ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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| Clone Name | bags8c23 |
|---|---|
| Clone Library Name | barley_pub |
>COPB_YEAST (P41810) Coatomer subunit beta (Beta-coat protein) (Beta-COP)| Length = 973 Score = 137 bits (345), Expect = 3e-32 Identities = 77/210 (36%), Positives = 123/210 (58%) Frame = +2 Query: 2 SVVHLLRXFLGDTNVAAAVDVVLFVREIIETNPKLRVSMIQRLSDTFYQIRASRVCSIAL 181 SVV LL F+GD N AA ++ F++E+IE P+LR ++++ + T ++R+++ AL Sbjct: 401 SVVSLLLDFIGDLNSVAASGIIAFIKEVIEKYPQLRANILENMVQTLDKVRSAKAYRGAL 460 Query: 182 WILGEYSLSLSEVESAITTIKHCLGDLPLFTLSEEGETADSSKPTQPMVNSVTVSSRRPV 361 WI+GEY+ SE++ I++ +G++P+ SE + + + T+ T PV Sbjct: 461 WIMGEYAEGESEIQHCWKHIRNSVGEVPILQ-SEIKKLTQNQEHTEENEVDATAKPTGPV 519 Query: 362 VLADGTYATQSAATEAISTPPVTAGSSASTLNLRSLILSGDFFLAAVVACTLTKLVLRLE 541 +L DGTYAT+SA S VT S +R +LSGDF+ AA++A T+ KLVL+ E Sbjct: 520 ILPDGTYATESAFDVKTSQKSVTDEERDSRPPIRRFVLSGDFYTAAILANTIIKLVLKFE 579 Query: 542 EVQSSKIEANKACTGALLVMTSILQLGLSS 631 V +K N ALL++ SI+++G SS Sbjct: 580 NVSKNKTVINALKAEALLILVSIVRVGQSS 609
>COPB_RAT (P23514) Coatomer subunit beta (Beta-coat protein) (Beta-COP)| Length = 953 Score = 126 bits (316), Expect = 6e-29 Identities = 77/210 (36%), Positives = 121/210 (57%) Frame = +2 Query: 2 SVVHLLRXFLGDTNVAAAVDVVLFVREIIETNPKLRVSMIQRLSDTFYQIRASRVCSIAL 181 +V+ +L FL D+N AAA DV+ FVRE I+ LR+ +++++ + F+ I++ ++ AL Sbjct: 400 NVIPVLMEFLSDSNEAAAADVLEFVREAIQRFDNLRMLIVEKMLEVFHAIKSVKIYRGAL 459 Query: 182 WILGEYSLSLSEVESAITTIKHCLGDLPLFTLSEEGETADSSKPTQPMVNSVTVSSRRPV 361 WILGEY + +++S +T ++ LG++P+ SE + A KP + +TV + + Sbjct: 460 WILGEYCSTKEDIQSVMTEVRRSLGEIPIVE-SEIKKEAGELKPEE----EITVGPVQKL 514 Query: 362 VLADGTYATQSAATEAISTPPVTAGSSASTLNLRSLILSGDFFLAAVVACTLTKLVLRLE 541 V GTYATQSA + + T LR +L GDFF+AA +A TLTK+ LR Sbjct: 515 VTEMGTYATQSALSSSRPTK-----KEEDRPPLRGFLLDGDFFVAASLATTLTKIALRYV 569 Query: 542 EVQSSKIEANKACTGALLVMTSILQLGLSS 631 + K + N A+L+M +IL LG SS Sbjct: 570 ALVQEKKKQNSFVAEAMLLMATILHLGKSS 599
>COPB_MOUSE (Q9JIF7) Coatomer subunit beta (Beta-coat protein) (Beta-COP)| Length = 953 Score = 126 bits (316), Expect = 6e-29 Identities = 77/210 (36%), Positives = 121/210 (57%) Frame = +2 Query: 2 SVVHLLRXFLGDTNVAAAVDVVLFVREIIETNPKLRVSMIQRLSDTFYQIRASRVCSIAL 181 +V+ +L FL D+N AAA DV+ FVRE I+ LR+ +++++ + F+ I++ ++ AL Sbjct: 400 NVIPVLMEFLSDSNEAAAADVLEFVREAIQRFDNLRMLIVEKMLEVFHAIKSVKIYRGAL 459 Query: 182 WILGEYSLSLSEVESAITTIKHCLGDLPLFTLSEEGETADSSKPTQPMVNSVTVSSRRPV 361 WILGEY + +++S +T ++ LG++P+ SE + A KP + +TV + + Sbjct: 460 WILGEYCSTKEDIQSVMTEVRRSLGEIPIVE-SEIKKEAGELKPEE----EITVGPVQKL 514 Query: 362 VLADGTYATQSAATEAISTPPVTAGSSASTLNLRSLILSGDFFLAAVVACTLTKLVLRLE 541 V GTYATQSA + + T LR +L GDFF+AA +A TLTK+ LR Sbjct: 515 VTEMGTYATQSALSSSRPTK-----KEEDRPPLRGFLLDGDFFVAASLATTLTKIALRYV 569 Query: 542 EVQSSKIEANKACTGALLVMTSILQLGLSS 631 + K + N A+L+M +IL LG SS Sbjct: 570 ALVQEKKKQNSFVAEAMLLMATILHLGKSS 599
