ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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| Clone Name | bags7o02 |
|---|---|
| Clone Library Name | barley_pub |
>PABP2_HUMAN (Q86U42) Polyadenylate-binding protein 2 (Poly(A)-binding protein| 2) (PolyA binding protein II) (PABII) (Polyadenylate-binding nuclear protein 1) (Nuclear poly(A)-binding protein 1) Length = 305 Score = 111 bits (277), Expect = 1e-24 Identities = 62/142 (43%), Positives = 80/142 (56%), Gaps = 7/142 (4%) Frame = +1 Query: 127 GAGGDDAAKLHELDXXXXXXXXXXXXXXXXXXXQAKVAKEMQGGDPNATTS------EAK 288 G GD A + EL+ Q +V K+M P E K Sbjct: 106 GDPGDGAIEDPELEAIKARVREMEEEAEKLKELQNEVEKQMNMSPPPGNAGPVIMSIEEK 165 Query: 289 EEMDSRSVFVGNVDYACTPEEVQQHFNSCGTVNRVTILTDKF-GQPKGFAYVEFVEAEAI 465 E D+RS++VGNVDY T EE++ HF+ CG+VNRVTIL DKF G PKGFAY+EF + E++ Sbjct: 166 MEADARSIYVGNVDYGATAEELEAHFHGCGSVNRVTILCDKFSGHPKGFAYIEFSDKESV 225 Query: 466 QEAVKLSESELHGRQIKVAPKR 531 + ++ L ES GRQIKV PKR Sbjct: 226 RTSLALDESLFRGRQIKVIPKR 247
>PABP2_BOVIN (Q28165) Polyadenylate-binding protein 2 (Poly(A)-binding protein| 2) (PolyA-binding protein II) (PABII) (Polyadenylate-binding nuclear protein 1) (Nuclear poly(A)-binding protein 1) Length = 305 Score = 111 bits (277), Expect = 1e-24 Identities = 62/142 (43%), Positives = 80/142 (56%), Gaps = 7/142 (4%) Frame = +1 Query: 127 GAGGDDAAKLHELDXXXXXXXXXXXXXXXXXXXQAKVAKEMQGGDPNATTS------EAK 288 G GD A + EL+ Q +V K+M P E K Sbjct: 106 GDPGDGAIEDPELEAIKARVREMEEEAEKLKELQNEVEKQMNMSPPPGNAGPVIMSIEEK 165 Query: 289 EEMDSRSVFVGNVDYACTPEEVQQHFNSCGTVNRVTILTDKF-GQPKGFAYVEFVEAEAI 465 E D+RS++VGNVDY T EE++ HF+ CG+VNRVTIL DKF G PKGFAY+EF + E++ Sbjct: 166 MEADARSIYVGNVDYGATAEELEAHFHGCGSVNRVTILCDKFSGHPKGFAYIEFSDKESV 225 Query: 466 QEAVKLSESELHGRQIKVAPKR 531 + ++ L ES GRQIKV PKR Sbjct: 226 RTSLALDESLFRGRQIKVIPKR 247
>PABP2_MOUSE (Q8CCS6) Polyadenylate-binding protein 2 (Poly(A)-binding protein| 2) (PolyA binding protein II) (PABII) (Polyadenylate-binding nuclear protein 1) (Nuclear poly(A)-binding protein 1) Length = 301 Score = 110 bits (275), Expect = 2e-24 Identities = 61/139 (43%), Positives = 79/139 (56%), Gaps = 7/139 (5%) Frame = +1 Query: 136 GDDAAKLHELDXXXXXXXXXXXXXXXXXXXQAKVAKEMQGGDPNATTS------EAKEEM 297 GD A + EL+ Q +V K+M P E K E Sbjct: 105 GDGAIEDPELEAIKARVREMEEEAEKLKELQNEVEKQMNMSPPPGNAGPVIMSLEEKMEA 164 Query: 298 DSRSVFVGNVDYACTPEEVQQHFNSCGTVNRVTILTDKF-GQPKGFAYVEFVEAEAIQEA 474 D+RS++VGNVDY T EE++ HF+ CG+VNRVTIL DKF G PKGFAY+EF + E+++ + Sbjct: 165 DARSIYVGNVDYGATAEELEAHFHGCGSVNRVTILCDKFSGHPKGFAYIEFSDKESVRTS 224 Query: 475 VKLSESELHGRQIKVAPKR 531 + L ES GRQIKV PKR Sbjct: 225 LALDESLFRGRQIKVIPKR 243
>PAB2_SCHPO (O14327) Polyadenylate-binding protein 2 (Poly(A)-binding protein| 2) (Poly(A)-binding protein II) (PABII) Length = 166 Score = 107 bits (267), Expect = 2e-23 Identities = 52/83 (62%), Positives = 64/83 (77%), Gaps = 1/83 (1%) Frame = +1 Query: 286 KEEMDSRSVFVGNVDYACTPEEVQQHFNSCGTVNRVTILTDKF-GQPKGFAYVEFVEAEA 462 KE +D++SV+VGNVDY+ TPEE+Q HF SCG+VNRVTIL DKF G PKGFAY+EF E Sbjct: 49 KESIDAQSVYVGNVDYSVTPEELQSHFASCGSVNRVTILCDKFTGHPKGFAYIEFSEPSL 108 Query: 463 IQEAVKLSESELHGRQIKVAPKR 531 + A+ L+ S LH R +KV PKR Sbjct: 109 VPNALLLNGSMLHERPLKVTPKR 131
>YQOC_CAEEL (Q09301) Putative RNA-binding protein EEED8.12| Length = 197 Score = 80.9 bits (198), Expect = 2e-15 Identities = 42/103 (40%), Positives = 64/103 (62%), Gaps = 1/103 (0%) Frame = +1 Query: 226 QAKVAKEMQGGDPNATTSEAKEEMDSRSVFVGNVDYACTPEEVQQHFNSCGTVNRVTILT 405 Q K+AK ++ T E ++ +D++SVF+GNVD+ T EEV++HF CG + R TI Sbjct: 35 QNKMAKNLESAAYVPPTEEEQKAIDAKSVFIGNVDFNSTIEEVEEHFKGCGHIVRTTIPK 94 Query: 406 DKF-GQPKGFAYVEFVEAEAIQEAVKLSESELHGRQIKVAPKR 531 DKF + K FAY+EF ++ +I+ A+ ++ S R I V KR Sbjct: 95 DKFTKKQKNFAYIEFDDSSSIENALVMNGSLFRSRPIVVTAKR 137
>YQO4_CAEEL (Q09295) Putative RNA-binding protein EEED8.4| Length = 237 Score = 79.7 bits (195), Expect = 5e-15 Identities = 40/103 (38%), Positives = 64/103 (62%), Gaps = 1/103 (0%) Frame = +1 Query: 226 QAKVAKEMQGGDPNATTSEAKEEMDSRSVFVGNVDYACTPEEVQQHFNSCGTVNRVTILT 405 Q K+AK ++ T E ++ +D++SVF+GNVD+ T EE+++HF CG + + TI Sbjct: 75 QNKMAKHLESAAYVPPTEEEQKAIDAKSVFIGNVDFNSTIEEIEEHFKGCGQIVKTTIPK 134 Query: 406 DKF-GQPKGFAYVEFVEAEAIQEAVKLSESELHGRQIKVAPKR 531 DKF + K FAY+EF ++ +I+ A+ ++ S R I V KR Sbjct: 135 DKFTKKQKNFAYIEFDDSSSIENALVMNGSLFRSRPIVVTAKR 177
>SGN1_YEAST (P40561) RNA-binding protein SGN1| Length = 250 Score = 79.7 bits (195), Expect = 5e-15 Identities = 40/100 (40%), Positives = 61/100 (61%), Gaps = 8/100 (8%) Frame = +1 Query: 256 GDPNATTSEAKEEM-------DSRSVFVGNVDYACTPEEVQQHFNSCGTVNRVTILTDK- 411 G P + +KEE DSRS+FVGN+ TPE+++ HF CG + R+T+L D+ Sbjct: 41 GTPQVSQKLSKEEKHAHQLEADSRSIFVGNITPDVTPEQIEDHFKDCGQIKRITLLYDRN 100 Query: 412 FGQPKGFAYVEFVEAEAIQEAVKLSESELHGRQIKVAPKR 531 G PKG+ Y+EF ++A++L+ EL G++I V+ KR Sbjct: 101 TGTPKGYGYIEFESPAYREKALQLNGGELKGKKIAVSRKR 140
>RBM34_HUMAN (P42696) RNA-binding protein 34 (RNA-binding motif protein 34)| Length = 430 Score = 66.6 bits (161), Expect = 4e-11 Identities = 33/75 (44%), Positives = 48/75 (64%), Gaps = 1/75 (1%) Frame = +1 Query: 298 DSRSVFVGNVDYACTPEEVQQHFNSCGTVNRVTILTDKF-GQPKGFAYVEFVEAEAIQEA 474 D RSVFVGN+ Y +++HF CG++ V I+ DK G KGF YV F +++ A Sbjct: 285 DKRSVFVGNLPYKVEESAIEKHFLDCGSIMAVRIVRDKMTGIGKGFGYVLFENTDSVHLA 344 Query: 475 VKLSESELHGRQIKV 519 +KL+ SEL GR+++V Sbjct: 345 LKLNNSELMGRKLRV 359
>RBM34_RAT (Q5M9F1) RNA-binding protein 34 (RNA-binding motif protein 34)| Length = 428 Score = 62.0 bits (149), Expect = 1e-09 Identities = 31/75 (41%), Positives = 47/75 (62%), Gaps = 1/75 (1%) Frame = +1 Query: 298 DSRSVFVGNVDYACTPEEVQQHFNSCGTVNRVTILTDKF-GQPKGFAYVEFVEAEAIQEA 474 D RSVFVGN+ Y +++HF CG++ V I+ + G +GF YV F +A+ A Sbjct: 283 DKRSVFVGNLPYRVDESALEEHFLDCGSIVAVRIVRNPLTGVGRGFGYVLFENTDAVHLA 342 Query: 475 VKLSESELHGRQIKV 519 +KL+ SEL GR+++V Sbjct: 343 LKLNNSELMGRKLRV 357
>RBM34_MOUSE (Q8C5L7) RNA-binding protein 34 (RNA-binding motif protein 34)| Length = 375 Score = 62.0 bits (149), Expect = 1e-09 Identities = 31/75 (41%), Positives = 47/75 (62%), Gaps = 1/75 (1%) Frame = +1 Query: 298 DSRSVFVGNVDYACTPEEVQQHFNSCGTVNRVTILTDKF-GQPKGFAYVEFVEAEAIQEA 474 D RSVFVGN+ Y +++HF CG++ V I+ + G +GF YV F +A+ A Sbjct: 289 DKRSVFVGNLPYKIEDSALEEHFLDCGSIVAVRIVRNPLTGVGRGFGYVLFENTDAVHLA 348 Query: 475 VKLSESELHGRQIKV 519 +KL+ SEL GR+++V Sbjct: 349 LKLNNSELMGRKLRV 363
>NOP12_KLULA (Q6CKV6) Nucleolar protein 12| Length = 524 Score = 59.3 bits (142), Expect = 6e-09 Identities = 28/67 (41%), Positives = 43/67 (64%), Gaps = 1/67 (1%) Frame = +1 Query: 304 RSVFVGNVDYACTPEEVQQHFNSCGTVNRVTILTD-KFGQPKGFAYVEFVEAEAIQEAVK 480 RSVFVGN+D+ E + +HF CG + V I+ D K KGFAYV+F + +++ +A+ Sbjct: 359 RSVFVGNLDFEEVEESLWKHFEPCGDIEYVRIIRDSKTNMGKGFAYVQFKDFQSVSKALL 418 Query: 481 LSESELH 501 L E ++H Sbjct: 419 LHEKKIH 425
>DAZL_CHICK (Q804A9) Deleted in azoospermia-like (DAZ-like protein)| Length = 289 Score = 58.5 bits (140), Expect = 1e-08 Identities = 26/73 (35%), Positives = 46/73 (63%) Frame = +1 Query: 307 SVFVGNVDYACTPEEVQQHFNSCGTVNRVTILTDKFGQPKGFAYVEFVEAEAIQEAVKLS 486 +VFVG +D E++ +F GTV V I+TD+ G KG+ +V F++ +Q+ V+ S Sbjct: 37 TVFVGGIDIRMNEAEIRSYFEQYGTVKEVKIITDRTGVSKGYGFVSFLDNVDVQKIVE-S 95 Query: 487 ESELHGRQIKVAP 525 + +HG+++K+ P Sbjct: 96 QISVHGKRLKLGP 108
>NOP12_CANGA (Q6FUS6) Nucleolar protein 12| Length = 396 Score = 58.2 bits (139), Expect = 1e-08 Identities = 28/66 (42%), Positives = 44/66 (66%), Gaps = 1/66 (1%) Frame = +1 Query: 304 RSVFVGNVDYACTPEEVQQHFNSCGTVNRVTILTD-KFGQPKGFAYVEFVEAEAIQEAVK 480 RSVFVGN+D+ E + +HF +CG++ V I+ D K KGFAYV+F E +++ +A+ Sbjct: 228 RSVFVGNLDFEEDEESLWKHFGACGSIEYVRIVRDPKTNMGKGFAYVQFNELQSVSKALL 287 Query: 481 LSESEL 498 L+E + Sbjct: 288 LNEKPM 293
>NOP12_ASHGO (Q75BJ7) Nucleolar protein 12| Length = 426 Score = 57.8 bits (138), Expect = 2e-08 Identities = 30/76 (39%), Positives = 50/76 (65%), Gaps = 4/76 (5%) Frame = +1 Query: 304 RSVFVGNVDYACTPEEVQQHFNSCGTVNRVTILTD-KFGQPKGFAYVEFVEAEAIQEAVK 480 RSVFVGN+D+ + E + +HF SCG + V I+ D K KGFAYV+F + ++ +A+ Sbjct: 259 RSVFVGNLDFEESEESLWKHFMSCGPIEYVRIVRDPKTNVGKGFAYVQFADLVSVNKALL 318 Query: 481 LSESEL---HGRQIKV 519 L++ ++ GR+++V Sbjct: 319 LNDKKMAVGKGRKLRV 334
>PABPX_ARATH (Q9ZQA8) Probable polyadenylate-binding protein At2g36660| (Poly(A)-binding protein At2g36660) (PABP) Length = 609 Score = 57.4 bits (137), Expect = 2e-08 Identities = 27/73 (36%), Positives = 46/73 (63%), Gaps = 1/73 (1%) Frame = +1 Query: 307 SVFVGNVDYACTPEEVQQHFNSCGTVNRVTILTDKFGQPKGFAYVEFVEAEAIQEAVKLS 486 +++V NV+ A T EE+++HF+ CGT+ ++ D+ G+ KGF +V F E +AVK Sbjct: 305 NIYVKNVNVAVTEEELRKHFSQCGTITSTKLMCDEKGKSKGFGFVCFSTPEEAIDAVKTF 364 Query: 487 ESEL-HGRQIKVA 522 ++ HG+ + VA Sbjct: 365 HGQMFHGKPLYVA 377 Score = 29.3 bits (64), Expect = 7.1 Identities = 18/80 (22%), Positives = 37/80 (46%) Frame = +1 Query: 241 KEMQGGDPNATTSEAKEEMDSRSVFVGNVDYACTPEEVQQHFNSCGTVNRVTILTDKFGQ 420 KE+ G T K E ++++ N+D + + +++ F G + + I D+ Sbjct: 180 KEIYVGKFMKKTDRVKPEEKYTNLYMKNLDADVSEDLLREKFAEFGKIVSLAIAKDENRL 239 Query: 421 PKGFAYVEFVEAEAIQEAVK 480 +G+A+V F E + A + Sbjct: 240 CRGYAFVNFDNPEDARRAAE 259
>NOP12_YEAST (Q08208) Nucleolar protein 12| Length = 459 Score = 56.2 bits (134), Expect = 5e-08 Identities = 26/70 (37%), Positives = 44/70 (62%), Gaps = 1/70 (1%) Frame = +1 Query: 304 RSVFVGNVDYACTPEEVQQHFNSCGTVNRVTILTD-KFGQPKGFAYVEFVEAEAIQEAVK 480 RS+FVGN+D+ E + +HF CG + V I+ D K KGFAYV+F + +++ +A+ Sbjct: 279 RSIFVGNLDFEEIEESLWKHFEPCGDIEYVRIIRDSKTNMGKGFAYVQFKDLQSVNKALL 338 Query: 481 LSESELHGRQ 510 L+E + ++ Sbjct: 339 LNEKPMKSQK 348
>DAZL_MOUSE (Q64368) Deleted in azoospermia-like (DAZ-like autosomal) (Deleted| in azoospermia-like 1) Length = 298 Score = 55.8 bits (133), Expect = 7e-08 Identities = 31/101 (30%), Positives = 55/101 (54%), Gaps = 4/101 (3%) Frame = +1 Query: 235 VAKEMQGGDPNATTSEA----KEEMDSRSVFVGNVDYACTPEEVQQHFNSCGTVNRVTIL 402 V++E +ATTS+ + ++ +VFVG +D E++ F G+V V I+ Sbjct: 13 VSREASTQSSSATTSQGYVLPEGKIMPNTVFVGGIDVRMDETEIRSFFARYGSVKEVKII 72 Query: 403 TDKFGQPKGFAYVEFVEAEAIQEAVKLSESELHGRQIKVAP 525 TD+ G KG+ +V F +Q+ V+ S+ HG+++K+ P Sbjct: 73 TDRTGVSKGYGFVSFYNDVDVQKIVE-SQINFHGKKLKLGP 112
>SART3_PONPY (Q5REG1) Squamous cell carcinoma antigen recognized by T-cells 3| (SART-3) Length = 981 Score = 53.9 bits (128), Expect = 3e-07 Identities = 26/89 (29%), Positives = 51/89 (57%), Gaps = 1/89 (1%) Frame = +1 Query: 259 DPNATTSEAKEEMDSRSVFVGNVDYACTPEEVQQHFNSCGTVNRVTILTDKFGQPKGFAY 438 +P+ ++ +F+ + ++CT EE+++ + GTV + ++T++ G+PKG AY Sbjct: 804 NPDFKVFRYSTSLEKHKLFISGLPFSCTKEELEEICKAHGTVKDLRLVTNRAGKPKGLAY 863 Query: 439 VEFV-EAEAIQEAVKLSESELHGRQIKVA 522 VE+ E++A Q +K+ + IKVA Sbjct: 864 VEYENESQASQAVMKMDGMTIKENVIKVA 892 Score = 45.1 bits (105), Expect = 1e-04 Identities = 23/78 (29%), Positives = 43/78 (55%), Gaps = 2/78 (2%) Frame = +1 Query: 298 DSRSVFVGNVDYACTPEEVQQH--FNSCGTVNRVTILTDKFGQPKGFAYVEFVEAEAIQE 471 DS +VFV N+ Y+ + + F +CG V ++ + G +G+ YVEF E ++ + Sbjct: 720 DSITVFVSNLPYSMQEPDAKLRPLFEACGEVVQIRPIFSNRGDFRGYRYVEFKEEKSALQ 779 Query: 472 AVKLSESELHGRQIKVAP 525 A+++ + GR + V+P Sbjct: 780 ALEMDRKSVEGRPMFVSP 797
>SART3_HUMAN (Q15020) Squamous cell carcinoma antigen recognized by T-cells 3| (SART-3) (hSART-3) (Tat-interacting protein of 110 kDa) (Tip110) Length = 963 Score = 53.5 bits (127), Expect = 3e-07 Identities = 26/89 (29%), Positives = 51/89 (57%), Gaps = 1/89 (1%) Frame = +1 Query: 259 DPNATTSEAKEEMDSRSVFVGNVDYACTPEEVQQHFNSCGTVNRVTILTDKFGQPKGFAY 438 +P+ ++ +F+ + ++CT EE+++ + GTV + ++T++ G+PKG AY Sbjct: 786 NPDFKVFRYSTSLEKHKLFISGLPFSCTKEELEEICKAHGTVKDLRLVTNRAGKPKGLAY 845 Query: 439 VEFV-EAEAIQEAVKLSESELHGRQIKVA 522 VE+ E++A Q +K+ + IKVA Sbjct: 846 VEYENESQASQAVMKMDGMTIKENIIKVA 874 Score = 45.4 bits (106), Expect = 1e-04 Identities = 23/78 (29%), Positives = 43/78 (55%), Gaps = 2/78 (2%) Frame = +1 Query: 298 DSRSVFVGNVDYACTPEEVQQH--FNSCGTVNRVTILTDKFGQPKGFAYVEFVEAEAIQE 471 DS +VFV N+ Y+ + + F +CG V ++ + G +G+ YVEF E ++ + Sbjct: 702 DSITVFVSNLPYSMQEPDTKLRPLFEACGEVVQIRPIFSNRGDFRGYCYVEFKEEKSALQ 761 Query: 472 AVKLSESELHGRQIKVAP 525 A+++ + GR + V+P Sbjct: 762 ALEMDRKSVEGRPMFVSP 779
>DAZL_HUMAN (Q92904) Deleted in azoospermia-like (DAZ-like autosomal) (Deleted| in azoospermia-like 1) (DAZ homolog) (SPGY-like-autosomal) Length = 295 Score = 53.5 bits (127), Expect = 3e-07 Identities = 29/101 (28%), Positives = 54/101 (53%), Gaps = 4/101 (3%) Frame = +1 Query: 235 VAKEMQGGDPNATTSEA----KEEMDSRSVFVGNVDYACTPEEVQQHFNSCGTVNRVTIL 402 +++E +A TS+ + ++ +VFVG +D E++ F G+V V I+ Sbjct: 13 ISREASTQSSSAATSQGYILPEGKIMPNTVFVGGIDVRMDETEIRSFFARYGSVKEVKII 72 Query: 403 TDKFGQPKGFAYVEFVEAEAIQEAVKLSESELHGRQIKVAP 525 TD+ G KG+ +V F +Q+ V+ S+ HG+++K+ P Sbjct: 73 TDRTGVSKGYGFVSFFNDVDVQKIVE-SQINFHGKKLKLGP 112
>SART3_MOUSE (Q9JLI8) Squamous cell carcinoma antigen recognized by T-cells 3| (SART-3) (mSART-3) (Tumor-rejection antigen SART3) Length = 962 Score = 53.1 bits (126), Expect = 5e-07 Identities = 25/77 (32%), Positives = 47/77 (61%), Gaps = 1/77 (1%) Frame = +1 Query: 295 MDSRSVFVGNVDYACTPEEVQQHFNSCGTVNRVTILTDKFGQPKGFAYVEFV-EAEAIQE 471 ++ +F+ + ++CT EE++ + GTV + ++T++ G+PKG AYVE+ E++A Q Sbjct: 798 LEKHKLFISGLPFSCTKEELEDICKAHGTVKDLRLVTNRAGKPKGLAYVEYENESQASQA 857 Query: 472 AVKLSESELHGRQIKVA 522 +K+ + IKVA Sbjct: 858 VMKMDGMTIRENVIKVA 874 Score = 48.9 bits (115), Expect = 9e-06 Identities = 27/78 (34%), Positives = 44/78 (56%), Gaps = 2/78 (2%) Frame = +1 Query: 298 DSRSVFVGNVDYACTPEEVQQH--FNSCGTVNRVTILTDKFGQPKGFAYVEFVEAEAIQE 471 DS +VFV N+ Y+ EV+ F CG V ++ + G +G+ YVEF E ++ Q+ Sbjct: 702 DSVTVFVSNLPYSIEEPEVKLRPLFEVCGEVVQIRPIFSNRGDFRGYCYVEFGEEKSAQQ 761 Query: 472 AVKLSESELHGRQIKVAP 525 A++L + GR + V+P Sbjct: 762 ALELDRKIVEGRPMFVSP 779
>SQD_DROME (Q08473) RNA-binding protein squid (Heterogeneous nuclear| ribonucleoprotein 40) (HNRNP 40) Length = 344 Score = 53.1 bits (126), Expect = 5e-07 Identities = 29/102 (28%), Positives = 52/102 (50%), Gaps = 1/102 (0%) Frame = +1 Query: 229 AKVAKEMQGGDPNATTSEAKEEMDSRSVFVGNVDYACTPEEVQQHFNSCGTVNRVTILTD 408 A A G N + + + + D R +FVG + + T +E++ HF G + + + TD Sbjct: 32 AGAAGSTNGSSDNQSAASGQRD-DDRKLFVGGLSWETTEKELRDHFGKYGEIESINVKTD 90 Query: 409 -KFGQPKGFAYVEFVEAEAIQEAVKLSESELHGRQIKVAPKR 531 + G+ +GFA++ F EAI + E ++ + KV PK+ Sbjct: 91 PQTGRSRGFAFIVFTNTEAIDKVSAADEHIINSK--KVDPKK 130 Score = 38.9 bits (89), Expect = 0.009 Identities = 18/71 (25%), Positives = 38/71 (53%), Gaps = 1/71 (1%) Frame = +1 Query: 310 VFVGNVDYACTPEEVQQHFNSCGTVNRVTILTDK-FGQPKGFAYVEFVEAEAIQEAVKLS 486 +FVG + + EE++ +F G + V + DK Q KGF ++ F + + + +K Sbjct: 138 IFVGGLTTEISDEEIKTYFGQFGNIVEVEMPFDKQKSQRKGFCFITFDSEQVVTDLLKTP 197 Query: 487 ESELHGRQIKV 519 + ++ G+++ V Sbjct: 198 KQKIAGKEVDV 208
>DAZL_CALJA (Q9BGN8) Deleted in azoospermia-like (DAZ-like autosomal) (Deleted| in azoospermia-like 1) Length = 296 Score = 52.8 bits (125), Expect = 6e-07 Identities = 29/101 (28%), Positives = 54/101 (53%), Gaps = 4/101 (3%) Frame = +1 Query: 235 VAKEMQGGDPNATTSEA----KEEMDSRSVFVGNVDYACTPEEVQQHFNSCGTVNRVTIL 402 +++E +A TS+ + ++ +VFVG +D E++ F G+V V I+ Sbjct: 13 ISREANTQSSSAATSQGYVLPEGKIMPNTVFVGGIDVRMDETEIRGFFARYGSVKEVKII 72 Query: 403 TDKFGQPKGFAYVEFVEAEAIQEAVKLSESELHGRQIKVAP 525 TD+ G KG+ +V F +Q+ V+ S+ HG+++K+ P Sbjct: 73 TDRTGVSKGYGFVSFFNDVDVQKIVE-SQINFHGKKLKLGP 112
>DAZL_MACFA (Q95192) Deleted in azoospermia-like (DAZ-like autosomal) (Deleted| in azoospermia-like 1) Length = 295 Score = 52.4 bits (124), Expect = 8e-07 Identities = 25/73 (34%), Positives = 42/73 (57%) Frame = +1 Query: 307 SVFVGNVDYACTPEEVQQHFNSCGTVNRVTILTDKFGQPKGFAYVEFVEAEAIQEAVKLS 486 +VFVG +D E++ F G+V V I+TD+ G KG+ +V F +Q+ V+ S Sbjct: 41 TVFVGGIDVRMDETEIRSFFARYGSVKEVKIITDRTGVSKGYGFVSFFNDVDVQKIVE-S 99 Query: 487 ESELHGRQIKVAP 525 + HG+++K+ P Sbjct: 100 QINFHGKKLKLGP 112
>RBM11_HUMAN (P57052) Putative RNA-binding protein 11 (RNA-binding motif protein| 11) Length = 281 Score = 52.0 bits (123), Expect = 1e-06 Identities = 31/80 (38%), Positives = 46/80 (57%), Gaps = 1/80 (1%) Frame = +1 Query: 283 AKEEMDSRSVFVGNVDYACTPEEVQQHFNSCGTVNRVTILTDKFGQPKGFAYVEFVEAEA 462 A+EE D R+VFVGN++ E + + F G + +VTI D+ G+PK F +V F E+ Sbjct: 4 AQEEAD-RTVFVGNLEARVREEILYELFLQAGPLTKVTICKDREGKPKSFGFVCFKHPES 62 Query: 463 IQEAVKLSES-ELHGRQIKV 519 + A+ L L+GR I V Sbjct: 63 VSYAIALLNGIRLYGRPINV 82
>DAZP1_XENLA (Q98SJ2) DAZ-associated protein 1 (Deleted in| azoospermia-associated protein 1) (Proline-rich Vg1 mRNA-binding protein) Length = 360 Score = 52.0 bits (123), Expect = 1e-06 Identities = 22/78 (28%), Positives = 46/78 (58%), Gaps = 1/78 (1%) Frame = +1 Query: 289 EEMDSRSVFVGNVDYACTPEEVQQHFNSCGTVNRVTILTDKFGQ-PKGFAYVEFVEAEAI 465 E S +FVG + + C E++++FN G V V ++ D Q P+GF ++ F + +++ Sbjct: 109 ENSRSNKIFVGGIPHNCGETELKEYFNRFGVVTEVVMIYDAEKQRPRGFGFITFEDEQSV 168 Query: 466 QEAVKLSESELHGRQIKV 519 +AV + ++ G++++V Sbjct: 169 DQAVNMHFHDIMGKKVEV 186
>RU17_ARATH (Q42404) U1 small nuclear ribonucleoprotein 70 kDa (U1 snRNP 70| kDa) (snRNP70) (U1-70K) Length = 427 Score = 51.6 bits (122), Expect = 1e-06 Identities = 26/102 (25%), Positives = 61/102 (59%), Gaps = 2/102 (1%) Frame = +1 Query: 232 KVAKEMQGGDPNATTSEAKEEMDSRSVFVGNVDYACTPEEVQQHFNSCGTVNRVTILTDK 411 K A++++ DPN + + +++FV ++Y + ++++ F S G + RV ++TD+ Sbjct: 116 KAAEDLKKYDPNNDPNATGDPY--KTLFVSRLNYESSESKIKREFESYGPIKRVHLVTDQ 173 Query: 412 F-GQPKGFAYVEFVEAEAIQEAVKLSESE-LHGRQIKVAPKR 531 +PKG+A++E++ ++ A K ++ + + GR++ V +R Sbjct: 174 LTNKPKGYAFIEYMHTRDMKAAYKQADGQKIDGRRVLVDVER 215
>NOP12_SCHPO (O13741) Nucleolar protein 12| Length = 438 Score = 51.2 bits (121), Expect = 2e-06 Identities = 25/74 (33%), Positives = 46/74 (62%), Gaps = 2/74 (2%) Frame = +1 Query: 304 RSVFVGNVDYACTPEEVQQHFNSCGTVNRVTILTD-KFGQPKGFAYVEFVEAEAIQEAVK 480 R VFVGN+ + E + ++F CG+++ V I+ D K KGFAY++F + + +A+ Sbjct: 270 RCVFVGNLAFEAEEEPLWRYFGDCGSIDYVRIVRDPKTNLGKGFAYIQFKDTMGVDKALL 329 Query: 481 LSESEL-HGRQIKV 519 L+E ++ GR +++ Sbjct: 330 LNEKKMPEGRTLRI 343
>CSTFT_MOUSE (Q8C7E9) Cleavage stimulation factor, 64 kDa subunit, tau variant| (CSTF 64 kDa subunit, tau variant) (CF-1 64 kDa subunit, tau variant) (TauCstF-64) Length = 632 Score = 49.7 bits (117), Expect = 5e-06 Identities = 26/74 (35%), Positives = 45/74 (60%), Gaps = 2/74 (2%) Frame = +1 Query: 304 RSVFVGNVDYACTPEEVQQHFNSCGTVNRVTILTDK-FGQPKGFAYVEFVEAEAIQEAVK 480 RSVFVGN+ Y T E+++ F+ G+V ++ D+ G+PKG+ + E+ + E A++ Sbjct: 16 RSVFVGNIPYEATEEQLKDIFSEVGSVVSFRLVYDRETGKPKGYGFCEYQDQETALSAMR 75 Query: 481 -LSESELHGRQIKV 519 L+ E GR ++V Sbjct: 76 NLNGREFSGRALRV 89
>CSTFT_HUMAN (Q9H0L4) Cleavage stimulation factor, 64 kDa subunit, tau variant| (CSTF 64 kDa subunit, tau variant) (CF-1 64 kDa subunit, tau variant) (TauCstF-64) Length = 616 Score = 49.7 bits (117), Expect = 5e-06 Identities = 26/74 (35%), Positives = 45/74 (60%), Gaps = 2/74 (2%) Frame = +1 Query: 304 RSVFVGNVDYACTPEEVQQHFNSCGTVNRVTILTDK-FGQPKGFAYVEFVEAEAIQEAVK 480 RSVFVGN+ Y T E+++ F+ G+V ++ D+ G+PKG+ + E+ + E A++ Sbjct: 16 RSVFVGNIPYEATEEQLKDIFSEVGSVVSFRLVYDRETGKPKGYGFCEYQDQETALSAMR 75 Query: 481 -LSESELHGRQIKV 519 L+ E GR ++V Sbjct: 76 NLNGREFSGRALRV 89
>DAZ4_HUMAN (Q86SG3) Deleted in azoospermia protein 4| Length = 579 Score = 49.7 bits (117), Expect = 5e-06 Identities = 25/73 (34%), Positives = 41/73 (56%) Frame = +1 Query: 307 SVFVGNVDYACTPEEVQQHFNSCGTVNRVTILTDKFGQPKGFAYVEFVEAEAIQEAVKLS 486 +VFVG +D E+ F G+V V I+T++ G KG+ +V FV +Q+ V S Sbjct: 206 TVFVGGIDARMDETEIGSCFGRYGSVKEVKIITNRTGVSKGYGFVSFVNDVDVQKIVG-S 264 Query: 487 ESELHGRQIKVAP 525 + HG+++K+ P Sbjct: 265 QIHFHGKKLKLGP 277 Score = 49.7 bits (117), Expect = 5e-06 Identities = 25/73 (34%), Positives = 41/73 (56%) Frame = +1 Query: 307 SVFVGNVDYACTPEEVQQHFNSCGTVNRVTILTDKFGQPKGFAYVEFVEAEAIQEAVKLS 486 +VFVG +D E+ F G+V V I+T++ G KG+ +V FV +Q+ V S Sbjct: 41 TVFVGGIDARMDETEIGSCFGRYGSVKEVKIITNRTGVSKGYGFVSFVNDVDVQKIVG-S 99 Query: 487 ESELHGRQIKVAP 525 + HG+++K+ P Sbjct: 100 QIHFHGKKLKLGP 112
>NUCL_XENLA (P20397) Nucleolin (Protein C23)| Length = 650 Score = 49.7 bits (117), Expect = 5e-06 Identities = 26/97 (26%), Positives = 50/97 (51%) Frame = +1 Query: 229 AKVAKEMQGGDPNATTSEAKEEMDSRSVFVGNVDYACTPEEVQQHFNSCGTVNRVTILTD 408 AK KEM P A ++ + S+F+GN++ +E++ + +TI Sbjct: 207 AKRKKEMPKTIPEAKKTKTDTASEGLSIFIGNLNSTKEFDELKDALREFFSKKNLTIQDI 266 Query: 409 KFGQPKGFAYVEFVEAEAIQEAVKLSESELHGRQIKV 519 + G K F YV+F E +++A+KL+ ++ G ++K+ Sbjct: 267 RIGNSKKFGYVDFSSEEEVEKALKLTGKKILGTEVKI 303 Score = 43.1 bits (100), Expect = 5e-04 Identities = 35/153 (22%), Positives = 68/153 (44%), Gaps = 10/153 (6%) Frame = +1 Query: 91 QEIPVDAEDVEMGAGGDDAAKLHELDXXXXXXXXXXXXXXXXXXXQAKVAKEMQG----- 255 QEI +A+D+ + G D + K + K E++G Sbjct: 341 QEIFENAKDIRIPTGKDGSNK-------GIAYVEFSNEDEANKALEEKQGAEIEGRSIFV 393 Query: 256 ---GDPNATTSEAK-EEMDSRSVFVGNVDYACTPEEVQQHFNSCGTVNRVTILTDKFGQP 423 G+ + + K E DS+ + V N+ Y+ T + +++ F ++ + G+ Sbjct: 394 DFTGEKSQNSGNKKGPEGDSKVLVVNNLSYSATEDSLREVFEKATSIR----IPQNQGRA 449 Query: 424 KGFAYVEFVEAEAIQEAV-KLSESELHGRQIKV 519 KGFA++EF AE ++A+ + +E+ GR I++ Sbjct: 450 KGFAFIEFSSAEDAKDAMDSCNNTEIEGRSIRL 482 Score = 34.7 bits (78), Expect = 0.17 Identities = 24/89 (26%), Positives = 44/89 (49%), Gaps = 1/89 (1%) Frame = +1 Query: 250 QGGDPNATTSEAKEEMDSRSVFVGNVDYACTPEEVQQHFNSCGTVNRVTILTDKFGQPKG 429 QGG P + S+++FV + T E +++ F+ G+VN + G KG Sbjct: 486 QGGGPQGGGRGGSAQ--SKTLFVRGLSEDTTEETLKEAFD--GSVNARIVTDRDTGASKG 541 Query: 430 FAYVEFVEAEAIQEAVK-LSESELHGRQI 513 F +V+F AE + A + + + E+ G ++ Sbjct: 542 FGFVDFSTAEDAKAAKEAMEDGEIDGNKV 570
