaacactgtccctggcaccgagcagcagttccccgactaccc 75320

                                                                         
Query: 254   caagtttctcgaccgctgccacctcaacgcgtcagttaccgaggatggacaggtgatgcc 313
              ||||  |||||||  ||||| ||||||||||| || ||||  || || |||||||||||
Sbjct: 75319 aaagtacctcgaccattgccatctcaacgcgtcggtgaccggagacggtcaggtgatgcc 75260

                                                                         
Query: 314   ggcatgcgtgcccggccttgtggccgacgttgtgctgaccaactacaccaagtcccagta 373
             ||| ||||| ||||| |||||  | || || || |||||||||||||||||||| |||||
Sbjct: 75259 ggcctgcgttcccggacttgtacctgatgtggttctgaccaactacaccaagtcacagta 75200

                                                                         
Query: 374   caaccggttcctcaacgacaccaagtactccggcgtcgggatcggcaacgaaggagactg 433
             ||||| ||  || || |||||||||| ||| || || |||||||  || || ||||| ||
Sbjct: 75199 caaccagtatctgaatgacaccaagttctctggtgttgggatcgcgaatgagggagattg 75140

                                                                         
Query: 434   ggtggtcgtcgtcctcagcaccagcaccgactccggcgactactcccctgctcccccggg 493
             ||||||||| ||||||||||| ||| | |  || || || ||||||||||||||||| ||
Sbjct: 75139 ggtggtcgttgtcctcagcacgagctcgggttcaggtgattactcccctgctccccctgg 75080

                               
Query: 494   ctcgaactgggctccttc 511
             ||| ||||||||||||||
Sbjct: 75079 ctccaactgggctccttc 75062
to top
>gb|AY106689.1| Zea mays PCO137705 mRNA sequence
          Length = 698

 Score =  224 bits (113), Expect = 3e-55
 Identities = 236/277 (85%)
 Strand = Plus / Plus

                                                                       
Query: 229 ccgagccgcagttccccgactaccccaagtttctcgaccgctgccacctcaacgcgtcag 288
           |||||| ||||||||| |||||||||| ||  || ||||||||||||||||||||||| |
Sbjct: 187 ccgagcagcagttcccggactaccccaggtacctggaccgctgccacctcaacgcgtcgg 246

                                                                       
Query: 289 ttaccgaggatggacaggtgatgccggcatgcgtgcccggccttgtggccgacgttgtgc 348
           | |||||||| || |||||||||||||| |||||||| ||||| |   ||| ||| || |
Sbjct: 247 tgaccgaggacggccaggtgatgccggcgtgcgtgccgggcctcgcccccgccgtcgtcc 306

                                                                       
Query: 349 tgaccaactacaccaagtcccagtacaaccggttcctcaacgacaccaagtactccggcg 408
           |  |||||||||||||||| ||||||||||||||||||||||||| | ||| ||||||||
Sbjct: 307 tcgccaactacaccaagtcgcagtacaaccggttcctcaacgacagccagttctccggcg 366

                                                                       
Query: 409 tcgggatcggcaacgaaggagactgggtggtcgtcgtcctcagcaccagcaccgactccg 468
            ||||||||  | ||| || |||||||| || ||||| |||||||||||||| |  ||||
Sbjct: 367 ccgggatcgcgagcgagggcgactgggtcgtggtcgtgctcagcaccagcacgggatccg 426

                                                
Query: 469 gcgactactcccctgctcccccgggctcgaactgggc 505
           |||||||||| || ||||| |||||||| ||||||||
Sbjct: 427 gcgactactcgccggctccgccgggctccaactgggc 463



 Score = 65.9 bits (33), Expect = 1e-07
 Identities = 48/53 (90%)
 Strand = Plus / Plus

                                                                
Query: 74  cagctcctcaaggggatcaacagctacagagcttctctcaaggtcccggcgct 126
           |||||||||||||| ||||||||||||||  | || |||||||||||||||||
Sbjct: 105 cagctcctcaagggcatcaacagctacaggtcctcgctcaaggtcccggcgct 157



 Score = 50.1 bits (25), Expect = 0.009
 Identities = 31/33 (93%)
 Strand = Plus / Plus

                                            
Query: 544 tggtagggtttgtagttttgctgatgaagtgag 576
           |||| |||||||||||||||||| |||||||||
Sbjct: 511 tggtggggtttgtagttttgctggtgaagtgag 543
to top
>gb|BT018546.1| Zea mays clone EL01N0438C08.d mRNA sequence
          Length = 1776

 Score = 54.0 bits (27), Expect = 6e-04
 Identities = 48/55 (87%)
 Strand = Plus / Plus