>COPB_HUMAN (P53618) Coatomer subunit beta (Beta-coat protein) (Beta-COP)| Length = 953 Score = 126 bits (316), Expect = 6e-29 Identities = 78/210 (37%), Positives = 120/210 (57%) Frame = +2 Query: 2 SVVHLLRXFLGDTNVAAAVDVVLFVREIIETNPKLRVSMIQRLSDTFYQIRASRVCSIAL 181 +V+ +L FL D N AAA DV+ FVRE I+ LR+ +++++ + F+ I++ ++ AL Sbjct: 400 NVIPVLMEFLSDNNEAAAADVLEFVREAIQRFDNLRMLIVEKMLEVFHAIKSVKIYRGAL 459 Query: 182 WILGEYSLSLSEVESAITTIKHCLGDLPLFTLSEEGETADSSKPTQPMVNSVTVSSRRPV 361 WILGEY + +++S +T I+ LG++P+ SE + A KP + +TV + + Sbjct: 460 WILGEYCSTKEDIQSVMTEIRRSLGEIPIVE-SEIKKEAGELKPEE----EITVGPVQKL 514 Query: 362 VLADGTYATQSAATEAISTPPVTAGSSASTLNLRSLILSGDFFLAAVVACTLTKLVLRLE 541 V GTYATQSA + + T LR +L GDFF+AA +A TLTK+ LR Sbjct: 515 VTEMGTYATQSALSSSRPTK-----KEEDRPPLRGFLLDGDFFVAASLATTLTKIALRYV 569 Query: 542 EVQSSKIEANKACTGALLVMTSILQLGLSS 631 + K + N A+L+M +IL LG SS Sbjct: 570 ALVQEKKKQNSFVAEAMLLMATILHLGKSS 599
>COPB_DROME (P45437) Coatomer subunit beta (Beta-coat protein) (Beta-COP)| Length = 964 Score = 124 bits (311), Expect = 2e-28 Identities = 79/223 (35%), Positives = 118/223 (52%), Gaps = 12/223 (5%) Frame = +2 Query: 2 SVVHLLRXFLGDTNVAAAVDVVLFVREIIETNPKLRVSMIQRLSDTFYQIRASRVCSIAL 181 +V+ +L FL DTN AA DV++F+RE I+ P LR +I+ L + F QI++S++ A+ Sbjct: 397 NVIPVLVEFLSDTNELAAADVLIFIREAIQKFPALRALIIEHLIEAFPQIKSSKIHRAAV 456 Query: 182 WILGEYSLSLSEVESAITTIKHCLGDLPLFTLSEE---GETADSSKPTQPMVNSVTVSSR 352 WILGEY + S++ I I+ LG++P+ + G+ + K Q S Sbjct: 457 WILGEY-VEGSQILEVIAVIQQTLGEVPMVEAEQRRLAGDQTEEQKQQQGSAGGNAAGSA 515 Query: 353 RP---------VVLADGTYATQSAATEAISTPPVTAGSSASTLNLRSLILSGDFFLAAVV 505 V +DGTYATQS A S PV LR ++ GDFF+ A + Sbjct: 516 AEGSGSGNASNKVTSDGTYATQS----AYSLAPVAKAEKRPP--LRQYLMDGDFFIGAAL 569 Query: 506 ACTLTKLVLRLEEVQSSKIEANKACTGALLVMTSILQLGLSSY 634 + TLTKL LR E+++ N+ T +L+M+SIL LG S + Sbjct: 570 SATLTKLALRYAELETEARAQNRLTTQVMLIMSSILHLGKSGF 612