>RNP24_SCHPO (Q09100) RNA-binding protein rnp24| Length = 369 Score = 49.7 bits (117), Expect = 5e-06 Identities = 24/76 (31%), Positives = 47/76 (61%), Gaps = 1/76 (1%) Frame = +1 Query: 268 ATTSEAKEEMDSRSVFVGNVDYACTPEEVQQHFNSCGTVNRVTILT-DKFGQPKGFAYVE 444 A+ +K+E S +FVGN+D+ T ++++HF G + RV ++T + G+ KGF +V+ Sbjct: 217 ASIQSSKKEPSS-ILFVGNLDFETTDADLKEHFGQVGQIRRVRLMTFEDTGKCKGFGFVD 275 Query: 445 FVEAEAIQEAVKLSES 492 F + + +A++L + Sbjct: 276 FPDIDTCMKAMELGHN 291 Score = 36.2 bits (82), Expect = 0.058 Identities = 17/38 (44%), Positives = 26/38 (68%) Frame = +1 Query: 406 DKFGQPKGFAYVEFVEAEAIQEAVKLSESELHGRQIKV 519 +K Q KGFAYV+F +A++ A++ SE L+GR I + Sbjct: 159 EKRFQNKGFAYVDFATEDALKLALQCSEKALNGRNILI 196
>DAZ1_HUMAN (Q9NQZ3) Deleted in azoospermia protein 1| Length = 744 Score = 49.7 bits (117), Expect = 5e-06 Identities = 25/73 (34%), Positives = 41/73 (56%) Frame = +1 Query: 307 SVFVGNVDYACTPEEVQQHFNSCGTVNRVTILTDKFGQPKGFAYVEFVEAEAIQEAVKLS 486 +VFVG +D E+ F G+V V I+T++ G KG+ +V FV +Q+ V S Sbjct: 371 TVFVGGIDARMDETEIGSCFGRYGSVKEVKIITNRTGVSKGYGFVSFVNDVDVQKIVG-S 429 Query: 487 ESELHGRQIKVAP 525 + HG+++K+ P Sbjct: 430 QIHFHGKKLKLGP 442 Score = 49.7 bits (117), Expect = 5e-06 Identities = 25/73 (34%), Positives = 41/73 (56%) Frame = +1 Query: 307 SVFVGNVDYACTPEEVQQHFNSCGTVNRVTILTDKFGQPKGFAYVEFVEAEAIQEAVKLS 486 +VFVG +D E+ F G+V V I+T++ G KG+ +V FV +Q+ V S Sbjct: 206 TVFVGGIDARMDETEIGSCFGRYGSVKEVKIITNRTGVSKGYGFVSFVNDVDVQKIVG-S 264 Query: 487 ESELHGRQIKVAP 525 + HG+++K+ P Sbjct: 265 QIHFHGKKLKLGP 277 Score = 49.7 bits (117), Expect = 5e-06 Identities = 25/73 (34%), Positives = 41/73 (56%) Frame = +1 Query: 307 SVFVGNVDYACTPEEVQQHFNSCGTVNRVTILTDKFGQPKGFAYVEFVEAEAIQEAVKLS 486 +VFVG +D E+ F G+V V I+T++ G KG+ +V FV +Q+ V S Sbjct: 41 TVFVGGIDARMDETEIGSCFGRYGSVKEVKIITNRTGVSKGYGFVSFVNDVDVQKIVG-S 99 Query: 487 ESELHGRQIKVAP 525 + HG+++K+ P Sbjct: 100 QIHFHGKKLKLGP 112
>RBM7_HUMAN (Q9Y580) RNA-binding protein 7 (RNA-binding motif protein 7)| Length = 266 Score = 49.7 bits (117), Expect = 5e-06 Identities = 28/73 (38%), Positives = 44/73 (60%), Gaps = 1/73 (1%) Frame = +1 Query: 304 RSVFVGNVDYACTPEEVQQHFNSCGTVNRVTILTDKFGQPKGFAYVEFVEAEAIQEAVKL 483 R++FVGN++ T E + + F+ G V +V I DK G+PK FA+V F ++ A+ L Sbjct: 10 RTLFVGNLETKVTEELLFELFHQAGPVIKVKIPKDKDGKPKQFAFVNFKHEVSVPYAMNL 69 Query: 484 SES-ELHGRQIKV 519 +L+GR IK+ Sbjct: 70 LNGIKLYGRPIKI 82
>DAZ2_HUMAN (Q13117) Deleted in azoospermia protein 2| Length = 558 Score = 49.7 bits (117), Expect = 5e-06 Identities = 25/73 (34%), Positives = 41/73 (56%) Frame = +1 Query: 307 SVFVGNVDYACTPEEVQQHFNSCGTVNRVTILTDKFGQPKGFAYVEFVEAEAIQEAVKLS 486 +VFVG +D E+ F G+V V I+T++ G KG+ +V FV +Q+ V S Sbjct: 41 TVFVGGIDARMDETEIGSCFGRYGSVKEVKIITNRTGVSKGYGFVSFVNDVDVQKIVG-S 99 Query: 487 ESELHGRQIKVAP 525 + HG+++K+ P Sbjct: 100 QIHFHGKKLKLGP 112
>DAZ3_HUMAN (Q9NR90) Deleted in azoospermia protein 3| Length = 486 Score = 49.7 bits (117), Expect = 5e-06 Identities = 25/73 (34%), Positives = 41/73 (56%) Frame = +1 Query: 307 SVFVGNVDYACTPEEVQQHFNSCGTVNRVTILTDKFGQPKGFAYVEFVEAEAIQEAVKLS 486 +VFVG +D E+ F G+V V I+T++ G KG+ +V FV +Q+ V S Sbjct: 41 TVFVGGIDARMDETEIGSCFGRYGSVKEVKIITNRTGVSKGYGFVSFVNDVDVQKIVG-S 99 Query: 487 ESELHGRQIKVAP 525 + HG+++K+ P Sbjct: 100 QIHFHGKKLKLGP 112
>NOP12_YARLI (Q6C2Q7) Nucleolar protein 12| Length = 509 Score = 49.3 bits (116), Expect = 7e-06 Identities = 29/82 (35%), Positives = 49/82 (59%), Gaps = 9/82 (10%) Frame = +1 Query: 304 RSVFVGNVDYACTPEEVQQHFNSCGTVNRVTILTD-KFGQPKGFAYVEFVEAEAIQEAV- 477 R VFVG +D+ E + + F+SCG V V I+ D K KGFAYV+F + ++++A+ Sbjct: 274 RCVFVGALDFEEQEESLWEAFSSCGDVEYVRIVRDPKTNVGKGFAYVQFKDVNSVEQALL 333 Query: 478 -------KLSESELHGRQIKVA 522 +LS+S + R+++V+ Sbjct: 334 LNGKGINELSKSTTNKRKLRVS 355
>CSTF2_PONPY (Q5RDA3) Cleavage stimulation factor, 64 kDa subunit (CSTF 64 kDa| subunit) (CF-1 64 kDa subunit) (CstF-64) Length = 577 Score = 49.3 bits (116), Expect = 7e-06 Identities = 27/85 (31%), Positives = 47/85 (55%), Gaps = 2/85 (2%) Frame = +1 Query: 271 TTSEAKEEMDSRSVFVGNVDYACTPEEVQQHFNSCGTVNRVTILTDK-FGQPKGFAYVEF 447 T + + RSVFVGN+ Y T E+++ F+ G V ++ D+ G+PKG+ + E+ Sbjct: 5 TVRDPAVDRSLRSVFVGNIPYEATEEQLKDIFSEVGPVVSFRLVYDRETGKPKGYGFCEY 64 Query: 448 VEAEAIQEAVK-LSESELHGRQIKV 519 + E A++ L+ E GR ++V Sbjct: 65 QDQETALSAMRNLNGREFSGRALRV 89
>CSTF2_HUMAN (P33240) Cleavage stimulation factor, 64 kDa subunit (CSTF 64 kDa| subunit) (CF-1 64 kDa subunit) (CstF-64) Length = 577 Score = 49.3 bits (116), Expect = 7e-06 Identities = 27/85 (31%), Positives = 47/85 (55%), Gaps = 2/85 (2%) Frame = +1 Query: 271 TTSEAKEEMDSRSVFVGNVDYACTPEEVQQHFNSCGTVNRVTILTDK-FGQPKGFAYVEF 447 T + + RSVFVGN+ Y T E+++ F+ G V ++ D+ G+PKG+ + E+ Sbjct: 5 TVRDPAVDRSLRSVFVGNIPYEATEEQLKDIFSEVGPVVSFRLVYDRETGKPKGYGFCEY 64 Query: 448 VEAEAIQEAVK-LSESELHGRQIKV 519 + E A++ L+ E GR ++V Sbjct: 65 QDQETALSAMRNLNGREFSGRALRV 89
>CSTF2_BOVIN (Q8HXM1) Cleavage stimulation factor, 64 kDa subunit (CSTF 64 kDa| subunit) (CF-1 64 kDa subunit) (CstF-64) Length = 572 Score = 49.3 bits (116), Expect = 7e-06 Identities = 27/85 (31%), Positives = 47/85 (55%), Gaps = 2/85 (2%) Frame = +1 Query: 271 TTSEAKEEMDSRSVFVGNVDYACTPEEVQQHFNSCGTVNRVTILTDK-FGQPKGFAYVEF 447 T + + RSVFVGN+ Y T E+++ F+ G V ++ D+ G+PKG+ + E+ Sbjct: 5 TVRDPAVDRSLRSVFVGNIPYEATEEQLKDIFSEVGPVVSFRLVYDRETGKPKGYGFCEY 64 Query: 448 VEAEAIQEAVK-LSESELHGRQIKV 519 + E A++ L+ E GR ++V Sbjct: 65 QDQETALSAMRNLNGREFSGRALRV 89
>CSTF2_MOUSE (Q8BIQ5) Cleavage stimulation factor, 64 kDa subunit (CSTF 64 kDa| subunit) (CF-1 64 kDa subunit) (CstF-64) Length = 580 Score = 48.9 bits (115), Expect = 9e-06 Identities = 26/74 (35%), Positives = 44/74 (59%), Gaps = 2/74 (2%) Frame = +1 Query: 304 RSVFVGNVDYACTPEEVQQHFNSCGTVNRVTILTDK-FGQPKGFAYVEFVEAEAIQEAVK 480 RSVFVGN+ Y T E+++ F+ G V ++ D+ G+PKG+ + E+ + E A++ Sbjct: 16 RSVFVGNIPYEATEEQLKDIFSEVGPVVSFRLVYDRETGKPKGYGFCEYQDQETALSAMR 75 Query: 481 -LSESELHGRQIKV 519 L+ E GR ++V Sbjct: 76 NLNGREFSGRALRV 89
>MRD1_SCHPO (O13620) Multiple RNA-binding domain-containing protein 1| Length = 833 Score = 48.9 bits (115), Expect = 9e-06 Identities = 27/102 (26%), Positives = 56/102 (54%), Gaps = 4/102 (3%) Frame = +1 Query: 238 AKEMQGGDPNATTSEAKEEM--DSRSVFVGNVDYACTPEEVQQHFNSCGTVNRVTILTDK 411 A +Q + N + E ++ +++ +F+ N+ Y+C ++++ F G + +V + DK Sbjct: 299 ASMLQKAENNVSEQERNIQLISETKRLFLRNLTYSCAEDDLKSLFGPFGQLEQVHMPIDK 358 Query: 412 -FGQPKGFAYVEFVEA-EAIQEAVKLSESELHGRQIKVAPKR 531 PKGFAY++F +A +A++ ++L GR + V P + Sbjct: 359 KTNNPKGFAYIDFHDADDAVRAYLELDAKPFQGRLLHVLPAK 400 Score = 32.0 bits (71), Expect = 1.1 Identities = 18/69 (26%), Positives = 33/69 (47%), Gaps = 1/69 (1%) Frame = +1 Query: 310 VFVGNVDYACTPEEVQQHFNSCGTVNRVTILTDKFGQPKGFAYVEFVEAEAIQEAVK-LS 486 + + N+ + T ++VQ + G + V + +GFA+ EFV A A++ L Sbjct: 723 ILIKNLPFEATKKDVQSLLGAYGQLRSVRVPKKFDRSARGFAFAEFVTAREAANAMRALK 782 Query: 487 ESELHGRQI 513 + L GR + Sbjct: 783 NTHLLGRHL 791
>GBP2_YEAST (P25555) Single-strand telomeric DNA-binding protein GBP2| (G-strand-binding protein 2) (RAP1 localization factor 6) Length = 427 Score = 48.9 bits (115), Expect = 9e-06 Identities = 24/73 (32%), Positives = 42/73 (57%) Frame = +1 Query: 280 EAKEEMDSRSVFVGNVDYACTPEEVQQHFNSCGTVNRVTILTDKFGQPKGFAYVEFVEAE 459 +A + S+FV N+ + CTPE++++ F + G V I+T K G +G VEF + E Sbjct: 114 DATKRNFENSIFVRNLTFDCTPEDLKELFGTVGEVVEADIITSK-GHHRGMGTVEFTKNE 172 Query: 460 AIQEAVKLSESEL 498 ++Q+A+ + L Sbjct: 173 SVQDAISKFDGAL 185 Score = 36.2 bits (82), Expect = 0.058 Identities = 25/84 (29%), Positives = 42/84 (50%), Gaps = 2/84 (2%) Frame = +1 Query: 286 KEEMDSR-SVFVGNVDYACTPEEVQQHFNSCGTVNRVTILTDKFGQPKGFAYVEF-VEAE 459 +EE+D+ VF+ N+ Y+ + ++ F CG V R + D G +GF V + E E Sbjct: 212 REEIDNGFEVFIINLPYSMNWQSLKDMFKECGHVLRADVELDFNGFSRGFGSVIYPTEDE 271 Query: 460 AIQEAVKLSESELHGRQIKVAPKR 531 I+ + E+ GR ++V R Sbjct: 272 MIRAIDTFNGMEVEGRVLEVREGR 295
>RBM7_BOVIN (Q3MHY8) RNA-binding protein 7 (RNA-binding motif protein 7)| Length = 262 Score = 48.5 bits (114), Expect = 1e-05 Identities = 28/73 (38%), Positives = 43/73 (58%), Gaps = 1/73 (1%) Frame = +1 Query: 304 RSVFVGNVDYACTPEEVQQHFNSCGTVNRVTILTDKFGQPKGFAYVEFVEAEAIQEAVKL 483 R++FVGN++ T E + + F+ G V +V I DK G+PK FA+V F ++ A+ L Sbjct: 10 RTLFVGNLETKVTEELLFELFHQAGPVIKVKIPKDKDGKPKQFAFVNFKHEVSVPYAMNL 69 Query: 484 SES-ELHGRQIKV 519 +L GR IK+ Sbjct: 70 LNGIKLFGRPIKI 82
>NCBP2_YEAST (Q08920) Nuclear cap-binding protein subunit 2| Length = 208 Score = 48.5 bits (114), Expect = 1e-05 Identities = 26/89 (29%), Positives = 51/89 (57%), Gaps = 2/89 (2%) Frame = +1 Query: 259 DPNATTSEAKEEMDSRSVFVGNVDYACTPEEVQQHFNSCGTVNRVTILTDKFG-QPKGFA 435 +PN E +E M S +++VGN+ + + E++ + F+ CGT+ R+ + D+F P GF Sbjct: 32 NPNGL-QELRESMKSSTIYVGNLSFYTSEEQIYELFSKCGTIKRIIMGLDRFKFTPCGFC 90 Query: 436 YVEF-VEAEAIQEAVKLSESELHGRQIKV 519 ++ + EA+ LS+++L + I + Sbjct: 91 FIIYSCPDEALNALKYLSDTKLDEKTITI 119
>HRB1_YEAST (P38922) Protein HRB1 (Protein TOM34)| Length = 429 Score = 48.5 bits (114), Expect = 1e-05 Identities = 24/72 (33%), Positives = 40/72 (55%) Frame = +1 Query: 265 NATTSEAKEEMDSRSVFVGNVDYACTPEEVQQHFNSCGTVNRVTILTDKFGQPKGFAYVE 444 ++T E S S+FVGN+ Y TPE++ + F+ G V R I+T + G +G VE Sbjct: 123 DSTYEEKVNRNYSNSIFVGNLTYDSTPEDLTEFFSQIGKVVRADIITSR-GHHRGMGTVE 181 Query: 445 FVEAEAIQEAVK 480 F ++ + A++ Sbjct: 182 FTNSDDVDRAIR 193 Score = 31.2 bits (69), Expect = 1.9 Identities = 13/49 (26%), Positives = 24/49 (48%) Frame = +1 Query: 301 SRSVFVGNVDYACTPEEVQQHFNSCGTVNRVTILTDKFGQPKGFAYVEF 447 +R ++ N+ ++ ++ F + G VN + D G P G A VE+ Sbjct: 350 NRLIYCSNLPFSTAKSDLYDLFETIGKVNNAELRYDSKGAPTGIAVVEY 398
>ROA1_DROME (P07909) Heterogeneous nuclear ribonucleoprotein A1 (hnRNP core| protein A1-A) (PEN repeat clone P9) Length = 365 Score = 48.1 bits (113), Expect = 1e-05 Identities = 26/94 (27%), Positives = 46/94 (48%), Gaps = 1/94 (1%) Frame = +1 Query: 253 GGDPNATTSEAKEEMDSRSVFVGNVDYACTPEEVQQHFNSCGTVNRVTILTD-KFGQPKG 429 G D + E R +F+G +DY T E ++ HF G + V ++ D + + +G Sbjct: 14 GHDDDFPQDSITEPEHMRKLFIGGLDYRTTDENLKAHFEKWGNIVDVVVMKDPRTKRSRG 73 Query: 430 FAYVEFVEAEAIQEAVKLSESELHGRQIKVAPKR 531 F ++ + + I EA K ++ GR ++ PKR Sbjct: 74 FGFITYSHSSMIDEAQKSRPHKIDGRVVE--PKR 105 Score = 40.0 bits (92), Expect = 0.004 Identities = 19/73 (26%), Positives = 41/73 (56%), Gaps = 1/73 (1%) Frame = +1 Query: 304 RSVFVGNVDYACTPEEVQQHFNSCGTVNRVTILTDK-FGQPKGFAYVEFVEAEAIQEAVK 480 + +FVG + + ++ +F G + + I+ DK G+ +GFA+VEF + + + + V Sbjct: 122 KKLFVGALKDDHDEQSIRDYFQHFGNIVDINIVIDKETGKKRGFAFVEFDDYDPVDKVVL 181 Query: 481 LSESELHGRQIKV 519 + +L+G+ + V Sbjct: 182 QKQHQLNGKMVDV 194
>GAR2_SCHPO (P41891) Protein gar2| Length = 500 Score = 47.8 bits (112), Expect = 2e-05 Identities = 22/74 (29%), Positives = 44/74 (59%), Gaps = 1/74 (1%) Frame = +1 Query: 301 SRSVFVGNVDYACTPEEVQQHFNSCGTVNRVTILTD-KFGQPKGFAYVEFVEAEAIQEAV 477 S +VFVGN+ + T +++ F CG + + + TD + G+ KGF YV F + ++ ++ V Sbjct: 365 SDTVFVGNLSFNATEDDLSTAFGGCGDIQSIRLPTDPQSGRLKGFGYVTFSDIDSAKKCV 424 Query: 478 KLSESELHGRQIKV 519 +++ + GR ++ Sbjct: 425 EMNGHFIAGRPCRL 438 Score = 42.7 bits (99), Expect = 6e-04 Identities = 31/175 (17%), Positives = 67/175 (38%), Gaps = 2/175 (1%) Frame = +1 Query: 1 SAXXXXXXXXXXXXAQHAAAMEDEEHEVYGQEIPVDAEDVEMGAGGDDAAKLHELDXXXX 180 S+ +++ E EE E ++ E + +++ + Sbjct: 162 SSSDSSSESSSSESESESSSSESEEEEEVVEKTEEKKEGSSESSSDSESSSDSSSESGDS 221 Query: 181 XXXXXXXXXXXXXXXQAKVAKEMQGGDPNATTSEAKEEMDSRSVFVGNVDYACTPEEVQQ 360 + + A+ P T +++ ++ +VFVG + + + + Q Sbjct: 222 DSSSDSESESSSEDEKKRKAEPASEERPAKITKPSQDSNETCTVFVGRLSWNVDDQWLGQ 281 Query: 361 HFNSCGTVNRVTILTD-KFGQPKGFAYVEFVEAEAIQEAVKLS-ESELHGRQIKV 519 F GT+ ++ D + G+ KG+ YV+F EA + AV + E+ GR + + Sbjct: 282 EFEEYGTIVGARVIMDGQSGRSKGYGYVDFETPEAAKAAVAANGTKEIDGRMVNL 336
>CTF1_SCHPO (O43040) Cleavage and termination factor 1 (Transcription| termination factor ctf1) Length = 363 Score = 47.8 bits (112), Expect = 2e-05 Identities = 27/72 (37%), Positives = 43/72 (59%), Gaps = 2/72 (2%) Frame = +1 Query: 310 VFVGNVDYACTPEEVQQHFNSCGTVNRVTILTD-KFGQPKGFAYVEFVEAEAIQEAV-KL 483 VFVGN+ Y + +++ + FN G V ++ D + G KG+ + EF ++E AV KL Sbjct: 9 VFVGNIPYDVSEQQMTEIFNQVGPVKTFKLVLDPETGSGKGYGFCEFFDSETTAMAVRKL 68 Query: 484 SESELHGRQIKV 519 + SEL R+I+V Sbjct: 69 NNSELGPRKIRV 80
>ROC5_NICSY (P19684) 33 kDa ribonucleoprotein, chloroplast precursor| Length = 324 Score = 47.8 bits (112), Expect = 2e-05 Identities = 29/87 (33%), Positives = 51/87 (58%), Gaps = 7/87 (8%) Frame = +1 Query: 280 EAKEEMDSRSV-----FVGNVDYACTPEEVQQHFNSCGTVNRVTILTDKF-GQPKGFAYV 441 E +E ++S SV +VGN+ ++ T ++ + F GTV V I+ D+ + +GFA+V Sbjct: 101 EKEERVESESVEGGRLYVGNLPFSMTSSQLSEIFAEAGTVANVEIVYDRVTDRSRGFAFV 160 Query: 442 EFVEAEAIQEAVKLSE-SELHGRQIKV 519 E +EA++L + S++ GR +KV Sbjct: 161 TMGSVEEAKEAIRLFDGSQVGGRTVKV 187 Score = 36.2 bits (82), Expect = 0.058 Identities = 20/72 (27%), Positives = 41/72 (56%), Gaps = 2/72 (2%) Frame = +1 Query: 310 VFVGNVDYACTPEEVQQHF-NSCGTVNRVTILTDKFGQPKGFAYVEFVEAEAIQEAV-KL 483 ++V N+ +A T + ++ F + G ++ I G+ +GF ++ F AEA+ A+ + Sbjct: 219 LYVANLSWALTSQGLRDAFADQPGFMSAKVIYDRSSGRSRGFGFITFSSAEAMNSALDTM 278 Query: 484 SESELHGRQIKV 519 +E EL GR +++ Sbjct: 279 NEVELEGRPLRL 290
>ROA1_SCHAM (P21522) Heterogeneous nuclear ribonucleoprotein A1, A2/B1 homolog| Length = 342 Score = 47.4 bits (111), Expect = 3e-05 Identities = 23/77 (29%), Positives = 42/77 (54%), Gaps = 1/77 (1%) Frame = +1 Query: 304 RSVFVGNVDYACTPEEVQQHFNSCGTVNRVTILTD-KFGQPKGFAYVEFVEAEAIQEAVK 480 R +F+G +DY T E ++QHF G + V ++ D K + +GF ++ + A + +A Sbjct: 17 RKLFIGGLDYRTTDESLKQHFEQWGEIVDVVVMKDPKTKRSRGFGFITYSRAHMVDDAQN 76 Query: 481 LSESELHGRQIKVAPKR 531 ++ GR ++ PKR Sbjct: 77 ARPHKVDGRVVE--PKR 91 Score = 38.1 bits (87), Expect = 0.015 Identities = 20/73 (27%), Positives = 37/73 (50%), Gaps = 1/73 (1%) Frame = +1 Query: 304 RSVFVGNVDYACTPEEVQQHFNSCGTVNRVTILTDKFGQPK-GFAYVEFVEAEAIQEAVK 480 + +FVG + +++ +F GTV I+ DK + K GFA+VEF + + + + Sbjct: 108 KKLFVGGIKEEMEENDLRDYFKQYGTVVSAAIVVDKETRKKRGFAFVEFDDYDPVDKICL 167 Query: 481 LSESELHGRQIKV 519 ++ G+ I V Sbjct: 168 SRNHQIRGKHIDV 180
>NUCL_CHICK (P15771) Nucleolin (Protein C23)| Length = 694 Score = 47.4 bits (111), Expect = 3e-05 Identities = 25/77 (32%), Positives = 47/77 (61%), Gaps = 1/77 (1%) Frame = +1 Query: 292 EMDSRSVFVGNVDYACTPEEVQQHFNSCGTVNRVTILTDKFGQPKGFAYVEFVEAEAIQE 471 E +S+++ V N+ YA + E +Q+ F ++ + + G+PKG+A+VEF AE +E Sbjct: 457 ERESKTLIVNNLSYAASEETLQELFKKATSIK---MPQNNQGRPKGYAFVEFPTAEDAKE 513 Query: 472 AV-KLSESELHGRQIKV 519 A+ + +E+ GR I++ Sbjct: 514 ALNSCNNTEIEGRAIRL 530 Score = 37.7 bits (86), Expect = 0.020 Identities = 26/97 (26%), Positives = 46/97 (47%), Gaps = 1/97 (1%) Frame = +1 Query: 232 KVAKEMQGGD-PNATTSEAKEEMDSRSVFVGNVDYACTPEEVQQHFNSCGTVNRVTILTD 408 K KEM P A + + + S+FV N+ EE++ + + Sbjct: 256 KRKKEMANKSAPEAKKKKTETPASAFSLFVKNLTPTKDYEELRTAIKEFFGKKNLQVSEV 315 Query: 409 KFGQPKGFAYVEFVEAEAIQEAVKLSESELHGRQIKV 519 + G K F YV+F+ AE + +A++L+ +L G +IK+ Sbjct: 316 RIGSSKRFGYVDFLSAEDMDKALQLNGKKLMGLEIKL 352 Score = 30.0 bits (66), Expect = 4.1 Identities = 19/74 (25%), Positives = 40/74 (54%), Gaps = 3/74 (4%) Frame = +1 Query: 301 SRSVFVGNVDYACTPEEVQQHFNSCGTVNRVTILTDKFGQPKGFAYVEF---VEAEAIQE 471 S+++FV + T E +++ F G+++ + G KGF +V+F +A+A +E Sbjct: 552 SKTLFVRGLSEDTTEETLRESFE--GSISARIVTDRDTGSSKGFGFVDFSSPEDAKAAKE 609 Query: 472 AVKLSESELHGRQI 513 A + + E+ G ++ Sbjct: 610 A--MEDGEIDGNKV 621
>MRD1_CANGA (Q6FXP4) Multiple RNA-binding domain-containing protein 1| Length = 861 Score = 47.4 bits (111), Expect = 3e-05 Identities = 31/100 (31%), Positives = 55/100 (55%), Gaps = 2/100 (2%) Frame = +1 Query: 226 QAKVAKEMQGGDPNATTSEAKEEMDSRSVFVGNVDYACTPEEVQQHFNSCGTVNRVTILT 405 QA A+E+Q P+ + AK + R +F+ N+ Y+ T ++ ++ F+ G + V + Sbjct: 300 QATPAEELQEEIPDEEQAIAKIQKTGR-LFLRNILYSSTEDDFKKLFSPYGELKEVHVAV 358 Query: 406 D-KFGQPKGFAYVEFVE-AEAIQEAVKLSESELHGRQIKV 519 D + G KGFAYV F + EA+Q ++L + GR + + Sbjct: 359 DTRTGNSKGFAYVLFAKPEEAVQAYIELDKQIFQGRLLHI 398 Score = 39.7 bits (91), Expect = 0.005 Identities = 27/99 (27%), Positives = 51/99 (51%), Gaps = 1/99 (1%) Frame = +1 Query: 232 KVAKEMQGGDPNATTSEAKEEMDSRSVFVGNVDYACTPEEVQQHFNSCGTVNRVTILTDK 411 K+ ++ NA + E K+ + + + V N+ + T ++V + FNS G + V + Sbjct: 715 KIQLKLSHRQGNAGSQEKKKAKNGK-IIVKNLPFEATRKDVFELFNSFGQLKSVRVPKKF 773 Query: 412 FGQPKGFAYVEFVEAEAIQEAV-KLSESELHGRQIKVAP 525 +GFA+VEFV + + A+ +L L GR++ + P Sbjct: 774 DKSARGFAFVEFVLPKEAENAMDQLQGVHLLGRRLVMQP 812
>NUCL_PONPY (Q5RF26) Nucleolin| Length = 711 Score = 46.6 bits (109), Expect = 4e-05 Identities = 34/159 (21%), Positives = 71/159 (44%) Frame = +1 Query: 43 AQHAAAMEDEEHEVYGQEIPVDAEDVEMGAGGDDAAKLHELDXXXXXXXXXXXXXXXXXX 222 A++ A EDEE + ++ D +D DD E D Sbjct: 228 AKNVAEDEDEEEDDEDEDDDDDDDD-------DDEDDEDEDDEEEEEEEEEEPVKEAPGK 280 Query: 223 XQAKVAKEMQGGDPNATTSEAKEEMDSRSVFVGNVDYACTPEEVQQHFNSCGTVNRVTIL 402 + ++AK+ + E E + ++FVGN+++ + E++ + N + ++ Sbjct: 281 RKKEMAKQKAAPEAKKQKVEGTEPTTAFNLFVGNLNFNKSAPELKTGISDVFAKNDLAVV 340 Query: 403 TDKFGQPKGFAYVEFVEAEAIQEAVKLSESELHGRQIKV 519 + G + F YV+F AE +++A++L+ ++ G +IK+ Sbjct: 341 DVRIGMTRKFGYVDFESAEDLEKALELTGLKVFGNEIKL 379 Score = 39.7 bits (91), Expect = 0.005 Identities = 20/75 (26%), Positives = 44/75 (58%), Gaps = 1/75 (1%) Frame = +1 Query: 298 DSRSVFVGNVDYACTPEEVQQHFNSCGTVNRVTILTDKFGQPKGFAYVEFVEAEAIQEAV 477 +S+++ + N+ Y+ T E +Q+ F + + ++ G+ KG+A++EF E +EA+ Sbjct: 485 ESKTLVLSNLSYSATEETLQEVFEKATFIK---VPQNQNGKSKGYAFIEFASFEDAKEAL 541 Query: 478 -KLSESELHGRQIKV 519 ++ E+ GR I++ Sbjct: 542 NSCNKREIEGRAIRL 556 Score = 36.2 bits (82), Expect = 0.058 Identities = 31/96 (32%), Positives = 54/96 (56%), Gaps = 6/96 (6%) Frame = +1 Query: 244 EMQG--GDPNATTSEAKEEMDSRSVFVGNVDYACTPEEVQQHFNSCGTVNRVTILTDK-F 414 E+QG G PNA + +K ++FV + T E +++ F+ G+V R I+TD+ Sbjct: 557 ELQGPRGSPNARSQPSK------TLFVKGLSEDTTEETLKESFD--GSV-RARIVTDRET 607 Query: 415 GQPKGFAYVEF---VEAEAIQEAVKLSESELHGRQI 513 G KGF +V+F +A+A +EA + + E+ G ++ Sbjct: 608 GSSKGFGFVDFNSEEDAKAAKEA--MEDGEIDGNKV 641
>NCBP2_ASHGO (Q754W7) Nuclear cap-binding protein subunit 2| Length = 218 Score = 46.2 bits (108), Expect = 6e-05 Identities = 22/82 (26%), Positives = 50/82 (60%), Gaps = 2/82 (2%) Frame = +1 Query: 280 EAKEEMDSRSVFVGNVDYACTPEEVQQHFNSCGTVNRVTILTDKFG-QPKGFAYVEFVEA 456 E ++ M S +++VGN+ + + E++ + F+ CG++ ++ + D+F P GF ++ + Sbjct: 38 ELRKSMTSATIYVGNLSFYTSEEQLYELFSKCGSIEKIIMGLDRFKFTPCGFCFIIYQTP 97 Query: 457 EAIQEAVK-LSESELHGRQIKV 519 + A+K LS+++L R+I + Sbjct: 98 QEALAALKYLSKTKLDDREITI 119
>NUCL_HUMAN (P19338) Nucleolin (Protein C23)| Length = 709 Score = 45.8 bits (107), Expect = 7e-05 Identities = 35/159 (22%), Positives = 69/159 (43%) Frame = +1 Query: 43 AQHAAAMEDEEHEVYGQEIPVDAEDVEMGAGGDDAAKLHELDXXXXXXXXXXXXXXXXXX 222 A++ A EDEE D ED + DD E D Sbjct: 228 AKNVAEDEDEEE---------DDEDEDDDDDEDDEDDDDEDDEEEEEEEEEEPVKEAPGK 278 Query: 223 XQAKVAKEMQGGDPNATTSEAKEEMDSRSVFVGNVDYACTPEEVQQHFNSCGTVNRVTIL 402 + ++AK+ + E E + ++FVGN+++ + E++ + N + ++ Sbjct: 279 RKKEMAKQKAAPEAKKQKVEGTEPTTAFNLFVGNLNFNKSAPELKTGISDVFAKNDLAVV 338 Query: 403 TDKFGQPKGFAYVEFVEAEAIQEAVKLSESELHGRQIKV 519 + G + F YV+F AE +++A++L+ ++ G +IK+ Sbjct: 339 DVRIGMTRKFGYVDFESAEDLEKALELTGLKVFGNEIKL 377 Score = 39.7 bits (91), Expect = 0.005 Identities = 20/75 (26%), Positives = 44/75 (58%), Gaps = 1/75 (1%) Frame = +1 Query: 298 DSRSVFVGNVDYACTPEEVQQHFNSCGTVNRVTILTDKFGQPKGFAYVEFVEAEAIQEAV 477 +S+++ + N+ Y+ T E +Q+ F + + ++ G+ KG+A++EF E +EA+ Sbjct: 483 ESKTLVLSNLSYSATEETLQEVFEKATFIK---VPQNQNGKSKGYAFIEFASFEDAKEAL 539 Query: 478 -KLSESELHGRQIKV 519 ++ E+ GR I++ Sbjct: 540 NSCNKREIEGRAIRL 554 Score = 36.2 bits (82), Expect = 0.058 Identities = 31/96 (32%), Positives = 54/96 (56%), Gaps = 6/96 (6%) Frame = +1 Query: 244 EMQG--GDPNATTSEAKEEMDSRSVFVGNVDYACTPEEVQQHFNSCGTVNRVTILTDK-F 414 E+QG G PNA + +K ++FV + T E +++ F+ G+V R I+TD+ Sbjct: 555 ELQGPRGSPNARSQPSK------TLFVKGLSEDTTEETLKESFD--GSV-RARIVTDRET 605 Query: 415 GQPKGFAYVEF---VEAEAIQEAVKLSESELHGRQI 513 G KGF +V+F +A+A +EA + + E+ G ++ Sbjct: 606 GSSKGFGFVDFNSEEDAKAAKEA--MEDGEIDGNKV 639
