ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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| Clone Name | bags8c18 |
|---|---|
| Clone Library Name | barley_pub |
>IF5_MAIZE (P55876) Eukaryotic translation initiation factor 5 (eIF-5)| Length = 451 Score = 189 bits (480), Expect = 3e-48 Identities = 92/99 (92%), Positives = 97/99 (97%) Frame = +1 Query: 172 MALXNIGASNKDDAFYRYKMPRMLTKIEGRGNGIKTNIVNMVDIAKALARPASYTTKYFG 351 MAL NIGASN+DDAFYRYKMPRM+TKIEGRGNGIKTN+VNMVDIAKALARPASYTTKYFG Sbjct: 1 MALQNIGASNRDDAFYRYKMPRMITKIEGRGNGIKTNVVNMVDIAKALARPASYTTKYFG 60 Query: 352 CELGAQSKFDEKTGIALVNGAHDTSKLAGLLENFIKKYV 468 CELGAQSKFDEKTGI+LVNGAHDT+KLAGLLE FIKKYV Sbjct: 61 CELGAQSKFDEKTGISLVNGAHDTAKLAGLLEVFIKKYV 99
>IF5Y_ARATH (Q9C8F1) Probable eukaryotic translation initiation factor 5-1| (eIF-5 1) Length = 439 Score = 186 bits (471), Expect = 3e-47 Identities = 89/99 (89%), Positives = 95/99 (95%) Frame = +1 Query: 172 MALXNIGASNKDDAFYRYKMPRMLTKIEGRGNGIKTNIVNMVDIAKALARPASYTTKYFG 351 MAL NIGASN+DDAFYRYKMPRM+TKIEGRGNGIKTN+VNMV+IAKAL RPA+YTTKYFG Sbjct: 1 MALQNIGASNRDDAFYRYKMPRMMTKIEGRGNGIKTNVVNMVEIAKALGRPAAYTTKYFG 60 Query: 352 CELGAQSKFDEKTGIALVNGAHDTSKLAGLLENFIKKYV 468 CELGAQSKFDEK G +LVNGAHDTSKLAGLLENFIKKYV Sbjct: 61 CELGAQSKFDEKNGTSLVNGAHDTSKLAGLLENFIKKYV 99
>IF5_PHAVU (P48724) Eukaryotic translation initiation factor 5 (eIF-5)| Length = 443 Score = 178 bits (452), Expect = 5e-45 Identities = 87/99 (87%), Positives = 92/99 (92%) Frame = +1 Query: 172 MALXNIGASNKDDAFYRYKMPRMLTKIEGRGNGIKTNIVNMVDIAKALARPASYTTKYFG 351 MAL NIGA N DDAFYRYKMPRM+TKIEGRGNGIKTN+VNMVDIAK LARPASYTTKYFG Sbjct: 1 MALQNIGAGNSDDAFYRYKMPRMVTKIEGRGNGIKTNVVNMVDIAKRLARPASYTTKYFG 60 Query: 352 CELGAQSKFDEKTGIALVNGAHDTSKLAGLLENFIKKYV 468 CELGAQSKFDEKTG + VNGAH+T+KLAGLLE FIKKYV Sbjct: 61 CELGAQSKFDEKTGTSHVNGAHETAKLAGLLEIFIKKYV 99
>IF5Z_ARATH (Q9S825) Probable eukaryotic translation initiation factor 5-2| (eIF-5 2) Length = 437 Score = 176 bits (445), Expect = 4e-44 Identities = 84/99 (84%), Positives = 94/99 (94%) Frame = +1 Query: 172 MALXNIGASNKDDAFYRYKMPRMLTKIEGRGNGIKTNIVNMVDIAKALARPASYTTKYFG 351 MAL NIGASN++DAFYRYKMP+M+TK EG+GNGIKTNI+N V+IAKALARP SYTTKYFG Sbjct: 1 MALQNIGASNRNDAFYRYKMPKMVTKTEGKGNGIKTNIINNVEIAKALARPPSYTTKYFG 60 Query: 352 CELGAQSKFDEKTGIALVNGAHDTSKLAGLLENFIKKYV 468 CELGAQSKFDEKTG +LVNGAH+TSKLAGLLENFIKK+V Sbjct: 61 CELGAQSKFDEKTGTSLVNGAHNTSKLAGLLENFIKKFV 99