>COPB_SCHPO (Q9UUF7) Coatomer subunit beta (Beta-coat protein) (Beta-COP)| Length = 940 Score = 119 bits (298), Expect = 8e-27 Identities = 73/214 (34%), Positives = 121/214 (56%), Gaps = 2/214 (0%) Frame = +2 Query: 2 SVVHLLRXFLGDTNVAAAVDVVLFVREIIETNPKLRVSMIQRLSDTFYQIRASRVCSIAL 181 + + L + D +A V+ F++E++E P LR S I +L + ++RA ++ + Sbjct: 392 TAIQYLLSHISDFQSKSASSVLSFIKEVMEKFPDLRSSNITKLLLSLKELRAGKIFRGVI 451 Query: 182 WILGEYSLSLSEVESAITTIKHCLGDLPLFTLSEEGETADSSKPTQPMVNSVTV-SSRRP 358 WI GEY L+ ++ A +I+ LG++P+ E+ S+ P ++ ++ +S Sbjct: 452 WIAGEYCLTEDDIRVAWKSIRASLGEVPILASEEQLLKDVSNVPEDDLLIDISAPASTSR 511 Query: 359 VVLADGTYATQSAAT-EAISTPPVTAGSSASTLNLRSLILSGDFFLAAVVACTLTKLVLR 535 VL DGTYAT+SA T EA+S + A ++ LR+ ILSGD++LAAV+A LTKLV+R Sbjct: 512 KVLPDGTYATESAVTSEALSAARLEAVKASKKPPLRTQILSGDYYLAAVLASALTKLVMR 571 Query: 536 LEEVQSSKIEANKACTGALLVMTSILQLGLSSYL 637 + K N A L+MTSI+++G S ++ Sbjct: 572 FARLSFDKERLNALKAEACLIMTSIIRVGQSKFV 605
>COPB_DICDI (Q23924) Probable coatomer subunit beta (Beta-coat protein)| (Beta-COP) (Fragment) Length = 400 Score = 38.1 bits (87), Expect = 0.022 Identities = 16/55 (29%), Positives = 34/55 (61%) Frame = +2 Query: 467 LILSGDFFLAAVVACTLTKLVLRLEEVQSSKIEANKACTGALLVMTSILQLGLSS 631 LI GD++LA+ ++ +LTKL R E++ ++NK +++++ ++ L +S Sbjct: 2 LIADGDWYLASCISSSLTKLFFRAEQLNIDNADSNKLKAQVMMIISVLINLSKAS 56
>CPO_DROME (Q01617) Protein couch potato| Length = 738 Score = 35.4 bits (80), Expect = 0.14 Identities = 28/82 (34%), Positives = 38/82 (46%), Gaps = 1/82 (1%) Frame = +2 Query: 224 SAITTIKHCLGDLPLF-TLSEEGETADSSKPTQPMVNSVTVSSRRPVVLADGTYATQSAA 400 +A+ T L D P + S E +A +S PT P +V+S P A A +AA Sbjct: 331 AAVPTTGGSLPDSPAHESHSHESNSATASAPTTPSPAG-SVTSAAPTATATAAAAGSAAA 389 Query: 401 TEAISTPPVTAGSSASTLNLRS 466 T A + P T+ S S NL S Sbjct: 390 TAAATGTPATSAVSDSNNNLNS 411
>SHAN1_RAT (Q9WV48) SH3 and multiple ankyrin repeat domains protein 1 (Shank1)| (GKAP/SAPAP-interacting protein) (SPANK-1) (Synamon) (Somatostatin receptor-interacting protein) (SSTR-interacting protein) (SSTRIP) Length = 2167 Score = 34.7 bits (78), Expect = 0.24 Identities = 32/123 (26%), Positives = 51/123 (41%), Gaps = 1/123 (0%) Frame = +2 Query: 104 LRVSMIQRLSDTFYQIRASRVCSIAL-WILGEYSLSLSEVESAITTIKHCLGDLPLFTLS 280 ++ S+I LS Q S AL W G S + I L LS Sbjct: 1872 VKASIISELSSKLQQFGGSSTAGGALPWARGGSGGSTDSHHGGASYIPERTSSLQRQRLS 1931 Query: 281 EEGETADSSKPTQPMVNSVTVSSRRPVVLADGTYATQSAATEAISTPPVTAGSSASTLNL 460 E+ +T+ SKP+ + + P+ G ++ +AA A T P + +SAST +L Sbjct: 1932 EDSQTSLLSKPSSSIFQNWPKPPLPPLPTGSGVSSSTAAAPGA--TSPSASSASASTRHL 1989 Query: 461 RSL 469 + + Sbjct: 1990 QGV 1992