>NUCL_MACFA (Q4R4J7) Nucleolin| Length = 710 Score = 45.8 bits (107), Expect = 7e-05 Identities = 32/159 (20%), Positives = 73/159 (45%) Frame = +1 Query: 43 AQHAAAMEDEEHEVYGQEIPVDAEDVEMGAGGDDAAKLHELDXXXXXXXXXXXXXXXXXX 222 A++ A EDEE + ++ D +D + +D + E + Sbjct: 229 AKNVAEDEDEEEDDEDEDDDDDEDDEDEDDDDEDEEEEEEEEEPVKEAPGKR-------- 280 Query: 223 XQAKVAKEMQGGDPNATTSEAKEEMDSRSVFVGNVDYACTPEEVQQHFNSCGTVNRVTIL 402 + ++AK+ + E E + ++FVGN+++ + E++ + N + ++ Sbjct: 281 -KKEMAKQKAAPEAKKQKVEGTEPTTAFNLFVGNLNFNKSAPELKTGISDVFAKNDLAVV 339 Query: 403 TDKFGQPKGFAYVEFVEAEAIQEAVKLSESELHGRQIKV 519 + G + F YV+F AE +++A++L+ ++ G +IK+ Sbjct: 340 DVRIGMTRKFGYVDFESAEDLEKALELTGLKVFGNEIKL 378 Score = 39.7 bits (91), Expect = 0.005 Identities = 20/75 (26%), Positives = 44/75 (58%), Gaps = 1/75 (1%) Frame = +1 Query: 298 DSRSVFVGNVDYACTPEEVQQHFNSCGTVNRVTILTDKFGQPKGFAYVEFVEAEAIQEAV 477 +S+++ + N+ Y+ T E +Q+ F + + ++ G+ KG+A++EF E +EA+ Sbjct: 484 ESKTLVLSNLSYSATEETLQEVFEKATFIK---VPQNQNGKSKGYAFIEFASFEDAKEAL 540 Query: 478 -KLSESELHGRQIKV 519 ++ E+ GR I++ Sbjct: 541 NSCNKREIEGRAIRL 555 Score = 36.2 bits (82), Expect = 0.058 Identities = 31/96 (32%), Positives = 54/96 (56%), Gaps = 6/96 (6%) Frame = +1 Query: 244 EMQG--GDPNATTSEAKEEMDSRSVFVGNVDYACTPEEVQQHFNSCGTVNRVTILTDK-F 414 E+QG G PNA + +K ++FV + T E +++ F+ G+V R I+TD+ Sbjct: 556 ELQGPRGSPNARSQPSK------TLFVKGLSEDTTEETLKESFD--GSV-RARIVTDRET 606 Query: 415 GQPKGFAYVEF---VEAEAIQEAVKLSESELHGRQI 513 G KGF +V+F +A+A +EA + + E+ G ++ Sbjct: 607 GSSKGFGFVDFNSEEDAKAAKEA--MEDGEIDGNKV 640
>RNPC2_HUMAN (Q14498) RNA-binding region-containing protein 2 (Hepatocellular| carcinoma protein 1) (Splicing factor HCC1) Length = 530 Score = 45.1 bits (105), Expect = 1e-04 Identities = 25/78 (32%), Positives = 45/78 (57%), Gaps = 1/78 (1%) Frame = +1 Query: 289 EEMDSRSVFVGNVDYACTPEEVQQHFNSCGTVNRVTILTDKFGQ-PKGFAYVEFVEAEAI 465 EE D+R+VF + P ++++ F++ G V V +++D+ + KG AYVEFV+ ++ Sbjct: 148 EERDARTVFCMQLAARIRPRDLEEFFSTVGKVRDVRMISDRNSRRSKGIAYVEFVDVSSV 207 Query: 466 QEAVKLSESELHGRQIKV 519 A+ L+ + G I V Sbjct: 208 PLAIGLTGQRVLGVPIIV 225
>PABP2_ARATH (P42731) Polyadenylate-binding protein 2 (Poly(A)-binding protein| 2) (PABP 2) Length = 629 Score = 45.1 bits (105), Expect = 1e-04 Identities = 25/82 (30%), Positives = 45/82 (54%) Frame = +1 Query: 280 EAKEEMDSRSVFVGNVDYACTPEEVQQHFNSCGTVNRVTILTDKFGQPKGFAYVEFVEAE 459 EA ++ S +++V N+D + + E++++ F+ GTV ++ D G KG +V F E Sbjct: 310 EAADKFQSSNLYVKNLDPSISDEKLKEIFSPFGTVTSSKVMRDPNGTSKGSGFVAFATPE 369 Query: 460 AIQEAVKLSESELHGRQIKVAP 525 EA+ S+L G+ I+ P Sbjct: 370 EATEAM----SQLSGKMIESKP 387 Score = 44.7 bits (104), Expect = 2e-04 Identities = 21/74 (28%), Positives = 42/74 (56%), Gaps = 1/74 (1%) Frame = +1 Query: 307 SVFVGNVDYACTPEEVQQHFNSCGTVNRVTILTDKFGQPKGFAYVEFVEAEAIQEAV-KL 483 ++F+ N+D + + + F+S G + + D GQ KG+ +V++ E+ Q+A+ KL Sbjct: 125 NIFIKNLDESIDHKALHDTFSSFGNIVSCKVAVDSSGQSKGYGFVQYANEESAQKAIEKL 184 Query: 484 SESELHGRQIKVAP 525 + L+ +Q+ V P Sbjct: 185 NGMLLNDKQVYVGP 198 Score = 38.1 bits (87), Expect = 0.015 Identities = 26/105 (24%), Positives = 49/105 (46%), Gaps = 13/105 (12%) Frame = +1 Query: 244 EMQGGDPNATTSEAKE-----------EMDSRSVFVGNVDYACTPEEVQQHFNSCGTVNR 390 ++QG PN +T+ + + S++VG++D+ T ++ F GTV Sbjct: 5 QLQGQTPNGSTAAVTSAPATSGGATATQFGNTSLYVGDLDFNVTDSQLFDAFGQMGTVVT 64 Query: 391 VTILTDKFGQPK-GFAYVEFVEAEAIQEAV-KLSESELHGRQIKV 519 V + D + G+ YV F + A+ +L+ L+G+ I+V Sbjct: 65 VRVCRDLVTRRSLGYGYVNFTNPQDAARAIQELNYIPLYGKPIRV 109
>YNR5_YEAST (P53883) Hypothetical 45.7 kDa protein in RPS3-PSD1 intergenic| region Length = 403 Score = 44.7 bits (104), Expect = 2e-04 Identities = 23/75 (30%), Positives = 45/75 (60%), Gaps = 2/75 (2%) Frame = +1 Query: 301 SRSVFVGNVDYACTPEEVQQHFNSCGTVNRVTILT-DKFGQPKGFAYVEFVEAEAIQEAV 477 SR +FVGN+ + T + +++HF CG + ++ + T + G+ KGFA+++F E + Sbjct: 238 SRILFVGNLSFDVTDDLLRKHFQHCGDIVKIRMATFEDSGKCKGFAFIDFKNEEGSTNEL 297 Query: 478 K-LSESELHGRQIKV 519 K S ++ GR +++ Sbjct: 298 KDKSCRKIAGRPLRM 312 Score = 34.7 bits (78), Expect = 0.17 Identities = 23/107 (21%), Positives = 46/107 (42%), Gaps = 18/107 (16%) Frame = +1 Query: 253 GGDPNATTSEAKEEMDSRSVFVGNVDYACTPEEVQQHFNSCGTVN--------------- 387 G + + K++ + V++GN+ + T +++ + F + N Sbjct: 108 GDESGEVVKKKKKDENKYGVWIGNLSFDTTKDDLVRFFIAKTKDNEDEKSRVTEQDITRL 167 Query: 388 ---RVTILTDKFGQPKGFAYVEFVEAEAIQEAVKLSESELHGRQIKV 519 RV + KGF Y+ F E ++ ++LSES L+GR + + Sbjct: 168 SMPRVAAKNSNAMKNKGFCYMFFKNVEQMKAVLELSESHLNGRNMLI 214
>RNPC2_MOUSE (Q8VH51) RNA-binding region-containing protein 2 (Coactivator of| activating protein 1 and estrogen receptors) (Coactivator of AP-1 and ERs) (Transcription coactivator CAPER) Length = 530 Score = 44.7 bits (104), Expect = 2e-04 Identities = 24/78 (30%), Positives = 46/78 (58%), Gaps = 1/78 (1%) Frame = +1 Query: 289 EEMDSRSVFVGNVDYACTPEEVQQHFNSCGTVNRVTILTDKFGQ-PKGFAYVEFVEAEAI 465 EE D+R+VF + P ++++ F++ G V V +++D+ + +G AYVEFV+ ++ Sbjct: 148 EERDARTVFCMQLAARIRPRDLEEFFSTVGKVRDVRMISDRNSRRSRGIAYVEFVDVSSV 207 Query: 466 QEAVKLSESELHGRQIKV 519 + A+ L+ + G I V Sbjct: 208 RLAIGLTGQRVLGVPIIV 225
>RBM3_MOUSE (O89086) Putative RNA-binding protein 3 (RNA-binding motif protein| 3) Length = 153 Score = 44.7 bits (104), Expect = 2e-04 Identities = 22/72 (30%), Positives = 42/72 (58%), Gaps = 2/72 (2%) Frame = +1 Query: 310 VFVGNVDYACTPEEVQQHFNSCGTVNRVTILTDKFGQ-PKGFAYVEFVEAEAIQEAVKLS 486 +FVG +++ + ++ HF+S G ++ V ++ D+ Q +GF ++ F E +A++ Sbjct: 8 LFVGGLNFNTDEQALEDHFSSFGPISEVVVVKDRETQRSRGFGFITFTNPEHASDAMRAM 67 Query: 487 ESE-LHGRQIKV 519 E L GRQI+V Sbjct: 68 NGESLDGRQIRV 79
>RBM7_MOUSE (Q9CQT2) RNA-binding protein 7 (RNA-binding motif protein 7)| Length = 265 Score = 44.7 bits (104), Expect = 2e-04 Identities = 27/73 (36%), Positives = 42/73 (57%), Gaps = 1/73 (1%) Frame = +1 Query: 304 RSVFVGNVDYACTPEEVQQHFNSCGTVNRVTILTDKFGQPKGFAYVEFVEAEAIQEAVKL 483 R++FVGN++ T E + + F+ G V +V I DK G+ K FA+V F ++ A+ L Sbjct: 10 RTLFVGNLETKVTEELLFELFHQAGPVIKVKIPKDKDGKLKQFAFVNFKHEVSVPYAMNL 69 Query: 484 SES-ELHGRQIKV 519 +L GR IK+ Sbjct: 70 LNGIKLFGRPIKI 82
>PABP_SCHPO (P31209) Polyadenylate-binding protein (Poly(A)-binding protein)| (PABP) Length = 653 Score = 44.3 bits (103), Expect = 2e-04 Identities = 20/72 (27%), Positives = 42/72 (58%), Gaps = 1/72 (1%) Frame = +1 Query: 307 SVFVGNVDYACTPEEVQQHFNSCGTVNRVTILTDKFGQPKGFAYVEFVEAEAIQEAV-KL 483 +V++ N+D T +E F G + ++++ D+ +P+GF +V + E Q+AV +L Sbjct: 262 NVYIKNLDTEITEQEFSDLFGQFGEITSLSLVKDQNDKPRGFGFVNYANHECAQKAVDEL 321 Query: 484 SESELHGRQIKV 519 ++ E G+++ V Sbjct: 322 NDKEYKGKKLYV 333 Score = 41.2 bits (95), Expect = 0.002 Identities = 21/73 (28%), Positives = 42/73 (57%), Gaps = 1/73 (1%) Frame = +1 Query: 307 SVFVGNVDYACTPEEVQQHFNSCGTVNRVTILTDKFGQPKGFAYVEFVEAEAIQEAV-KL 483 ++F+ N+ E ++ F++ GT+ I+TD+ G+ KGF +V + E +AV ++ Sbjct: 365 NLFIKNLQDEVDDERLKAEFSAFGTITSAKIMTDEQGKSKGFGFVCYTTPEEANKAVTEM 424 Query: 484 SESELHGRQIKVA 522 ++ L G+ + VA Sbjct: 425 NQRMLAGKPLYVA 437 Score = 36.6 bits (83), Expect = 0.044 Identities = 16/63 (25%), Positives = 33/63 (52%) Frame = +1 Query: 292 EMDSRSVFVGNVDYACTPEEVQQHFNSCGTVNRVTILTDKFGQPKGFAYVEFVEAEAIQE 471 +M + +VF+ N+D A + + F++ G + + D+ G KG+ +V F E+ Sbjct: 164 KMGTGNVFIKNLDPAIDNKALHDTFSAFGKILSCKVAVDELGNAKGYGFVHFDSVESANA 223 Query: 472 AVK 480 A++ Sbjct: 224 AIE 226 Score = 33.1 bits (74), Expect = 0.49 Identities = 22/75 (29%), Positives = 41/75 (54%), Gaps = 2/75 (2%) Frame = +1 Query: 301 SRSVFVGNVDYACTPEEVQQHFNSCGTVNRVTILTDKFGQPK-GFAYVEFVEAEAIQEAV 477 S S++VG +D + T + + FNS G V + + D + G+AYV F E ++A+ Sbjct: 79 SASLYVGELDPSVTEAMLFELFNSIGPVASIRVCRDAVTRRSLGYAYVNFHNMEDGEKAL 138 Query: 478 -KLSESELHGRQIKV 519 +L+ + + GR ++ Sbjct: 139 DELNYTLIKGRPCRI 153
>PUB1_YEAST (P32588) Nuclear and cytoplasmic polyadenylated RNA-binding protein| PUB1 (ARS consensus-binding protein ACBP-60) (Poly(U)-binding protein) (Poly uridylate-binding protein) Length = 452 Score = 44.3 bits (103), Expect = 2e-04 Identities = 38/157 (24%), Positives = 72/157 (45%), Gaps = 7/157 (4%) Frame = +1 Query: 67 DEEHEVYGQEIPVDAED---VEMGAGGDDAAKLHELDXXXXXXXXXXXXXXXXXXXQAKV 237 +E+H+ Q+ PV E VE A D +++ ++ Sbjct: 5 EEQHQQQQQQQPVAVETPSAVEAPASADPSSE-----------------QSVAVEGNSEQ 47 Query: 238 AKEMQG-GDPNATTSEA---KEEMDSRSVFVGNVDYACTPEEVQQHFNSCGTVNRVTILT 405 A++ QG DP+ + A E R ++VGN+D A T + ++Q+F G + + I+ Sbjct: 48 AEDNQGENDPSVVPANAITGGRETSDRVLYVGNLDKAITEDILKQYFQVGGPIANIKIMI 107 Query: 406 DKFGQPKGFAYVEFVEAEAIQEAVKLSESELHGRQIK 516 DK + +A+VE+ ++ A++ L+G+QI+ Sbjct: 108 DKNNKNVNYAFVEYHQSHDANIALQ----TLNGKQIE 140
>PABP1_RAT (Q9EPH8) Polyadenylate-binding protein 1 (Poly(A)-binding protein| 1) (PABP 1) Length = 636 Score = 43.9 bits (102), Expect = 3e-04 Identities = 24/72 (33%), Positives = 41/72 (56%), Gaps = 1/72 (1%) Frame = +1 Query: 307 SVFVGNVDYACTPEEVQQHFNSCGTVNRVTILTDKFGQPKGFAYVEFVEAEAIQEAV-KL 483 +V++ N E +++ F G V ++TD+ G+ KGF +V F E Q+AV ++ Sbjct: 192 NVYIKNFGEDMDDERLKELFGKFGPALSVKVMTDESGKSKGFGFVSFERHEDAQKAVDEM 251 Query: 484 SESELHGRQIKV 519 + EL+G+QI V Sbjct: 252 NGKELNGKQIYV 263 Score = 35.4 bits (80), Expect = 0.098 Identities = 20/73 (27%), Positives = 39/73 (53%) Frame = +1 Query: 307 SVFVGNVDYACTPEEVQQHFNSCGTVNRVTILTDKFGQPKGFAYVEFVEAEAIQEAVKLS 486 +++V N+D E +++ F+ GT+ ++ + G+ KGF +V F E +AV Sbjct: 295 NLYVKNLDDGIDDERLRKEFSPFGTITSAKVMMEG-GRSKGFGFVCFSSPEEATKAV--- 350 Query: 487 ESELHGRQIKVAP 525 +E++GR + P Sbjct: 351 -TEMNGRIVATKP 362
>PABP1_MOUSE (P29341) Polyadenylate-binding protein 1 (Poly(A)-binding protein| 1) (PABP 1) Length = 636 Score = 43.9 bits (102), Expect = 3e-04 Identities = 24/72 (33%), Positives = 41/72 (56%), Gaps = 1/72 (1%) Frame = +1 Query: 307 SVFVGNVDYACTPEEVQQHFNSCGTVNRVTILTDKFGQPKGFAYVEFVEAEAIQEAV-KL 483 +V++ N E +++ F G V ++TD+ G+ KGF +V F E Q+AV ++ Sbjct: 192 NVYIKNFGEDMDDERLKELFGKFGPALSVKVMTDESGKSKGFGFVSFERHEDAQKAVDEM 251 Query: 484 SESELHGRQIKV 519 + EL+G+QI V Sbjct: 252 NGKELNGKQIYV 263 Score = 35.4 bits (80), Expect = 0.098 Identities = 20/73 (27%), Positives = 39/73 (53%) Frame = +1 Query: 307 SVFVGNVDYACTPEEVQQHFNSCGTVNRVTILTDKFGQPKGFAYVEFVEAEAIQEAVKLS 486 +++V N+D E +++ F+ GT+ ++ + G+ KGF +V F E +AV Sbjct: 295 NLYVKNLDDGIDDERLRKEFSPFGTITSAKVMMEG-GRSKGFGFVCFSSPEEATKAV--- 350 Query: 487 ESELHGRQIKVAP 525 +E++GR + P Sbjct: 351 -TEMNGRIVATKP 362
>RB87F_DROME (P48810) Heterogeneous nuclear ribonucleoprotein 87F (HRP36.1| protein) (Protein P11) Length = 385 Score = 43.9 bits (102), Expect = 3e-04 Identities = 23/85 (27%), Positives = 43/85 (50%), Gaps = 1/85 (1%) Frame = +1 Query: 280 EAKEEMDSRSVFVGNVDYACTPEEVQQHFNSCGTVNRVTILTD-KFGQPKGFAYVEFVEA 456 E E R +F+G +DY T + ++ HF G + V ++ D K + +GF ++ + ++ Sbjct: 16 EITEPEQLRKLFIGGLDYRTTDDGLKAHFEKWGNIVDVVVMKDPKTKRSRGFGFITYSQS 75 Query: 457 EAIQEAVKLSESELHGRQIKVAPKR 531 I A ++ GR ++ PKR Sbjct: 76 YMIDNAQNARPHKIDGRTVE--PKR 98 Score = 34.7 bits (78), Expect = 0.17 Identities = 20/86 (23%), Positives = 45/86 (52%), Gaps = 8/86 (9%) Frame = +1 Query: 286 KEEMDS-------RSVFVGNVDYACTPEEVQQHFNSCGTVNRVTILTDK-FGQPKGFAYV 441 ++E+DS + +FVG + E ++++F G + V I++DK G+ +GFA++ Sbjct: 102 RQEIDSPNAGATVKKLFVGGLRDDHDEECLREYFKDFGQIVSVNIVSDKDTGKKRGFAFI 161 Query: 442 EFVEAEAIQEAVKLSESELHGRQIKV 519 EF + + + + + + + + V Sbjct: 162 EFDDYDPVDKIILQKTHSIKNKTLDV 187
>BOLL_MACFA (Q8WP23) Protein boule-like| Length = 283 Score = 43.9 bits (102), Expect = 3e-04 Identities = 24/91 (26%), Positives = 47/91 (51%), Gaps = 4/91 (4%) Frame = +1 Query: 265 NATTSEAKEEMDSRSVFVGNVDYACTPEEVQQHFNSCGTVNRVTILTDKFGQPKGFAYVE 444 N T++ + +FVG +D+ ++++ F+ G+V V I+ D+ G KG+ +V Sbjct: 20 NPTSAPRYGTVIPNRIFVGGIDFKTNESDLRKFFSQYGSVKEVKIVNDRAGVSKGYGFVT 79 Query: 445 FVEAE----AIQEAVKLSESELHGRQIKVAP 525 F E +QEA KL+ + +++ + P Sbjct: 80 FETQEDAQKILQEAEKLNYKD---KKLNIGP 107
>BOLL_HUMAN (Q8N9W6) Protein boule-like| Length = 283 Score = 43.9 bits (102), Expect = 3e-04 Identities = 24/91 (26%), Positives = 47/91 (51%), Gaps = 4/91 (4%) Frame = +1 Query: 265 NATTSEAKEEMDSRSVFVGNVDYACTPEEVQQHFNSCGTVNRVTILTDKFGQPKGFAYVE 444 N T++ + +FVG +D+ ++++ F+ G+V V I+ D+ G KG+ +V Sbjct: 20 NPTSAPRYGTVIPNRIFVGGIDFKTNESDLRKFFSQYGSVKEVKIVNDRAGVSKGYGFVT 79 Query: 445 FVEAE----AIQEAVKLSESELHGRQIKVAP 525 F E +QEA KL+ + +++ + P Sbjct: 80 FETQEDAQKILQEAEKLNYKD---KKLNIGP 107
>RNP4F_DROME (Q9W4D2) RNA-binding protein 4F| Length = 941 Score = 43.9 bits (102), Expect = 3e-04 Identities = 27/78 (34%), Positives = 39/78 (50%), Gaps = 4/78 (5%) Frame = +1 Query: 256 GDPNATTSEAK----EEMDSRSVFVGNVDYACTPEEVQQHFNSCGTVNRVTILTDKFGQP 423 G NA E+ M+ +FV N+ AC+ EE+ + F+ GT+ V ++ Q Sbjct: 704 GPANAEAKESNFKYSPNMEINKIFVRNLHPACSKEELHELFSPFGTIKDVRLVHKLNKQF 763 Query: 424 KGFAYVEFVEAEAIQEAV 477 KG AYVEF + Q AV Sbjct: 764 KGIAYVEFEKPGEAQRAV 781
>MRD1_KLULA (Q6CQR6) Multiple RNA-binding domain-containing protein 1| Length = 878 Score = 43.9 bits (102), Expect = 3e-04 Identities = 29/93 (31%), Positives = 48/93 (51%), Gaps = 8/93 (8%) Frame = +1 Query: 271 TTSEAKEEMDSRSV------FVGNVDYACTPEEVQQHFNSCGTVNRVTILTD-KFGQPKG 429 T+ E++EE + + F+ N+ Y T ++ ++ F+ G + V I D + GQ KG Sbjct: 313 TSQESEEEKSLKKIRETGRLFLRNILYTATEDDFRKLFSPYGELEEVHIAVDTRTGQSKG 372 Query: 430 FAYVEFVEAE-AIQEAVKLSESELHGRQIKVAP 525 FAYV F A+ A V+L + GR + + P Sbjct: 373 FAYVLFKNADNAATAFVELDKQIFQGRLLHILP 405 Score = 35.4 bits (80), Expect = 0.098 Identities = 22/87 (25%), Positives = 43/87 (49%), Gaps = 1/87 (1%) Frame = +1 Query: 256 GDPNATTSEAKEEMDSRSVFVGNVDYACTPEEVQQHFNSCGTVNRVTILTDKFGQPKGFA 435 G S K++ + + V N+ + T ++V + F+S G + V + +GFA Sbjct: 736 GTSTTNASSKKKKKNQGKIIVKNLPFEATRKDVFELFSSFGQLKSVRVPKKFDKSARGFA 795 Query: 436 YVEFVEAEAIQEAV-KLSESELHGRQI 513 +VEF+ + + A+ +L L GR++ Sbjct: 796 FVEFLLPKEAENAMDQLQGVHLLGRRL 822
>ROA1_HUMAN (P09651) Heterogeneous nuclear ribonucleoprotein A1| (Helix-destabilizing protein) (Single-strand RNA-binding protein) (hnRNP core protein A1) Length = 371 Score = 43.5 bits (101), Expect = 4e-04 Identities = 22/83 (26%), Positives = 41/83 (49%), Gaps = 1/83 (1%) Frame = +1 Query: 286 KEEMDSRSVFVGNVDYACTPEEVQQHFNSCGTVNRVTILTD-KFGQPKGFAYVEFVEAEA 462 KE R +F+G + + T E ++ HF GT+ ++ D + +GF +V + E Sbjct: 7 KEPEQLRKLFIGGLSFETTDESLRSHFEQWGTLTDCVVMRDPNTKRSRGFGFVTYATVEE 66 Query: 463 IQEAVKLSESELHGRQIKVAPKR 531 + A+ ++ GR ++ PKR Sbjct: 67 VDAAMNARPHKVDGRVVE--PKR 87 Score = 36.2 bits (82), Expect = 0.058 Identities = 17/73 (23%), Positives = 38/73 (52%), Gaps = 1/73 (1%) Frame = +1 Query: 304 RSVFVGNVDYACTPEEVQQHFNSCGTVNRVTILTDK-FGQPKGFAYVEFVEAEAIQEAVK 480 + +FVG + ++ +F G + + I+TD+ G+ +GFA+V F + +++ + V Sbjct: 104 KKIFVGGIKEDTEEHHLRDYFEQYGKIEVIEIMTDRGSGKKRGFAFVTFDDHDSVDKIVI 163 Query: 481 LSESELHGRQIKV 519 ++G +V Sbjct: 164 QKYHTVNGHNCEV 176
>ROA1_RAT (P04256) Heterogeneous nuclear ribonucleoprotein A1| (Helix-destabilizing protein) (Single-strand RNA-binding protein) (hnRNP core protein A1) (HDP) Length = 319 Score = 43.5 bits (101), Expect = 4e-04 Identities = 22/83 (26%), Positives = 41/83 (49%), Gaps = 1/83 (1%) Frame = +1 Query: 286 KEEMDSRSVFVGNVDYACTPEEVQQHFNSCGTVNRVTILTD-KFGQPKGFAYVEFVEAEA 462 KE R +F+G + + T E ++ HF GT+ ++ D + +GF +V + E Sbjct: 7 KEPEQLRKLFIGGLSFETTDESLRSHFEQWGTLTDCVVMRDPNTKRSRGFGFVTYATVEE 66 Query: 463 IQEAVKLSESELHGRQIKVAPKR 531 + A+ ++ GR ++ PKR Sbjct: 67 VDAAMNARPHKVDGRVVE--PKR 87 Score = 36.2 bits (82), Expect = 0.058 Identities = 17/73 (23%), Positives = 38/73 (52%), Gaps = 1/73 (1%) Frame = +1 Query: 304 RSVFVGNVDYACTPEEVQQHFNSCGTVNRVTILTDK-FGQPKGFAYVEFVEAEAIQEAVK 480 + +FVG + ++ +F G + + I+TD+ G+ +GFA+V F + +++ + V Sbjct: 104 KKIFVGGIKEDTEEHHLRDYFEQYGKIEVIEIMTDRGSGKKRGFAFVTFDDHDSVDKIVI 163 Query: 481 LSESELHGRQIKV 519 ++G +V Sbjct: 164 QKYHTVNGHNCEV 176
>ROA1_MOUSE (P49312) Heterogeneous nuclear ribonucleoprotein A1| (Helix-destabilizing protein) (Single-strand binding protein) (hnRNP core protein A1) (HDP-1) (Topoisomerase-inhibitor suppressed) Length = 319 Score = 43.5 bits (101), Expect = 4e-04 Identities = 22/83 (26%), Positives = 41/83 (49%), Gaps = 1/83 (1%) Frame = +1 Query: 286 KEEMDSRSVFVGNVDYACTPEEVQQHFNSCGTVNRVTILTD-KFGQPKGFAYVEFVEAEA 462 KE R +F+G + + T E ++ HF GT+ ++ D + +GF +V + E Sbjct: 7 KEPEQLRKLFIGGLSFETTDESLRSHFEQWGTLTDCVVMRDPNTKRSRGFGFVTYATVEE 66 Query: 463 IQEAVKLSESELHGRQIKVAPKR 531 + A+ ++ GR ++ PKR Sbjct: 67 VDAAMNARPHKVDGRVVE--PKR 87 Score = 36.2 bits (82), Expect = 0.058 Identities = 17/73 (23%), Positives = 38/73 (52%), Gaps = 1/73 (1%) Frame = +1 Query: 304 RSVFVGNVDYACTPEEVQQHFNSCGTVNRVTILTDK-FGQPKGFAYVEFVEAEAIQEAVK 480 + +FVG + ++ +F G + + I+TD+ G+ +GFA+V F + +++ + V Sbjct: 104 KKIFVGGIKEDTEEHHLRDYFEQYGKIEVIEIMTDRGSGKKRGFAFVTFDDHDSVDKIVI 163 Query: 481 LSESELHGRQIKV 519 ++G +V Sbjct: 164 QKYHTVNGHNCEV 176
>ROA1_MACMU (Q28521) Heterogeneous nuclear ribonucleoprotein A1| (Helix-destabilizing protein) (Single-strand binding protein) (hnRNP core protein A1) Length = 319 Score = 43.5 bits (101), Expect = 4e-04 Identities = 22/83 (26%), Positives = 41/83 (49%), Gaps = 1/83 (1%) Frame = +1 Query: 286 KEEMDSRSVFVGNVDYACTPEEVQQHFNSCGTVNRVTILTD-KFGQPKGFAYVEFVEAEA 462 KE R +F+G + + T E ++ HF GT+ ++ D + +GF +V + E Sbjct: 7 KEPEQLRKLFIGGLSFETTDESLRSHFEQWGTLTDCVVMRDPNTKRSRGFGFVTYATVEK 66 Query: 463 IQEAVKLSESELHGRQIKVAPKR 531 + A+ ++ GR ++ PKR Sbjct: 67 VDAAMNARPHKVDGRVVE--PKR 87 Score = 35.4 bits (80), Expect = 0.098 Identities = 17/73 (23%), Positives = 37/73 (50%), Gaps = 1/73 (1%) Frame = +1 Query: 304 RSVFVGNVDYACTPEEVQQHFNSCGTVNRVTILTDK-FGQPKGFAYVEFVEAEAIQEAVK 480 + +FVG + ++ +F G + + I+TD+ G+ +GFA+V F + ++ + V Sbjct: 104 KKIFVGGIKEDTEEHHLRDYFEQYGKIEVIEIMTDRGSGKKRGFAFVTFDDHNSVDKIVI 163 Query: 481 LSESELHGRQIKV 519 ++G +V Sbjct: 164 QKYHTVNGHNCEV 176
>ROA1_XENLA (P17130) Heterogeneous nuclear ribonucleoproteins A1 homolog (hnRNP| A1) (Helix-destabilizing protein) (Single-strand binding protein) (hnRNP core protein A1) Length = 365 Score = 43.5 bits (101), Expect = 4e-04 Identities = 23/87 (26%), Positives = 46/87 (52%), Gaps = 2/87 (2%) Frame = +1 Query: 277 SEAKEEMDS-RSVFVGNVDYACTPEEVQQHFNSCGTVNRVTILTD-KFGQPKGFAYVEFV 450 SEA E + R +F+G + + T E +++HF GT+ ++ D + +GF +V ++ Sbjct: 4 SEAPNEPEQLRKLFIGGLSFETTDESLREHFEQWGTLTDCVVMRDPNSKRSRGFGFVTYL 63 Query: 451 EAEAIQEAVKLSESELHGRQIKVAPKR 531 + + A+ ++ GR ++ PKR Sbjct: 64 STDEVDAAMTARPHKVDGRVVE--PKR 88 Score = 38.1 bits (87), Expect = 0.015 Identities = 19/76 (25%), Positives = 41/76 (53%), Gaps = 3/76 (3%) Frame = +1 Query: 304 RSVFVGNVDYACTPEEVQQHFNSCGTVNRVTILTDK-FGQPKGFAYVEFVEAEAIQEAV- 477 + +FVG + + ++++F G + + I+TD+ G+ +GFA+V F + +++ + V Sbjct: 105 KKIFVGGIKEDTEEDHLREYFEQYGKIEVIEIMTDRGSGKKRGFAFVTFEDHDSVDKIVI 164 Query: 478 -KLSESELHGRQIKVA 522 K H Q++ A Sbjct: 165 QKYHTVNNHNSQVRKA 180
>ROA1_BOVIN (P09867) Heterogeneous nuclear ribonucleoprotein A1| (Helix-destabilizing protein) (Single-strand RNA-binding protein) (hnRNP core protein A1) (Unwinding protein 1) (UP1) (Fragment) Length = 195 Score = 43.5 bits (101), Expect = 4e-04 Identities = 22/83 (26%), Positives = 41/83 (49%), Gaps = 1/83 (1%) Frame = +1 Query: 286 KEEMDSRSVFVGNVDYACTPEEVQQHFNSCGTVNRVTILTD-KFGQPKGFAYVEFVEAEA 462 KE R +F+G + + T E ++ HF GT+ ++ D + +GF +V + E Sbjct: 7 KEPEQLRKLFIGGLSFETTDESLRSHFEQWGTLTDCVVMRDPNTKRSRGFGFVTYATVEE 66 Query: 463 IQEAVKLSESELHGRQIKVAPKR 531 + A+ ++ GR ++ PKR Sbjct: 67 VDAAMNARPHKVDGRVVE--PKR 87 Score = 36.2 bits (82), Expect = 0.058 Identities = 17/73 (23%), Positives = 38/73 (52%), Gaps = 1/73 (1%) Frame = +1 Query: 304 RSVFVGNVDYACTPEEVQQHFNSCGTVNRVTILTDK-FGQPKGFAYVEFVEAEAIQEAVK 480 + +FVG + ++ +F G + + I+TD+ G+ +GFA+V F + +++ + V Sbjct: 104 KKIFVGGIKEDTEEHHLRDYFEQYGKIEVIEIMTDRGSGKKRGFAFVTFDDHDSVDKIVI 163 Query: 481 LSESELHGRQIKV 519 ++G +V Sbjct: 164 QKYHTVNGHNCEV 176
>PABP1_HUMAN (P11940) Polyadenylate-binding protein 1 (Poly(A)-binding protein| 1) (PABP 1) Length = 636 Score = 43.1 bits (100), Expect = 5e-04 Identities = 24/72 (33%), Positives = 40/72 (55%), Gaps = 1/72 (1%) Frame = +1 Query: 307 SVFVGNVDYACTPEEVQQHFNSCGTVNRVTILTDKFGQPKGFAYVEFVEAEAIQEAV-KL 483 +V++ N E ++ F G V ++TD+ G+ KGF +V F E Q+AV ++ Sbjct: 192 NVYIKNFGEDMDDERLKDLFGKFGPALSVKVMTDESGKSKGFGFVSFERHEDAQKAVDEM 251 Query: 484 SESELHGRQIKV 519 + EL+G+QI V Sbjct: 252 NGKELNGKQIYV 263 Score = 35.4 bits (80), Expect = 0.098 Identities = 20/73 (27%), Positives = 39/73 (53%) Frame = +1 Query: 307 SVFVGNVDYACTPEEVQQHFNSCGTVNRVTILTDKFGQPKGFAYVEFVEAEAIQEAVKLS 486 +++V N+D E +++ F+ GT+ ++ + G+ KGF +V F E +AV Sbjct: 295 NLYVKNLDDGIDDERLRKEFSPFGTITSAKVMMEG-GRSKGFGFVCFSSPEEATKAV--- 350 Query: 487 ESELHGRQIKVAP 525 +E++GR + P Sbjct: 351 -TEMNGRIVATKP 362
>PABP1_BOVIN (P61286) Polyadenylate-binding protein 1 (Poly(A)-binding protein| 1) (PABP 1) Length = 636 Score = 43.1 bits (100), Expect = 5e-04 Identities = 24/72 (33%), Positives = 40/72 (55%), Gaps = 1/72 (1%) Frame = +1 Query: 307 SVFVGNVDYACTPEEVQQHFNSCGTVNRVTILTDKFGQPKGFAYVEFVEAEAIQEAV-KL 483 +V++ N E ++ F G V ++TD+ G+ KGF +V F E Q+AV ++ Sbjct: 192 NVYIKNFGEDMDDERLKDLFGKFGPALSVKVMTDESGKSKGFGFVSFERHEDAQKAVDEM 251 Query: 484 SESELHGRQIKV 519 + EL+G+QI V Sbjct: 252 NGKELNGKQIYV 263 Score = 35.4 bits (80), Expect = 0.098 Identities = 20/73 (27%), Positives = 39/73 (53%) Frame = +1 Query: 307 SVFVGNVDYACTPEEVQQHFNSCGTVNRVTILTDKFGQPKGFAYVEFVEAEAIQEAVKLS 486 +++V N+D E +++ F+ GT+ ++ + G+ KGF +V F E +AV Sbjct: 295 NLYVKNLDDGIDDERLRKEFSPFGTITSAKVMMEG-GRSKGFGFVCFSSPEEATKAV--- 350 Query: 487 ESELHGRQIKVAP 525 +E++GR + P Sbjct: 351 -TEMNGRIVATKP 362
