ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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| Clone Name | bags8b24 |
|---|---|
| Clone Library Name | barley_pub |
>HPSE3_ARATH (Q9FZP1) Heparanase-like protein 3 precursor (EC 3.2.-.-)| Length = 536 Score = 219 bits (557), Expect(2) = 3e-57 Identities = 102/171 (59%), Positives = 128/171 (74%), Gaps = 2/171 (1%) Frame = +1 Query: 91 GPWDYTNAASFIQYTVSKGYDIYGWELGNELSGSGVGTRVGADQYAADVINLNQVVDKAY 270 G W+YTNA SFI++T Y I GWELGNEL GSGVG RVGA+QYA D INL +V++ Y Sbjct: 173 GAWNYTNAESFIRFTAENNYTIDGWELGNELCGSGVGARVGANQYAIDTINLRNIVNRVY 232 Query: 271 QGSKP--LVIAPGGFFDAGWFTELVAKTKPNQMDVITHHIYNLGPGVDTHLVEKILNPSY 444 + P LVI PGGFF+ WFTE + K + N ++ T HIY+LGPGVD HL+EKILNPSY Sbjct: 233 KNVSPMPLVIGPGGFFEVDWFTEYLNKAE-NSLNATTRHIYDLGPGVDEHLIEKILNPSY 291 Query: 445 LDNMVSTFSNLQGILKSAGTATTAWVGEAGGAYNSGHHLVTDAFVFSFWYL 597 LD +F +L+ I+K++ T AWVGE+GGAYNSG +LV++AFV+SFWYL Sbjct: 292 LDQEAKSFRSLKNIIKNSSTKAVAWVGESGGAYNSGRNLVSNAFVYSFWYL 342 Score = 23.1 bits (48), Expect(2) = 3e-57 Identities = 8/11 (72%), Positives = 11/11 (100%) Frame = +3 Query: 30 IVFGLNALNGR 62 ++FGLNAL+GR Sbjct: 153 VIFGLNALSGR 163
>HPSE2_ARATH (Q8L608) Heparanase-like protein 2 precursor (EC 3.2.-.-)| Length = 539 Score = 194 bits (494), Expect(2) = 1e-49 Identities = 90/173 (52%), Positives = 116/173 (67%), Gaps = 2/173 (1%) Frame = +1 Query: 85 WXGPWDYTNAASFIQYTVSKGYDIYGWELGNELSGSGVGTRVGADQYAADVINLNQVVDK 264 W G WD+TN F+ YTVSKGY I WE GNELSGSG+ V + Y D+I L V+ Sbjct: 167 WGGDWDHTNTQDFMNYTVSKGYAIDSWEFGNELSGSGIWASVSVELYGKDLIVLKNVIKN 226 Query: 265 AYQGS--KPLVIAPGGFFDAGWFTELVAKTKPNQMDVITHHIYNLGPGVDTHLVEKILNP 438 Y+ S KPLV+APGGFF+ W++EL+ + P +DV+THHIYNLGPG D LV KIL+P Sbjct: 227 VYKNSRTKPLVVAPGGFFEEQWYSELLRLSGPGVLDVLTHHIYNLGPGNDPKLVNKILDP 286 Query: 439 SYLDNMVSTFSNLQGILKSAGTATTAWVGEAGGAYNSGHHLVTDAFVFSFWYL 597 +YL + F+N+ ++ G AWVGEAGGA+NSG V++ F+ SFWYL Sbjct: 287 NYLSGISELFANVNQTIQEHGPWAAAWVGEAGGAFNSGGRQVSETFINSFWYL 339 Score = 21.9 bits (45), Expect(2) = 1e-49 Identities = 8/11 (72%), Positives = 10/11 (90%) Frame = +3 Query: 30 IVFGLNALNGR 62 + FGLNAL+GR Sbjct: 149 VTFGLNALHGR 159
>HPSE1_ARATH (Q9FF10) Heparanase-like protein 1 precursor (EC 3.2.-.-)| Length = 543 Score = 194 bits (492), Expect(2) = 2e-49 Identities = 89/174 (51%), Positives = 120/174 (68%), Gaps = 3/174 (1%) Frame = +1 Query: 85 WXGPWDYTNAASFIQYTVSKGYDIYGWELGNELSGSGVGTRVGADQYAADVINLNQVVDK 264 W G WD+ N F+ YTVSKGY I WE GNELSGSGVG V A+ Y D+I L V++K Sbjct: 170 WGGAWDHINTQDFLNYTVSKGYVIDSWEFGNELSGSGVGASVSAELYGKDLIVLKDVINK 229 Query: 265 AYQGS---KPLVIAPGGFFDAGWFTELVAKTKPNQMDVITHHIYNLGPGVDTHLVEKILN 435 Y+ S KP+++APGGF++ W+T+L+ + P+ +DV+THHIYNLG G D LV+KI++ Sbjct: 230 VYKNSWLHKPILVAPGGFYEQQWYTKLLEISGPSVVDVVTHHIYNLGSGNDPALVKKIMD 289 Query: 436 PSYLDNMVSTFSNLQGILKSAGTATTAWVGEAGGAYNSGHHLVTDAFVFSFWYL 597 PSYL + TF ++ ++ G + WVGE+GGAYNSG V+D F+ SFWYL Sbjct: 290 PSYLSQVSKTFKDVNQTIQEHGPWASPWVGESGGAYNSGGRHVSDTFIDSFWYL 343 Score = 21.6 bits (44), Expect(2) = 2e-49 Identities = 8/11 (72%), Positives = 9/11 (81%) Frame = +3 Query: 30 IVFGLNALNGR 62 + FGLNAL GR Sbjct: 152 VTFGLNALRGR 162