>PMP20_CHLPN (Q9Z812) Probable outer membrane protein pmp20 precursor (Polymorphic| membrane protein 20) Length = 1723 Score = 32.3 bits (72), Expect = 1.2 Identities = 37/136 (27%), Positives = 64/136 (47%), Gaps = 5/136 (3%) Frame = +2 Query: 191 GEYSLSLSEVESAITTIKHCLGDLPLFTLSEEGETADSSKPTQPMV-NSV--TVSSRRPV 361 G ++++ ++VE+++TT + G S T + T + NSV T +S+ Sbjct: 857 GSFTITDNKVETSLTTSTNLYGG---GIYSSGAVTLTNISGTFGITGNSVINTATSQDAD 913 Query: 362 VLADGTYATQSAATEAISTPPVTAGSSAST--LNLRSLILSGDFFLAAVVACTLTKLVLR 535 + G YAT S + +TP + + +SA+T + I G F AAV ++ ++ Sbjct: 914 IQGGGIYATTSLSINQCNTPILFSNNSAATKKTSTTKQIAGGAIFSAAVTIENNSQPIIF 973 Query: 536 LEEVQSSKIEANKACT 583 L S+K EA A T Sbjct: 974 LN--NSAKSEATTAAT 987
>UNC84_CAEEL (Q20745) Nuclear migration and anchoring protein unc-84| (Uncoordinated protein 84) Length = 1111 Score = 32.3 bits (72), Expect = 1.2 Identities = 26/72 (36%), Positives = 37/72 (51%), Gaps = 1/72 (1%) Frame = +2 Query: 266 LFTLSEEGE-TADSSKPTQPMVNSVTVSSRRPVVLADGTYATQSAATEAISTPPVTAGSS 442 +F+ S GE T+++ PT +V + TV R T AT+ A T A+ TP + + Sbjct: 278 VFSSSPFGEGTSENITPT--VVTTRTVKQRSVTPRFRQTRATREAITRALDTPELEIDTP 335 Query: 443 ASTLNLRSLILS 478 ST LRS LS Sbjct: 336 LSTYGLRSRGLS 347
>YA9A_SCHPO (Q09788) Hypothetical serine-rich protein C13G6.10c precursor| Length = 530 Score = 32.0 bits (71), Expect = 1.6 Identities = 25/113 (22%), Positives = 48/113 (42%), Gaps = 1/113 (0%) Frame = +2 Query: 185 ILGEYSLSLSEVESAITTIKHCLGDLPLFTLSEEGETADSSKPTQPMVNSVTVSSRRPVV 364 + YS S +EV S+ + A SS+ + S +S + Sbjct: 168 VASSYSASSTEVTSSYPASSEVATSTSSYVAPVSSSVASSSEISAGSATSYVPTSSSSIA 227 Query: 365 LADGTY-ATQSAATEAISTPPVTAGSSASTLNLRSLILSGDFFLAAVVACTLT 520 L+ A+ SAA + +STP V++ +++S+ + S++ S A+ + T Sbjct: 228 LSSVVASASVSAANKGVSTPAVSSAAASSSAVVSSVVSSATSVAASSTISSAT 280
>AGA1_YEAST (P32323) A-agglutinin attachment subunit precursor| Length = 725 Score = 31.2 bits (69), Expect = 2.7 Identities = 37/147 (25%), Positives = 59/147 (40%), Gaps = 8/147 (5%) Frame = +2 Query: 200 SLSLSEVES--AITTIKHCLGDLPLFTLSEEGETADSSKPTQPMVNSVTVSSRRPVVLAD 373 S+S S VES A +T + + T+ V+S+T S A Sbjct: 466 SVSTSTVESSYACSTCAETSHSYSSVQTASSSSVTQQTTSTKSWVSSMTTSDEDFNKHAT 525 Query: 374 GTYATQSAATEAISTPPVTAGSSAS----TLNLRSLILSGDFFLAAVVACTLT--KLVLR 535 G Y S+ T IST A S++S + S +LS ++ ++ TL+ +L Sbjct: 526 GKYHVTSSGTSTISTSVSEATSTSSIDSESQEQSSHLLSTSVLSSSSLSATLSSDSTILL 585 Query: 536 LEEVQSSKIEANKACTGALLVMTSILQ 616 V S +E + T + + ILQ Sbjct: 586 FSSVSSLSVEQSPVTTLQISSTSEILQ 612
>TLPC_BACSU (P39209) Methyl-accepting chemotaxis protein tlpC| Length = 573 Score = 31.2 bits (69), Expect = 2.7 Identities = 30/116 (25%), Positives = 48/116 (41%), Gaps = 3/116 (2%) Frame = +2 Query: 80 EIIETNPKLRVSMIQRLSDTFYQIRASRVCSIALWILGEYSLSLSEVESAITTIK---HC 250 E ++T V+MIQR D F +I A+ GE S +S++ +++T I H Sbjct: 457 EHVKTEAAEGVTMIQRTRDAFKEIAAA---------TGEISAEISDLSASVTNISASAHQ 507 Query: 251 LGDLPLFTLSEEGETADSSKPTQPMVNSVTVSSRRPVVLADGTYATQSAATEAIST 418 + D S TAD + T ++R+ L + +A T A T Sbjct: 508 IND------SFAANTAD--------IKESTKNTRQAAALTEEQFAAMEEITAASET 549