>MRD1_CANAL (Q5AJS6) Multiple RNA-binding domain-containing protein 1| Length = 841 Score = 43.1 bits (100), Expect = 5e-04 Identities = 26/98 (26%), Positives = 49/98 (50%), Gaps = 4/98 (4%) Frame = +1 Query: 244 EMQGGDPNATTSE--AKEEMDSRSVFVGNVDYACTPEEVQQHFNSCGTVNRVTILTD-KF 414 + +P T E A++ ++ +F+ N+ Y + E+ + F+ G + V I D + Sbjct: 288 QQSDNEPELTPEEQIAQKIEETGRLFIRNISYEASEEDFRSLFSQYGALEEVHIAIDTRT 347 Query: 415 GQPKGFAYVEFVEAEAIQEAVK-LSESELHGRQIKVAP 525 G+ KGF YV+F++ E A + L + GR + + P Sbjct: 348 GKSKGFLYVQFLKKEDATRAYRSLDKQIFQGRLLHILP 385 Score = 33.1 bits (74), Expect = 0.49 Identities = 14/47 (29%), Positives = 29/47 (61%) Frame = +1 Query: 340 TPEEVQQHFNSCGTVNRVTILTDKFGQPKGFAYVEFVEAEAIQEAVK 480 T E++++ F+ G V V ++ + G+ + FA++ + A+A + AVK Sbjct: 14 TEEKLREFFSKQGDVTDVKLMKKRNGESRKFAFIGYKSADAAERAVK 60 Score = 30.8 bits (68), Expect = 2.4 Identities = 23/83 (27%), Positives = 42/83 (50%), Gaps = 2/83 (2%) Frame = +1 Query: 271 TTSEAKEEMDSRSVFVGNVDYACTPEEVQQHFNSCGTVNRVTILTDKFGQP-KGFAYVEF 447 + S K+ S + + N+ + T +++ + F + G + V + KF Q +GFA+VEF Sbjct: 706 SASSIKKSGKSSKIIIKNLPFEATRKDLLELFGAFGQLKSVRV-PKKFDQSARGFAFVEF 764 Query: 448 -VEAEAIQEAVKLSESELHGRQI 513 + EA +L L GR++ Sbjct: 765 NLMKEAETAMSQLEGVHLLGRRL 787
>BOLL_MOUSE (Q924M5) Protein boule-like| Length = 281 Score = 43.1 bits (100), Expect = 5e-04 Identities = 21/76 (27%), Positives = 42/76 (55%), Gaps = 4/76 (5%) Frame = +1 Query: 310 VFVGNVDYACTPEEVQQHFNSCGTVNRVTILTDKFGQPKGFAYVEFVEAE----AIQEAV 477 +FVG +D+ ++++ F+ G+V V I+ D+ G KG+ ++ F E +QEA Sbjct: 35 IFVGGIDFKTNENDLRKFFSQYGSVKEVKIVNDRAGVSKGYGFITFETQEDAQKILQEAE 94 Query: 478 KLSESELHGRQIKVAP 525 KL+ + +++ + P Sbjct: 95 KLNYKD---KKLNIGP 107
>RBM3_HUMAN (P98179) Putative RNA-binding protein 3 (RNA-binding motif protein| 3) (RNPL) Length = 157 Score = 43.1 bits (100), Expect = 5e-04 Identities = 22/72 (30%), Positives = 41/72 (56%), Gaps = 2/72 (2%) Frame = +1 Query: 310 VFVGNVDYACTPEEVQQHFNSCGTVNRVTILTDKFGQ-PKGFAYVEFVEAEAIQEAVKLS 486 +FVG +++ + ++ HF+S G ++ V ++ D+ Q +GF ++ F E A++ Sbjct: 8 LFVGGLNFNTDEQALEDHFSSFGPISEVVVVKDRETQRSRGFGFITFTNPEHASVAMRAM 67 Query: 487 ESE-LHGRQIKV 519 E L GRQI+V Sbjct: 68 NGESLDGRQIRV 79
>PABP3_HUMAN (Q9H361) Polyadenylate-binding protein 3 (Poly(A)-binding protein| 3) (PABP 3) (Testis-specific poly(A)-binding protein) Length = 631 Score = 43.1 bits (100), Expect = 5e-04 Identities = 24/72 (33%), Positives = 40/72 (55%), Gaps = 1/72 (1%) Frame = +1 Query: 307 SVFVGNVDYACTPEEVQQHFNSCGTVNRVTILTDKFGQPKGFAYVEFVEAEAIQEAV-KL 483 +V++ N E ++ F G V ++TD+ G+ KGF +V F E Q+AV ++ Sbjct: 192 NVYIKNFGEDMDDERLKDLFGKFGPALSVKVMTDESGKSKGFGFVSFERHEDAQKAVDEM 251 Query: 484 SESELHGRQIKV 519 + EL+G+QI V Sbjct: 252 NGKELNGKQIYV 263 Score = 34.7 bits (78), Expect = 0.17 Identities = 20/73 (27%), Positives = 39/73 (53%) Frame = +1 Query: 307 SVFVGNVDYACTPEEVQQHFNSCGTVNRVTILTDKFGQPKGFAYVEFVEAEAIQEAVKLS 486 +++V N+D E +++ F+ GT+ ++ + G+ KGF +V F E +AV Sbjct: 295 NLYVKNLDDGIDDERLRKAFSPFGTITSAKVMMEG-GRSKGFGFVCFSSPEEATKAV--- 350 Query: 487 ESELHGRQIKVAP 525 +E++GR + P Sbjct: 351 -TEMNGRIVATKP 362 Score = 32.7 bits (73), Expect = 0.64 Identities = 19/72 (26%), Positives = 40/72 (55%), Gaps = 1/72 (1%) Frame = +1 Query: 307 SVFVGNVDYACTPEEVQQHFNSCGTVNRVTILTDKFGQPKGFAYVEFVEAEAIQEAV-KL 483 ++FV N+D + + + ++ G + ++ D+ G KG+ +V F EA + A+ K+ Sbjct: 100 NIFVKNLDKSINNKALYDTVSAFGNILSCNVVCDENGS-KGYGFVHFETHEAAERAIKKM 158 Query: 484 SESELHGRQIKV 519 + L+GR++ V Sbjct: 159 NGMLLNGRKVFV 170
>ROC1_ARATH (Q9ZUU4) Putative ribonucleoprotein At2g37220, chloroplast| precursor Length = 289 Score = 43.1 bits (100), Expect = 5e-04 Identities = 23/73 (31%), Positives = 43/73 (58%), Gaps = 2/73 (2%) Frame = +1 Query: 310 VFVGNVDYACTPEEVQQHFNSCGTVNRVTILTDK-FGQPKGFAYVEFVEAEAIQEAVK-L 483 V+VGN+ + ++ F+ G V ++ D+ G+ KGF +V + ++ +Q A+K L Sbjct: 206 VYVGNLSWGVDDMALESLFSEQGKVVEARVIYDRDSGRSKGFGFVTYDSSQEVQNAIKSL 265 Query: 484 SESELHGRQIKVA 522 ++L GRQI+V+ Sbjct: 266 DGADLDGRQIRVS 278
>MRD1_YARLI (Q6CEW9) Multiple RNA-binding domain-containing protein 1| Length = 828 Score = 43.1 bits (100), Expect = 5e-04 Identities = 23/81 (28%), Positives = 48/81 (59%), Gaps = 1/81 (1%) Frame = +1 Query: 274 TSEAKEEMDSRSVFVGNVDYACTPEEVQQHFNSCGTVNRVTILTDKFGQPKGFAYVEFVE 453 T+E K+ +DS+ + + N+ + T ++VQ+ F + G++ V + + +GFA+ E+V Sbjct: 694 TTETKKAIDSK-ILIKNLPFEATKKDVQKLFGAFGSLKTVRVPKKFNSESRGFAFAEYVS 752 Query: 454 AEAIQEAVK-LSESELHGRQI 513 A+ + A+ L + L GR++ Sbjct: 753 AKEAEHAMSALQGTHLLGRRL 773 Score = 39.7 bits (91), Expect = 0.005 Identities = 28/106 (26%), Positives = 51/106 (48%), Gaps = 11/106 (10%) Frame = +1 Query: 241 KEMQGGDPNATTSEAKEEMDSRSV---------FVGNVDYACTPEEVQQHFNSCGTVNRV 393 K+ +G P A T +E + ++ F+ N+ Y E+ +Q F+ G + V Sbjct: 271 KKGKGNAPKAATPVDEEPSEDPTIVSIRKTGRLFLRNLLYTAKEEDFRQLFSQYGELEEV 330 Query: 394 TI-LTDKFGQPKGFAYVEFVEAEAIQEAVKLSESEL-HGRQIKVAP 525 + + K GQ KGFA+V+F + E A + + ++ GR + + P Sbjct: 331 HLPINTKTGQCKGFAHVQFEDPENAIAAYEAQDGKIFQGRLLHILP 376 Score = 28.9 bits (63), Expect = 9.2 Identities = 24/83 (28%), Positives = 39/83 (46%), Gaps = 9/83 (10%) Frame = +1 Query: 301 SRSVFVGNVDYACTPEEVQQHFNSCG--TVNRVTILTDKFGQPK----GFAYVEFVEAEA 462 S SVFV N+++ T + F + V +V + D + K GF +VEF EA Sbjct: 604 STSVFVKNLNFKTTSRVLTDAFKALDGFLVAQVKMKPDSKNKGKFLSMGFGFVEFSSKEA 663 Query: 463 IQEAVKLSESEL---HGRQIKVA 522 + A K + + H Q+K++ Sbjct: 664 AEIAQKAMDGHVLDGHKLQLKIS 686
>DAZL_BRARE (Q9YGW7) Deleted in azoospermia-like (DAZ-like protein) (zDazl)| Length = 229 Score = 43.1 bits (100), Expect = 5e-04 Identities = 25/78 (32%), Positives = 41/78 (52%) Frame = +1 Query: 292 EMDSRSVFVGNVDYACTPEEVQQHFNSCGTVNRVTILTDKFGQPKGFAYVEFVEAEAIQE 471 +M ++FVG +D E+++ F G+V V I+T + G KG+ +V F E IQ Sbjct: 43 KMTPNTLFVGGIDMKVDENEIREFFAKYGSVKEVKIITYRGGICKGYGFVYFSEDVDIQT 102 Query: 472 AVKLSESELHGRQIKVAP 525 V S G+++K+ P Sbjct: 103 IVDQPIS-FKGKKLKLGP 119
>RU17_HUMAN (P08621) U1 small nuclear ribonucleoprotein 70 kDa (U1 snRNP 70| kDa) (snRNP70) (U1-70K) Length = 437 Score = 42.7 bits (99), Expect = 6e-04 Identities = 25/104 (24%), Positives = 57/104 (54%), Gaps = 2/104 (1%) Frame = +1 Query: 226 QAKVAKEMQGGDPNATTSEAKEEMDSRSVFVGNVDYACTPEEVQQHFNSCGTVNRVTILT 405 Q +V E++ DP+ + + +++FV V+Y T ++++ F G + R+ ++ Sbjct: 79 QQEVETELKMWDPHNDPNAQGDAF--KTLFVARVNYDTTESKLRREFEVYGPIKRIHMVY 136 Query: 406 DK-FGQPKGFAYVEFVEAEAIQEAVKLSE-SELHGRQIKVAPKR 531 K G+P+G+A++E+ + A K ++ ++ GR++ V +R Sbjct: 137 SKRSGKPRGYAFIEYEHERDMHSAYKHADGKKIDGRRVLVDVER 180
>SRR35_HUMAN (Q8WXF0) 35 kDa SR repressor protein (SRrp35)| Length = 261 Score = 42.7 bits (99), Expect = 6e-04 Identities = 25/73 (34%), Positives = 44/73 (60%), Gaps = 2/73 (2%) Frame = +1 Query: 307 SVFVGNVDYACTPEEVQQHFNSCGTVNRVTILTDKFGQ-PKGFAYVEFVEAEAIQEAV-K 480 S+F+ NV A PE++++ F G + V I D + + P+GFAYV+F + ++A+ Sbjct: 11 SLFIRNVADATRPEDLRREFGRYGPIVDVYIPLDFYTRRPRGFAYVQFEDVRDAEDALYN 70 Query: 481 LSESELHGRQIKV 519 L+ + GRQI++ Sbjct: 71 LNRKWVCGRQIEI 83
>RSP4_CAEEL (Q09511) Probable splicing factor, arginine/serine-rich 4| (RNA-binding protein srp-2) (CeSC35) Length = 196 Score = 42.7 bits (99), Expect = 6e-04 Identities = 28/91 (30%), Positives = 47/91 (51%), Gaps = 2/91 (2%) Frame = +1 Query: 253 GGDPNATTSEAKEEMDSRSVFVGNVDYACTPEEVQQHFNSCGTVNRVTILTDKFG-QPKG 429 GGD A A + S+ + N+ Y TP ++++ F G + V I DK+ Q KG Sbjct: 6 GGDRRA----APDINGLTSLKIDNLSYQTTPNDLRRTFERYGDIGDVHIPRDKYSRQSKG 61 Query: 430 FAYVEFVEAEAIQEAVKLSESEL-HGRQIKV 519 F +V F E + A+ ++ +L GR+++V Sbjct: 62 FGFVRFYERRDAEHALDRTDGKLVDGRELRV 92
>MRD1_ASHGO (Q75A83) Multiple RNA-binding domain-containing protein 1| Length = 838 Score = 42.7 bits (99), Expect = 6e-04 Identities = 25/74 (33%), Positives = 40/74 (54%), Gaps = 2/74 (2%) Frame = +1 Query: 310 VFVGNVDYACTPEEVQQHFNSCGTVNRVTILTD-KFGQPKGFAYVEFVEAE-AIQEAVKL 483 +F+ N+ Y T E+ +Q F+ G + V + D + GQ KGFAYV F + E A ++L Sbjct: 303 LFLRNILYDATEEDFKQLFSPYGELEEVHVAVDTRTGQSKGFAYVLFKDPEHAANAYIEL 362 Query: 484 SESELHGRQIKVAP 525 + GR + + P Sbjct: 363 DKQIFQGRLLHILP 376 Score = 34.3 bits (77), Expect = 0.22 Identities = 23/81 (28%), Positives = 42/81 (51%), Gaps = 1/81 (1%) Frame = +1 Query: 274 TSEAKEEMDSRSVFVGNVDYACTPEEVQQHFNSCGTVNRVTILTDKFGQPKGFAYVEF-V 450 TS+ ++ S + V N+ + T ++V + F+S G + V + +GFA+VEF + Sbjct: 702 TSKGSKKKISGKIIVKNLPFEATRKDVFELFSSFGQLKSVRVPKKFDKSARGFAFVEFLL 761 Query: 451 EAEAIQEAVKLSESELHGRQI 513 +EA +L L GR++ Sbjct: 762 PSEAENAMDQLQGVHLLGRRL 782
>RU17_MOUSE (Q62376) U1 small nuclear ribonucleoprotein 70 kDa (U1 SNRNP 70| kDa) (snRNP70) Length = 448 Score = 42.7 bits (99), Expect = 6e-04 Identities = 25/104 (24%), Positives = 57/104 (54%), Gaps = 2/104 (1%) Frame = +1 Query: 226 QAKVAKEMQGGDPNATTSEAKEEMDSRSVFVGNVDYACTPEEVQQHFNSCGTVNRVTILT 405 Q +V E++ DP+ + + +++FV V+Y T ++++ F G + R+ ++ Sbjct: 79 QQEVETELKMWDPHNDPNAQGDAF--KTLFVARVNYDTTESKLRREFEVYGPIKRIHMVY 136 Query: 406 DK-FGQPKGFAYVEFVEAEAIQEAVKLSE-SELHGRQIKVAPKR 531 K G+P+G+A++E+ + A K ++ ++ GR++ V +R Sbjct: 137 SKRSGKPRGYAFIEYEHERDMHSAYKHADGKKIDGRRVLVDVER 180
>RBM19_MOUSE (Q8R3C6) Probable RNA-binding protein 19 (RNA-binding motif protein| 19) Length = 952 Score = 42.4 bits (98), Expect = 8e-04 Identities = 29/102 (28%), Positives = 54/102 (52%), Gaps = 12/102 (11%) Frame = +1 Query: 256 GDPNATT---------SEAKEEM-DSRSVFVGNVDYACTPEEVQQHFNSCGTVNRVTILT 405 G P +TT +E +E++ DS +FV N+ Y + E++++ F++ G ++ + Sbjct: 374 GPPKSTTPWQGRTLGENEEEEDLADSGRLFVRNLSYTSSEEDLEKLFSAYGPLSELHYPI 433 Query: 406 DKFGQ-PKGFAYVEFVEAE-AIQEAVKLSESELHGRQIKVAP 525 D + PKGFA+V F+ E A++ ++ GR + V P Sbjct: 434 DSLTKKPKGFAFVTFMFPEHAVKAYAEVDGQVFQGRMLHVLP 475 Score = 34.7 bits (78), Expect = 0.17 Identities = 22/85 (25%), Positives = 44/85 (51%), Gaps = 5/85 (5%) Frame = +1 Query: 280 EAKEEMDSRSVFVGNVDYACTPEEVQQHFNSCGTVNRVTILTDKFGQ----PKGFAYVEF 447 E +E + ++F+ N++++ T E ++ F+ G + TI K GF +VE+ Sbjct: 714 EEEESIPGCTLFIKNLNFSTTEETLKGVFSKVGAIKSCTISKKKNKAGVLLSMGFGFVEY 773 Query: 448 VEAEAIQEAVK-LSESELHGRQIKV 519 + E Q+A+K L + G +++V Sbjct: 774 KKPEQAQKALKQLQGHTVDGHKLEV 798
>HRP1_YEAST (Q99383) Nuclear polyadenylated RNA-binding protein 4 (Cleavage| factor IB) (CFIB) Length = 534 Score = 42.4 bits (98), Expect = 8e-04 Identities = 25/86 (29%), Positives = 49/86 (56%), Gaps = 1/86 (1%) Frame = +1 Query: 277 SEAKEEMDSRSVFVGNVDYACTPEEVQQHFNSCGTVNRVTILTD-KFGQPKGFAYVEFVE 453 S+A +S +F+G +++ T + ++++F GTV + I+ D G+ +GF ++ F + Sbjct: 150 SKADLSKESCKMFIGGLNWDTTEDNLREYFGKYGTVTDLKIMKDPATGRSRGFGFLSFEK 209 Query: 454 AEAIQEAVKLSESELHGRQIKVAPKR 531 ++ E VK ++ L G+ I PKR Sbjct: 210 PSSVDEVVK-TQHILDGKVID--PKR 232 Score = 40.4 bits (93), Expect = 0.003 Identities = 20/78 (25%), Positives = 41/78 (52%), Gaps = 1/78 (1%) Frame = +1 Query: 289 EEMDSRSVFVGNVDYACTPEEVQQHFNSCGTVNRVTILTDK-FGQPKGFAYVEFVEAEAI 465 E+ + +FVG + P+E ++ F+ GT+ ++ DK GQ +GF +V + A+A+ Sbjct: 238 EQDKTGKIFVGGIGPDVRPKEFEEFFSQWGTIIDAQLMLDKDTGQSRGFGFVTYDSADAV 297 Query: 466 QEAVKLSESELHGRQIKV 519 + + R+I++ Sbjct: 298 DRVCQNKFIDFKDRKIEI 315
>RU17_XENTR (Q66II8) U1 small nuclear ribonucleoprotein 70 kDa (U1 snRNP 70| kDa) (snRNP70) (U1-70K) Length = 471 Score = 42.4 bits (98), Expect = 8e-04 Identities = 25/104 (24%), Positives = 57/104 (54%), Gaps = 2/104 (1%) Frame = +1 Query: 226 QAKVAKEMQGGDPNATTSEAKEEMDSRSVFVGNVDYACTPEEVQQHFNSCGTVNRVTILT 405 Q V E++ DP+ + + +++FV V+Y T ++++ F G + R+ ++ Sbjct: 79 QQDVENELKIWDPHNDQNAQGDAF--KTLFVARVNYDTTESKLRREFEVYGPIKRIHMVY 136 Query: 406 DK-FGQPKGFAYVEFVEAEAIQEAVKLSE-SELHGRQIKVAPKR 531 +K G+P+G+A++E+ + A K ++ ++ GR++ V +R Sbjct: 137 NKRSGKPRGYAFIEYEHERDMHSAYKHADGKKIDGRRVLVDVER 180
>RU17_XENLA (P09406) U1 small nuclear ribonucleoprotein 70 kDa (U1 snRNP 70| kDa) (snRNP70) (U1-70K) Length = 471 Score = 42.4 bits (98), Expect = 8e-04 Identities = 26/107 (24%), Positives = 57/107 (53%), Gaps = 5/107 (4%) Frame = +1 Query: 226 QAKVAKEMQGGDPNATTSEAKEEMDSRSVFVGNVDYACTPEEVQQHFNSCGTVNRVTILT 405 Q V E++ DP+ + + +++FV V+Y T ++++ F G + R+ I+ Sbjct: 79 QQDVENELKIWDPHNDQNAQGDAF--KTLFVARVNYDTTESKLRREFEVYGPIKRIHIVY 136 Query: 406 DK----FGQPKGFAYVEFVEAEAIQEAVKLSE-SELHGRQIKVAPKR 531 +K G+P+G+A++E+ + A K ++ ++ GR++ V +R Sbjct: 137 NKGSEGSGKPRGYAFIEYEHERDMHSAYKHADGKKIDGRRVLVDVER 183
>ROC2_ARATH (Q43349) 29 kDa ribonucleoprotein, chloroplast precursor| (RNA-binding protein cp29) Length = 342 Score = 42.0 bits (97), Expect = 0.001 Identities = 22/73 (30%), Positives = 43/73 (58%), Gaps = 2/73 (2%) Frame = +1 Query: 310 VFVGNVDYACTPEEVQQHFNSCGTVNRVTILTDK-FGQPKGFAYVEFVEAEAIQEAV-KL 483 ++VGN+ + ++ FN G V ++ D+ G+ KGF +V ++ +Q+A+ L Sbjct: 259 LYVGNLSWGVDDMALENLFNEQGKVVEARVIYDRDSGRSKGFGFVTLSSSQEVQKAINSL 318 Query: 484 SESELHGRQIKVA 522 + ++L GRQI+V+ Sbjct: 319 NGADLDGRQIRVS 331
>CUGB1_MOUSE (P28659) CUG triplet repeat RNA-binding protein 1 (CUG-BP1)| (RNA-binding protein BRUNOL-2) (Deadenylation factor CUG-BP) (Deadenylation factor EDEN-BP) (Brain protein F41) Length = 486 Score = 42.0 bits (97), Expect = 0.001 Identities = 20/68 (29%), Positives = 33/68 (48%) Frame = +1 Query: 277 SEAKEEMDSRSVFVGNVDYACTPEEVQQHFNSCGTVNRVTILTDKFGQPKGFAYVEFVEA 456 SE ++ R +F+G + CT +++ F+S G + IL G +G A+V F Sbjct: 99 SEKNNAVEDRKLFIGMISKKCTENDIRVMFSSFGQIEECRILRGPDGLSRGCAFVTFTTR 158 Query: 457 EAIQEAVK 480 Q A+K Sbjct: 159 TMAQTAIK 166
>CUGB1_HUMAN (Q92879) CUG triplet repeat RNA-binding protein 1 (CUG-BP1)| (RNA-binding protein BRUNOL-2) (Deadenylation factor CUG-BP) (50 kDa Nuclear polyadenylated RNA-binding protein) (EDEN-BP) Length = 486 Score = 42.0 bits (97), Expect = 0.001 Identities = 20/68 (29%), Positives = 33/68 (48%) Frame = +1 Query: 277 SEAKEEMDSRSVFVGNVDYACTPEEVQQHFNSCGTVNRVTILTDKFGQPKGFAYVEFVEA 456 SE ++ R +F+G + CT +++ F+S G + IL G +G A+V F Sbjct: 99 SEKNNAVEDRKLFIGMISKKCTENDIRVMFSSFGQIEECRILRGPDGLSRGCAFVTFTTR 158 Query: 457 EAIQEAVK 480 Q A+K Sbjct: 159 AMAQTAIK 166
>SXL_MUSDO (O17310) Sex-lethal homolog| Length = 324 Score = 41.6 bits (96), Expect = 0.001 Identities = 21/64 (32%), Positives = 37/64 (57%), Gaps = 1/64 (1%) Frame = +1 Query: 289 EEMDSRSVFVGNVDYACTPEEVQQHFNSCGTVNRVTILTDKF-GQPKGFAYVEFVEAEAI 465 E + +++V N+ T +E+++ F G + + IL DK G+P+G A+V F + E Sbjct: 183 ESIKDTNLYVTNLPRTITDDELEKIFGKYGNIVQKNILRDKLTGRPRGVAFVRFNKREEA 242 Query: 466 QEAV 477 QEA+ Sbjct: 243 QEAI 246 Score = 36.2 bits (82), Expect = 0.058 Identities = 25/95 (26%), Positives = 47/95 (49%), Gaps = 2/95 (2%) Frame = +1 Query: 253 GGDPNATTSEAKEEMDSRSVFVGNVDYACTPEEVQQHFNSCGTVNRVTILTD-KFGQPKG 429 GGD ++A ++ ++ V + T E+ F +CG +N I+ D K G G Sbjct: 88 GGDGGGGDTQA---VNGTNLIVNYLPQDMTDRELYALFRTCGPINTCRIMKDYKTGYSFG 144 Query: 430 FAYVEFVEAEAIQEAVK-LSESELHGRQIKVAPKR 531 +A+V+F Q A+K ++ + +++KV+ R Sbjct: 145 YAFVDFASEIDAQNAIKTVNGITVRNKRLKVSYAR 179
>NUCL_MOUSE (P09405) Nucleolin (Protein C23)| Length = 706 Score = 41.6 bits (96), Expect = 0.001 Identities = 20/75 (26%), Positives = 44/75 (58%), Gaps = 1/75 (1%) Frame = +1 Query: 298 DSRSVFVGNVDYACTPEEVQQHFNSCGTVNRVTILTDKFGQPKGFAYVEFVEAEAIQEAV 477 +S+++ + N+ Y+ T E +++ F + + + G+PKG+A++EF E +EA+ Sbjct: 484 ESKTLVLSNLSYSATKETLEEVFEKATFIK---VPQNPHGKPKGYAFIEFASFEDAKEAL 540 Query: 478 -KLSESELHGRQIKV 519 ++ E+ GR I++ Sbjct: 541 NSCNKMEIEGRTIRL 555 Score = 39.7 bits (91), Expect = 0.005 Identities = 33/159 (20%), Positives = 68/159 (42%) Frame = +1 Query: 43 AQHAAAMEDEEHEVYGQEIPVDAEDVEMGAGGDDAAKLHELDXXXXXXXXXXXXXXXXXX 222 A+ A ED+E E E D +D E DD + E Sbjct: 235 AKSVAEEEDDEEEDEDDE---DEDDEEEDDEDDDEEEEEE-----------EPVKAAPGK 280 Query: 223 XQAKVAKEMQGGDPNATTSEAKEEMDSRSVFVGNVDYACTPEEVQQHFNSCGTVNRVTIL 402 + ++ K+ + + E E ++F+GN++ + E++ + N + ++ Sbjct: 281 RKKEMTKQKEAPEAKKQKVEGSEPTTPFNLFIGNLNPNKSVNELKFAISELFAKNDLAVV 340 Query: 403 TDKFGQPKGFAYVEFVEAEAIQEAVKLSESELHGRQIKV 519 + G + F YV+F AE +++A++L+ ++ G +IK+ Sbjct: 341 DVRTGTNRKFGYVDFESAEDLEKALELTGLKVFGNEIKL 379 Score = 32.0 bits (71), Expect = 1.1 Identities = 24/75 (32%), Positives = 44/75 (58%), Gaps = 4/75 (5%) Frame = +1 Query: 301 SRSVFVGNVDYACTPEEVQQHFNSCGTVNRVTILTDK-FGQPKGFAYVEF---VEAEAIQ 468 S+++FV + T E +++ F G+V R I+TD+ G KGF +V+F +A+A + Sbjct: 567 SKTLFVKGLSEDTTEETLKESFE--GSV-RARIVTDRETGSSKGFGFVDFNSEEDAKAAK 623 Query: 469 EAVKLSESELHGRQI 513 EA + + E+ G ++ Sbjct: 624 EA--MEDGEIDGNKV 636
>HNRPR_HUMAN (O43390) Heterogeneous nuclear ribonucleoprotein R (hnRNP R)| Length = 633 Score = 41.6 bits (96), Expect = 0.001 Identities = 25/81 (30%), Positives = 39/81 (48%), Gaps = 1/81 (1%) Frame = +1 Query: 253 GGDPNATTSEAKEEMDSRSVFVGNVDYACTPEEVQQHFNSCGTVNRVTILTDKF-GQPKG 429 GG P + + VFVG + +E+ F G + + ++ D GQ +G Sbjct: 148 GGPPPDSVYSGVQPGIGTEVFVGKIPRDLYEDELVPLFEKAGPIWDLRLMMDPLSGQNRG 207 Query: 430 FAYVEFVEAEAIQEAVKLSES 492 +A++ F EA QEAVKL +S Sbjct: 208 YAFITFCGKEAAQEAVKLCDS 228
>RBPA_SYNY3 (Q57014) Putative RNA-binding protein rbpA| Length = 101 Score = 41.6 bits (96), Expect = 0.001 Identities = 27/74 (36%), Positives = 44/74 (59%), Gaps = 3/74 (4%) Frame = +1 Query: 307 SVFVGNVDYACTPEEVQQHFNSCGTVNRVTILTDK-FGQPKGFAYVEFVEAEAIQEAV-- 477 S++VGN+ Y + ++ F G+V RV + TD+ G+ +GF +VE +EA+A + A Sbjct: 2 SIYVGNLSYDVSEADLTAVFAEYGSVKRVQLPTDRETGRMRGFGFVE-LEADAEETAAIE 60 Query: 478 KLSESELHGRQIKV 519 L +E GR +KV Sbjct: 61 ALDGAEWMGRDLKV 74
>SXL_CHRRU (O97018) Sex-lethal homolog| Length = 307 Score = 41.6 bits (96), Expect = 0.001 Identities = 21/64 (32%), Positives = 37/64 (57%), Gaps = 1/64 (1%) Frame = +1 Query: 289 EEMDSRSVFVGNVDYACTPEEVQQHFNSCGTVNRVTILTDKF-GQPKGFAYVEFVEAEAI 465 E + +++V N+ T +E+++ F G + + IL DK G+P+G A+V F + E Sbjct: 166 ESIKDTNLYVTNLPRTITDDELEKIFGKYGNIVQKNILRDKLTGKPRGVAFVRFNKREEA 225 Query: 466 QEAV 477 QEA+ Sbjct: 226 QEAI 229 Score = 34.7 bits (78), Expect = 0.17 Identities = 21/66 (31%), Positives = 35/66 (53%), Gaps = 2/66 (3%) Frame = +1 Query: 340 TPEEVQQHFNSCGTVNRVTILTD-KFGQPKGFAYVEFVEAEAIQEAVK-LSESELHGRQI 513 T E+ F +CG +N I+ D K G G+A+V+F Q A+K L+ + +++ Sbjct: 97 TDRELYALFRTCGPINTCRIMKDYKTGYSFGYAFVDFASEIDAQNAIKSLNGVTVRNKRL 156 Query: 514 KVAPKR 531 KV+ R Sbjct: 157 KVSYAR 162
>PABP5_ARATH (Q05196) Polyadenylate-binding protein 5 (Poly(A)-binding protein| 5) (PABP 5) Length = 668 Score = 41.6 bits (96), Expect = 0.001 Identities = 22/72 (30%), Positives = 42/72 (58%), Gaps = 1/72 (1%) Frame = +1 Query: 307 SVFVGNVDYACTPEEVQQHFNSCGTVNRVTILTDKFGQPKGFAYVEFVEAEAIQEAV-KL 483 +VF+ N+D + + + + F+S GT+ + D G+ KG+ +V+F + E Q A+ KL Sbjct: 133 NVFIKNLDASIDNKALYETFSSFGTILSCKVAMDVVGRSKGYGFVQFEKEETAQAAIDKL 192 Query: 484 SESELHGRQIKV 519 + L+ +Q+ V Sbjct: 193 NGMLLNDKQVFV 204 Score = 37.0 bits (84), Expect = 0.034 Identities = 21/85 (24%), Positives = 42/85 (49%), Gaps = 1/85 (1%) Frame = +1 Query: 268 ATTSEAKEEMDSRSVFVGNVDYACTPEEVQQHFNSCGTVNRVTILTDKFGQPKGFAYVEF 447 A +EA + + S++VG++D + + FN V+ + + D + G+AYV F Sbjct: 33 AAAAEALQTHPNSSLYVGDLDPSVNESHLLDLFNQVAPVHNLRVCRDLTHRSLGYAYVNF 92 Query: 448 VEAEAIQEAVK-LSESELHGRQIKV 519 E A++ L+ + + R I++ Sbjct: 93 ANPEDASRAMESLNYAPIRDRPIRI 117 Score = 35.8 bits (81), Expect = 0.075 Identities = 16/74 (21%), Positives = 39/74 (52%) Frame = +1 Query: 289 EEMDSRSVFVGNVDYACTPEEVQQHFNSCGTVNRVTILTDKFGQPKGFAYVEFVEAEAIQ 468 E++ ++++ N+D + E++++ F+ G V ++ + G +GF +V + E Sbjct: 323 EKLQGSNLYLKNLDDSVNDEKLKEMFSEYGNVTSCKVMMNSQGLSRGFGFVAYSNPEEAL 382 Query: 469 EAVKLSESELHGRQ 510 A+K ++ GR+ Sbjct: 383 LAMKEMNGKMIGRK 396
>NOP4_YEAST (P37838) Nucleolar protein NOP4 (Nucleolar protein NOP77)| Length = 685 Score = 41.2 bits (95), Expect = 0.002 Identities = 24/68 (35%), Positives = 35/68 (51%), Gaps = 1/68 (1%) Frame = +1 Query: 280 EAKEEMDSRSVFVGNVDYACTPEEVQQHFNSCGTVNRVTILTDK-FGQPKGFAYVEFVEA 456 +A+ + + SVFV NV Y T E + HF+ G+V + DK G KG A+V F + Sbjct: 282 KAQNKREDFSVFVRNVPYDATEESLAPHFSKFGSVKYALPVIDKSTGLAKGTAFVAFKDQ 341 Query: 457 EAIQEAVK 480 E +K Sbjct: 342 YTYNECIK 349
>PABP5_PONPY (P60050) Polyadenylate-binding protein 5 (Poly(A)-binding protein| 5) (PABP 5) Length = 382 Score = 41.2 bits (95), Expect = 0.002 Identities = 24/85 (28%), Positives = 41/85 (48%) Frame = +1 Query: 259 DPNATTSEAKEEMDSRSVFVGNVDYACTPEEVQQHFNSCGTVNRVTILTDKFGQPKGFAY 438 + A ++ +VFV N+ E++++ F G V ++ D G+ KGF + Sbjct: 184 EERAAEVRTRDRATFTNVFVKNIGDDIDDEKLKELFCEYGPTESVKVIRDASGKSKGFGF 243 Query: 439 VEFVEAEAIQEAVKLSESELHGRQI 513 V + EA Q+AV +LHG+ I Sbjct: 244 VRYETHEAAQKAV----LDLHGKSI 264
>PABP5_PANTR (P60049) Polyadenylate-binding protein 5 (Poly(A)-binding protein| 5) (PABP 5) Length = 382 Score = 41.2 bits (95), Expect = 0.002 Identities = 24/85 (28%), Positives = 41/85 (48%) Frame = +1 Query: 259 DPNATTSEAKEEMDSRSVFVGNVDYACTPEEVQQHFNSCGTVNRVTILTDKFGQPKGFAY 438 + A ++ +VFV N+ E++++ F G V ++ D G+ KGF + Sbjct: 184 EERAAEVRTRDRATFTNVFVKNIGDDIDDEKLKELFCEYGPTESVKVIRDASGKSKGFGF 243 Query: 439 VEFVEAEAIQEAVKLSESELHGRQI 513 V + EA Q+AV +LHG+ I Sbjct: 244 VRYETHEAAQKAV----LDLHGKSI 264
>PABP5_MACMU (Q7JGR2) Polyadenylate-binding protein 5 (Poly(A)-binding protein| 5) (PABP 5) Length = 382 Score = 41.2 bits (95), Expect = 0.002 Identities = 24/85 (28%), Positives = 41/85 (48%) Frame = +1 Query: 259 DPNATTSEAKEEMDSRSVFVGNVDYACTPEEVQQHFNSCGTVNRVTILTDKFGQPKGFAY 438 + A ++ +VFV N+ E++++ F G V ++ D G+ KGF + Sbjct: 184 EERAAEVRTRDRATFTNVFVKNIGDDIDDEKLKELFCEYGPTESVKVIRDASGKSKGFGF 243 Query: 439 VEFVEAEAIQEAVKLSESELHGRQI 513 V + EA Q+AV +LHG+ I Sbjct: 244 VRYETHEAAQKAV----LDLHGKSI 264
>PABP5_HYLLA (P60048) Polyadenylate-binding protein 5 (Poly(A)-binding protein| 5) (PABP 5) Length = 382 Score = 41.2 bits (95), Expect = 0.002 Identities = 24/85 (28%), Positives = 41/85 (48%) Frame = +1 Query: 259 DPNATTSEAKEEMDSRSVFVGNVDYACTPEEVQQHFNSCGTVNRVTILTDKFGQPKGFAY 438 + A ++ +VFV N+ E++++ F G V ++ D G+ KGF + Sbjct: 184 EERAAEVRTRDRATFTNVFVKNIGDDIDDEKLKELFCEYGPTESVKVIRDASGKSKGFGF 243 Query: 439 VEFVEAEAIQEAVKLSESELHGRQI 513 V + EA Q+AV +LHG+ I Sbjct: 244 VRYETHEAAQKAV----LDLHGKSI 264