>IF5_RAT (Q07205) Eukaryotic translation initiation factor 5 (eIF-5)| Length = 429 Score = 126 bits (316), Expect = 3e-29 Identities = 57/87 (65%), Positives = 72/87 (82%) Frame = +1 Query: 208 DAFYRYKMPRMLTKIEGRGNGIKTNIVNMVDIAKALARPASYTTKYFGCELGAQSKFDEK 387 D FYRYKMPR++ K+EG+GNGIKT IVNMVD+AKAL RP +Y TKYFGCELGAQ++FD K Sbjct: 11 DQFYRYKMPRLIAKVEGKGNGIKTVIVNMVDVAKALNRPPTYPTKYFGCELGAQTQFDVK 70 Query: 388 TGIALVNGAHDTSKLAGLLENFIKKYV 468 +VNG+H+ +KL +L+ FIKK+V Sbjct: 71 NDRYIVNGSHEANKLQDMLDGFIKKFV 97
>IF5_MOUSE (P59325) Eukaryotic translation initiation factor 5 (eIF-5)| Length = 429 Score = 126 bits (316), Expect = 3e-29 Identities = 57/87 (65%), Positives = 72/87 (82%) Frame = +1 Query: 208 DAFYRYKMPRMLTKIEGRGNGIKTNIVNMVDIAKALARPASYTTKYFGCELGAQSKFDEK 387 D FYRYKMPR++ K+EG+GNGIKT IVNMVD+AKAL RP +Y TKYFGCELGAQ++FD K Sbjct: 11 DQFYRYKMPRLIAKVEGKGNGIKTVIVNMVDVAKALNRPPTYPTKYFGCELGAQTQFDVK 70 Query: 388 TGIALVNGAHDTSKLAGLLENFIKKYV 468 +VNG+H+ +KL +L+ FIKK+V Sbjct: 71 NDRYIVNGSHEANKLQDMLDGFIKKFV 97
>IF5_HUMAN (P55010) Eukaryotic translation initiation factor 5 (eIF-5)| Length = 431 Score = 126 bits (316), Expect = 3e-29 Identities = 57/87 (65%), Positives = 72/87 (82%) Frame = +1 Query: 208 DAFYRYKMPRMLTKIEGRGNGIKTNIVNMVDIAKALARPASYTTKYFGCELGAQSKFDEK 387 D FYRYKMPR++ K+EG+GNGIKT IVNMVD+AKAL RP +Y TKYFGCELGAQ++FD K Sbjct: 11 DQFYRYKMPRLIAKVEGKGNGIKTVIVNMVDVAKALNRPPTYPTKYFGCELGAQTQFDVK 70 Query: 388 TGIALVNGAHDTSKLAGLLENFIKKYV 468 +VNG+H+ +KL +L+ FIKK+V Sbjct: 71 NDRYIVNGSHEANKLQDMLDGFIKKFV 97
>IF5_DROME (Q9VXK6) Eukaryotic translation initiation factor 5 (eIF-5)| Length = 464 Score = 123 bits (308), Expect = 3e-28 Identities = 58/99 (58%), Positives = 75/99 (75%) Frame = +1 Query: 172 MALXNIGASNKDDAFYRYKMPRMLTKIEGRGNGIKTNIVNMVDIAKALARPASYTTKYFG 351 MA N+ S D FYRYKMPR+ K+EG+GNGIKT +VNM ++A+A+ RPA+Y TKYFG Sbjct: 1 MATVNVNRS-VTDIFYRYKMPRLQAKVEGKGNGIKTVLVNMAEVARAIGRPATYPTKYFG 59 Query: 352 CELGAQSKFDEKTGIALVNGAHDTSKLAGLLENFIKKYV 468 CELGAQ+ FD K +VNG+HD +KL LL+ FI+K+V Sbjct: 60 CELGAQTLFDHKNERFVVNGSHDVNKLQDLLDGFIRKFV 98