                                                                  
Query: 153 ctggccgagcagctagcaaagaagttcaaggggcagccgtgcacaaacaccaccg 207
           |||||||||||||| |||| | ||||||||||||||  |||||| ||||| ||||
Sbjct: 510 ctggccgagcagctcgcaaggcagttcaaggggcaggagtgcaccaacacgaccg 564



 Score = 48.1 bits (24), Expect = 0.034
 Identities = 42/48 (87%)
 Strand = Plus / Plus

                                                           
Query: 74  cagctcctcaaggggatcaacagctacagagcttctctcaaggtcccg 121
           |||||||||||||| |||||||||||| |  | || ||||||||||||
Sbjct: 435 cagctcctcaagggcatcaacagctactggtcctcgctcaaggtcccg 482
to top
>ref|NM_185321.2| Oryza sativa (japonica cultivar-group),  mRNA
          Length = 1508

 Score = 44.1 bits (22), Expect = 0.53
 Identities = 22/22 (100%)
 Strand = Plus / Minus

                                 
Query: 452 caccagcaccgactccggcgac 473
           ||||||||||||||||||||||
Sbjct: 617 caccagcaccgactccggcgac 596
to top
>dbj|AP008212.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 6,
              complete sequence
          Length = 30731886

 Score = 44.1 bits (22), Expect = 0.53
 Identities = 22/22 (100%)
 Strand = Plus / Plus

                                    
Query: 452    caccagcaccgactccggcgac 473
              ||||||||||||||||||||||
Sbjct: 346900 caccagcaccgactccggcgac 346921
to top
>dbj|AP001129.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 6, PAC
             clone:P0644B06
          Length = 194509

 Score = 44.1 bits (22), Expect = 0.53
 Identities = 22/22 (100%)
 Strand = Plus / Plus

                                   
Query: 452   caccagcaccgactccggcgac 473
             ||||||||||||||||||||||
Sbjct: 56853 caccagcaccgactccggcgac 56874
to top
>dbj|AK106504.1| Oryza sativa (japonica cultivar-group) cDNA clone:002-105-F11, full
           insert sequence
          Length = 1508

 Score = 44.1 bits (22), Expect = 0.53
 Identities = 22/22 (100%)
 Strand = Plus / Minus

                                 
Query: 452 caccagcaccgactccggcgac 473
           ||||||||||||||||||||||
Sbjct: 617 caccagcaccgactccggcgac 596
to top
>gb|AC103982.10| Homo sapiens chromosome 15, clone RP11-343B18, complete sequence
          Length = 197370

 Score = 42.1 bits (21), Expect = 2.1
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                   
Query: 498    aactgggctccttctgtccag 518
              |||||||||||||||||||||
Sbjct: 157651 aactgggctccttctgtccag 157671
to top
>gb|AC099101.7| Rattus norvegicus 14 BAC CH230-186B23 (Children's Hospital Oakland
             Research Institute) complete sequence
          Length = 211584

 Score = 42.1 bits (21), Expect = 2.1
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                  
Query: 7     ctcttctgcttcctggccatc 27
             |||||||||||||||||||||
Sbjct: 96858 ctcttctgcttcctggccatc 96838
to top
>gb|AC011118.13| Homo sapiens chromosome 8, clone RP11-163D8, complete sequence
          Length = 135968

 Score = 42.1 bits (21), Expect = 2.1
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                  
Query: 514   tccagccattcagctggatga 534
             |||||||||||||||||||||
Sbjct: 44250 tccagccattcagctggatga 44270
to top
>gb|AC067805.9| Homo sapiens chromosome 15, clone RP11-63A23, complete sequence
          Length = 170883

 Score = 42.1 bits (21), Expect = 2.1
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                  
Query: 498   aactgggctccttctgtccag 518
             |||||||||||||||||||||
Sbjct: 41056 aactgggctccttctgtccag 41076
to top
>gb|AC162284.11| Mus musculus chromosome 8, clone RP23-256C11, complete sequence
          Length = 162981

 Score = 40.1 bits (20), Expect = 8.3
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                      
Query: 27     cgcctcctccctcctgcaccccgc 50
              |||| |||||||||||||||||||
Sbjct: 135799 cgccccctccctcctgcaccccgc 135776
to top
>gb|AF217491.1|AF217491S1 Homo sapiens fragile 16D oxido reductase (FOR) gene, exon 6
          Length = 26040

 Score = 40.1 bits (20), Expect = 8.3
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 506   tccttctgtccagccattca 525
             ||||||||||||||||||||
Sbjct: 14074 tccttctgtccagccattca 14055
to top
>emb|AL591783.1|SME591783 Sinorhizobium meliloti 1021 complete chromosome; segment 2/12
          Length = 306650