>PABP5_HUMAN (Q96DU9) Polyadenylate-binding protein 5 (Poly(A)-binding protein| 5) (PABP 5) Length = 382 Score = 41.2 bits (95), Expect = 0.002 Identities = 24/85 (28%), Positives = 41/85 (48%) Frame = +1 Query: 259 DPNATTSEAKEEMDSRSVFVGNVDYACTPEEVQQHFNSCGTVNRVTILTDKFGQPKGFAY 438 + A ++ +VFV N+ E++++ F G V ++ D G+ KGF + Sbjct: 184 EERAAEVRTRDRATFTNVFVKNIGDDIDDEKLKELFCEYGPTESVKVIRDASGKSKGFGF 243 Query: 439 VEFVEAEAIQEAVKLSESELHGRQI 513 V + EA Q+AV +LHG+ I Sbjct: 244 VRYETHEAAQKAV----LDLHGKSI 264
>PABP5_GORGO (P60047) Polyadenylate-binding protein 5 (Poly(A)-binding protein| 5) (PABP 5) Length = 382 Score = 41.2 bits (95), Expect = 0.002 Identities = 24/85 (28%), Positives = 41/85 (48%) Frame = +1 Query: 259 DPNATTSEAKEEMDSRSVFVGNVDYACTPEEVQQHFNSCGTVNRVTILTDKFGQPKGFAY 438 + A ++ +VFV N+ E++++ F G V ++ D G+ KGF + Sbjct: 184 EERAAEVRTRDRATFTNVFVKNIGDDIDDEKLKELFCEYGPTESVKVIRDASGKSKGFGF 243 Query: 439 VEFVEAEAIQEAVKLSESELHGRQI 513 V + EA Q+AV +LHG+ I Sbjct: 244 VRYETHEAAQKAV----LDLHGKSI 264
>MRD1_NEUCR (Q7SG09) Multiple RNA-binding domain-containing protein 1| Length = 827 Score = 41.2 bits (95), Expect = 0.002 Identities = 19/72 (26%), Positives = 36/72 (50%) Frame = +1 Query: 310 VFVGNVDYACTPEEVQQHFNSCGTVNRVTILTDKFGQPKGFAYVEFVEAEAIQEAVKLSE 489 +F+ N+ Y T ++V++HF G + V + D G KGFA + + + + A + Sbjct: 310 LFLRNLSYTVTEDDVREHFAKFGILVEVHVPLDSKGHSKGFAMIRYEKPASALAAFQTDG 369 Query: 490 SELHGRQIKVAP 525 + GR + + P Sbjct: 370 TVFQGRIVHILP 381
>ROA3_HUMAN (P51991) Heterogeneous nuclear ribonucleoprotein A3 (hnRNP A3)| Length = 378 Score = 40.8 bits (94), Expect = 0.002 Identities = 21/85 (24%), Positives = 44/85 (51%), Gaps = 1/85 (1%) Frame = +1 Query: 280 EAKEEMDSRSVFVGNVDYACTPEEVQQHFNSCGTVNRVTILTD-KFGQPKGFAYVEFVEA 456 + KE R +F+G + + T + +++HF GT+ ++ D + + +GF +V + Sbjct: 27 DPKEPEQLRKLFIGGLSFETTDDSLREHFEKWGTLTDCVVMRDPQTKRSRGFGFVTYSCV 86 Query: 457 EAIQEAVKLSESELHGRQIKVAPKR 531 E + A+ ++ GR ++ PKR Sbjct: 87 EEVDAAMCARPHKVDGRVVE--PKR 109
>MRD1_EMENI (Q5BGA9) Multiple RNA-binding domain-containing protein 1| Length = 819 Score = 40.8 bits (94), Expect = 0.002 Identities = 22/77 (28%), Positives = 41/77 (53%), Gaps = 2/77 (2%) Frame = +1 Query: 301 SRSVFVGNVDYACTPEEVQQHFNSCGTVNRVTILTD-KFGQPKGFAYVEFVEAEAIQEAV 477 S +FV N+ Y E++ F+ G + + + D +F KGFAYV++ + +A EA Sbjct: 294 SARLFVRNLSYETKESELEPVFSPFGKIEEIHVAFDTRFTTSKGFAYVQYADPDAAVEAY 353 Query: 478 KLSESEL-HGRQIKVAP 525 + + ++ GR + + P Sbjct: 354 RNLDGKIFQGRLLHILP 370 Score = 31.6 bits (70), Expect = 1.4 Identities = 21/93 (22%), Positives = 42/93 (45%), Gaps = 2/93 (2%) Frame = +1 Query: 241 KEMQGGDPNATTSEAKEEMDSRS-VFVGNVDYACTPEEVQQHFNSCGTVNRVTILTDKFG 417 K M + AK+ R+ + + N+ + T ++V+ F + G + V + Sbjct: 675 KGMDAAEERRKEDTAKKIAARRTKIIIKNLPFQATKKDVRSLFGAYGQLRSVRVPKKFDR 734 Query: 418 QPKGFAYVEFVEAEAIQEAV-KLSESELHGRQI 513 +GF + +FV A + A+ L + L GR++ Sbjct: 735 SARGFGFADFVSAREAENAMDALKNTHLLGRRL 767
>ROA3_RAT (Q6URK4) Heterogeneous nuclear ribonucleoprotein A3 (hnRNP A3)| Length = 379 Score = 40.8 bits (94), Expect = 0.002 Identities = 21/85 (24%), Positives = 44/85 (51%), Gaps = 1/85 (1%) Frame = +1 Query: 280 EAKEEMDSRSVFVGNVDYACTPEEVQQHFNSCGTVNRVTILTD-KFGQPKGFAYVEFVEA 456 + KE R +F+G + + T + +++HF GT+ ++ D + + +GF +V + Sbjct: 27 DPKEPEQLRKLFIGGLSFETTDDSLREHFEKWGTLTDCVVMRDPQTKRSRGFGFVTYSCV 86 Query: 457 EAIQEAVKLSESELHGRQIKVAPKR 531 E + A+ ++ GR ++ PKR Sbjct: 87 EEVDAAMCARPHKVDGRVVE--PKR 109
>ROA3_MOUSE (Q8BG05) Heterogeneous nuclear ribonucleoprotein A3 (hnRNP A3)| Length = 379 Score = 40.8 bits (94), Expect = 0.002 Identities = 21/85 (24%), Positives = 44/85 (51%), Gaps = 1/85 (1%) Frame = +1 Query: 280 EAKEEMDSRSVFVGNVDYACTPEEVQQHFNSCGTVNRVTILTD-KFGQPKGFAYVEFVEA 456 + KE R +F+G + + T + +++HF GT+ ++ D + + +GF +V + Sbjct: 27 DPKEPEQLRKLFIGGLSFETTDDSLREHFEKWGTLTDCVVMRDPQTKRSRGFGFVTYSCV 86 Query: 457 EAIQEAVKLSESELHGRQIKVAPKR 531 E + A+ ++ GR ++ PKR Sbjct: 87 EEVDAAMCARPHKVDGRVVE--PKR 109
>HNRPM_MOUSE (Q9D0E1) Heterogeneous nuclear ribonucleoprotein M (hnRNP M)| Length = 728 Score = 40.4 bits (93), Expect = 0.003 Identities = 20/64 (31%), Positives = 36/64 (56%) Frame = +1 Query: 307 SVFVGNVDYACTPEEVQQHFNSCGTVNRVTILTDKFGQPKGFAYVEFVEAEAIQEAVKLS 486 +VFV N+DY +++++ F+ G V R IL DK G+ +G V F ++ +A+ + Sbjct: 203 TVFVANLDYKVGWKKLKEVFSMAGVVVRADILEDKDGKSRGIGIVTFEQSIEAVQAISMF 262 Query: 487 ESEL 498 +L Sbjct: 263 NGQL 266 Score = 34.3 bits (77), Expect = 0.22 Identities = 22/71 (30%), Positives = 36/71 (50%), Gaps = 1/71 (1%) Frame = +1 Query: 310 VFVGNVDYACTPEEVQQHFNSCGTVNRVTILTDKFGQPKGFAYVEFVEAEAIQEAVKLSE 489 +FV N+ + T + ++ FN CG V I + G+ KG V+F E + A ++ Sbjct: 653 IFVRNLPFDFTWKMLKDKFNECGHVLYADIKMEN-GKSKGCGVVKFESPEVAERACRMMN 711 Query: 490 S-ELHGRQIKV 519 +L GR+I V Sbjct: 712 GMKLSGREIDV 722
>PABP_YEAST (P04147) Polyadenylate-binding protein, cytoplasmic and nuclear| (Poly(A)-binding protein) (PABP) (ARS consensus-binding protein ACBP-67) (Polyadenylate tail-binding protein) Length = 576 Score = 40.4 bits (93), Expect = 0.003 Identities = 25/76 (32%), Positives = 42/76 (55%), Gaps = 1/76 (1%) Frame = +1 Query: 301 SRSVFVGNVDYACTPEEVQQHFNSCGTVNRVTILTDKFGQPKGFAYVEFVEAEAIQEAV- 477 S ++F+ N+ + + F+ G + I TD+ G+ KGF +V F E A +EA+ Sbjct: 124 SGNIFIKNLHPDIDNKALYDTFSVFGDILSSKIATDENGKSKGFGFVHFEEEGAAKEAID 183 Query: 478 KLSESELHGRQIKVAP 525 L+ L+G++I VAP Sbjct: 184 ALNGMLLNGQEIYVAP 199 Score = 36.2 bits (82), Expect = 0.058 Identities = 19/73 (26%), Positives = 41/73 (56%), Gaps = 1/73 (1%) Frame = +1 Query: 307 SVFVGNVDYACTPEEVQQHFNSCGTVNRVTILTDKFGQPKGFAYVEFVEAEAIQEAV-KL 483 ++FV N+D + E++++ F GT+ ++ + G+ KGF +V F E +A+ + Sbjct: 322 NLFVKNLDDSVDDEKLEEEFAPYGTITSAKVMRTENGKSKGFGFVCFSTPEEATKAITEK 381 Query: 484 SESELHGRQIKVA 522 ++ + G+ + VA Sbjct: 382 NQQIVAGKPLYVA 394
>MRD1_YEAST (Q06106) Multiple RNA-binding domain-containing protein 1| Length = 887 Score = 40.4 bits (93), Expect = 0.003 Identities = 27/92 (29%), Positives = 48/92 (52%), Gaps = 4/92 (4%) Frame = +1 Query: 262 PNATTSEAKEEMDSRS--VFVGNVDYACTPEEVQQHFNSCGTVNRVTILTD-KFGQPKGF 432 P T E E +++ +F+ N+ Y E+ ++ F+ G + V + D + GQ KGF Sbjct: 329 PQKTDEELAIEKINQTGRLFLRNILYTSKEEDFRKLFSPFGELEEVHVALDTRTGQSKGF 388 Query: 433 AYVEFVEAE-AIQEAVKLSESELHGRQIKVAP 525 AYV F +++ A+ V+L + GR + + P Sbjct: 389 AYVLFKDSKNAVNAYVELDKQIFQGRLLHILP 420 Score = 35.8 bits (81), Expect = 0.075 Identities = 21/76 (27%), Positives = 38/76 (50%) Frame = +1 Query: 277 SEAKEEMDSRSVFVGNVDYACTPEEVQQHFNSCGTVNRVTILTDKFGQPKGFAYVEFVEA 456 ++ K S + V N+ + T ++V + FNS G + V + +GFA+VEF+ Sbjct: 754 TKTKSNKKSGKIIVKNLPFEATRKDVFELFNSFGQLKSVRVPKKFDKSARGFAFVEFLLP 813 Query: 457 EAIQEAVKLSESELHG 504 + + A+ +LHG Sbjct: 814 KEAENAM----DQLHG 825
>DAZ1_CAEEL (Q20870) DAZ protein 1| Length = 499 Score = 40.4 bits (93), Expect = 0.003 Identities = 21/76 (27%), Positives = 37/76 (48%) Frame = +1 Query: 292 EMDSRSVFVGNVDYACTPEEVQQHFNSCGTVNRVTILTDKFGQPKGFAYVEFVEAEAIQE 471 E+ +FVG + T E+++HF V V ++ GQ KG+ ++ F + +E Sbjct: 63 ELIPNRIFVGGFPTSTTETELREHFEKFFAVKDVKMVKSLDGQSKGYGFITFETEDQAEE 122 Query: 472 AVKLSESELHGRQIKV 519 KL+ +L R K+ Sbjct: 123 IRKLTPKQLEFRSRKL 138
>SXL_MEGSC (O01671) Sex-lethal homolog| Length = 321 Score = 40.4 bits (93), Expect = 0.003 Identities = 20/64 (31%), Positives = 37/64 (57%), Gaps = 1/64 (1%) Frame = +1 Query: 289 EEMDSRSVFVGNVDYACTPEEVQQHFNSCGTVNRVTILTDKF-GQPKGFAYVEFVEAEAI 465 E++ +++V N+ + T E+++ F G + + IL DK G P+G A++ F + E Sbjct: 159 EQLRDTNLYVTNLSRSITDEQLETIFGKYGQIVQKNILRDKHTGTPRGVAFIRFNKREEA 218 Query: 466 QEAV 477 QEA+ Sbjct: 219 QEAI 222
>MRD1_ASPFU (Q4WJT7) Multiple RNA-binding domain-containing protein 1| Length = 825 Score = 40.4 bits (93), Expect = 0.003 Identities = 26/94 (27%), Positives = 47/94 (50%), Gaps = 10/94 (10%) Frame = +1 Query: 274 TSEAKEEMD--------SRSVFVGNVDYACTPEEVQQHFNSCGTVNRVTILTD-KFGQPK 426 +S +EE+D S +FV N+ Y + +++ F+ G + + + D + K Sbjct: 283 SSVEEEEVDTNIEHIRLSSRLFVRNLPYDASESDLEPVFSKFGKIEEIHVAFDTRSTTSK 342 Query: 427 GFAYVEFVEAEAIQEAVK-LSESELHGRQIKVAP 525 GFAYV+++E +A +A K L GR + + P Sbjct: 343 GFAYVQYIEPDAAVQAYKELDGKHFQGRLMHILP 376 Score = 32.0 bits (71), Expect = 1.1 Identities = 21/93 (22%), Positives = 42/93 (45%), Gaps = 2/93 (2%) Frame = +1 Query: 241 KEMQGGDPNATTSEAKEEMDSRS-VFVGNVDYACTPEEVQQHFNSCGTVNRVTILTDKFG 417 K M + AK+ R+ + + N+ + T ++V+ F + G + V + Sbjct: 680 KAMDAAEERRREDTAKKIAARRTKIIIKNLPFQATKKDVRSLFGAYGQLRSVRVPKKFDR 739 Query: 418 QPKGFAYVEFVEAEAIQEAV-KLSESELHGRQI 513 +GF + +FV A + A+ L + L GR++ Sbjct: 740 SARGFGFADFVSAREAENAMDALKNTHLLGRRL 772
>RU17_DROME (P17133) U1 small nuclear ribonucleoprotein 70 kDa (U1 snRNP 70| kDa) (snRNP70) Length = 448 Score = 40.4 bits (93), Expect = 0.003 Identities = 18/89 (20%), Positives = 49/89 (55%), Gaps = 1/89 (1%) Frame = +1 Query: 232 KVAKEMQGGDPNATTSEAKEEMDSRSVFVGNVDYACTPEEVQQHFNSCGTVNRVTILTDK 411 K+ +E+ DP + ++ R++F+ ++Y + ++++ F G + ++ ++ D+ Sbjct: 80 KLEREIALWDPTEIKNATEDPF--RTLFIARINYDTSESKLRREFEFYGPIKKIVLIHDQ 137 Query: 412 -FGQPKGFAYVEFVEAEAIQEAVKLSESE 495 G+PKG+A++E+ + A K ++ + Sbjct: 138 ESGKPKGYAFIEYEHERDMHAAYKHADGK 166
>FCA_ARATH (O04425) Flowering time control protein FCA| Length = 747 Score = 40.0 bits (92), Expect = 0.004 Identities = 19/77 (24%), Positives = 41/77 (53%), Gaps = 1/77 (1%) Frame = +1 Query: 271 TTSEAKEEMDSRSVFVGNVDYACTPEEVQQHFNSCGTVNRVTILTDK-FGQPKGFAYVEF 447 T ++ + + +FVG+V T EE++ +F G V V ++ DK GQ +G +V++ Sbjct: 109 TGTDVSDRSSTVKLFVGSVPRTATEEEIRPYFEQHGNVLEVALIKDKRTGQQQGCCFVKY 168 Query: 448 VEAEAIQEAVKLSESEL 498 ++ A++ +++ Sbjct: 169 ATSKDADRAIRALHNQI 185
>HNRPM_RAT (Q62826) Heterogeneous nuclear ribonucleoprotein M (hnRNP M) (M4| protein) Length = 689 Score = 40.0 bits (92), Expect = 0.004 Identities = 20/64 (31%), Positives = 36/64 (56%) Frame = +1 Query: 307 SVFVGNVDYACTPEEVQQHFNSCGTVNRVTILTDKFGQPKGFAYVEFVEAEAIQEAVKLS 486 +VFV N+DY +++++ F+ G V R IL DK G+ +G V F ++ +A+ + Sbjct: 164 TVFVANLDYKVGWKKLKEVFSMAGVVVRADILEDKDGKSRGIGTVTFEQSIEAVQAISMF 223 Query: 487 ESEL 498 +L Sbjct: 224 NGQL 227 Score = 34.3 bits (77), Expect = 0.22 Identities = 22/71 (30%), Positives = 36/71 (50%), Gaps = 1/71 (1%) Frame = +1 Query: 310 VFVGNVDYACTPEEVQQHFNSCGTVNRVTILTDKFGQPKGFAYVEFVEAEAIQEAVKLSE 489 +FV N+ + T + ++ FN CG V I + G+ KG V+F E + A ++ Sbjct: 614 IFVRNLPFDFTWKMLKDKFNECGHVLYADIKMEN-GKSKGCGVVKFESPEVAERACRMMN 672 Query: 490 S-ELHGRQIKV 519 +L GR+I V Sbjct: 673 GMKLSGREIDV 683
>ROA0_HUMAN (Q13151) Heterogeneous nuclear ribonucleoprotein A0 (hnRNP A0)| Length = 305 Score = 40.0 bits (92), Expect = 0.004 Identities = 20/73 (27%), Positives = 39/73 (53%), Gaps = 1/73 (1%) Frame = +1 Query: 304 RSVFVGNVDYACTPEEVQQHFNSCGTVNRVTILTDK-FGQPKGFAYVEFVEAEAIQEAVK 480 + +FVG + ++ +HF+ GTV + I+ DK G+ +GF +V F +A +A Sbjct: 98 KKLFVGGLKGDVAEGDLIEHFSQFGTVEKAEIIADKQSGKKRGFGFVYFQNHDAADKAAV 157 Query: 481 LSESELHGRQIKV 519 + + G +++V Sbjct: 158 VKFHPIQGHRVEV 170
>GRP2_SORBI (Q99070) Glycine-rich RNA-binding protein 2| Length = 168 Score = 40.0 bits (92), Expect = 0.004 Identities = 23/71 (32%), Positives = 42/71 (59%), Gaps = 2/71 (2%) Frame = +1 Query: 313 FVGNVDYACTPEEVQQHFNSCGTVNRVTILTDK-FGQPKGFAYVEFVEAEAIQEAVK-LS 486 FVG + +A E ++Q F + G V ++TD+ G+ +GF +V F +++ +A++ ++ Sbjct: 11 FVGGLAWATNNETLEQAFANFGQVIDSKVITDRETGRSRGFGFVTFSSEQSMLDAIENMN 70 Query: 487 ESELHGRQIKV 519 EL GR I V Sbjct: 71 GKELDGRNITV 81
>HNRPM_HUMAN (P52272) Heterogeneous nuclear ribonucleoprotein M (hnRNP M)| Length = 729 Score = 40.0 bits (92), Expect = 0.004 Identities = 20/64 (31%), Positives = 36/64 (56%) Frame = +1 Query: 307 SVFVGNVDYACTPEEVQQHFNSCGTVNRVTILTDKFGQPKGFAYVEFVEAEAIQEAVKLS 486 +VFV N+DY +++++ F+ G V R IL DK G+ +G V F ++ +A+ + Sbjct: 204 TVFVANLDYKVGWKKLKEVFSMAGVVVRADILEDKDGKSRGIGTVTFEQSIEAVQAISMF 263 Query: 487 ESEL 498 +L Sbjct: 264 NGQL 267 Score = 34.3 bits (77), Expect = 0.22 Identities = 22/71 (30%), Positives = 36/71 (50%), Gaps = 1/71 (1%) Frame = +1 Query: 310 VFVGNVDYACTPEEVQQHFNSCGTVNRVTILTDKFGQPKGFAYVEFVEAEAIQEAVKLSE 489 +FV N+ + T + ++ FN CG V I + G+ KG V+F E + A ++ Sbjct: 654 IFVRNLPFDFTWKMLKDKFNECGHVLYADIKMEN-GKSKGCGVVKFESPEVAERACRMMN 712 Query: 490 S-ELHGRQIKV 519 +L GR+I V Sbjct: 713 GMKLSGREIDV 723
>BOULE_DROME (Q24207) Protein boule| Length = 228 Score = 40.0 bits (92), Expect = 0.004 Identities = 24/76 (31%), Positives = 39/76 (51%), Gaps = 4/76 (5%) Frame = +1 Query: 310 VFVGNVDYACTPEEVQQHFNSCGTVNRVTILTDKFGQPKGFAYVEFVEAEAIQEAVKLSE 489 +FVG + T ++ + F++ GTV I+ D+ G KG+ +V F E QEA +L Sbjct: 35 IFVGGISGDTTEADLTRVFSAYGTVKSTKIIVDRAGVSKGYGFVTF---ETEQEAQRLQA 91 Query: 490 S----ELHGRQIKVAP 525 L R++ +AP Sbjct: 92 DGECVVLRDRKLNIAP 107
>PABPX_SCHPO (Q9P6M8) mRNA export factor crp79 (Polyadenylate-binding protein| crp79) (Poly(A)-binding protein) (PABP) (Meiotic expression up-regulated protein 5) Length = 710 Score = 40.0 bits (92), Expect = 0.004 Identities = 25/76 (32%), Positives = 41/76 (53%), Gaps = 13/76 (17%) Frame = +1 Query: 292 EMDSRSVFVGNVDYACTPEEVQQHFNSCGTVNRV-TILTDK---------FGQPKG---F 432 E +S +++VGN+D + EE+ +HF+ G V + L D F PK + Sbjct: 13 EDESSTIYVGNIDSRLSDEEIIKHFSKYGQVESIFRRLLDSFYPKEKAKPFKPPKNGVQY 72 Query: 433 AYVEFVEAEAIQEAVK 480 +V+FV AE+I+E +K Sbjct: 73 GFVKFVNAESIEEVLK 88
>MSI1H_HUMAN (O43347) RNA-binding protein Musashi homolog 1 (Musashi-1)| Length = 362 Score = 40.0 bits (92), Expect = 0.004 Identities = 20/80 (25%), Positives = 43/80 (53%), Gaps = 4/80 (5%) Frame = +1 Query: 301 SRSVFVGNVDYACTPEEVQQHFNSCGTVNRVTILTDK-FGQPKGFAYVEFVEAEAIQEAV 477 ++ +FVG + T E+V+Q+F G V+ ++ DK + +GF +V F + +++ Sbjct: 108 TKKIFVGGLSVNTTVEDVKQYFEQFGKVDDAMLMFDKTTNRHRGFGFVTFESEDIVEKVC 167 Query: 478 KLSESELHGRQI---KVAPK 528 ++ E++ + + K PK Sbjct: 168 EIHFHEINNKMVECKKAQPK 187
>NOP12_CANAL (Q5AHI7) Nucleolar protein 12| Length = 454 Score = 40.0 bits (92), Expect = 0.004 Identities = 26/84 (30%), Positives = 48/84 (57%), Gaps = 9/84 (10%) Frame = +1 Query: 298 DSRSVFVGNVDYACTPEEVQQHFNS--CGTVNRVTILTD-KFGQPKGFAYVEFVEAEAIQ 468 + R++FVGN+D+ E + ++FNS V V I+ D K KGFA V+F + ++ Sbjct: 263 NKRTIFVGNLDFEEKEETLWKYFNSKLDQDVESVRIIRDSKTNLGKGFALVQFKDTLSVN 322 Query: 469 EAVKLSESELH------GRQIKVA 522 +A+ L++ L GR+++++ Sbjct: 323 KALLLNDKPLETGTQKKGRKLRIS 346
>RO31_XENLA (P51968) Heterogeneous nuclear ribonucleoprotein A3 homolog 1| (hnRNP A3(A)) Length = 373 Score = 39.7 bits (91), Expect = 0.005 Identities = 23/95 (24%), Positives = 46/95 (48%), Gaps = 1/95 (1%) Frame = +1 Query: 250 QGGDPNATTSEAKEEMDSRSVFVGNVDYACTPEEVQQHFNSCGTVNRVTILTD-KFGQPK 426 QG DP KE R +F+G + + T + +++HF G + ++ D + + + Sbjct: 16 QGHDP-------KEPEQLRKLFIGGLSFETTDDSLREHFEQWGKLTDCVVMRDPQTKRSR 68 Query: 427 GFAYVEFVEAEAIQEAVKLSESELHGRQIKVAPKR 531 GF +V + E + ++ ++ GR ++ PKR Sbjct: 69 GFGFVTYSCVEEVDASMSARPHKVDGRVVE--PKR 101
>NUCL_MESAU (P08199) Nucleolin (Protein C23)| Length = 713 Score = 39.7 bits (91), Expect = 0.005 Identities = 20/75 (26%), Positives = 44/75 (58%), Gaps = 1/75 (1%) Frame = +1 Query: 298 DSRSVFVGNVDYACTPEEVQQHFNSCGTVNRVTILTDKFGQPKGFAYVEFVEAEAIQEAV 477 +S+++ + N+ Y+ T E +Q+ F + + ++ G+ KG+A++EF E +EA+ Sbjct: 483 ESKTLVLSNLSYSATEETLQEVFEKATFIK---VPQNQQGKSKGYAFIEFASFEDAKEAL 539 Query: 478 -KLSESELHGRQIKV 519 ++ E+ GR I++ Sbjct: 540 NSCNKMEIEGRTIRL 554 Score = 37.4 bits (85), Expect = 0.026 Identities = 20/96 (20%), Positives = 50/96 (52%) Frame = +1 Query: 232 KVAKEMQGGDPNATTSEAKEEMDSRSVFVGNVDYACTPEEVQQHFNSCGTVNRVTILTDK 411 ++ K+ + + E E ++F+GN++ + E++ + N + ++ + Sbjct: 283 EMTKQKEVPEAKKQKVEGSESTTPFNLFIGNLNPNKSVAELKVAISEPFAKNDLAVVDVR 342 Query: 412 FGQPKGFAYVEFVEAEAIQEAVKLSESELHGRQIKV 519 G + F YV+F AE +++A++L+ ++ G +IK+ Sbjct: 343 TGTNRKFGYVDFESAEDLEKALELTGLKVFGNEIKL 378 Score = 35.8 bits (81), Expect = 0.075 Identities = 31/96 (32%), Positives = 53/96 (55%), Gaps = 6/96 (6%) Frame = +1 Query: 244 EMQG--GDPNATTSEAKEEMDSRSVFVGNVDYACTPEEVQQHFNSCGTVNRVTILTDK-F 414 E+QG G PNA + +K ++FV + T E +++ F G+V R I+TD+ Sbjct: 555 ELQGPRGSPNARSQPSK------TLFVKGLSEDTTEETLKESFE--GSV-RARIVTDRET 605 Query: 415 GQPKGFAYVEF---VEAEAIQEAVKLSESELHGRQI 513 G KGF +V+F +A+A +EA + + E+ G ++ Sbjct: 606 GSSKGFGFVDFNSEEDAKAAKEA--MEDGEIDGNKV 639
>NUCL_RAT (P13383) Nucleolin (Protein C23)| Length = 712 Score = 39.7 bits (91), Expect = 0.005 Identities = 20/75 (26%), Positives = 43/75 (57%), Gaps = 1/75 (1%) Frame = +1 Query: 298 DSRSVFVGNVDYACTPEEVQQHFNSCGTVNRVTILTDKFGQPKGFAYVEFVEAEAIQEAV 477 +S+++ + N+ Y+ T E +Q+ F + + + G+ KG+A++EF E +EA+ Sbjct: 486 ESKTLVLSNLSYSATEETLQEVFEKATFIK---VPQNPHGKSKGYAFIEFASFEDAKEAL 542 Query: 478 -KLSESELHGRQIKV 519 ++ E+ GR I++ Sbjct: 543 NSCNKMEIEGRTIRL 557 Score = 37.4 bits (85), Expect = 0.026 Identities = 20/96 (20%), Positives = 49/96 (51%) Frame = +1 Query: 232 KVAKEMQGGDPNATTSEAKEEMDSRSVFVGNVDYACTPEEVQQHFNSCGTVNRVTILTDK 411 ++ K+ + + E E ++F+GN++ + E++ + N + + + Sbjct: 286 EMTKQKEAPEAKKQKIEGSEPTTPFNLFIGNLNPNKSVAELKVAISELFAKNDLAAVDVR 345 Query: 412 FGQPKGFAYVEFVEAEAIQEAVKLSESELHGRQIKV 519 G + F YV+F AE +++A++L+ ++ G +IK+ Sbjct: 346 TGTNRKFGYVDFESAEDLEKALELTGLKVFGNEIKL 381 Score = 35.8 bits (81), Expect = 0.075 Identities = 31/96 (32%), Positives = 53/96 (55%), Gaps = 6/96 (6%) Frame = +1 Query: 244 EMQG--GDPNATTSEAKEEMDSRSVFVGNVDYACTPEEVQQHFNSCGTVNRVTILTDK-F 414 E+QG G PNA + +K ++FV + T E +++ F G+V R I+TD+ Sbjct: 558 ELQGPRGSPNARSQPSK------TLFVKGLSEDTTEETLKESFE--GSV-RARIVTDRET 608 Query: 415 GQPKGFAYVEF---VEAEAIQEAVKLSESELHGRQI 513 G KGF +V+F +A+A +EA + + E+ G ++ Sbjct: 609 GSSKGFGFVDFNSEEDAKAAKEA--MEDGEIDGNKV 642
>ROC1_NICSY (Q08935) 29 kDa ribonucleoprotein A, chloroplast precursor (CP29A)| Length = 273 Score = 39.7 bits (91), Expect = 0.005 Identities = 24/95 (25%), Positives = 46/95 (48%), Gaps = 2/95 (2%) Frame = +1 Query: 241 KEMQGGDPNATTSEAKEEMDSRSVFVGNVDYACTPEEVQQHFNSCGTVNRVTILTDKF-G 417 ++++ GD E + +FVGN+ ++ + + F G V V ++ DK G Sbjct: 68 EDVEDGDDGV--EEERNFSPDLKIFVGNLPFSADSAALAELFERAGNVEMVEVIYDKLTG 125 Query: 418 QPKGFAYVEFVEAEAIQEAV-KLSESELHGRQIKV 519 + +GF +V E ++ A + + EL GR ++V Sbjct: 126 RSRGFGFVTMSSKEEVEAACQQFNGYELDGRALRV 160
>PABP3_ARATH (O64380) Polyadenylate-binding protein 3 (Poly(A)-binding protein| 3) (PABP 3) Length = 660 Score = 39.7 bits (91), Expect = 0.005 Identities = 20/72 (27%), Positives = 43/72 (59%), Gaps = 1/72 (1%) Frame = +1 Query: 307 SVFVGNVDYACTPEEVQQHFNSCGTVNRVTILTDKFGQPKGFAYVEFVEAEAIQEAV-KL 483 ++F+ N+D + + + + F+S GT+ + D G+ KG+ +V+F + E+ Q A+ KL Sbjct: 137 NIFIKNLDASIDNKALFETFSSFGTILSCKVAMDVTGRSKGYGFVQFEKEESAQAAIDKL 196 Query: 484 SESELHGRQIKV 519 + ++ +Q+ V Sbjct: 197 NGMLMNDKQVFV 208 Score = 34.3 bits (77), Expect = 0.22 Identities = 18/79 (22%), Positives = 40/79 (50%) Frame = +1 Query: 289 EEMDSRSVFVGNVDYACTPEEVQQHFNSCGTVNRVTILTDKFGQPKGFAYVEFVEAEAIQ 468 E+ ++++ N+D + E++++ F+ G V ++ + G +GF +V + E Sbjct: 327 EKSQGANLYLKNLDDSVDDEKLKEMFSEYGNVTSSKVMLNPQGMSRGFGFVAYSNPEEAL 386 Query: 469 EAVKLSESELHGRQIKVAP 525 A+ SE++G+ I P Sbjct: 387 RAL----SEMNGKMIGRKP 401
>MSI2H_MOUSE (Q920Q6) RNA-binding protein Musashi homolog 2 (Musashi-2)| Length = 346 Score = 39.7 bits (91), Expect = 0.005 Identities = 22/96 (22%), Positives = 47/96 (48%), Gaps = 4/96 (4%) Frame = +1 Query: 256 GDPNATTSEAKEEMDSRSVFVGNVDYACTPEEVQQHFNSCGTVNRVTILTD-KFGQPKGF 432 G P + S + D +F+G + + +P+ ++ +F+ G + ++ D + +GF Sbjct: 5 GSPGTSGSANDSQHDPGKMFIGGLSWQTSPDSLRDYFSKFGEIRECMVMRDPTTKRSRGF 64 Query: 433 AYVEFVEAEAIQEAVKLSESELHGRQI--KVA-PKR 531 +V F + ++ + + EL + I KVA P+R Sbjct: 65 GFVTFADPASVDKVLGQPHHELDSKTIDPKVAFPRR 100 Score = 37.7 bits (86), Expect = 0.020 Identities = 19/80 (23%), Positives = 41/80 (51%), Gaps = 4/80 (5%) Frame = +1 Query: 301 SRSVFVGNVDYACTPEEVQQHFNSCGTVNRVTILTDK-FGQPKGFAYVEFVEAEAIQEAV 477 ++ +FVG + E+V+Q+F G V ++ DK + +GF +V F + +++ Sbjct: 109 TKKIFVGGLSANTVVEDVKQYFEQFGKVEDAMLMFDKTTNRHRGFGFVTFENEDVVEKVC 168 Query: 478 KLSESELHGRQI---KVAPK 528 ++ E++ + + K PK Sbjct: 169 EIHFHEINNKMVECKKAQPK 188
>RB97D_DROME (Q02926) Ribonucleoprotein RB97D| Length = 471 Score = 39.7 bits (91), Expect = 0.005 Identities = 22/73 (30%), Positives = 40/73 (54%), Gaps = 1/73 (1%) Frame = +1 Query: 262 PNATTSEAKEEMDSRSVFVGNVDYACTPEEVQQHFNSCGTVNRVTILTDKF-GQPKGFAY 438 P + + + +FVG + E ++++F G V V +LTDK G+ +GFA+ Sbjct: 109 PRPERESRETNISVKKLFVGGLKDNHDEECLREYFLQFGNVVSVKLLTDKTTGKRRGFAF 168 Query: 439 VEFVEAEAIQEAV 477 VEF + +A+ +A+ Sbjct: 169 VEFDDYDAVDKAI 181
>RO32_XENLA (P51992) Heterogeneous nuclear ribonucleoprotein A3 homolog 2| (hnRNP A3(B)) Length = 385 Score = 39.7 bits (91), Expect = 0.005 Identities = 20/85 (23%), Positives = 43/85 (50%), Gaps = 1/85 (1%) Frame = +1 Query: 280 EAKEEMDSRSVFVGNVDYACTPEEVQQHFNSCGTVNRVTILTD-KFGQPKGFAYVEFVEA 456 E KE R +F+G + + T + +++HF G + ++ D + + +GF +V + Sbjct: 19 EPKEPEQLRKLFIGGLSFETTDDSLREHFEQWGKLTDCVVMRDPQTKRSRGFGFVTYSCV 78 Query: 457 EAIQEAVKLSESELHGRQIKVAPKR 531 E + ++ ++ GR ++ PKR Sbjct: 79 EEVDASMSARPHKVDGRVVE--PKR 101