>AP2B_SCHPO (O43005) AP-2 complex subunit beta (Beta-adaptin) (Clathrin| assembly protein large beta chain) (Clathrin assembly protein complex 2 beta large chain) Length = 677 Score = 31.2 bits (69), Expect = 2.7 Identities = 17/65 (26%), Positives = 32/65 (49%) Frame = +2 Query: 59 DVVLFVREIIETNPKLRVSMIQRLSDTFYQIRASRVCSIALWILGEYSLSLSEVESAITT 238 + V+ +R+I+ P S++ L + + S +WILG+Y+ E+E +IT Sbjct: 409 EAVIVIRDILRKYPGSYKSLVPILYENLDSLDEPDAKSAVIWILGQYA---EEIEDSITL 465 Query: 239 IKHCL 253 + L Sbjct: 466 LNDYL 470
>HOOK_DROVI (O61493) Protein hook| Length = 678 Score = 30.8 bits (68), Expect = 3.5 Identities = 15/47 (31%), Positives = 26/47 (55%) Frame = -2 Query: 558 FDDCTSSSLNTNLVSVQATTAAKKKSPDRMSDLRFRVDADDPAVTGG 418 FD+ L+TN S+ TT +++ P M D R++A++ A+ G Sbjct: 429 FDELKCGQLSTNSGSLTGTTMSRELQPPAMMDKMQRLEAENKALREG 475
>SCNC_THITI (O66188) Thiocyanate hydrolase gamma subunit (EC 3.5.5.8)| Length = 242 Score = 30.0 bits (66), Expect = 6.0 Identities = 16/55 (29%), Positives = 29/55 (52%) Frame = +2 Query: 353 RPVVLADGTYATQSAATEAISTPPVTAGSSASTLNLRSLILSGDFFLAAVVACTL 517 + + + DG A+++ +++PP G+ + NLR +L+ L VV CTL Sbjct: 77 KKLCIEDGVEASKAVGVNWVTSPPTQFGTPSDYCNLR--VLADSPTLKHVVVCTL 129
>YM92_CAEEL (P34531) Hypothetical protein M01A8.2 in chromosome III| Length = 937 Score = 30.0 bits (66), Expect = 6.0 Identities = 20/73 (27%), Positives = 34/73 (46%), Gaps = 10/73 (13%) Frame = +2 Query: 263 PLFTLSEEGETADSSK--PTQPMVNSVTVSSRRPVV--------LADGTYATQSAATEAI 412 PL+ E + K P++P+V+ T + ++PVV + G + T S A + Sbjct: 456 PLYVAPPAKERVEKEKKIPSKPVVSPPTTAEKKPVVSSIPSTSSASKGPFPTSSFAGGKL 515 Query: 413 STPPVTAGSSAST 451 P T+ SS +T Sbjct: 516 QGPRKTSSSSTTT 528
>TGT_CHLCV (Q822U8) Queuine tRNA-ribosyltransferase (EC 2.4.2.29)| (tRNA-guanine transglycosylase) (Guanine insertion enzyme) Length = 372 Score = 30.0 bits (66), Expect = 6.0 Identities = 23/75 (30%), Positives = 39/75 (52%), Gaps = 2/75 (2%) Frame = +2 Query: 251 LGDLPLF--TLSEEGETADSSKPTQPMVNSVTVSSRRPVVLADGTYATQSAATEAISTPP 424 +GDLP T+ ++ DSS PT+ + + +SS+ P+ +A+ YA ++ + T Sbjct: 263 IGDLPSIHATVGLGIDSFDSSYPTKAARHGLILSSQGPIKIANQAYANDLSSLDPECT-C 321 Query: 425 VTAGSSASTLNLRSL 469 T S+ S LR L Sbjct: 322 ATCTSNISRAYLRHL 336