>IF5_CAEEL (Q22918) Eukaryotic translation initiation factor 5 (eIF-5)| Length = 436 Score = 117 bits (294), Expect = 1e-26 Identities = 55/87 (63%), Positives = 66/87 (75%) Frame = +1 Query: 208 DAFYRYKMPRMLTKIEGRGNGIKTNIVNMVDIAKALARPASYTTKYFGCELGAQSKFDEK 387 D FYRYKMP++ K+EG+GNGIKT I NM +IAKAL RP Y TKYFGCELGAQ+ FD K Sbjct: 11 DPFYRYKMPKLSAKVEGKGNGIKTVISNMSEIAKALERPPMYPTKYFGCELGAQTNFDAK 70 Query: 388 TGIALVNGAHDTSKLAGLLENFIKKYV 468 +VNG HD +KL +L+ FIKK+V Sbjct: 71 NERYIVNGEHDANKLQDILDGFIKKFV 97
>IF5_SCHPO (Q09689) Probable eukaryotic translation initiation factor 5| (eIF-5) Length = 395 Score = 106 bits (264), Expect = 3e-23 Identities = 56/99 (56%), Positives = 69/99 (69%) Frame = +1 Query: 172 MALXNIGASNKDDAFYRYKMPRMLTKIEGRGNGIKTNIVNMVDIAKALARPASYTTKYFG 351 MA NI KD +FYRY+MP++ +KIEG+GNGIKT I NM DIAKAL RP Y TK+FG Sbjct: 1 MATINIRRDVKD-SFYRYRMPKLQSKIEGKGNGIKTVIPNMSDIAKALGRPPLYVTKFFG 59 Query: 352 CELGAQSKFDEKTGIALVNGAHDTSKLAGLLENFIKKYV 468 ELGAQ+ +VNGAHD KL LL+ FI+++V Sbjct: 60 FELGAQTTIIADMDRYIVNGAHDAGKLQDLLDVFIRRFV 98
>IF5_YEAST (P38431) Eukaryotic translation initiation factor 5 (eIF-5)| Length = 405 Score = 100 bits (249), Expect = 2e-21 Identities = 48/87 (55%), Positives = 60/87 (68%) Frame = +1 Query: 208 DAFYRYKMPRMLTKIEGRGNGIKTNIVNMVDIAKALARPASYTTKYFGCELGAQSKFDEK 387 D FYRYKMP + K+EGRGNGIKT ++N+ DI+ AL RPA Y KYFG ELGAQ+ Sbjct: 11 DPFYRYKMPPIQAKVEGRGNGIKTAVLNVADISHALNRPAPYIVKYFGFELGAQTSISVD 70 Query: 388 TGIALVNGAHDTSKLAGLLENFIKKYV 468 LVNG H+ +KL +L+ FI K+V Sbjct: 71 KDRYLVNGVHEPAKLQDVLDGFINKFV 97
>IF2B_METKA (Q8TWR5) Translation initiation factor 2 beta subunit (eIF-2-beta)| (aIF2-beta) Length = 138 Score = 40.4 bits (93), Expect = 0.002 Identities = 25/83 (30%), Positives = 44/83 (53%) Frame = +1 Query: 220 RYKMPRMLTKIEGRGNGIKTNIVNMVDIAKALARPASYTTKYFGCELGAQSKFDEKTGIA 399 R++MP+ +EG+ T I N +I+K L R + TKYF ELG D G Sbjct: 26 RFEMPKPKVSVEGK----TTVIRNFKEISKKLDRDPEHITKYFLKELGTAGHVD--GGRL 79 Query: 400 LVNGAHDTSKLAGLLENFIKKYV 468 +++G + + L+N+++++V Sbjct: 80 ILHGVYHPKLVEEELKNYVEEFV 102
>IF2B_DROME (P41375) Eukaryotic translation initiation factor 2 beta subunit| (eIF-2-beta) Length = 312 Score = 36.6 bits (83), Expect = 0.033 Identities = 19/65 (29%), Positives = 31/65 (47%) Frame = +1 Query: 274 KTNIVNMVDIAKALARPASYTTKYFGCELGAQSKFDEKTGIALVNGAHDTSKLAGLLENF 453 KT+ N +DIAK L R + + ELG D + ++ G ++ +L + Sbjct: 195 KTSFANFMDIAKTLHRLPKHLLDFLLAELGTSGSMDGNQQL-IIKGRFQPKQIENVLRRY 253 Query: 454 IKKYV 468 IK+YV Sbjct: 254 IKEYV 258