>PABP_DROME (P21187) Polyadenylate-binding protein (Poly(A)-binding protein)| (PABP) Length = 634 Score = 39.3 bits (90), Expect = 0.007 Identities = 20/72 (27%), Positives = 40/72 (55%), Gaps = 1/72 (1%) Frame = +1 Query: 307 SVFVGNVDYACTPEEVQQHFNSCGTVNRVTILTDKFGQPKGFAYVEFVEAEAIQEAV-KL 483 +VF+ N+D A + + F++ G + + TD+ G KG+ +V F EA ++ K+ Sbjct: 91 NVFIKNLDRAIDNKAIYDTFSAFGNILSCKVATDEKGNSKGYGFVHFETEEAANTSIDKV 150 Query: 484 SESELHGRQIKV 519 + L+G+++ V Sbjct: 151 NGMLLNGKKVYV 162 Score = 35.8 bits (81), Expect = 0.075 Identities = 21/73 (28%), Positives = 38/73 (52%) Frame = +1 Query: 307 SVFVGNVDYACTPEEVQQHFNSCGTVNRVTILTDKFGQPKGFAYVEFVEAEAIQEAVKLS 486 +++V N+D + ++ F+ G + ++TD+ G+ KGF +V F A AV Sbjct: 288 NLYVKNLDDTIDDDRLRIAFSPYGNITSAKVMTDEEGRSKGFGFVCFNAASEATCAV--- 344 Query: 487 ESELHGRQIKVAP 525 +EL+GR + P Sbjct: 345 -TELNGRVVGSKP 356
>HNRPQ_RAT (Q7TP47) Heterogeneous nuclear ribonucleoprotein Q (hnRNP Q)| (hnRNP-Q) (Synaptotagmin-binding, cytoplasmic RNA-interacting protein) (Liver regeneration-related protein LRRG077) Length = 533 Score = 39.3 bits (90), Expect = 0.007 Identities = 23/78 (29%), Positives = 37/78 (47%), Gaps = 1/78 (1%) Frame = +1 Query: 253 GGDPNATTSEAKEEMDSRSVFVGNVDYACTPEEVQQHFNSCGTVNRVTILTDKF-GQPKG 429 GG P + ++ +FVG + +E+ F G + + ++ D G +G Sbjct: 55 GGPPPDSVYSGQQPSVGTEIFVGKIPRDLFEDELVPLFEKAGPIWDLRLMMDPLTGLNRG 114 Query: 430 FAYVEFVEAEAIQEAVKL 483 +A+V F EA QEAVKL Sbjct: 115 YAFVTFCTKEAAQEAVKL 132
>HNRPQ_MOUSE (Q7TMK9) Heterogeneous nuclear ribonucleoprotein Q (hnRNP Q)| (hnRNP-Q) (Synaptotagmin-binding, cytoplasmic RNA-interacting protein) (Glycine-and tyrosine-rich RNA-binding protein) (GRY-RBP) (NS1-associated protein 1) (pp68) Length = 623 Score = 39.3 bits (90), Expect = 0.007 Identities = 23/78 (29%), Positives = 37/78 (47%), Gaps = 1/78 (1%) Frame = +1 Query: 253 GGDPNATTSEAKEEMDSRSVFVGNVDYACTPEEVQQHFNSCGTVNRVTILTDKF-GQPKG 429 GG P + ++ +FVG + +E+ F G + + ++ D G +G Sbjct: 145 GGPPPDSVYSGQQPSVGTEIFVGKIPRDLFEDELVPLFEKAGPIWDLRLMMDPLTGLNRG 204 Query: 430 FAYVEFVEAEAIQEAVKL 483 +A+V F EA QEAVKL Sbjct: 205 YAFVTFCTKEAAQEAVKL 222
>HNRPQ_HUMAN (O60506) Heterogeneous nuclear ribonucleoprotein Q (hnRNP Q)| (hnRNP-Q) (Synaptotagmin-binding, cytoplasmic RNA-interacting protein) (Glycine-and tyrosine-rich RNA-binding protein) (GRY-RBP) (NS1-associated protein 1) Length = 623 Score = 39.3 bits (90), Expect = 0.007 Identities = 23/78 (29%), Positives = 37/78 (47%), Gaps = 1/78 (1%) Frame = +1 Query: 253 GGDPNATTSEAKEEMDSRSVFVGNVDYACTPEEVQQHFNSCGTVNRVTILTDKF-GQPKG 429 GG P + ++ +FVG + +E+ F G + + ++ D G +G Sbjct: 145 GGPPPDSVYSGQQPSVGTEIFVGKIPRDLFEDELVPLFEKAGPIWDLRLMMDPLTGLNRG 204 Query: 430 FAYVEFVEAEAIQEAVKL 483 +A+V F EA QEAVKL Sbjct: 205 YAFVTFCTKEAAQEAVKL 222
>RRP2_SPIOL (P82277) Plastid-specific 30S ribosomal protein 2, chloroplast| precursor (PSRP-2) Length = 260 Score = 39.3 bits (90), Expect = 0.007 Identities = 22/87 (25%), Positives = 46/87 (52%), Gaps = 2/87 (2%) Frame = +1 Query: 265 NATTSEAKEEMDSRSVFVGNVDYACTPEEVQQHFNSCGTVNRVTILTDKF-GQPKGFAYV 441 ++T S + + +R ++VGN+ +E++ G + ++ DK+ G+ + F +V Sbjct: 71 SSTASSSSDGEGARRLYVGNIPRNLNNDELRTIVEEHGAIEIAEVMYDKYSGRSRRFGFV 130 Query: 442 EFVEAEAIQEAV-KLSESELHGRQIKV 519 E + KL+++E+ GR+IKV Sbjct: 131 TMKTVEDANAVIEKLNDTEIGGRKIKV 157
>RNPC1_HUMAN (Q9H0Z9) RNA-binding region-containing protein 1 (HSRNASEB) (ssDNA| binding protein SEB4) (CLL-associated antigen KW-5) Length = 216 Score = 39.3 bits (90), Expect = 0.007 Identities = 18/71 (25%), Positives = 36/71 (50%), Gaps = 1/71 (1%) Frame = +1 Query: 310 VFVGNVDYACTPEEVQQHFNSCGTVNRVTILTDK-FGQPKGFAYVEFVEAEAIQEAVKLS 486 +FVG + Y T ++++F G + ++TD+ G+ +G+ +V + A + A K Sbjct: 13 IFVGGLPYHTTDASLRKYFEGFGDIEEAVVITDRQTGKSRGYGFVTMADRAAAERACKDP 72 Query: 487 ESELHGRQIKV 519 + GR+ V Sbjct: 73 NPIIDGRKANV 83
>RBM19_HUMAN (Q9Y4C8) Probable RNA-binding protein 19 (RNA-binding motif protein| 19) Length = 960 Score = 39.3 bits (90), Expect = 0.007 Identities = 23/84 (27%), Positives = 45/84 (53%), Gaps = 2/84 (2%) Frame = +1 Query: 280 EAKEEMDSRSVFVGNVDYACTPEEVQQHFNSCGTVNRVTILTDKFGQ-PKGFAYVEFVEA 456 E ++ +S +FV N+ Y T E++++ F+ G ++ + D + PKGFA++ F+ Sbjct: 394 EEEDLAESGRLFVRNLPYTSTEEDLEKLFSKYGPLSELHYPIDSLTKKPKGFAFITFMFP 453 Query: 457 E-AIQEAVKLSESELHGRQIKVAP 525 E A++ ++ GR + V P Sbjct: 454 EHAVKAYSEVDGQVFQGRMLHVLP 477 Score = 36.2 bits (82), Expect = 0.058 Identities = 23/85 (27%), Positives = 46/85 (54%), Gaps = 5/85 (5%) Frame = +1 Query: 280 EAKEEMDSRSVFVGNVDYACTPEEVQQHFNSCGTVNRVTILTDKFGQ----PKGFAYVEF 447 E +E + ++F+ N+++ T E++++ F+ GTV +I K GF +VE+ Sbjct: 722 EEEESLPGCTLFIKNLNFDTTEEKLKEVFSKVGTVKSCSISKKKNKAGVLLSMGFGFVEY 781 Query: 448 VEAEAIQEAVK-LSESELHGRQIKV 519 + E Q+A+K L + G +++V Sbjct: 782 RKPEQAQKALKQLQGHVVDGHKLEV 806
>MYEF2_HUMAN (Q9P2K5) Myelin expression factor 2 (MyEF-2) (MST156)| Length = 600 Score = 38.9 bits (89), Expect = 0.009 Identities = 23/72 (31%), Positives = 39/72 (54%), Gaps = 1/72 (1%) Frame = +1 Query: 307 SVFVGNVDYACTPEEVQQHFNSCGTVNRVTILTDKFGQPKGFAYVEFVEA-EAIQEAVKL 483 ++FV N+D+ +++++ F+ GTV R I DK G+ +G V F +A EA+Q Sbjct: 234 TIFVANLDFKVGWKKLKEVFSIAGTVKRADIKEDKDGKSRGMGTVTFEQAIEAVQAISMF 293 Query: 484 SESELHGRQIKV 519 + L R + V Sbjct: 294 NGQFLFDRPMHV 305 Score = 34.3 bits (77), Expect = 0.22 Identities = 23/84 (27%), Positives = 45/84 (53%), Gaps = 3/84 (3%) Frame = +1 Query: 277 SEAKEEMDSRS--VFVGNVDYACTPEEVQQHFNSCGTVNRVTILTDKFGQPKGFAYVEFV 450 S +E + S+ +FV N+ + T +++++ F+ CG V I + G+ KG V F Sbjct: 512 SGMRERIGSKGNQIFVRNLPFDLTWQKLKEKFSQCGHVMFAEIKMEN-GKSKGCGTVRFD 570 Query: 451 EAEAIQEAVKLSES-ELHGRQIKV 519 E+ ++A ++ ++ GR+I V Sbjct: 571 SPESAEKACRIMNGIKISGREIDV 594
>IF4B_HUMAN (P23588) Eukaryotic translation initiation factor 4B (eIF-4B)| Length = 611 Score = 38.9 bits (89), Expect = 0.009 Identities = 21/73 (28%), Positives = 39/73 (53%), Gaps = 2/73 (2%) Frame = +1 Query: 307 SVFVGNVDYACTPEEVQQHFNSCGTVNRVTILTDKFGQP--KGFAYVEFVEAEAIQEAVK 480 + F+GN+ Y T E +++ F ++ V + + KGF Y EF + +++ A+ Sbjct: 97 TAFLGNLPYDVTEESIKEFFRGLN-ISAVRLPREPSNPERLKGFGYAEFEDLDSLLSALS 155 Query: 481 LSESELHGRQIKV 519 L+E L R+I+V Sbjct: 156 LNEESLGNRRIRV 168
>HSH49_YEAST (Q99181) Protein HSH49| Length = 213 Score = 38.9 bits (89), Expect = 0.009 Identities = 25/74 (33%), Positives = 40/74 (54%), Gaps = 3/74 (4%) Frame = +1 Query: 307 SVFVGNVDYACTPEEVQQHFNSCGTVNRVTILTDKFGQP-KGFAYVEFVEAEAIQEAVKL 483 +V+VGN+D T E++ + F V R+ DK Q +G+A++EF Q A+K+ Sbjct: 10 TVYVGNIDPRITKEQLYELFIQINPVLRIKYPKDKVLQAYQGYAFIEFYNQGDAQYAIKI 69 Query: 484 SES--ELHGRQIKV 519 + L+ R IKV Sbjct: 70 MNNTVRLYDRLIKV 83
>MYEF2_MOUSE (Q8C854) Myelin expression factor 2 (MyEF-2) (MEF-2)| Length = 591 Score = 38.9 bits (89), Expect = 0.009 Identities = 23/72 (31%), Positives = 39/72 (54%), Gaps = 1/72 (1%) Frame = +1 Query: 307 SVFVGNVDYACTPEEVQQHFNSCGTVNRVTILTDKFGQPKGFAYVEFVEA-EAIQEAVKL 483 ++FV N+D+ +++++ F+ GTV R I DK G+ +G V F +A EA+Q Sbjct: 225 TIFVANLDFKVGWKKLKEVFSIAGTVKRADIKEDKDGKSRGMGTVTFEQAIEAVQAISMF 284 Query: 484 SESELHGRQIKV 519 + L R + V Sbjct: 285 NGQFLFDRPMHV 296 Score = 36.2 bits (82), Expect = 0.058 Identities = 21/71 (29%), Positives = 40/71 (56%), Gaps = 1/71 (1%) Frame = +1 Query: 310 VFVGNVDYACTPEEVQQHFNSCGTVNRVTILTDKFGQPKGFAYVEFVEAEAIQEAVKLSE 489 +FV N+ + T +++++ F+ CG V I + G+ KG V F AE+ ++A ++ Sbjct: 516 IFVRNLPFDLTWQKLKEKFSQCGHVMFAEIKMEN-GKSKGCGTVRFESAESAEKACRIMN 574 Query: 490 S-ELHGRQIKV 519 ++ GR+I V Sbjct: 575 GIKISGREIDV 585
>RSP3_CAEEL (Q9NEW6) Probable splicing factor, arginine/serine-rich 3 (CeSF2)| (CeSF2/ASF) Length = 258 Score = 38.9 bits (89), Expect = 0.009 Identities = 24/75 (32%), Positives = 41/75 (54%), Gaps = 1/75 (1%) Frame = +1 Query: 298 DSRSVFVGNVDYACTPEEVQQHFNSCGTVNRVTILTDKFGQPKGFAYVEFVEAEAIQEAV 477 + + V+VGN+ +EV+ F+ G + V I K G+ FA+VEF + ++AV Sbjct: 7 EDQKVYVGNLPGDVREKEVEDIFHKYGRIKYVDI---KSGRGPAFAFVEFEDHRDAEDAV 63 Query: 478 KLSES-ELHGRQIKV 519 + + E GR+I+V Sbjct: 64 RARDGYEFDGRRIRV 78
>RBY1A_HUMAN (Q15414) RNA-binding motif protein, Y chromosome, family 1 member| A1 (RNA-binding motif protein 1) Length = 496 Score = 38.9 bits (89), Expect = 0.009 Identities = 19/71 (26%), Positives = 39/71 (54%), Gaps = 1/71 (1%) Frame = +1 Query: 310 VFVGNVDYACTPEEVQQHFNSCGTVNRVTILTDKFGQPKGFAYVEFVE-AEAIQEAVKLS 486 +F+G ++ + ++ F G ++ V ++ D+ + +GFA++ F A+A A ++ Sbjct: 10 LFIGGLNRETNEKMLKAVFGKHGPISEVLLIKDRTSKSRGFAFITFENPADAKNAAKDMN 69 Query: 487 ESELHGRQIKV 519 LHG+ IKV Sbjct: 70 GKSLHGKAIKV 80
>RNPC1_MOUSE (Q62176) RNA-binding region-containing protein 1 (ssDNA binding| protein SEB4) Length = 237 Score = 38.9 bits (89), Expect = 0.009 Identities = 18/80 (22%), Positives = 39/80 (48%), Gaps = 1/80 (1%) Frame = +1 Query: 283 AKEEMDSRSVFVGNVDYACTPEEVQQHFNSCGTVNRVTILTDK-FGQPKGFAYVEFVEAE 459 ++++ +FVG + Y T ++++F G + ++TD+ G+ +G+ +V + Sbjct: 25 SRKDTTFTKIFVGGLPYHTTDASLRKYFEGFGDIEEAVVITDRQTGKSRGYGFVTMADRA 84 Query: 460 AIQEAVKLSESELHGRQIKV 519 A A K + GR+ V Sbjct: 85 AADRACKDPNPIIDGRKANV 104
>GRPA_MAIZE (P10979) Glycine-rich RNA-binding, abscisic acid-inducible protein| Length = 157 Score = 38.9 bits (89), Expect = 0.009 Identities = 22/71 (30%), Positives = 41/71 (57%), Gaps = 2/71 (2%) Frame = +1 Query: 313 FVGNVDYACTPEEVQQHFNSCGTVNRVTILTDK-FGQPKGFAYVEFVEAEAIQEAVK-LS 486 FVG + +A + E ++ F S G + ++TD+ G+ +GF +V F ++ +A++ ++ Sbjct: 11 FVGGLAWATSNESLENAFASYGEILDSKVITDRETGRSRGFGFVTFSSENSMLDAIENMN 70 Query: 487 ESELHGRQIKV 519 EL GR I V Sbjct: 71 GKELDGRNITV 81
>SCE3_SCHPO (O14369) Probable RNA-binding protein sce3| Length = 388 Score = 38.5 bits (88), Expect = 0.012 Identities = 23/70 (32%), Positives = 38/70 (54%), Gaps = 2/70 (2%) Frame = +1 Query: 316 VGNVDYACTPEEVQQHFNSCGTVNRVTI--LTDKFGQPKGFAYVEFVEAEAIQEAVKLSE 489 VGN+ + T ++ F T R+ I LT++ +GF YVEF A+ + A+ LS Sbjct: 98 VGNLSFDLTENDLGDFFGEGVTSIRLVIDPLTER---SRGFGYVEFETADTLSAALALSG 154 Query: 490 SELHGRQIKV 519 +L GR +++ Sbjct: 155 EDLMGRPVRI 164
>TCG1_SCHPO (Q9HEQ9) Single-stranded TG1-3 DNA-binding protein| Length = 348 Score = 38.5 bits (88), Expect = 0.012 Identities = 26/87 (29%), Positives = 43/87 (49%), Gaps = 6/87 (6%) Frame = +1 Query: 289 EEMDSRSVFVGNVDYACTPEEVQQHFNSCGTVNRVTILTDKFGQ-----PKGFAYVEFVE 453 ++ D VFVG + + E++ F + GTV +VTI + + P G A+V F Sbjct: 39 QQADDFRVFVGRLSTSTKKSEIRSLFETVGTVRKVTIPFRRVRRGTRLVPSGIAFVTFNN 98 Query: 454 AEAIQEAVK-LSESELHGRQIKVAPKR 531 E + +A++ L+ L R+I V R Sbjct: 99 QEDVDKAIETLNGKTLDDREIVVQKAR 125
>SXL_CERCA (O61374) Sex-lethal homolog (CCSXL)| Length = 348 Score = 38.5 bits (88), Expect = 0.012 Identities = 20/64 (31%), Positives = 35/64 (54%), Gaps = 1/64 (1%) Frame = +1 Query: 289 EEMDSRSVFVGNVDYACTPEEVQQHFNSCGTVNRVTILTDKF-GQPKGFAYVEFVEAEAI 465 E + +++V N+ T +++ F G + + IL DK G+P+G A+V F + E Sbjct: 191 ESIKDTNLYVTNLPRTITDDQLDTIFGKYGMIVQKNILRDKLTGKPRGVAFVRFNKREEA 250 Query: 466 QEAV 477 QEA+ Sbjct: 251 QEAI 254 Score = 30.8 bits (68), Expect = 2.4 Identities = 20/66 (30%), Positives = 34/66 (51%), Gaps = 2/66 (3%) Frame = +1 Query: 340 TPEEVQQHFNSCGTVNRVTILTD-KFGQPKGFAYVEFVEAEAIQEAVK-LSESELHGRQI 513 T E+ F + G +N I+ D K G G+A+V+F Q A+K L+ + +++ Sbjct: 122 TDRELYALFRTIGPINTCRIMRDYKTGYSFGYAFVDFAAETDSQRAIKSLNGITVRNKRL 181 Query: 514 KVAPKR 531 KV+ R Sbjct: 182 KVSYAR 187
>ROC1_NICPL (P49313) 30 kDa ribonucleoprotein, chloroplast precursor (CP-RBP30)| Length = 279 Score = 38.5 bits (88), Expect = 0.012 Identities = 24/95 (25%), Positives = 46/95 (48%), Gaps = 2/95 (2%) Frame = +1 Query: 241 KEMQGGDPNATTSEAKEEMDSRSVFVGNVDYACTPEEVQQHFNSCGTVNRVTILTDKF-G 417 ++++ GD E + +FVGN+ ++ + + F G V V ++ DK G Sbjct: 68 EDVEDGDEGV--EEERNFSPDLKIFVGNLLFSADSAALAELFERAGNVEMVEVIYDKLTG 125 Query: 418 QPKGFAYVEFVEAEAIQEAV-KLSESELHGRQIKV 519 + +GF +V E ++ A + + EL GR ++V Sbjct: 126 RSRGFGFVTMSSKEEVEAACQQFNGYELDGRALRV 160
>MK67I_XENLA (Q7SYS2) MKI67 FHA domain-interacting nucleolar phosphoprotein-like| Length = 278 Score = 38.5 bits (88), Expect = 0.012 Identities = 16/47 (34%), Positives = 31/47 (65%), Gaps = 1/47 (2%) Frame = +1 Query: 310 VFVGNVDYACTPEEVQQHFNSCGTVNRVTI-LTDKFGQPKGFAYVEF 447 +++G++ + ++Q++FN GTV R+ + + K G KG+AYVE+ Sbjct: 43 IYIGHIPKSLIEPQLQEYFNQFGTVTRLRLSRSKKTGNSKGYAYVEY 89
>RO21_XENLA (P51989) Heterogeneous nuclear ribonucleoprotein A2 homolog 1| (hnRNP A2(A)) Length = 346 Score = 38.5 bits (88), Expect = 0.012 Identities = 18/73 (24%), Positives = 39/73 (53%), Gaps = 1/73 (1%) Frame = +1 Query: 304 RSVFVGNVDYACTPEEVQQHFNSCGTVNRVTILTDK-FGQPKGFAYVEFVEAEAIQEAVK 480 + +FVG + ++++F G ++ + I+TDK G+ +GFA+V F + + + + V Sbjct: 100 KKLFVGGIKEDTEEHHLREYFEEYGKIDSIEIITDKQSGKKRGFAFVTFDDHDPVDKIVL 159 Query: 481 LSESELHGRQIKV 519 ++G +V Sbjct: 160 QKYHTINGHNAEV 172 Score = 36.2 bits (82), Expect = 0.058 Identities = 19/83 (22%), Positives = 40/83 (48%), Gaps = 1/83 (1%) Frame = +1 Query: 286 KEEMDSRSVFVGNVDYACTPEEVQQHFNSCGTVNRVTILTDKFG-QPKGFAYVEFVEAEA 462 +E+ R +F+G + + T E ++ ++ GT+ ++ D + +GF +V F Sbjct: 3 REKEQFRKLFIGGLSFETTEESLRNYYEQWGTLTDCVVMRDPASKRSRGFGFVTFSCMNE 62 Query: 463 IQEAVKLSESELHGRQIKVAPKR 531 + A+ + GR ++ PKR Sbjct: 63 VDAAMATRPHTIDGRVVE--PKR 83
>RNA15_YEAST (P25299) mRNA 3'-end-processing protein RNA15| Length = 296 Score = 38.5 bits (88), Expect = 0.012 Identities = 23/74 (31%), Positives = 45/74 (60%), Gaps = 2/74 (2%) Frame = +1 Query: 301 SRSVFVGNVDYACTPEEVQQHFNSCGTVNRVTILTD-KFGQPKGFAYVEFVEAEAIQEAV 477 SR V++G++ Y T E++ ++ G V + ++ D + G+ KG+A++EF + E+ AV Sbjct: 17 SRVVYLGSIPYDQTEEQILDLCSNVGPVINLKMMFDPQTGRSKGYAFIEFRDLESSASAV 76 Query: 478 K-LSESELHGRQIK 516 + L+ +L R +K Sbjct: 77 RNLNGYQLGSRFLK 90
>PABPB_XENLA (Q6IP09) Polyadenylate-binding protein 1-B (Poly(A)-binding protein| 1-B) (Cytoplasmic poly(A)-binding protein 1-B) (PABP-B) (PABP 1-B) (xPABP1-B) Length = 633 Score = 38.5 bits (88), Expect = 0.012 Identities = 21/72 (29%), Positives = 38/72 (52%), Gaps = 1/72 (1%) Frame = +1 Query: 307 SVFVGNVDYACTPEEVQQHFNSCGTVNRVTILTDKFGQPKGFAYVEFVEAEAIQEAV-KL 483 +V++ N E +++ F G V ++TD G+ +GF +V F E Q+AV + Sbjct: 192 NVYIKNFGEDMDDERLKEWFGQYGAALSVKVMTDDHGKSRGFGFVSFERHEDAQKAVDDM 251 Query: 484 SESELHGRQIKV 519 + +L+G+ I V Sbjct: 252 NGKDLNGKAIFV 263
>YHC4_YEAST (P38741) Hypothetical 80.1 kDa protein in SNF6-SPO11 intergenic| region Length = 713 Score = 38.1 bits (87), Expect = 0.015 Identities = 22/69 (31%), Positives = 38/69 (55%) Frame = +1 Query: 295 MDSRSVFVGNVDYACTPEEVQQHFNSCGTVNRVTILTDKFGQPKGFAYVEFVEAEAIQEA 474 +D RS+FVG +D T EE+ + F++ G + + ++ F FA++++ EA A Sbjct: 343 IDKRSIFVGQLDKETTREELNRRFSTHGKIQDINLI---FKPTNIFAFIKYETEEAAAAA 399 Query: 475 VKLSESELH 501 + ESE H Sbjct: 400 L---ESENH 405
>MODU_DROME (P13469) DNA-binding protein modulo| Length = 542 Score = 38.1 bits (87), Expect = 0.015 Identities = 32/100 (32%), Positives = 51/100 (51%), Gaps = 2/100 (2%) Frame = +1 Query: 226 QAKVAKEMQGGDPNATTSEA--KEEMDSRSVFVGNVDYACTPEEVQQHFNSCGTVNRVTI 399 QAK K + GD + S+ KEE + R+V VG + T ++++ F V VTI Sbjct: 231 QAK-PKALTLGDNVLSVSQPRNKEENNERTVVVGLIGPNITKDDLKTFFEKVAPVEAVTI 289 Query: 400 LTDKFGQPKGFAYVEFVEAEAIQEAVKLSESELHGRQIKV 519 +++ P+ A+V + I +A+KL +EL R I V Sbjct: 290 SSNRL-MPR--AFVRLASVDDIPKALKLHSTELFSRFITV 326
>RSP7_CAEEL (O01159) Probable splicing factor, arginine/serine-rich 7 (p54)| Length = 452 Score = 38.1 bits (87), Expect = 0.015 Identities = 27/89 (30%), Positives = 41/89 (46%), Gaps = 1/89 (1%) Frame = +1 Query: 268 ATTSEAKEEMDSRSVFVGNVDYACTPEEVQQHFNSC-GTVNRVTILTDKFGQPKGFAYVE 444 A T AK E R+V+VGN+ EV + FN G V + + P +AYVE Sbjct: 151 ADTDSAKVEEIRRTVYVGNLPKGVDGNEVLELFNMYFGEVMYARMASGPDALPCAYAYVE 210 Query: 445 FVEAEAIQEAVKLSESELHGRQIKVAPKR 531 F + ++ A++ E R +K+ R Sbjct: 211 FSQQASVCNALQNDGFEFKERPLKIQHSR 239
>SXL_DROSU (Q24668) Protein sex-lethal| Length = 354 Score = 38.1 bits (87), Expect = 0.015 Identities = 19/64 (29%), Positives = 36/64 (56%), Gaps = 1/64 (1%) Frame = +1 Query: 289 EEMDSRSVFVGNVDYACTPEEVQQHFNSCGTVNRVTILTDKF-GQPKGFAYVEFVEAEAI 465 E + +++V N+ T +++ F G++ + IL DK G+P+G A+V + + E Sbjct: 208 ESIKDTNLYVTNLPRTITDDQLDTIFGKYGSIVQKNILRDKLTGRPRGVAFVRYNKREEA 267 Query: 466 QEAV 477 QEA+ Sbjct: 268 QEAI 271 Score = 31.2 bits (69), Expect = 1.9 Identities = 21/83 (25%), Positives = 40/83 (48%), Gaps = 2/83 (2%) Frame = +1 Query: 289 EEMDSRSVFVGNVDYACTPEEVQQHFNSCGTVNRVTILTD-KFGQPKGFAYVEFVEAEAI 465 + + ++ V + T E+ F + G +N I+ D K G G+A+V+F Sbjct: 122 QRSSNTNLIVNYLPQDMTDRELYALFRAIGPINTCRIMRDYKTGYSFGYAFVDFTSEMDS 181 Query: 466 QEAVK-LSESELHGRQIKVAPKR 531 Q A+K L+ + +++KV+ R Sbjct: 182 QRAIKVLNGITVRNKRLKVSYAR 204
>SXL_DROME (P19339) Protein sex-lethal| Length = 354 Score = 38.1 bits (87), Expect = 0.015 Identities = 19/64 (29%), Positives = 36/64 (56%), Gaps = 1/64 (1%) Frame = +1 Query: 289 EEMDSRSVFVGNVDYACTPEEVQQHFNSCGTVNRVTILTDKF-GQPKGFAYVEFVEAEAI 465 E + +++V N+ T +++ F G++ + IL DK G+P+G A+V + + E Sbjct: 206 ESIKDTNLYVTNLPRTITDDQLDTIFGKYGSIVQKNILRDKLTGRPRGVAFVRYNKREEA 265 Query: 466 QEAV 477 QEA+ Sbjct: 266 QEAI 269 Score = 30.8 bits (68), Expect = 2.4 Identities = 20/66 (30%), Positives = 34/66 (51%), Gaps = 2/66 (3%) Frame = +1 Query: 340 TPEEVQQHFNSCGTVNRVTILTD-KFGQPKGFAYVEFVEAEAIQEAVK-LSESELHGRQI 513 T E+ F + G +N I+ D K G G+A+V+F Q A+K L+ + +++ Sbjct: 137 TDRELYALFRAIGPINTCRIMRDYKTGYSFGYAFVDFTSEMDSQRAIKVLNGITVRNKRL 196 Query: 514 KVAPKR 531 KV+ R Sbjct: 197 KVSYAR 202
>PABPA_XENLA (P20965) Polyadenylate-binding protein 1-A (Poly(A)-binding protein| 1-A) (Cytoplasmic poly(A)-binding protein 1-A) (PABP-A) (PABP 1-A) (xPABP1-A) Length = 633 Score = 37.7 bits (86), Expect = 0.020 Identities = 20/72 (27%), Positives = 39/72 (54%), Gaps = 1/72 (1%) Frame = +1 Query: 307 SVFVGNVDYACTPEEVQQHFNSCGTVNRVTILTDKFGQPKGFAYVEFVEAEAIQEAV-KL 483 +V++ N E +++ F G V ++TD G+ KGF +V F E Q+AV ++ Sbjct: 192 NVYIKNFGDDMNDERLKEMFGKYGPALSVKVMTDDNGKSKGFGFVSFERHEDAQKAVDEM 251 Query: 484 SESELHGRQIKV 519 + +++G+ + V Sbjct: 252 NGKDMNGKSMFV 263
>MSI2H_HUMAN (Q96DH6) RNA-binding protein Musashi homolog 2 (Musashi-2)| Length = 328 Score = 37.7 bits (86), Expect = 0.020 Identities = 19/80 (23%), Positives = 41/80 (51%), Gaps = 4/80 (5%) Frame = +1 Query: 301 SRSVFVGNVDYACTPEEVQQHFNSCGTVNRVTILTDK-FGQPKGFAYVEFVEAEAIQEAV 477 ++ +FVG + E+V+Q+F G V ++ DK + +GF +V F + +++ Sbjct: 109 TKKIFVGGLSANTVVEDVKQYFEQFGKVEDAMLMFDKTTNRHRGFGFVTFENEDVVEKVC 168 Query: 478 KLSESELHGRQI---KVAPK 528 ++ E++ + + K PK Sbjct: 169 EIHFHEINNKMVECKKAQPK 188
>FUSIP_MOUSE (Q9R0U0) FUS-interacting serine-arginine-rich protein 1| (TLS-associated protein with Ser-Arg repeats) (TLS-associated protein with SR repeats) (TASR) (TLS-associated serine-arginine protein) (TLS-associated SR protein) (Neural-specific SR pro Length = 262 Score = 37.4 bits (85), Expect = 0.026 Identities = 23/73 (31%), Positives = 41/73 (56%), Gaps = 2/73 (2%) Frame = +1 Query: 307 SVFVGNVDYACTPEEVQQHFNSCGTVNRVTILTDKFGQ-PKGFAYVEFVEAEAIQEAV-K 480 S+FV NV E++++ F G + V + D + + P+GFAYV+F + ++A+ Sbjct: 11 SLFVRNVADDTRSEDLRREFGRYGPIVDVYVPLDFYTRRPRGFAYVQFEDVRDAEDALHN 70 Query: 481 LSESELHGRQIKV 519 L + GRQI++ Sbjct: 71 LDRKWICGRQIEI 83
>FUSIP_HUMAN (O75494) FUS-interacting serine-arginine-rich protein 1| (TLS-associated protein with Ser-Arg repeats) (TLS-associated protein with SR repeats) (TASR) (TLS-associated serine-arginine protein) (TLS-associated SR protein) (40 kDa SR-repressor pr Length = 262 Score = 37.4 bits (85), Expect = 0.026 Identities = 23/73 (31%), Positives = 41/73 (56%), Gaps = 2/73 (2%) Frame = +1 Query: 307 SVFVGNVDYACTPEEVQQHFNSCGTVNRVTILTDKFGQ-PKGFAYVEFVEAEAIQEAV-K 480 S+FV NV E++++ F G + V + D + + P+GFAYV+F + ++A+ Sbjct: 11 SLFVRNVADDTRSEDLRREFGRYGPIVDVYVPLDFYTRRPRGFAYVQFEDVRDAEDALHN 70 Query: 481 LSESELHGRQIKV 519 L + GRQI++ Sbjct: 71 LDRKWICGRQIEI 83
>RX21_DROME (Q24491) RNA-binding protein Rsf1 (RNA-binding protein Rox21)| Length = 197 Score = 37.4 bits (85), Expect = 0.026 Identities = 24/71 (33%), Positives = 39/71 (54%), Gaps = 1/71 (1%) Frame = +1 Query: 310 VFVGNVDYACTPEEVQQHFNSCGTVNRVTILTDKFGQPKGFAYVEFVEAEAIQEAVK-LS 486 V+VGN+ ++++ F G +N V I + P GFA+VEF + ++A L+ Sbjct: 9 VYVGNLTDKVKKDDLEGEFTKYGKLNSVWIAFN----PPGFAFVEFEHRDDAEKACDILN 64 Query: 487 ESELHGRQIKV 519 SEL G Q++V Sbjct: 65 GSELLGSQLRV 75
>IF4B_MOUSE (Q8BGD9) Eukaryotic translation initiation factor 4B (eIF-4B)| Length = 611 Score = 37.4 bits (85), Expect = 0.026 Identities = 20/72 (27%), Positives = 37/72 (51%), Gaps = 1/72 (1%) Frame = +1 Query: 307 SVFVGNVDYACTPEEVQQHFNSCG-TVNRVTILTDKFGQPKGFAYVEFVEAEAIQEAVKL 483 + F+GN+ Y T + ++ F + R+ + KGF Y EF + +++ A+ L Sbjct: 97 TAFLGNLPYDVTEDSIKDFFRGLNISAVRLPREPSNPDRLKGFGYAEFEDLDSLLSALSL 156 Query: 484 SESELHGRQIKV 519 +E L R+I+V Sbjct: 157 NEESLGNRRIRV 168
>RBM10_HUMAN (P98175) RNA-binding protein 10 (RNA-binding motif protein 10)| (DXS8237E) Length = 929 Score = 37.4 bits (85), Expect = 0.026 Identities = 27/90 (30%), Positives = 44/90 (48%), Gaps = 2/90 (2%) Frame = +1 Query: 250 QGGDPNATTSEAKEEMDSRSVFVGNVDYACTPEEVQQHFNSCGTVNR-VTILTDKF-GQP 423 QG + E +EE S V + + A T ++++ S G R V ++ +K GQ Sbjct: 111 QGEEEEEEEDEEEEEKASNIVMLRMLPQAATEDDIRGQLQSHGVQAREVRLMRNKSSGQS 170 Query: 424 KGFAYVEFVEAEAIQEAVKLSESELHGRQI 513 +GFA+VEF +Q+A + E+ H I Sbjct: 171 RGFAFVEF---SHLQDATRWMEANQHSLNI 197