>WSC4_YEAST (P38739) Cell wall integrity and stress response component 4| precursor Length = 605 Score = 30.0 bits (66), Expect = 6.0 Identities = 23/82 (28%), Positives = 36/82 (43%), Gaps = 2/82 (2%) Frame = +2 Query: 212 SEVESAI--TTIKHCLGDLPLFTLSEEGETADSSKPTQPMVNSVTVSSRRPVVLADGTYA 385 +++ SA+ TT +P T S T +S T V SVT S+ T Sbjct: 173 TDITSALPTTTSTKLSTSIPTSTTSSTSTTTSTSSSTSTTV-SVTSSTSTTTSTTSSTLI 231 Query: 386 TQSAATEAISTPPVTAGSSAST 451 + S ++ + STP T+ + ST Sbjct: 232 STSTSSSSSSTPTTTSSAPIST 253
>YL61_SCHPO (Q8TFG9) Hypothetical serine/threonine-rich protein PB15E9.01c| precursor Length = 943 Score = 30.0 bits (66), Expect = 6.0 Identities = 24/92 (26%), Positives = 40/92 (43%), Gaps = 2/92 (2%) Frame = +2 Query: 200 SLSLSEVESAITTIKHCLGDLPLFTLSEEGETADSSKP--TQPMVNSVTVSSRRPVVLAD 373 S S + + S +T PL +++ T+ SS P + S +VSS P Sbjct: 467 SASSTPLTSVNSTTATSASSTPLTSVNSTSATSASSTPLTSANSTTSTSVSSTAPSYNTS 526 Query: 374 GTYATQSAATEAISTPPVTAGSSASTLNLRSL 469 T S ++ +S+ T +SAS+ L S+ Sbjct: 527 SVLPTSSVSSTPLSSANSTTATSASSTPLTSV 558 Score = 30.0 bits (66), Expect = 6.0 Identities = 24/92 (26%), Positives = 40/92 (43%), Gaps = 2/92 (2%) Frame = +2 Query: 200 SLSLSEVESAITTIKHCLGDLPLFTLSEEGETADSSKP--TQPMVNSVTVSSRRPVVLAD 373 S S + + S +T PL +++ T+ SS P + S +VSS P Sbjct: 353 SASSTPLTSVNSTTATSASSTPLTSVNSTSATSASSTPLTSANSTTSTSVSSTAPSYNTS 412 Query: 374 GTYATQSAATEAISTPPVTAGSSASTLNLRSL 469 T S ++ +S+ T +SAS+ L S+ Sbjct: 413 SVLPTSSVSSTPLSSANSTTATSASSTPLSSV 444
>TTDT_ECOLI (P39414) Putative tartrate carrier (Tartrate transporter)| (Tartrate/succinate antiporter) Length = 487 Score = 30.0 bits (66), Expect = 6.0 Identities = 25/92 (27%), Positives = 42/92 (45%), Gaps = 4/92 (4%) Frame = +2 Query: 356 PVVLADGTYATQSAATEAISTPPVTAGSSAST-LNLRSLIL---SGDFFLAAVVACTLTK 523 P VL G + A TE + P+ + L + +L+L GD+ AA+V ++ Sbjct: 259 PPVLKSGDQVPRWAETELQAMGPLCSREKRMLGLMVGALVLWIFGGDYIDAAMVGYSVVA 318 Query: 524 LVLRLEEVQSSKIEANKACTGALLVMTSILQL 619 L+L L + I +NKA + S++ L Sbjct: 319 LMLLLRIISWDDIVSNKAAWNVFFWLASLITL 350 Database: uniprot_sprot.fasta Posted date: May 25, 2006 5:36 PM Number of letters in database: 80,573,946 Number of sequences in database: 219,361 Lambda K H 0.318 0.135 0.401 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 93,831,106 Number of Sequences: 219361 Number of extensions: 1958674 Number of successful extensions: 5812 Number of sequences better than 10.0: 22 Number of HSP's better than 10.0 without gapping: 5535 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 5795 length of database: 80,573,946 effective HSP length: 107 effective length of database: 57,102,319 effective search space used: 5938641176 frameshift window, decay const: 50, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits)