>IF2B_YEAST (P09064) Eukaryotic translation initiation factor 2 beta subunit| (eIF-2-beta) Length = 285 Score = 34.3 bits (77), Expect = 0.16 Identities = 19/68 (27%), Positives = 34/68 (50%) Frame = +1 Query: 265 NGIKTNIVNMVDIAKALARPASYTTKYFGCELGAQSKFDEKTGIALVNGAHDTSKLAGLL 444 +G KT N+ DIA+ L R + +Y ELG D + + ++ G + ++ +L Sbjct: 168 DGKKTIFSNIQDIAEKLHRSPEHLIQYLFAELGTSGSVDGQKRL-VIKGKFQSKQMENVL 226 Query: 445 ENFIKKYV 468 +I +YV Sbjct: 227 RRYILEYV 234
>IF2B_ARCFU (O27958) Translation initiation factor 2 beta subunit (eIF-2-beta)| (aIF2-beta) Length = 137 Score = 32.7 bits (73), Expect = 0.48 Identities = 23/83 (27%), Positives = 40/83 (48%) Frame = +1 Query: 220 RYKMPRMLTKIEGRGNGIKTNIVNMVDIAKALARPASYTTKYFGCELGAQSKFDEKTGIA 399 R+++PR+ + EG +T + N IAK L R + KY LG D G Sbjct: 26 RFEIPRVSIQREGA----RTILKNFSQIAKTLNRSEDHLYKYIVKSLGTAGFID--NGRL 79 Query: 400 LVNGAHDTSKLAGLLENFIKKYV 468 ++ G S+L ++++++ YV Sbjct: 80 VLQGKFTESELQKEVDDYVRLYV 102
>NU1M_TAMSI (O78698) NADH-ubiquinone oxidoreductase chain 1 (EC 1.6.5.3) (NADH| dehydrogenase subunit 1) Length = 318 Score = 32.3 bits (72), Expect = 0.63 Identities = 15/40 (37%), Positives = 29/40 (72%) Frame = -1 Query: 320 LASAFAISTMFTIFVLMPLPRPSIFVNILGILYL*KASSL 201 +A + A++ FT+++ +P+P+P I +N +GIL++ SSL Sbjct: 73 IAPSLALTLAFTMWIPLPMPQPLINMN-MGILFILATSSL 111
>NU1M_TOLMA (Q70Y23) NADH-ubiquinone oxidoreductase chain 1 (EC 1.6.5.3) (NADH| dehydrogenase subunit 1) Length = 318 Score = 30.4 bits (67), Expect = 2.4 Identities = 16/40 (40%), Positives = 25/40 (62%) Frame = -1 Query: 320 LASAFAISTMFTIFVLMPLPRPSIFVNILGILYL*KASSL 201 LA A S ++++ MP+P P I +N LG+L++ SSL Sbjct: 73 LAPMLAFSLALSMWIPMPMPHPLIHLN-LGVLFILALSSL 111
>NU1M_PRIMA (Q70Y22) NADH-ubiquinone oxidoreductase chain 1 (EC 1.6.5.3) (NADH| dehydrogenase subunit 1) Length = 318 Score = 30.0 bits (66), Expect = 3.1 Identities = 21/70 (30%), Positives = 36/70 (51%) Frame = -1 Query: 410 PLTKAIPVFSSNFDCAPSSHPKYLVV*EAGLASAFAISTMFTIFVLMPLPRPSIFVNILG 231 P+ AI +F P + K + + LA A S ++++ MP+P P + +N LG Sbjct: 48 PIADAIKLFIKE-PLRPLTSSKTMFI----LAPTLAFSLALSMWIPMPMPHPLVNLN-LG 101 Query: 230 ILYL*KASSL 201 +L++ SSL Sbjct: 102 VLFILALSSL 111