 Score = 40.1 bits (20), Expect = 8.3
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                     
Query: 304   aggtgatgccggcatgcgtgcccg 327
             ||||||||||||||| ||||||||
Sbjct: 18838 aggtgatgccggcatccgtgcccg 18815
to top
>gb|AC126032.4| Mus musculus BAC clone RP24-94B12 from chromosome 1, complete sequence
          Length = 207475

 Score = 40.1 bits (20), Expect = 8.3
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 6      cctcttctgcttcctggcca 25
              ||||||||||||||||||||
Sbjct: 153416 cctcttctgcttcctggcca 153435
to top
>gb|AC160976.2| Mus musculus BAC clone RP24-67M24 from chromosome 9, complete
            sequence
          Length = 184288

 Score = 40.1 bits (20), Expect = 8.3
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 1    ggccgcctcttctgcttcct 20
            ||||||||||||||||||||
Sbjct: 8256 ggccgcctcttctgcttcct 8237
to top
>emb|AL356457.25| Human DNA sequence from clone RP11-145D11 on chromosome 1 Contains part
             of the DPYD gene for dihydropyrimidine dehydrogenase, a
             ribosomal protein L26 (RPL26) pseudogene and a pseudogene
             similar to part of SEC63-like (S. cerevisiae) (SEC63),
             complete sequence
          Length = 120510

 Score = 40.1 bits (20), Expect = 8.3
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 550   ggtttgtagttttgctgatg 569
             ||||||||||||||||||||
Sbjct: 19844 ggtttgtagttttgctgatg 19825
to top
>gb|CP000088.1| Thermobifida fusca YX, complete genome
          Length = 3642249

 Score = 40.1 bits (20), Expect = 8.3
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                   
Query: 217     ccgtccccggcaccgagccg 236
               ||||||||||||||||||||
Sbjct: 2057908 ccgtccccggcaccgagccg 2057889
to top
>emb|BX640451.1| Bordetella bronchiseptica strain RB50, complete genome; segment 15/16
          Length = 343473

 Score = 40.1 bits (20), Expect = 8.3
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 16     ttcctggccatcgcctcctc 35
              ||||||||||||||||||||
Sbjct: 165679 ttcctggccatcgcctcctc 165698
to top
>emb|BX640441.1| Bordetella bronchiseptica strain RB50, complete genome; segment 5/16
          Length = 348624

 Score = 40.1 bits (20), Expect = 8.3
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 16     ttcctggccatcgcctcctc 35
              ||||||||||||||||||||
Sbjct: 242343 ttcctggccatcgcctcctc 242324
to top
>emb|BX640429.1| Bordetella parapertussis strain 12822, complete genome; segment 7/14
          Length = 344321

 Score = 40.1 bits (20), Expect = 8.3
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 16     ttcctggccatcgcctcctc 35
              ||||||||||||||||||||
Sbjct: 188035 ttcctggccatcgcctcctc 188016
to top
>gb|CP000240.1| Synechococcus sp. JA-2-3B'a(2-13), complete genome
          Length = 3046682

 Score = 40.1 bits (20), Expect = 8.3
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                   
Query: 135     aacagcaatgctgactgcct 154
               ||||||||||||||||||||
Sbjct: 2081590 aacagcaatgctgactgcct 2081571



 Score = 40.1 bits (20), Expect = 8.3
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 135    aacagcaatgctgactgcct 154
              ||||||||||||||||||||
Sbjct: 464173 aacagcaatgctgactgcct 464192
to top
>gb|CP000239.1| Synechococcus sp. JA-3-3Ab, complete genome
          Length = 2932766

 Score = 40.1 bits (20), Expect = 8.3
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                   
Query: 451     gcaccagcaccgactccggc 470
               ||||||||||||||||||||
Sbjct: 1450879 gcaccagcaccgactccggc 1450898
to top
>dbj|AK158308.1| Mus musculus adult inner ear cDNA, RIKEN full-length enriched
           library, clone:F930102I21
           product:6-phosphogluconolactonase, full insert sequence
          Length = 2836

 Score = 40.1 bits (20), Expect = 8.3
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                   
Query: 27  cgcctcctccctcctgcaccccgc 50
           |||| |||||||||||||||||||
Sbjct: 623 cgccccctccctcctgcaccccgc 600
to top
>emb|BX247868.13| Zebrafish DNA sequence from clone DKEY-253A1 in linkage group 9,
             complete sequence
          Length = 258322

 Score = 40.1 bits (20), Expect = 8.3
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 76    gctcctcaaggggatcaaca 95
             ||||||||||||||||||||
Sbjct: 34827 gctcctcaaggggatcaaca 34846
to top
>dbj|AP008215.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 9, complete
                sequence
          Length = 22696651

