ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日:2016年5月1日

Clone Information

BLAST Search Result

Clone Name bags7n09
Clone Library Name barley_pub

No. Definition Score
(bits)
E
Value
1ref|XM_633411.1| Dictyostelium discoideum hypothetical protein (... 36 5.1
2ref|XM_478772.1| Oryza sativa (japonica cultivar-group), mRNA 36 5.1
3dbj|AP008213.1| Oryza sativa (japonica cultivar-group) genomic D... 36 5.1
4dbj|AP005908.3| Oryza sativa (japonica cultivar-group) genomic D... 36 5.1
5dbj|AK065242.1| Oryza sativa (japonica cultivar-group) cDNA clon... 36 5.1
6emb|AL672284.15| Mouse DNA sequence from clone RP23-39I7 on chro... 36 5.1

>ref|XM_633411.1| Dictyostelium discoideum hypothetical protein (DDB0186084), partial
           mRNA
          Length = 1236

 Score = 36.2 bits (18), Expect = 5.1
 Identities = 22/24 (91%)
 Strand = Plus / Plus

                                   
Query: 19  gaagaaanagangaagaaaagaca 42
           ||||||| ||| ||||||||||||
Sbjct: 856 gaagaaaaagaagaagaaaagaca 879



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>ref|XM_478772.1| Oryza sativa (japonica cultivar-group),  mRNA
          Length = 1227

 Score = 36.2 bits (18), Expect = 5.1
 Identities = 23/25 (92%)
 Strand = Plus / Plus

                                    
Query: 1   ttgaggcatgccacnaatgaagaaa 25
           |||||||||||||| | ||||||||
Sbjct: 308 ttgaggcatgccactattgaagaaa 332



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>dbj|AP008213.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 7, complete
                sequence
          Length = 29644043

 Score = 36.2 bits (18), Expect = 5.1
 Identities = 23/25 (92%)
 Strand = Plus / Plus

                                         
Query: 1        ttgaggcatgccacnaatgaagaaa 25
                |||||||||||||| | ||||||||
Sbjct: 22951211 ttgaggcatgccactattgaagaaa 22951235



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>dbj|AP005908.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 7, BAC
             clone:OJ1121_A05
          Length = 172668

 Score = 36.2 bits (18), Expect = 5.1
 Identities = 23/25 (92%)
 Strand = Plus / Plus

                                      
Query: 1     ttgaggcatgccacnaatgaagaaa 25
             |||||||||||||| | ||||||||
Sbjct: 26425 ttgaggcatgccactattgaagaaa 26449



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>dbj|AK065242.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013002I12, full
           insert sequence
          Length = 1226

 Score = 36.2 bits (18), Expect = 5.1
 Identities = 23/25 (92%)
 Strand = Plus / Plus

                                    
Query: 1   ttgaggcatgccacnaatgaagaaa 25
           |||||||||||||| | ||||||||
Sbjct: 308 ttgaggcatgccactattgaagaaa 332



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>emb|AL672284.15| Mouse DNA sequence from clone RP23-39I7 on chromosome X, complete
             sequence
          Length = 227918

 Score = 36.2 bits (18), Expect = 5.1
 Identities = 22/24 (91%)
 Strand = Plus / Minus

                                     
Query: 19    gaagaaanagangaagaaaagaca 42
             ||||||| ||| ||||||||||||
Sbjct: 19543 gaagaaatagaagaagaaaagaca 19520


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 119,641
Number of Sequences: 3902068
Number of extensions: 119641
Number of successful extensions: 32141
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 6
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 32120
Number of HSP's gapped (non-prelim): 21
length of query: 43
length of database: 17,233,045,268
effective HSP length: 20
effective length of query: 23
effective length of database: 17,155,003,908
effective search space: 394565089884
effective search space used: 394565089884
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 18 (36.2 bits)
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