>NOP12_DEBHA (Q6BTS9) Nucleolar protein 12| Length = 462 Score = 37.4 bits (85), Expect = 0.026 Identities = 21/70 (30%), Positives = 41/70 (58%), Gaps = 3/70 (4%) Frame = +1 Query: 298 DSRSVFVGNVDYACTPEEVQQHFNS--CGTVNRVTILTD-KFGQPKGFAYVEFVEAEAIQ 468 + R++FVGN+D+ E + ++FNS V V ++ D K KGFA V+F + ++ Sbjct: 264 NKRTIFVGNLDFEEKEETLWRYFNSKTDNDVESVRVIRDAKTNVGKGFALVQFKDTLSVN 323 Query: 469 EAVKLSESEL 498 +++ L++ + Sbjct: 324 KSLLLNDKPM 333
>RB27C_DROME (P48809) Heterogeneous nuclear ribonucleoprotein 27C (Hrb27-C)| (hnRNP 48) (HRP48.1) Length = 421 Score = 37.4 bits (85), Expect = 0.026 Identities = 20/86 (23%), Positives = 42/86 (48%), Gaps = 1/86 (1%) Frame = +1 Query: 265 NATTSEAKEEMDSRSVFVGNVDYACTPEEVQQHFNSCGTVNRVTILTDKFGQP-KGFAYV 441 N T + ++ VF+G + T +++ FN G V V I+ D+ + +GF ++ Sbjct: 83 NPRTLQKPKKGGGYKVFLGGLPSNVTETDLRTFFNRYGKVTEVVIMYDQEKKKSRGFGFL 142 Query: 442 EFVEAEAIQEAVKLSESELHGRQIKV 519 F E +++ L+G+Q+++ Sbjct: 143 SFEEESSVEHVTNERYINLNGKQVEI 168
>IST3_YEAST (P40565) U2 snRNP component IST3 (U2 snRNP protein SNU17)| (Increased sodium tolerance protein 3) Length = 148 Score = 37.4 bits (85), Expect = 0.026 Identities = 25/95 (26%), Positives = 50/95 (52%), Gaps = 2/95 (2%) Frame = +1 Query: 241 KEMQGGDPNATTSEAKEEMDSRSVFVGNVDYACTPEEVQQHFNSCGTVNRVTILTDK-FG 417 KE+Q G + S E D+ +++GN++ T ++ F+ G V + D+ G Sbjct: 10 KELQSGILSPHQSWHNEYKDNAYIYIGNLNRELTEGDILTVFSEYGVPVDVILSRDENTG 69 Query: 418 QPKGFAYVEFVEAEAIQEAV-KLSESELHGRQIKV 519 + +GFAY+++ + + AV L+ ++ GR +K+ Sbjct: 70 ESQGFAYLKYEDQRSTILAVDNLNGFKIGGRALKI 104
>RBM4_RABIT (Q9BDY9) RNA-binding protein 4 (RNA-binding motif protein 4) (Lark| homolog) Length = 359 Score = 37.0 bits (84), Expect = 0.034 Identities = 25/93 (26%), Positives = 46/93 (49%), Gaps = 1/93 (1%) Frame = +1 Query: 244 EMQGGDPNATTSEAKEEMDSRSVFVGNVDYACTPEEVQQHFNSCGTVNRVTILTDKFGQP 423 ++ G + N S+ K + ++ + VGN+ CT +E++ F G V I+ D Sbjct: 59 KLHGVNINVEASKNKSKASTK-LHVGNISPTCTNQELRAKFEEYGPVIECDIVKD----- 112 Query: 424 KGFAYVEFVEAEAIQEAVK-LSESELHGRQIKV 519 +A+V AE EA++ L +E G+++ V Sbjct: 113 --YAFVHMERAEDAVEAIRGLDNTEFQGKRMHV 143
>RBM4B_HUMAN (Q9BQ04) RNA-binding protein 4B (RNA-binding motif protein 4B)| (RNA-binding protein 30) (RNA-binding motif protein 30) Length = 359 Score = 37.0 bits (84), Expect = 0.034 Identities = 25/93 (26%), Positives = 46/93 (49%), Gaps = 1/93 (1%) Frame = +1 Query: 244 EMQGGDPNATTSEAKEEMDSRSVFVGNVDYACTPEEVQQHFNSCGTVNRVTILTDKFGQP 423 ++ G + N S+ K + ++ + VGN+ CT +E++ F G V I+ D Sbjct: 59 KLHGVNINVEASKNKSKASTK-LHVGNISPTCTNQELRAKFEEYGPVIECDIVKD----- 112 Query: 424 KGFAYVEFVEAEAIQEAVK-LSESELHGRQIKV 519 +A+V AE EA++ L +E G+++ V Sbjct: 113 --YAFVHMERAEDAVEAIRGLDNTEFQGKRMHV 143
>RBM28_MOUSE (Q8CGC6) RNA-binding protein 28 (RNA-binding motif protein 28)| Length = 749 Score = 37.0 bits (84), Expect = 0.034 Identities = 22/81 (27%), Positives = 41/81 (50%), Gaps = 1/81 (1%) Frame = +1 Query: 280 EAKEEMDSRSVFVGNVDYACTPEEVQQHFNSCGTVNRVTILTDKFGQPKGFAYVEFVEAE 459 +AK + + N+ + C+ ++++ F GTV V I G+ +GFA+V+F Sbjct: 105 KAKVADKKARLIIRNLSFKCSEDDLKAVFTHYGTVLEVNIPKKPDGKMRGFAFVQFKNLL 164 Query: 460 AIQEAVK-LSESELHGRQIKV 519 +A+K + E+ GR + V Sbjct: 165 EAGKALKGANMKEIKGRTVAV 185 Score = 35.4 bits (80), Expect = 0.098 Identities = 17/59 (28%), Positives = 35/59 (59%), Gaps = 1/59 (1%) Frame = +1 Query: 307 SVFVGNVDYACTPEEVQQHFNSCGTVNRVTILTDKFGQP-KGFAYVEFVEAEAIQEAVK 480 ++FVG + + +++++ F+ G V + ++T+K + +GF YV F E +Q A+K Sbjct: 4 TLFVGRLPPSARSDQLEELFSQVGPVKQCFVVTEKGSKACRGFGYVTFSMLEDVQRALK 62
>RBM14_PONPY (Q5RC41) RNA-binding protein 14 (RNA-binding motif protein 14)| Length = 669 Score = 37.0 bits (84), Expect = 0.034 Identities = 25/92 (27%), Positives = 44/92 (47%) Frame = +1 Query: 244 EMQGGDPNATTSEAKEEMDSRSVFVGNVDYACTPEEVQQHFNSCGTVNRVTILTDKFGQP 423 E++ G +++ +FVGNV ACT +E++ F G V ++ D Sbjct: 59 ELRPGRALVVEMSRPRPLNTWKIFVGNVSAACTSQELRSLFERRGRVIECDVVKD----- 113 Query: 424 KGFAYVEFVEAEAIQEAVKLSESELHGRQIKV 519 F ++E EA+A +L+ E+ G++I V Sbjct: 114 YAFVHME-KEADAKAAIAQLNGKEVKGKRINV 144
>RBM14_MOUSE (Q8C2Q3) RNA-binding protein 14 (RNA-binding motif protein 14)| Length = 669 Score = 37.0 bits (84), Expect = 0.034 Identities = 25/92 (27%), Positives = 44/92 (47%) Frame = +1 Query: 244 EMQGGDPNATTSEAKEEMDSRSVFVGNVDYACTPEEVQQHFNSCGTVNRVTILTDKFGQP 423 E++ G +++ +FVGNV ACT +E++ F G V ++ D Sbjct: 59 ELRPGRALVVEMSRPRPLNTWKIFVGNVSAACTSQELRSLFERRGRVIECDVVKD----- 113 Query: 424 KGFAYVEFVEAEAIQEAVKLSESELHGRQIKV 519 F ++E EA+A +L+ E+ G++I V Sbjct: 114 YAFVHME-KEADAKAAIAQLNGKEVKGKRINV 144
>RBM14_HUMAN (Q96PK6) RNA-binding protein 14 (RNA-binding motif protein 14)| (RRM-containing coactivator activator/modulator) (Synaptotagmin-interacting protein) (SYT-interacting protein) Length = 669 Score = 37.0 bits (84), Expect = 0.034 Identities = 25/92 (27%), Positives = 44/92 (47%) Frame = +1 Query: 244 EMQGGDPNATTSEAKEEMDSRSVFVGNVDYACTPEEVQQHFNSCGTVNRVTILTDKFGQP 423 E++ G +++ +FVGNV ACT +E++ F G V ++ D Sbjct: 59 ELRPGRALVVEMSRPRPLNTWKIFVGNVSAACTSQELRSLFERRGRVIECDVVKD----- 113 Query: 424 KGFAYVEFVEAEAIQEAVKLSESELHGRQIKV 519 F ++E EA+A +L+ E+ G++I V Sbjct: 114 YAFVHME-KEADAKAAIAQLNGKEVKGKRINV 144
>RBM14_BOVIN (Q5EA36) RNA-binding protein 14 (RNA-binding motif protein 14)| Length = 669 Score = 37.0 bits (84), Expect = 0.034 Identities = 25/92 (27%), Positives = 44/92 (47%) Frame = +1 Query: 244 EMQGGDPNATTSEAKEEMDSRSVFVGNVDYACTPEEVQQHFNSCGTVNRVTILTDKFGQP 423 E++ G +++ +FVGNV ACT +E++ F G V ++ D Sbjct: 59 ELRPGRALVVEMSRPRPLNTWKIFVGNVSAACTSQELRSLFERRGRVIECDVVKD----- 113 Query: 424 KGFAYVEFVEAEAIQEAVKLSESELHGRQIKV 519 F ++E EA+A +L+ E+ G++I V Sbjct: 114 YAFVHME-KEADAKAAIAQLNGKEVKGKRINV 144
>MK67I_XENTR (Q6GL69) MKI67 FHA domain-interacting nucleolar phosphoprotein-like| Length = 276 Score = 37.0 bits (84), Expect = 0.034 Identities = 16/47 (34%), Positives = 31/47 (65%), Gaps = 1/47 (2%) Frame = +1 Query: 310 VFVGNVDYACTPEEVQQHFNSCGTVNRVTI-LTDKFGQPKGFAYVEF 447 +++G++ A +++++F+ GTV R+ + + K G KG+AYVEF Sbjct: 43 IYIGHIPRALYEPQLREYFSQFGTVTRLRLSRSKKTGNSKGYAYVEF 89
>RBM4_MOUSE (Q8C7Q4) RNA-binding protein 4 (RNA-binding motif protein 4)| (RNA-binding motif protein 4a) (Lark homolog) (mLark) Length = 361 Score = 37.0 bits (84), Expect = 0.034 Identities = 25/93 (26%), Positives = 46/93 (49%), Gaps = 1/93 (1%) Frame = +1 Query: 244 EMQGGDPNATTSEAKEEMDSRSVFVGNVDYACTPEEVQQHFNSCGTVNRVTILTDKFGQP 423 ++ G + N S+ K + ++ + VGN+ CT +E++ F G V I+ D Sbjct: 59 KLHGVNINVEASKNKSKASTK-LHVGNISPTCTNQELRAKFEEYGPVIECDIVKD----- 112 Query: 424 KGFAYVEFVEAEAIQEAVK-LSESELHGRQIKV 519 +A+V AE EA++ L +E G+++ V Sbjct: 113 --YAFVHMERAEDAVEAIRGLDNTEFQGKRMHV 143
>RSD1_SCHPO (O13845) RNA-binding protein rsd1| Length = 604 Score = 37.0 bits (84), Expect = 0.034 Identities = 21/80 (26%), Positives = 41/80 (51%), Gaps = 1/80 (1%) Frame = +1 Query: 283 AKEEMDSRSVFVGNVDYACTPEEVQQHFNSCGTVNRVTILTDKFGQPKGFAYVEFVEAEA 462 A E+ + V N+ + T E+V+ F G + V + D + KGF Y+++ + Sbjct: 333 ASAEIPFHRLCVSNIHFNLTDEDVKAIFEPFGDIEFVHLQRDDQNRSKGFGYIQYRNPIS 392 Query: 463 IQEAV-KLSESELHGRQIKV 519 + A+ K++ +L GR ++V Sbjct: 393 ARNALEKMNGFDLAGRNMRV 412
>RB15B_MOUSE (Q6PHZ5) Putative RNA-binding protein 15B (RNA-binding motif| protein 15B) Length = 564 Score = 37.0 bits (84), Expect = 0.034 Identities = 17/73 (23%), Positives = 37/73 (50%) Frame = +1 Query: 289 EEMDSRSVFVGNVDYACTPEEVQQHFNSCGTVNRVTILTDKFGQPKGFAYVEFVEAEAIQ 468 ++ +R++F+GN+D++ + E+++ F G + V I GQ +A+++F + Sbjct: 5 DQRATRNLFIGNLDHSVSEVELRRAFEKYGIIEEVVIKRPARGQGGAYAFLKFQNLDMAH 64 Query: 469 EAVKLSESELHGR 507 A + GR Sbjct: 65 RAKVAMSGRVIGR 77
>RBM4B_RAT (Q64LC9) RNA-binding protein 4B (RNA-binding motif protein 4B)| (RNA-binding protein 30) (RNA-binding motif protein 30) (Zinc-responsive protein ZD7) Length = 357 Score = 37.0 bits (84), Expect = 0.034 Identities = 25/93 (26%), Positives = 46/93 (49%), Gaps = 1/93 (1%) Frame = +1 Query: 244 EMQGGDPNATTSEAKEEMDSRSVFVGNVDYACTPEEVQQHFNSCGTVNRVTILTDKFGQP 423 ++ G + N S+ K + ++ + VGN+ CT +E++ F G V I+ D Sbjct: 59 KLHGVNINVEASKNKSKASTK-LHVGNISPTCTNQELRAKFEEYGPVIECDIVKD----- 112 Query: 424 KGFAYVEFVEAEAIQEAVK-LSESELHGRQIKV 519 +A+V AE EA++ L +E G+++ V Sbjct: 113 --YAFVHMERAEDAVEAIRGLDNTEFQGKRMHV 143
>RBM4B_MOUSE (Q8VE92) RNA-binding protein 4B (RNA-binding motif protein 4B)| (RNA-binding protein 30) (RNA-binding motif protein 30) Length = 357 Score = 37.0 bits (84), Expect = 0.034 Identities = 25/93 (26%), Positives = 46/93 (49%), Gaps = 1/93 (1%) Frame = +1 Query: 244 EMQGGDPNATTSEAKEEMDSRSVFVGNVDYACTPEEVQQHFNSCGTVNRVTILTDKFGQP 423 ++ G + N S+ K + ++ + VGN+ CT +E++ F G V I+ D Sbjct: 59 KLHGVNINVEASKNKSKASTK-LHVGNISPTCTNQELRAKFEEYGPVIECDIVKD----- 112 Query: 424 KGFAYVEFVEAEAIQEAVK-LSESELHGRQIKV 519 +A+V AE EA++ L +E G+++ V Sbjct: 113 --YAFVHMERAEDAVEAIRGLDNTEFQGKRMHV 143
>RB15B_HUMAN (Q8NDT2) Putative RNA-binding protein 15B (RNA-binding motif| protein 15B) Length = 563 Score = 37.0 bits (84), Expect = 0.034 Identities = 17/73 (23%), Positives = 37/73 (50%) Frame = +1 Query: 289 EEMDSRSVFVGNVDYACTPEEVQQHFNSCGTVNRVTILTDKFGQPKGFAYVEFVEAEAIQ 468 ++ +R++F+GN+D++ + E+++ F G + V I GQ +A+++F + Sbjct: 5 DQRATRNLFIGNLDHSVSEVELRRAFEKYGIIEEVVIKRPARGQGGAYAFLKFQNLDMAH 64 Query: 469 EAVKLSESELHGR 507 A + GR Sbjct: 65 RAKVAMSGRVIGR 77
>EPAB_XENTR (Q6DEY7) Embryonic polyadenylate-binding protein (Embryonic poly(A)| binding protein) (ePABP) Length = 629 Score = 37.0 bits (84), Expect = 0.034 Identities = 24/94 (25%), Positives = 47/94 (50%), Gaps = 4/94 (4%) Frame = +1 Query: 256 GDPNATTSEAKEEMDSR----SVFVGNVDYACTPEEVQQHFNSCGTVNRVTILTDKFGQP 423 G+ + K+E +R +++V N+D + +++ F+ GT+ ++T+ G Sbjct: 274 GELKRKFEQIKQERINRYQGVNLYVKNLDDGIDDDRLRKEFSPYGTITSAKVMTEG-GHS 332 Query: 424 KGFAYVEFVEAEAIQEAVKLSESELHGRQIKVAP 525 KGF +V F E +AV +E++GR + P Sbjct: 333 KGFGFVCFSSPEEATKAV----TEMNGRIVSTKP 362 Score = 30.0 bits (66), Expect = 4.1 Identities = 14/58 (24%), Positives = 31/58 (53%) Frame = +1 Query: 307 SVFVGNVDYACTPEEVQQHFNSCGTVNRVTILTDKFGQPKGFAYVEFVEAEAIQEAVK 480 +VF+ N+D + + + F++ G + ++ D+ G +G+ +V F EA A++ Sbjct: 100 NVFIKNLDESIDNKALYDTFSAFGNILSCKVVCDEHGS-RGYGFVHFETQEAANRAIQ 156
>EPABB_XENLA (Q6GR16) Embryonic polyadenylate-binding protein-B (Embryonic| poly(A) binding protein-B) (ePABP-B) (ePAB-B) (XePABP-B) Length = 629 Score = 37.0 bits (84), Expect = 0.034 Identities = 24/94 (25%), Positives = 47/94 (50%), Gaps = 4/94 (4%) Frame = +1 Query: 256 GDPNATTSEAKEEMDSR----SVFVGNVDYACTPEEVQQHFNSCGTVNRVTILTDKFGQP 423 G+ + K+E +R +++V N+D + +++ F+ GT+ ++T+ G Sbjct: 274 GELKRKFEQIKQERINRYQGVNLYVKNLDDGIDDDRLRKEFSPYGTITSTKVMTEG-GHS 332 Query: 424 KGFAYVEFVEAEAIQEAVKLSESELHGRQIKVAP 525 KGF +V F E +AV +E++GR + P Sbjct: 333 KGFGFVCFSSPEEATKAV----TEMNGRIVSTKP 362 Score = 30.8 bits (68), Expect = 2.4 Identities = 14/58 (24%), Positives = 32/58 (55%) Frame = +1 Query: 307 SVFVGNVDYACTPEEVQQHFNSCGTVNRVTILTDKFGQPKGFAYVEFVEAEAIQEAVK 480 +VF+ N+D + + + F++ G + ++ D++G +G+ +V F EA A++ Sbjct: 100 NVFIKNLDDSIDNKALYDTFSAFGDILSCKVVCDEYGS-RGYGFVHFETQEAANRAIQ 156
>RBM28_HUMAN (Q9NW13) RNA-binding protein 28 (RNA-binding motif protein 28)| Length = 758 Score = 36.6 bits (83), Expect = 0.044 Identities = 18/59 (30%), Positives = 35/59 (59%), Gaps = 1/59 (1%) Frame = +1 Query: 307 SVFVGNVDYACTPEEVQQHFNSCGTVNRVTILTDKFGQP-KGFAYVEFVEAEAIQEAVK 480 ++FVG + + E++++ F+ G V + ++T+K + +GF YV F E +Q A+K Sbjct: 4 TLFVGRLPPSARSEQLEELFSQVGPVKQCFVVTEKGSKACRGFGYVTFSMLEDVQRALK 62 Score = 34.3 bits (77), Expect = 0.22 Identities = 20/81 (24%), Positives = 40/81 (49%), Gaps = 1/81 (1%) Frame = +1 Query: 280 EAKEEMDSRSVFVGNVDYACTPEEVQQHFNSCGTVNRVTILTDKFGQPKGFAYVEFVEAE 459 +AK + + N+ + C+ ++++ F G V V I G+ +GF +V+F Sbjct: 105 KAKVADKKARLIIRNLSFKCSEDDLKTVFAQFGAVLEVNIPRKPDGKMRGFGFVQFKNLL 164 Query: 460 AIQEAVK-LSESELHGRQIKV 519 +A+K ++ E+ GR + V Sbjct: 165 EAGKALKGMNMKEIKGRTVAV 185
>SFR12_MOUSE (Q8BZX4) Splicing factor, arginine/serine-rich 12| (Serine-arginine-rich splicing regulatory protein 86) (SRrp86) Length = 494 Score = 36.6 bits (83), Expect = 0.044 Identities = 27/101 (26%), Positives = 47/101 (46%), Gaps = 14/101 (13%) Frame = +1 Query: 259 DPNATT-------------SEAKEEMDSRSVFVGNVD-YACTPEEVQQHFNSCGTVNRVT 396 DPN TT +K + R+V+VGN++ T +++ + F G V V Sbjct: 41 DPNITTLGEIPQPPLMGNVDPSKIDEIRRTVYVGNLNSQTTTADQLLEFFKQVGEVKFVR 100 Query: 397 ILTDKFGQPKGFAYVEFVEAEAIQEAVKLSESELHGRQIKV 519 + D+ QP FA+VEF + ++ A+ + R +K+ Sbjct: 101 MAGDET-QPTRFAFVEFADQNSVPRALAFNGVMFGDRPLKI 140
>ROC3_ARATH (Q04836) 31 kDa ribonucleoprotein, chloroplast precursor| (RNA-binding protein RNP-T) (RNA-binding protein 1/2/3) (AtRBP33) (RNA-binding protein cp31) Length = 329 Score = 36.6 bits (83), Expect = 0.044 Identities = 24/89 (26%), Positives = 43/89 (48%), Gaps = 5/89 (5%) Frame = +1 Query: 277 SEAKEEMDSRSVFVGNVDYACTPEEVQQHFNSCGTVNRVTILTDK-FGQPKGFAYVEFVE 453 +E E + +FVGN+ Y + + F GTV ++ ++ Q +GF +V Sbjct: 141 AEFPEPSEEAKLFVGNLAYDVNSQALAMLFEQAGTVEIAEVIYNRETDQSRGFGFVTMSS 200 Query: 454 AEAIQEAV-KLSESELHGRQI---KVAPK 528 + + AV K + +L+GR + K AP+ Sbjct: 201 VDEAETAVEKFNRYDLNGRLLTVNKAAPR 229 Score = 36.2 bits (82), Expect = 0.058 Identities = 21/72 (29%), Positives = 38/72 (52%), Gaps = 2/72 (2%) Frame = +1 Query: 310 VFVGNVDYACTPEEVQQHFNSCGTVNRVTILTDK-FGQPKGFAYVEFVEAEAIQEAVK-L 483 V+VGN+ + ++Q F+ G V ++ D+ G+ +GF +V + + + EA+ L Sbjct: 246 VYVGNLPWDVDNGRLEQLFSEHGKVVEARVVYDRETGRSRGFGFVTMSDVDELNEAISAL 305 Query: 484 SESELHGRQIKV 519 L GR I+V Sbjct: 306 DGQNLEGRAIRV 317
>U2AF2_CAEEL (P90978) Splicing factor U2AF 65 kDa subunit (U2 auxiliary factor| 65 kDa subunit) (U2 snRNP auxiliary factor large subunit) (U2AF65) Length = 496 Score = 36.6 bits (83), Expect = 0.044 Identities = 23/83 (27%), Positives = 35/83 (42%), Gaps = 6/83 (7%) Frame = +1 Query: 301 SRSVFVGNVDYACTPEEVQQHFNS----CGTVNRV--TILTDKFGQPKGFAYVEFVEAEA 462 SR ++VGN+ + C E + FN CG IL + K FA++EF + Sbjct: 183 SRRLYVGNIPFGCNEEAMLDFFNQQMHLCGLAQAPGNPILLCQINLDKNFAFIEFRSIDE 242 Query: 463 IQEAVKLSESELHGRQIKVAPKR 531 + G+Q+KV R Sbjct: 243 TTAGMAFDGINFMGQQLKVRRPR 265 Score = 34.3 bits (77), Expect = 0.22 Identities = 17/74 (22%), Positives = 39/74 (52%), Gaps = 1/74 (1%) Frame = +1 Query: 301 SRSVFVGNVDYACTPEEVQQHFNSCGTVNRVTILTDKFGQPKGFAYVEFVEAEAIQEAVK 480 + +F+G + T ++V++ S G + ++ D G KG+A+ E+++ +A+ Sbjct: 290 ANKIFIGGLPNYLTEDQVKELLCSFGPLKAFSLNVDSQGNSKGYAFAEYLDPTLTDQAIA 349 Query: 481 -LSESELHGRQIKV 519 L+ +L +Q+ V Sbjct: 350 GLNGMQLGDKQLVV 363
>RBM4_BOVIN (Q3MHX3) RNA-binding protein 4 (RNA-binding motif protein 4)| (RNA-binding motif protein 4a) Length = 362 Score = 36.6 bits (83), Expect = 0.044 Identities = 25/93 (26%), Positives = 46/93 (49%), Gaps = 1/93 (1%) Frame = +1 Query: 244 EMQGGDPNATTSEAKEEMDSRSVFVGNVDYACTPEEVQQHFNSCGTVNRVTILTDKFGQP 423 ++ G + N S+ K + ++ + VGN+ CT +E++ F G V I+ D Sbjct: 59 KLHGVNINVEASKNKSKTSTK-LHVGNISPTCTNKELRAKFEEYGPVIECDIVKD----- 112 Query: 424 KGFAYVEFVEAEAIQEAVK-LSESELHGRQIKV 519 +A+V AE EA++ L +E G+++ V Sbjct: 113 --YAFVHMERAEDAVEAIRGLDNTEFQGKRMHV 143
>RBM4_HUMAN (Q9BWF3) RNA-binding protein 4 (RNA-binding motif protein 4)| (RNA-binding motif protein 4a) (Lark homolog) (hLark) Length = 364 Score = 36.6 bits (83), Expect = 0.044 Identities = 25/93 (26%), Positives = 46/93 (49%), Gaps = 1/93 (1%) Frame = +1 Query: 244 EMQGGDPNATTSEAKEEMDSRSVFVGNVDYACTPEEVQQHFNSCGTVNRVTILTDKFGQP 423 ++ G + N S+ K + ++ + VGN+ CT +E++ F G V I+ D Sbjct: 59 KLHGVNINVEASKNKSKTSTK-LHVGNISPTCTNKELRAKFEEYGPVIECDIVKD----- 112 Query: 424 KGFAYVEFVEAEAIQEAVK-LSESELHGRQIKV 519 +A+V AE EA++ L +E G+++ V Sbjct: 113 --YAFVHMERAEDAVEAIRGLDNTEFQGKRMHV 143
>U2AF2_MOUSE (P26369) Splicing factor U2AF 65 kDa subunit (U2 auxiliary factor| 65 kDa subunit) (U2 snRNP auxiliary factor large subunit) Length = 475 Score = 36.2 bits (82), Expect = 0.058 Identities = 19/79 (24%), Positives = 38/79 (48%), Gaps = 6/79 (7%) Frame = +1 Query: 301 SRSVFVGNVDYACTPEEVQQHFNSCGTVNRVT------ILTDKFGQPKGFAYVEFVEAEA 462 +R ++VGN+ + T E + FN+ + +T +L + Q K FA++EF + Sbjct: 148 ARRLYVGNIPFGITEEAMMDFFNAQMRLGGLTQAPGNPVLAVQINQDKNFAFLEFRSVDE 207 Query: 463 IQEAVKLSESELHGRQIKV 519 +A+ G+ +K+ Sbjct: 208 TTQAMAFDGIIFQGQSLKI 226 Score = 29.3 bits (64), Expect = 7.1 Identities = 16/72 (22%), Positives = 36/72 (50%), Gaps = 1/72 (1%) Frame = +1 Query: 301 SRSVFVGNVDYACTPEEVQQHFNSCGTVNRVTILTDKF-GQPKGFAYVEFVEAEAIQEAV 477 + +F+G + ++V++ S G + ++ D G KG+A+ E+V+ +A+ Sbjct: 258 AHKLFIGGLPNYLNDDQVKELLTSFGPLKAFNLVKDSATGLSKGYAFCEYVDINVTDQAI 317 Query: 478 KLSESELHGRQI 513 + L+G Q+ Sbjct: 318 ----AGLNGMQL 325
>U2AF2_HUMAN (P26368) Splicing factor U2AF 65 kDa subunit (U2 auxiliary factor| 65 kDa subunit) (U2 snRNP auxiliary factor large subunit) (hU2AF(65)) Length = 475 Score = 36.2 bits (82), Expect = 0.058 Identities = 19/79 (24%), Positives = 38/79 (48%), Gaps = 6/79 (7%) Frame = +1 Query: 301 SRSVFVGNVDYACTPEEVQQHFNSCGTVNRVT------ILTDKFGQPKGFAYVEFVEAEA 462 +R ++VGN+ + T E + FN+ + +T +L + Q K FA++EF + Sbjct: 148 ARRLYVGNIPFGITEEAMMDFFNAQMRLGGLTQAPGNPVLAVQINQDKNFAFLEFRSVDE 207 Query: 463 IQEAVKLSESELHGRQIKV 519 +A+ G+ +K+ Sbjct: 208 TTQAMAFDGIIFQGQSLKI 226 Score = 29.3 bits (64), Expect = 7.1 Identities = 16/72 (22%), Positives = 36/72 (50%), Gaps = 1/72 (1%) Frame = +1 Query: 301 SRSVFVGNVDYACTPEEVQQHFNSCGTVNRVTILTDKF-GQPKGFAYVEFVEAEAIQEAV 477 + +F+G + ++V++ S G + ++ D G KG+A+ E+V+ +A+ Sbjct: 258 AHKLFIGGLPNYLNDDQVKELLTSFGPLKAFNLVKDSATGLSKGYAFCEYVDINVTDQAI 317 Query: 478 KLSESELHGRQI 513 + L+G Q+ Sbjct: 318 ----AGLNGMQL 325
>SFRS1_ARATH (O22315) Pre-mRNA-splicing factor SF2 (SR1 protein)| Length = 303 Score = 36.2 bits (82), Expect = 0.058 Identities = 22/69 (31%), Positives = 37/69 (53%) Frame = +1 Query: 301 SRSVFVGNVDYACTPEEVQQHFNSCGTVNRVTILTDKFGQPKGFAYVEFVEAEAIQEAVK 480 SR+V+VGN+ EV+ F+ G V ++ + +P G+A+VEF +A ++A+ Sbjct: 6 SRTVYVGNLPGDIREREVEDLFSKYGPVVQIDLKVPP--RPPGYAFVEFDDARDAEDAI- 62 Query: 481 LSESELHGR 507 HGR Sbjct: 63 ------HGR 65
>MINT_MOUSE (Q62504) Msx2-interacting protein (SPEN homolog)| (SMART/HDAC1-associated repressor protein) Length = 3644 Score = 35.8 bits (81), Expect = 0.075 Identities = 18/59 (30%), Positives = 34/59 (57%) Frame = +1 Query: 298 DSRSVFVGNVDYACTPEEVQQHFNSCGTVNRVTILTDKFGQPKGFAYVEFVEAEAIQEA 474 ++R ++VGN+ E++ +HF G V V IL + + A+V+FV+ ++ Q+A Sbjct: 4 ETRHLWVGNLPENVREEKIIEHFKRYGRVESVKILPKRGSEGGVAAFVDFVDIKSAQKA 62
>SFR12_HUMAN (Q8WXA9) Splicing factor, arginine/serine-rich 12| (Serine-arginine-rich splicing regulatory protein 86) (SRrp86) (Splicing regulatory protein 508) (SRrp508) Length = 508 Score = 35.8 bits (81), Expect = 0.075 Identities = 21/73 (28%), Positives = 39/73 (53%), Gaps = 1/73 (1%) Frame = +1 Query: 304 RSVFVGNVD-YACTPEEVQQHFNSCGTVNRVTILTDKFGQPKGFAYVEFVEAEAIQEAVK 480 R+V+VGN++ T +++ + F G V V + D+ QP FA+VEF + ++ A+ Sbjct: 66 RTVYVGNLNSQTTTADQLLEFFKQVGEVKFVRMAGDET-QPTRFAFVEFADQNSVPRALA 124 Query: 481 LSESELHGRQIKV 519 + R +K+ Sbjct: 125 FNGVMFGDRPLKI 137
>HNRH1_MOUSE (O35737) Heterogeneous nuclear ribonucleoprotein H (hnRNP H)| Length = 448 Score = 35.8 bits (81), Expect = 0.075 Identities = 19/73 (26%), Positives = 38/73 (52%), Gaps = 3/73 (4%) Frame = +1 Query: 310 VFVGNVDYACTPEEVQQHFNSCGTVNR---VTILTDKFGQPKGFAYVEFVEAEAIQEAVK 480 V V + ++C+ +EVQ+ F+ C N + + + G+P G A+VE + ++ A+K Sbjct: 12 VKVRGLPWSCSADEVQRFFSDCKIQNGAQGIRFIYTREGRPSGEAFVELESEDEVKLALK 71 Query: 481 LSESELHGRQIKV 519 + R ++V Sbjct: 72 KDRETMGHRYVEV 84
>HNRH1_HUMAN (P31943) Heterogeneous nuclear ribonucleoprotein H (hnRNP H)| Length = 448 Score = 35.8 bits (81), Expect = 0.075 Identities = 19/73 (26%), Positives = 38/73 (52%), Gaps = 3/73 (4%) Frame = +1 Query: 310 VFVGNVDYACTPEEVQQHFNSCGTVNR---VTILTDKFGQPKGFAYVEFVEAEAIQEAVK 480 V V + ++C+ +EVQ+ F+ C N + + + G+P G A+VE + ++ A+K Sbjct: 12 VKVRGLPWSCSADEVQRFFSDCKIQNGAQGIRFIYTREGRPSGEAFVELESEDEVKLALK 71 Query: 481 LSESELHGRQIKV 519 + R ++V Sbjct: 72 KDRETMGHRYVEV 84
>GRSF1_HUMAN (Q12849) G-rich sequence factor 1 (GRSF-1)| Length = 447 Score = 35.8 bits (81), Expect = 0.075 Identities = 21/68 (30%), Positives = 35/68 (51%), Gaps = 1/68 (1%) Frame = +1 Query: 331 YACTPEEVQQHFNSCGTVNRVTILTDKFGQPK-GFAYVEFVEAEAIQEAVKLSESELHGR 507 Y+C +++ F V+ +T + D G+ K G AYV+F E E +A+ E+ R Sbjct: 226 YSCNEKDIVDFFAGLNIVD-ITFVMDYRGRRKTGEAYVQFEEPEMANQALLKHREEIGNR 284 Query: 508 QIKVAPKR 531 I++ P R Sbjct: 285 YIEIFPSR 292
>SFR12_RAT (Q9JKL7) Splicing factor, arginine/serine-rich 12| (Serine-arginine-rich splicing regulatory protein 86) (SRrp86) (SR-related protein of 86 kDa) Length = 494 Score = 35.8 bits (81), Expect = 0.075 Identities = 21/73 (28%), Positives = 39/73 (53%), Gaps = 1/73 (1%) Frame = +1 Query: 304 RSVFVGNVD-YACTPEEVQQHFNSCGTVNRVTILTDKFGQPKGFAYVEFVEAEAIQEAVK 480 R+V+VGN++ T +++ + F G V V + D+ QP FA+VEF + ++ A+ Sbjct: 69 RTVYVGNLNSQTTTADQLLEFFKQVGEVKFVRMAGDET-QPTRFAFVEFADQNSVPRALA 127 Query: 481 LSESELHGRQIKV 519 + R +K+ Sbjct: 128 FNGVMFGDRPLKI 140
>MINT_HUMAN (Q96T58) Msx2-interacting protein (SPEN homolog)| (SMART/HDAC1-associated repressor protein) Length = 3664 Score = 35.8 bits (81), Expect = 0.075 Identities = 18/59 (30%), Positives = 34/59 (57%) Frame = +1 Query: 298 DSRSVFVGNVDYACTPEEVQQHFNSCGTVNRVTILTDKFGQPKGFAYVEFVEAEAIQEA 474 ++R ++VGN+ E++ +HF G V V IL + + A+V+FV+ ++ Q+A Sbjct: 4 ETRHLWVGNLPENVREEKIIEHFKRYGRVESVKILPKRGSEGGVAAFVDFVDIKSAQKA 62