 Score = 40.1 bits (20), Expect = 8.3
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                    
Query: 22       gccatcgcctcctccctcct 41
                ||||||||||||||||||||
Sbjct: 11188065 gccatcgcctcctccctcct 11188046
to top
>gb|AC109134.2| Homo sapiens chromosome 16 clone CTD-2343L8, complete sequence
          Length = 147101

 Score = 40.1 bits (20), Expect = 8.3
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 506   tccttctgtccagccattca 525
             ||||||||||||||||||||
Sbjct: 68201 tccttctgtccagccattca 68182
to top
>gb|AC020763.6| Homo sapiens chromosome 16 clone RP11-394B2, complete sequence
          Length = 200838

 Score = 40.1 bits (20), Expect = 8.3
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 172   agaagttcaaggggcagccg 191
             ||||||||||||||||||||
Sbjct: 31005 agaagttcaaggggcagccg 31024
to top
>gb|AE004604.1| Pseudomonas aeruginosa PAO1, section 165 of 529 of the complete
            genome
          Length = 10798

 Score = 40.1 bits (20), Expect = 8.3
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 451  gcaccagcaccgactccggc 470
            ||||||||||||||||||||
Sbjct: 7304 gcaccagcaccgactccggc 7323
to top
>dbj|BA000039.2| Thermosynechococcus elongatus BP-1 DNA, complete genome
          Length = 2593857

 Score = 40.1 bits (20), Expect = 8.3
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 451    gcaccagcaccgactccggc 470
              ||||||||||||||||||||
Sbjct: 713336 gcaccagcaccgactccggc 713317
to top
>dbj|AP005689.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 9, BAC
             clone:OSJNBa0042H24
          Length = 186313

 Score = 40.1 bits (20), Expect = 8.3
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 22    gccatcgcctcctccctcct 41
             ||||||||||||||||||||
Sbjct: 23237 gccatcgcctcctccctcct 23218
to top
>dbj|AP005685.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 9, BAC
              clone:OSJNBa0004P20
          Length = 160410

 Score = 40.1 bits (20), Expect = 8.3
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 22     gccatcgcctcctccctcct 41
              ||||||||||||||||||||
Sbjct: 146872 gccatcgcctcctccctcct 146853
to top
>dbj|AK065335.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013001H01,
          full insert sequence
          Length = 1724

 Score = 40.1 bits (20), Expect = 8.3
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                              
Query: 22 gccatcgcctcctccctcct 41
          ||||||||||||||||||||
Sbjct: 38 gccatcgcctcctccctcct 57
to top
>gb|AE016825.1| Chromobacterium violaceum ATCC 12472, complete genome
          Length = 4751080

 Score = 40.1 bits (20), Expect = 8.3
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                   
Query: 451     gcaccagcaccgactccggc 470
               ||||||||||||||||||||
Sbjct: 2656452 gcaccagcaccgactccggc 2656471
to top
>gb|AC139320.4| Mus musculus BAC clone RP24-410G8 from 9, complete sequence
          Length = 176888

 Score = 40.1 bits (20), Expect = 8.3
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 1      ggccgcctcttctgcttcct 20
              ||||||||||||||||||||
Sbjct: 155209 ggccgcctcttctgcttcct 155190
to top
>gb|AC162033.11| Mus musculus chromosome 8, clone RP23-162M13, complete sequence
          Length = 217343

 Score = 40.1 bits (20), Expect = 8.3
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                     
Query: 27    cgcctcctccctcctgcaccccgc 50
             |||| |||||||||||||||||||
Sbjct: 57909 cgccccctccctcctgcaccccgc 57886
to top
>gb|L37354.1|SERORF1 Saccharopolyspora erythraea ORF1 and ORF4, partial cds, thymidine
           diphosphoglucose 4,6-dehydratase (gdh) and thymidine
           diphospho-4-keto-6-deoxyglucose 3,5-epimerase (kde)
           genes, complete cds
          Length = 3500

 Score = 40.1 bits (20), Expect = 8.3
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 437 ggtcgtcgtcctcagcacca 456
           ||||||||||||||||||||
Sbjct: 475 ggtcgtcgtcctcagcacca 456


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 4,265,265
Number of Sequences: 3902068
Number of extensions: 4265265
Number of successful extensions: 83825
Number of sequences better than 10.0: 40
Number of HSP's better than 10.0 without gapping: 40
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 83385
Number of HSP's gapped (non-prelim): 433
length of query: 612
length of database: 17,233,045,268
effective HSP length: 23
effective length of query: 589
effective length of database: 17,143,297,704
effective search space: 10097402347656
effective search space used: 10097402347656
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)
to top