>IF2B_METMP (Q6M0H3) Translation initiation factor 2 beta subunit (eIF-2-beta)| (aIF2-beta) Length = 138 Score = 30.0 bits (66), Expect = 3.1 Identities = 23/84 (27%), Positives = 39/84 (46%), Gaps = 1/84 (1%) Frame = +1 Query: 220 RYKMPRMLTKIEGRGNGIKTNIVNMVDIAKALARPASYTTKYFGCELGAQSKFDEKTGIA 399 R+++P + +EG +T I N DIAK + R KY ELG + G+ Sbjct: 27 RFEIPSADSFVEGN----RTIIKNFKDIAKFMERDPQEFAKYVMKELGTAGDME---GVR 79 Query: 400 LV-NGAHDTSKLAGLLENFIKKYV 468 L+ G + ++N++ +YV Sbjct: 80 LILQGKFGWRMVNEKIQNYVNEYV 103
>IF2B_METJA (Q57562) Translation initiation factor 2 beta subunit (eIF-2-beta)| (aIF2-beta) Length = 143 Score = 29.6 bits (65), Expect = 4.1 Identities = 21/83 (25%), Positives = 39/83 (46%) Frame = +1 Query: 220 RYKMPRMLTKIEGRGNGIKTNIVNMVDIAKALARPASYTTKYFGCELGAQSKFDEKTGIA 399 R+++P + IEG +T I N ++AKA+ R + KY E G+ + G Sbjct: 32 RFELPEIEILIEGN----RTIIRNFRELAKAVNRDEEFFAKYLLKETGSAGNLE--GGRL 85 Query: 400 LVNGAHDTSKLAGLLENFIKKYV 468 ++ L + +F+++YV Sbjct: 86 ILQRRISPELLKSRINDFLREYV 108
>NU1M_EUPSX (Q70Y26) NADH-ubiquinone oxidoreductase chain 1 (EC 1.6.5.3) (NADH| dehydrogenase subunit 1) Length = 318 Score = 29.3 bits (64), Expect = 5.3 Identities = 15/40 (37%), Positives = 25/40 (62%) Frame = -1 Query: 320 LASAFAISTMFTIFVLMPLPRPSIFVNILGILYL*KASSL 201 LA A + ++++ MP+P P I +N LG+L++ SSL Sbjct: 73 LAPTLAFTLALSLWIPMPMPHPLINLN-LGVLFILALSSL 111
>IF2B_PYRAE (Q8ZXA6) Translation initiation factor 2 beta subunit (eIF-2-beta)| (aIF2-beta) Length = 134 Score = 28.9 bits (63), Expect = 6.9 Identities = 21/76 (27%), Positives = 32/76 (42%) Frame = +1 Query: 241 LTKIEGRGNGIKTNIVNMVDIAKALARPASYTTKYFGCELGAQSKFDEKTGIALVNGAHD 420 + KIE KT I N IAK L R + K+F EL + + ++G Sbjct: 26 IPKIEVENMPRKTIIPNFGQIAKRLNRDVYFMAKFFQKELAVPGTLE--GDVFTLHGEKS 83 Query: 421 TSKLAGLLENFIKKYV 468 + + + FI+ YV Sbjct: 84 PKVVEAVYDRFIRYYV 99 Database: uniprot_sprot.fasta Posted date: May 25, 2006 5:36 PM Number of letters in database: 80,573,946 Number of sequences in database: 219,361 Lambda K H 0.318 0.135 0.401 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 59,988,806 Number of Sequences: 219361 Number of extensions: 1083861 Number of successful extensions: 2434 Number of sequences better than 10.0: 22 Number of HSP's better than 10.0 without gapping: 2381 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 2434 length of database: 80,573,946 effective HSP length: 103 effective length of database: 57,979,763 effective search space used: 3072927439 frameshift window, decay const: 50, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits)