>IF34_CAEEL (Q19706) Probable eukaryotic translation initiation factor 3| subunit 4 (eIF-3 delta) (eIF3 p44) (eIF-3 RNA-binding subunit) (eIF3g) Length = 256 Score = 35.8 bits (81), Expect = 0.075 Identities = 23/80 (28%), Positives = 39/80 (48%), Gaps = 2/80 (2%) Frame = +1 Query: 286 KEEMDSRSVFVGNVDYACTPEEVQQHFNSCGTVNRVTILTDKF-GQPKGFAYVEFVEAEA 462 + D + V N+ +E++ F G V R+ I DK G PKGFA+V F + Sbjct: 170 RNRSDENTCRVTNLPQEMNEDELRDLFGKIGRVIRIFIARDKVTGLPKGFAFVTFESRDD 229 Query: 463 IQEAV-KLSESELHGRQIKV 519 A+ +L++ ++ +KV Sbjct: 230 AARAIAELNDIRMYHMVLKV 249
>ROA2_HUMAN (P22626) Heterogeneous nuclear ribonucleoproteins A2/B1 (hnRNP A2 /| hnRNP B1) Length = 353 Score = 35.8 bits (81), Expect = 0.075 Identities = 23/96 (23%), Positives = 46/96 (47%), Gaps = 1/96 (1%) Frame = +1 Query: 235 VAKEMQGGDPNATTSEAKEEMDSRSVFVGNVDYACTPEEVQQHFNSCGTVNRVTILTDK- 411 VA+E + G P A + K +FVG + ++ +F G ++ + I+TD+ Sbjct: 97 VARE-ESGKPGAHVTVKK-------LFVGGIKEDTEEHHLRDYFEEYGKIDTIEIITDRQ 148 Query: 412 FGQPKGFAYVEFVEAEAIQEAVKLSESELHGRQIKV 519 G+ +GF +V F + + + + V ++G +V Sbjct: 149 SGKKRGFGFVTFDDHDPVDKIVLQKYHTINGHNAEV 184
>GRSF1_MOUSE (Q8C5Q4) G-rich sequence factor 1 (GRSF-1)| Length = 479 Score = 35.8 bits (81), Expect = 0.075 Identities = 21/68 (30%), Positives = 35/68 (51%), Gaps = 1/68 (1%) Frame = +1 Query: 331 YACTPEEVQQHFNSCGTVNRVTILTDKFGQPK-GFAYVEFVEAEAIQEAVKLSESELHGR 507 Y+C +++ F V+ +T + D G+ K G AYV+F E E +A+ E+ R Sbjct: 258 YSCNEKDIVDFFAGLNIVD-ITFVMDYRGRRKTGEAYVQFEEPEMANQALLKHREEIGNR 316 Query: 508 QIKVAPKR 531 I++ P R Sbjct: 317 YIEIFPSR 324
>NSR1_YEAST (P27476) Nuclear localization sequence-binding protein (P67)| Length = 414 Score = 35.8 bits (81), Expect = 0.075 Identities = 26/90 (28%), Positives = 42/90 (46%), Gaps = 6/90 (6%) Frame = +1 Query: 244 EMQGGDPNATTSEAKEEMDSRS-----VFVGNVDYACTPEEVQQHFNSCGTVNRVTILTD 408 +M P AK+ D+ S +F+GN+ + + + + F G V V I T Sbjct: 242 DMSTSKPAGNNDRAKKFGDTPSEPSDTLFLGNLSFNADRDAIFELFAKHGEVVSVRIPTH 301 Query: 409 -KFGQPKGFAYVEFVEAEAIQEAVKLSESE 495 + QPKGF YV+F E ++A+ + E Sbjct: 302 PETEQPKGFGYVQFSNMEDAKKALDALQGE 331
>ROA2_MOUSE (O88569) Heterogeneous nuclear ribonucleoproteins A2/B1 (hnRNP A2 /| hnRNP B1) Length = 341 Score = 35.8 bits (81), Expect = 0.075 Identities = 23/96 (23%), Positives = 46/96 (47%), Gaps = 1/96 (1%) Frame = +1 Query: 235 VAKEMQGGDPNATTSEAKEEMDSRSVFVGNVDYACTPEEVQQHFNSCGTVNRVTILTDK- 411 VA+E + G P A + K +FVG + ++ +F G ++ + I+TD+ Sbjct: 85 VARE-ESGKPGAHVTVKK-------LFVGGIKEDTEEHHLRDYFEEYGKIDTIEIITDRQ 136 Query: 412 FGQPKGFAYVEFVEAEAIQEAVKLSESELHGRQIKV 519 G+ +GF +V F + + + + V ++G +V Sbjct: 137 SGKKRGFGFVTFDDHDPVDKIVLQKYHTINGHNAEV 172
>RO22_XENLA (P51990) Heterogeneous nuclear ribonucleoprotein A2 homolog 2| (hnRNP A2(B)) Length = 358 Score = 35.4 bits (80), Expect = 0.098 Identities = 17/73 (23%), Positives = 36/73 (49%), Gaps = 1/73 (1%) Frame = +1 Query: 304 RSVFVGNVDYACTPEEVQQHFNSCGTVNRVTILTDK-FGQPKGFAYVEFVEAEAIQEAVK 480 + +FVG + ++++F G + I+TDK G+ +GF +V F + + + + V Sbjct: 100 KKLFVGGIKEDTEEHHLREYFEEYGKIESTEIITDKQSGKKRGFGFVTFNDHDPVDKIVL 159 Query: 481 LSESELHGRQIKV 519 ++G +V Sbjct: 160 QKYHTINGHNAEV 172
>U2AF2_CAEBR (P90727) Splicing factor U2AF 65 kDa subunit (U2 auxiliary factor| 65 kDa subunit) (U2 snRNP auxiliary factor large subunit) (U2AF65) Length = 488 Score = 35.4 bits (80), Expect = 0.098 Identities = 22/89 (24%), Positives = 46/89 (51%), Gaps = 2/89 (2%) Frame = +1 Query: 259 DPNATTSEAKEEMDSRS-VFVGNVDYACTPEEVQQHFNSCGTVNRVTILTDKFGQPKGFA 435 D NA + +DS + +F+G + T ++V++ S G + ++ D G KG+A Sbjct: 266 DMNARMPVSSIVVDSANKIFIGGLPNYLTEDQVKELLCSFGPLKAFSLNVDSQGNSKGYA 325 Query: 436 YVEFVEAEAIQEAVK-LSESELHGRQIKV 519 + E+++ +A+ L+ +L +Q+ V Sbjct: 326 FAEYLDPTLTDQAIAGLNGMQLGDKQLVV 354 Score = 34.3 bits (77), Expect = 0.22 Identities = 22/83 (26%), Positives = 34/83 (40%), Gaps = 6/83 (7%) Frame = +1 Query: 301 SRSVFVGNVDYACTPEEVQQHFNS----CGTVNRV--TILTDKFGQPKGFAYVEFVEAEA 462 SR ++VGN+ + C E + FN C IL + K FA++EF + Sbjct: 174 SRRLYVGNIPFGCNEEAMLDFFNQQMHLCNLAQAPGNPILLCQINLDKNFAFIEFRSIDE 233 Query: 463 IQEAVKLSESELHGRQIKVAPKR 531 + G+Q+KV R Sbjct: 234 TTAGMAFDGINFMGQQLKVRRPR 256
>U2AF2_DROME (Q24562) Splicing factor U2AF 50 kDa subunit (U2 auxiliary factor| 50 kDa subunit) (U2 snRNP auxiliary factor large subunit) Length = 416 Score = 35.4 bits (80), Expect = 0.098 Identities = 19/79 (24%), Positives = 36/79 (45%), Gaps = 6/79 (7%) Frame = +1 Query: 301 SRSVFVGNVDYACTPEEVQQHFN------SCGTVNRVTILTDKFGQPKGFAYVEFVEAEA 462 +R ++VGN+ + T EE+ + FN +L + K FA++EF + Sbjct: 92 ARRLYVGNIPFGVTEEEMMEFFNQQMHLVGLAQAAGSPVLACQINLDKNFAFLEFRSIDE 151 Query: 463 IQEAVKLSESELHGRQIKV 519 +A+ L G+ +K+ Sbjct: 152 TTQAMAFDGINLKGQSLKI 170
>G3BP_SCHPO (O94260) Putative G3BP-like protein| Length = 434 Score = 35.4 bits (80), Expect = 0.098 Identities = 23/94 (24%), Positives = 46/94 (48%) Frame = +1 Query: 250 QGGDPNATTSEAKEEMDSRSVFVGNVDYACTPEEVQQHFNSCGTVNRVTILTDKFGQPKG 429 Q P A +++ E +++ SVFV N+ + ++ + G V + +F + KG Sbjct: 298 QTQQPTAPYTQSNELLET-SVFVKNIPPETSDVSLKSAMSIFGPVKAI-----EFARRKG 351 Query: 430 FAYVEFVEAEAIQEAVKLSESELHGRQIKVAPKR 531 AYV+FV E +Q A+ +++ + + +R Sbjct: 352 TAYVDFVNHECVQLALNKKTLQINNATLNIEERR 385
>HNRH2_MOUSE (P70333) Heterogeneous nuclear ribonucleoprotein H' (hnRNP H')| Length = 449 Score = 35.4 bits (80), Expect = 0.098 Identities = 20/73 (27%), Positives = 37/73 (50%), Gaps = 3/73 (4%) Frame = +1 Query: 310 VFVGNVDYACTPEEVQQHFNSCGTVNR---VTILTDKFGQPKGFAYVEFVEAEAIQEAVK 480 V V + ++C+ EEV + F+ C N V + + G+P G A+VE + ++ A+K Sbjct: 13 VKVRGLPWSCSAEEVMRFFSDCKIQNGTSGVRFIYTREGRPSGEAFVELESEDEVKLALK 72 Query: 481 LSESELHGRQIKV 519 + R ++V Sbjct: 73 KDRETMGHRYVEV 85
>RSP6_CAEEL (Q18409) Probable splicing factor, arginine/serine-rich 6| (RNA-binding protein srp-1) (CeSRp20) Length = 179 Score = 35.4 bits (80), Expect = 0.098 Identities = 22/76 (28%), Positives = 44/76 (57%), Gaps = 1/76 (1%) Frame = +1 Query: 295 MDSRSVFVGNVDYACTPEEVQQHFNSCGTVNRVTILTDKFGQPKGFAYVEFVEAEAIQEA 474 MD++ V+VG + T +E+++ F+ G + +V + +P GFA+VE+ + ++A Sbjct: 1 MDAK-VYVGGLPSDATSQELEEIFDRFGRIRKVWVAR----RPPGFAFVEYDDVRDAEDA 55 Query: 475 VK-LSESELHGRQIKV 519 V+ L S + G + +V Sbjct: 56 VRALDGSRICGVRARV 71
>PUF68_DROME (Q8T6B9) Poly U-binding splicing factor half pint (68 kDa poly| U-binding splicing factor) (Protein half pint) (PUF60 homolog) Length = 637 Score = 35.0 bits (79), Expect = 0.13 Identities = 21/72 (29%), Positives = 39/72 (54%), Gaps = 2/72 (2%) Frame = +1 Query: 310 VFVGNVDYACTPEEVQQHFNSCGTVNRVTILTDKFGQP-KGFAYVEFVEAEAIQEAV-KL 483 V+VG++ + + ++ F G + + + D Q KGFA+VE+ E Q A+ ++ Sbjct: 132 VYVGSISFELKEDTIRVAFTPFGPIKSINMSWDPITQKHKGFAFVEYEIPEGAQLALEQM 191 Query: 484 SESELHGRQIKV 519 + + + GR IKV Sbjct: 192 NGALMGGRNIKV 203
>IF4H_MOUSE (Q9WUK2) Eukaryotic translation initiation factor 4H (eIF-4H)| (Williams-Beuren syndrome chromosome region 1 protein homolog) Length = 247 Score = 35.0 bits (79), Expect = 0.13 Identities = 25/95 (26%), Positives = 48/95 (50%), Gaps = 7/95 (7%) Frame = +1 Query: 256 GDPNATTSEAKEEMDSR---SVFVGNVDYACTPEEVQQHFNSCGTVNRVTIL----TDKF 414 G S +++E+ + + +VGN+ + ++ F ++ V ++ TDKF Sbjct: 22 GSAGGHGSRSQKELPTEPPYTAYVGNLPFNTVQGDIDAIFKDL-SIRSVRLVRDKDTDKF 80 Query: 415 GQPKGFAYVEFVEAEAIQEAVKLSESELHGRQIKV 519 KGF YVEF E ++++EA+ + L R ++V Sbjct: 81 ---KGFCYVEFDEVDSLKEALTYDGALLGDRSLRV 112
>IF4H_HUMAN (Q15056) Eukaryotic translation initiation factor 4H (eIF-4H)| (Williams-Beuren syndrome chromosome region 1 protein) Length = 247 Score = 35.0 bits (79), Expect = 0.13 Identities = 25/95 (26%), Positives = 48/95 (50%), Gaps = 7/95 (7%) Frame = +1 Query: 256 GDPNATTSEAKEEMDSR---SVFVGNVDYACTPEEVQQHFNSCGTVNRVTIL----TDKF 414 G S +++E+ + + +VGN+ + ++ F ++ V ++ TDKF Sbjct: 22 GSAGGHGSRSQKELPTEPPYTAYVGNLPFNTVQGDIDAIFKDL-SIRSVRLVRDKDTDKF 80 Query: 415 GQPKGFAYVEFVEAEAIQEAVKLSESELHGRQIKV 519 KGF YVEF E ++++EA+ + L R ++V Sbjct: 81 ---KGFCYVEFDEVDSLKEALTYDGALLGDRSLRV 112
>HNRH2_HUMAN (P55795) Heterogeneous nuclear ribonucleoprotein H' (hnRNP H')| (FTP-3) Length = 449 Score = 35.0 bits (79), Expect = 0.13 Identities = 19/73 (26%), Positives = 37/73 (50%), Gaps = 3/73 (4%) Frame = +1 Query: 310 VFVGNVDYACTPEEVQQHFNSCGTVNR---VTILTDKFGQPKGFAYVEFVEAEAIQEAVK 480 V V + ++C+ +EV + F+ C N + + + G+P G A+VE E ++ A+K Sbjct: 13 VKVRGLPWSCSADEVMRFFSDCKIQNGTSGIRFIYTREGRPSGEAFVELESEEEVKLALK 72 Query: 481 LSESELHGRQIKV 519 + R ++V Sbjct: 73 KDRETMGHRYVEV 85
>EPABA_XENLA (Q98SP8) Embryonic polyadenylate-binding protein-A (Embryonic| poly(A) binding protein-A) (ePABP-A) (ePAB-A) (XePABP-A) Length = 629 Score = 35.0 bits (79), Expect = 0.13 Identities = 20/73 (27%), Positives = 38/73 (52%) Frame = +1 Query: 307 SVFVGNVDYACTPEEVQQHFNSCGTVNRVTILTDKFGQPKGFAYVEFVEAEAIQEAVKLS 486 +++V N+D + +++ F GT+ ++T+ G KGF +V F E +AV Sbjct: 295 NLYVKNLDDGIDDDRLRKEFLPYGTITSAKVMTEG-GHSKGFGFVCFSSPEEATKAV--- 350 Query: 487 ESELHGRQIKVAP 525 +E++GR + P Sbjct: 351 -TEMNGRIVSTKP 362 Score = 29.6 bits (65), Expect = 5.4 Identities = 14/58 (24%), Positives = 31/58 (53%) Frame = +1 Query: 307 SVFVGNVDYACTPEEVQQHFNSCGTVNRVTILTDKFGQPKGFAYVEFVEAEAIQEAVK 480 +VF+ N+D + + + F++ G + ++ D+ G +G+ +V F EA A++ Sbjct: 100 NVFIKNLDESIDNKALYDTFSAFGNILSCKVVCDEHGS-RGYGFVHFETHEAANRAIQ 156
>RBM15_HUMAN (Q96T37) Putative RNA-binding protein 15 (RNA-binding motif protein| 15) (One-twenty two protein) Length = 977 Score = 34.3 bits (77), Expect = 0.22 Identities = 18/68 (26%), Positives = 33/68 (48%), Gaps = 3/68 (4%) Frame = +1 Query: 253 GGDPNATTSEAKEEMD---SRSVFVGNVDYACTPEEVQQHFNSCGTVNRVTILTDKFGQP 423 G P E E D +R++F+GN+D T ++++ F+ G + V I GQ Sbjct: 354 GAAPFREVDEISPEDDQRANRTLFLGNLDITVTESDLRRAFDRFGVITEVDIKRPSRGQT 413 Query: 424 KGFAYVEF 447 + +++F Sbjct: 414 STYGFLKF 421
>SF3B4_HUMAN (Q15427) Splicing factor 3B subunit 4 (Spliceosome-associated| protein 49) (SAP 49) (SF3b50) (Pre-mRNA-splicing factor SF3b 49 kDa subunit) Length = 424 Score = 34.3 bits (77), Expect = 0.22 Identities = 22/79 (27%), Positives = 40/79 (50%), Gaps = 2/79 (2%) Frame = +1 Query: 289 EEMDSRSVFVGNVDYACTPEEVQQHFNSCGTVNRVTILTDKF-GQPKGFAYVEFVEAEAI 465 E +V+VG +D + + + F G V + D+ GQ +G+ +VEF+ E Sbjct: 8 ERNQDATVYVGGLDEKVSEPLLWELFLQAGPVVNTHMPKDRVTGQHQGYGFVEFLSEEDA 67 Query: 466 QEAVKLSES-ELHGRQIKV 519 A+K+ +L+G+ I+V Sbjct: 68 DYAIKIMNMIKLYGKPIRV 86
>THOC4_MOUSE (O08583) THO complex subunit 4 (Tho4) (RNA and export| factor-binding protein 1) (REF1-I) (Ally of AML-1 and LEF-1) (Aly/REF) Length = 254 Score = 33.9 bits (76), Expect = 0.29 Identities = 18/71 (25%), Positives = 38/71 (53%), Gaps = 1/71 (1%) Frame = +1 Query: 310 VFVGNVDYACTPEEVQQHFNSCGTVNRVTILTDKFGQPKGFAYVEFV-EAEAIQEAVKLS 486 + V N+D+ + ++Q+ F GT+ + + D+ G+ G A V F +A+A++ + + Sbjct: 106 LLVSNLDFGVSDADIQELFAEFGTLKKAAVHYDRSGRSLGTADVHFERKADALKAMKQYN 165 Query: 487 ESELHGRQIKV 519 L GR + + Sbjct: 166 GVPLDGRPMNI 176
>THOC4_HUMAN (Q86V81) THO complex subunit 4 (Tho4) (Ally of AML-1 and LEF-1)| (Transcriptional coactivator Aly/REF) (bZIP-enhancing factor BEF) Length = 256 Score = 33.9 bits (76), Expect = 0.29 Identities = 18/71 (25%), Positives = 38/71 (53%), Gaps = 1/71 (1%) Frame = +1 Query: 310 VFVGNVDYACTPEEVQQHFNSCGTVNRVTILTDKFGQPKGFAYVEFV-EAEAIQEAVKLS 486 + V N+D+ + ++Q+ F GT+ + + D+ G+ G A V F +A+A++ + + Sbjct: 107 LLVSNLDFGVSDADIQELFAEFGTLKKAAVHYDRSGRSLGTADVHFERKADALKAMKQYN 166 Query: 487 ESELHGRQIKV 519 L GR + + Sbjct: 167 GVPLDGRPMNI 177
>NOP3_YEAST (Q01560) Nucleolar protein 3 (Mitochondrial targeting suppressor 1| protein) (Nuclear polyadenylated RNA-binding protein 1) Length = 414 Score = 33.9 bits (76), Expect = 0.29 Identities = 27/95 (28%), Positives = 41/95 (43%) Frame = +1 Query: 241 KEMQGGDPNATTSEAKEEMDSRSVFVGNVDYACTPEEVQQHFNSCGTVNRVTILTDKFGQ 420 + M G P E E+ + +FV E+ + F G + V IL Sbjct: 106 EHMHGRPPMHHRQEG--ELSNTRLFVRPFPLDVQESELNEIFGPFGPMKEVKILN----- 158 Query: 421 PKGFAYVEFVEAEAIQEAVKLSESELHGRQIKVAP 525 GFA+VEF EAE+ +A++ E+HG+ P Sbjct: 159 --GFAFVEFEEAESAAKAIE----EVHGKSFANQP 187
>RNPS1_XENLA (Q5XG24) RNA-binding protein with serine-rich domain 1| Length = 283 Score = 33.9 bits (76), Expect = 0.29 Identities = 18/71 (25%), Positives = 39/71 (54%), Gaps = 3/71 (4%) Frame = +1 Query: 310 VFVGNVDYACTPEEVQQHFNSCGTVNRVTILTDKFGQ--PKGFAYVEFVEAEAIQEAVK- 480 V +G + T + + + F++ G + + + D++ KG+AYVEF E ++A+K Sbjct: 140 VHIGRLTRNVTKDHILEIFSTYGKIKMIDMPVDRYHPHLSKGYAYVEFEAPEEAEKALKH 199 Query: 481 LSESELHGRQI 513 + ++ G++I Sbjct: 200 MDGGQIDGQEI 210
>PPIE_MOUSE (Q9QZH3) Peptidyl-prolyl cis-trans isomerase E (EC 5.2.1.8) (PPIase| E) (Rotamase E) (Cyclophilin E) (Cyclophilin 33) Length = 301 Score = 33.5 bits (75), Expect = 0.37 Identities = 24/74 (32%), Positives = 39/74 (52%), Gaps = 2/74 (2%) Frame = +1 Query: 304 RSVFVGNVDYACTPEEVQQHFNSCGTVNRVTILTD-KFGQPKGFAYVEFVEAEAIQEAV- 477 R ++VG + + + F G + + I D + + +GFA+VEF AE A+ Sbjct: 6 RVLYVGGLAEEVDDKVLHAAFIPFGDITDIQIPLDYETEKHRGFAFVEFELAEDAAAAID 65 Query: 478 KLSESELHGRQIKV 519 ++ESEL GR I+V Sbjct: 66 NMNESELFGRTIRV 79
>PPIE_HUMAN (Q9UNP9) Peptidyl-prolyl cis-trans isomerase E (EC 5.2.1.8) (PPIase| E) (Rotamase E) (Cyclophilin E) (Cyclophilin 33) Length = 301 Score = 33.5 bits (75), Expect = 0.37 Identities = 24/74 (32%), Positives = 39/74 (52%), Gaps = 2/74 (2%) Frame = +1 Query: 304 RSVFVGNVDYACTPEEVQQHFNSCGTVNRVTILTD-KFGQPKGFAYVEFVEAEAIQEAV- 477 R ++VG + + + F G + + I D + + +GFA+VEF AE A+ Sbjct: 6 RVLYVGGLAEEVDDKVLHAAFIPFGDITDIQIPLDYETEKHRGFAFVEFELAEDAAAAID 65 Query: 478 KLSESELHGRQIKV 519 ++ESEL GR I+V Sbjct: 66 NMNESELFGRTIRV 79
>MK67I_HUMAN (Q9BYG3) MKI67 FHA domain-interacting nucleolar phosphoprotein| (Nucleolar protein interacting with the FHA domain of pKI-67) (hNIFK) (Nucleolar phosphoprotein Nopp34) Length = 293 Score = 33.5 bits (75), Expect = 0.37 Identities = 21/92 (22%), Positives = 42/92 (45%), Gaps = 1/92 (1%) Frame = +1 Query: 241 KEMQGGDPNATTSEAKEEMDSRSVFVGNVDYACTPEEVQQHFNSCGTVNRVTILTDK-FG 417 KE+ T + +E++ V+V ++ ++ +F+ GTV R + K G Sbjct: 24 KEVAQVRKRITQRKKQEQLTPGVVYVRHLPNLLDETQIFSYFSQFGTVTRFRLSRSKRTG 83 Query: 418 QPKGFAYVEFVEAEAIQEAVKLSESELHGRQI 513 KG+A+VEF + + + + L G ++ Sbjct: 84 NSKGYAFVEFESEDVAKIVAETMNNYLFGERL 115
>YDB2_SCHPO (Q10355) Hypothetical RNA-binding protein C22E12.02 in chromosome I| Length = 219 Score = 33.5 bits (75), Expect = 0.37 Identities = 17/72 (23%), Positives = 39/72 (54%), Gaps = 1/72 (1%) Frame = +1 Query: 310 VFVGNVDYACTPEEVQQHFNSCGTVNRVTILTDKFGQPKGFAYVEFVEAEAIQEAVKLSE 489 +FVGN+ E + Q F+ ++ + ++ D+ G+ +GF +V F +++ +A + Sbjct: 32 LFVGNLGNDVNDESLYQAFSEYPSLVKTKVVRDREGKTRGFGFVSFKDSDQFLKAWREKN 91 Query: 490 SELHG-RQIKVA 522 + G R +K++ Sbjct: 92 GKYIGSRPVKLS 103
>YCQ9_SCHPO (O13674) Hypothetical RNA-binding protein C74.09 in chromosome III| Length = 654 Score = 33.5 bits (75), Expect = 0.37 Identities = 18/61 (29%), Positives = 35/61 (57%) Frame = +1 Query: 301 SRSVFVGNVDYACTPEEVQQHFNSCGTVNRVTILTDKFGQPKGFAYVEFVEAEAIQEAVK 480 SR+VF+GN+ + +E+++ F G + + IL+ K A+V F+ I++A+K Sbjct: 298 SRNVFIGNLPSSYHEKEIEEAFGKFGKIEHIKILS-----KKNIAFVHFLN---IRDAIK 349 Query: 481 L 483 + Sbjct: 350 V 350
>RBP1_DROME (Q02427) RNA-binding protein 1| Length = 144 Score = 33.1 bits (74), Expect = 0.49 Identities = 20/71 (28%), Positives = 37/71 (52%), Gaps = 1/71 (1%) Frame = +1 Query: 310 VFVGNVDYACTPEEVQQHFNSCGTVNRVTILTDKFGQPKGFAYVEFVEAEAIQEAVK-LS 486 V+VGN+ + + E++ F G + V + + P GFA+VEF + ++A + L Sbjct: 13 VYVGNLGSSASKHEIEGAFAKYGPLRNVWVARN----PPGFAFVEFEDRRDAEDATRALD 68 Query: 487 ESELHGRQIKV 519 + G +I+V Sbjct: 69 GTRCCGTRIRV 79
>PPIE_SCHMA (Q26548) Peptidyl-prolyl cis-trans isomerase E (EC 5.2.1.8) (PPIase| E) (Rotamase E) (Cyclophilin E) Length = 273 Score = 33.1 bits (74), Expect = 0.49 Identities = 16/33 (48%), Positives = 23/33 (69%), Gaps = 1/33 (3%) Frame = +1 Query: 424 KGFAYVEFVEAEAIQEAV-KLSESELHGRQIKV 519 +GFA+VEF E E A+ ++ESE+ GR I+V Sbjct: 11 RGFAFVEFEEVEDAMSAIDNMNESEIFGRTIRV 43
>NONO_MOUSE (Q99K48) Non-POU domain-containing octamer-binding protein (NonO| protein) Length = 473 Score = 32.7 bits (73), Expect = 0.64 Identities = 18/59 (30%), Positives = 31/59 (52%) Frame = +1 Query: 301 SRSVFVGNVDYACTPEEVQQHFNSCGTVNRVTILTDKFGQPKGFAYVEFVEAEAIQEAV 477 S S+ V N+ + E +++ F+ G V R ++ D G+P G VEF A ++A+ Sbjct: 149 SASLTVRNLPQYVSNELLEEAFSVFGQVERAVVIVDDRGRPSGKGIVEFSGKPAARKAL 207
>NONO_PONPY (Q5RFL9) Non-POU domain-containing octamer-binding protein (NonO| protein) Length = 471 Score = 32.7 bits (73), Expect = 0.64 Identities = 18/59 (30%), Positives = 31/59 (52%) Frame = +1 Query: 301 SRSVFVGNVDYACTPEEVQQHFNSCGTVNRVTILTDKFGQPKGFAYVEFVEAEAIQEAV 477 S S+ V N+ + E +++ F+ G V R ++ D G+P G VEF A ++A+ Sbjct: 147 SASLTVRNLPQYVSNELLEEAFSVFGQVERAVVIVDDRGRPSGKGIVEFSGKPAARKAL 205
>NONO_HUMAN (Q15233) Non-POU domain-containing octamer-binding protein (NonO| protein) (54 kDa nuclear RNA- and DNA-binding protein) (p54(nrb)) (p54nrb) (55 kDa nuclear protein) (NMT55) (DNA-binding p52/p100 complex, 52 kDa subunit) Length = 471 Score = 32.7 bits (73), Expect = 0.64 Identities = 18/59 (30%), Positives = 31/59 (52%) Frame = +1 Query: 301 SRSVFVGNVDYACTPEEVQQHFNSCGTVNRVTILTDKFGQPKGFAYVEFVEAEAIQEAV 477 S S+ V N+ + E +++ F+ G V R ++ D G+P G VEF A ++A+ Sbjct: 147 SASLTVRNLPQYVSNELLEEAFSVFGQVERAVVIVDDRGRPSGKGIVEFSGKPAARKAL 205
>NONO_RAT (Q5FVM4) Non-POU domain-containing octamer-binding protein (NonO| protein) Length = 476 Score = 32.7 bits (73), Expect = 0.64 Identities = 18/59 (30%), Positives = 31/59 (52%) Frame = +1 Query: 301 SRSVFVGNVDYACTPEEVQQHFNSCGTVNRVTILTDKFGQPKGFAYVEFVEAEAIQEAV 477 S S+ V N+ + E +++ F+ G V R ++ D G+P G VEF A ++A+ Sbjct: 152 SASLTVRNLPQYVSNELLEEAFSVFGQVERAVVIVDDRGRPSGKGIVEFSGKPAARKAL 210
>SFRS7_MOUSE (Q8BL97) Splicing factor, arginine/serine-rich 7| Length = 267 Score = 32.7 bits (73), Expect = 0.64 Identities = 21/71 (29%), Positives = 38/71 (53%), Gaps = 1/71 (1%) Frame = +1 Query: 310 VFVGNVDYACTPEEVQQHFNSCGTVNRVTILTDKFGQPKGFAYVEFVEAEAIQEAVK-LS 486 V+VGN+ E+++ F+ G + V I + P GFA+VEF + ++AV+ L Sbjct: 42 VYVGNLGTGAGKGELERAFSYYGPLRTVWIARN----PPGFAFVEFEDPRDAEDAVRGLD 97 Query: 487 ESELHGRQIKV 519 + G +++V Sbjct: 98 GKVICGSRVRV 108
>SFRS7_HUMAN (Q16629) Splicing factor, arginine/serine-rich 7 (Splicing factor| 9G8) Length = 238 Score = 32.7 bits (73), Expect = 0.64 Identities = 21/71 (29%), Positives = 38/71 (53%), Gaps = 1/71 (1%) Frame = +1 Query: 310 VFVGNVDYACTPEEVQQHFNSCGTVNRVTILTDKFGQPKGFAYVEFVEAEAIQEAVK-LS 486 V+VGN+ E+++ F+ G + V I + P GFA+VEF + ++AV+ L Sbjct: 13 VYVGNLGTGAGKGELERAFSYYGPLRTVWIARN----PPGFAFVEFEDPRDAEDAVRGLD 68 Query: 487 ESELHGRQIKV 519 + G +++V Sbjct: 69 GKVICGSRVRV 79
>REFP2_MOUSE (Q9JJW6) RNA and export factor-binding protein 2| Length = 218 Score = 32.3 bits (72), Expect = 0.83 Identities = 18/71 (25%), Positives = 36/71 (50%), Gaps = 1/71 (1%) Frame = +1 Query: 310 VFVGNVDYACTPEEVQQHFNSCGTVNRVTILTDKFGQPKGFAYVEFV-EAEAIQEAVKLS 486 + V N+D+ + ++Q+ F GT+ + + D+ G+ G A V F A+A++ + Sbjct: 77 LLVSNLDFGVSDADIQELFAEFGTLKKAAVDYDRSGRSLGTADVHFERRADALKAMKQYK 136 Query: 487 ESELHGRQIKV 519 L GR + + Sbjct: 137 GVPLDGRPMDI 147
>RBM4_BRARE (Q6IQ97) RNA-binding protein 4 (RNA-binding motif protein 4)| Length = 419 Score = 32.0 bits (71), Expect = 1.1 Identities = 23/92 (25%), Positives = 41/92 (44%), Gaps = 1/92 (1%) Frame = +1 Query: 247 MQGGDPNATTSEAKEEMDSRSVFVGNVDYACTPEEVQQHFNSCGTVNRVTILTDKFGQPK 426 + G N S+ K + ++ + VGN+ +CT +E++ F G V I+ D Sbjct: 60 LNGMAMNVEMSKGKPKTSTK-LHVGNISSSCTNQELRAKFEEYGPVVECDIVKD------ 112 Query: 427 GFAYVEFVEAEAIQEAVK-LSESELHGRQIKV 519 +A+V E EA+ L + G+ + V Sbjct: 113 -YAFVHMERVEDAMEAISGLDNTAFQGKLMSV 143
>CAZ_DROME (Q27294) RNA-binding protein cabeza (Sarcoma-associated RNA-binding| fly homolog) (P19) Length = 399 Score = 32.0 bits (71), Expect = 1.1 Identities = 20/82 (24%), Positives = 42/82 (51%), Gaps = 10/82 (12%) Frame = +1 Query: 307 SVFVGNVDYACTPEEVQQHFNSCGTVN--------RVTILTDK-FGQPKGFAYVEFVEAE 459 ++FV +D + T ++++ HF + G + ++ + +K G KG A V + + Sbjct: 121 TIFVSGMDPSTTEQDIETHFGAIGIIKKDKRTMKPKIWLYKNKETGASKGEATVTYDDTN 180 Query: 460 AIQEAVKLSES-ELHGRQIKVA 522 A Q A++ + + +G IKV+ Sbjct: 181 AAQSAIEWFDGRDFNGNAIKVS 202 Database: uniprot_sprot.fasta Posted date: May 25, 2006 5:36 PM Number of letters in database: 80,573,946 Number of sequences in database: 219,361 Lambda K H 0.309 0.127 0.349 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 46,696,225 Number of Sequences: 219361 Number of extensions: 677126 Number of successful extensions: 2060 Number of sequences better than 10.0: 277 Number of HSP's better than 10.0 without gapping: 1888 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 2014 length of database: 80,573,946 effective HSP length: 105 effective length of database: 57,541,041 effective search space used: 4085413911 frameshift window, decay const: 50, 0.1 T: 12 A: 40 X1: 16 ( 7.1 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 42 (21.7 bits)