>HPSE_HUMAN (Q9Y251) Heparanase precursor (EC 3.2.-.-) (Heparanase-1) (Hpa1)| (Endo-glucoronidase) [Contains: Heparanase 8 kDa subunit; Heparanase 50 kDa subunit] Length = 543 Score = 64.7 bits (156), Expect = 2e-10 Identities = 50/173 (28%), Positives = 77/173 (44%), Gaps = 6/173 (3%) Frame = +1 Query: 97 WDYTNAASFIQYTVSKGYDIYGWELGNELSG--SGVGTRVGADQYAADVINLNQVVDKA- 267 W+ +NA + Y SKGY+I WELGNE + + Q D I L++++ K+ Sbjct: 199 WNSSNAQLLLDYCSSKGYNI-SWELGNEPNSFLKKADIFINGSQLGEDFIQLHKLLRKST 257 Query: 268 YQGSK---PLVIAPGGFFDAGWFTELVAKTKPNQMDVITHHIYNLGPGVDTHLVEKILNP 438 ++ +K P V P + K +D +T H Y L T E LNP Sbjct: 258 FKNAKLYGPDVGQPRR--KTAKMLKSFLKAGGEVIDSVTWHHYYLNGRTATR--EDFLNP 313 Query: 439 SYLDNMVSTFSNLQGILKSAGTATTAWVGEAGGAYNSGHHLVTDAFVFSFWYL 597 LD +S+ + +++S W+GE AY G L++D F F +L Sbjct: 314 DVLDIFISSVQKVFQVVESTRPGKKVWLGETSSAYGGGAPLLSDTFAAGFMWL 366
>HPSE_RAT (Q71RP1) Heparanase precursor (EC 3.2.-.-) (Endo-glucoronidase)| [Contains: Heparanase 8 kDa subunit; Heparanase 50 kDa subunit] Length = 536 Score = 64.7 bits (156), Expect = 2e-10 Identities = 50/173 (28%), Positives = 77/173 (44%), Gaps = 6/173 (3%) Frame = +1 Query: 97 WDYTNAASFIQYTVSKGYDIYGWELGNELSGSGVGTRVGAD--QYAADVINLNQVVDK-A 267 W+ +NA + Y SKGY+I WELGNE + + D Q D + L++++ K A Sbjct: 192 WNSSNAQLLLNYCSSKGYNI-SWELGNEPNSFWKKAHISIDGLQLGEDFVELHKLLQKSA 250 Query: 268 YQGSKPLVIAPGGFFDAGWFTELVA---KTKPNQMDVITHHIYNLGPGVDTHLVEKILNP 438 +Q +K + P G +L+ K +D +T H Y L V T E L+ Sbjct: 251 FQNAK--LYGPDIGQPRGKTVKLLRSFLKAGGEVIDSLTWHHYYLNGRVATK--EDFLSS 306 Query: 439 SYLDNMVSTFSNLQGILKSAGTATTAWVGEAGGAYNSGHHLVTDAFVFSFWYL 597 LD + + + + K W+GE AY G L++D F F +L Sbjct: 307 DVLDTFILSVQKILKVTKEMTPGKKVWLGETSSAYGGGAPLLSDTFAAGFMWL 359
>HPSE_MOUSE (Q6YGZ1) Heparanase precursor (EC 3.2.-.-) (Endo-glucoronidase)| [Contains: Heparanase 8 kDa subunit; Heparanase 50 kDa subunit] Length = 535 Score = 59.7 bits (143), Expect = 6e-09 Identities = 46/173 (26%), Positives = 74/173 (42%), Gaps = 6/173 (3%) Frame = +1 Query: 97 WDYTNAASFIQYTVSKGYDIYGWELGNELSG--SGVGTRVGADQYAADVINLNQVVDK-A 267 W+ +NA + Y SKGY+I WELGNE + + Q D + L++++ + A Sbjct: 191 WNSSNAQLLLDYCSSKGYNI-SWELGNEPNSFWKKAHILINGSQLGEDFVELHKLLQRSA 249 Query: 268 YQGSK---PLVIAPGGFFDAGWFTELVAKTKPNQMDVITHHIYNLGPGVDTHLVEKILNP 438 +Q +K P + P G K +D +T H Y L + T E L+ Sbjct: 250 FQNAKLYGPDIGQPRG--KTVKLLRSFLKAGGEVIDSLTWHHYYLNGRIATK--EDFLSS 305 Query: 439 SYLDNMVSTFSNLQGILKSAGTATTAWVGEAGGAYNSGHHLVTDAFVFSFWYL 597 LD + + + + K W+GE AY G L+++ F F +L Sbjct: 306 DVLDTFILSVQKILKVTKEITPGKKVWLGETSSAYGGGAPLLSNTFAAGFMWL 358
>HPSE_BOVIN (Q9MYY0) Heparanase precursor (EC 3.2.-.-) [Contains: Heparanase 8| kDa subunit; Heparanase 50 kDa subunit] Length = 545 Score = 58.5 bits (140), Expect = 1e-08 Identities = 51/198 (25%), Positives = 83/198 (41%), Gaps = 6/198 (3%) Frame = +1 Query: 22 CTXLSLG*MR*MAGSQCLMAPWXGPWDYTNAASFIQYTVSKGYDIYGWELGNELSG--SG 195 C+ L+L + G L+ WD +NA + Y SK Y+I WELGNE + Sbjct: 181 CSGLNL-----IFGVNALLRTTDMHWDSSNAQLLLDYCSSKNYNI-SWELGNEPNSFQRK 234 Query: 196 VGTRVGADQYAADVINLNQVVDK-AYQGSK---PLVIAPGGFFDAGWFTELVAKTKPNQM 363 G + Q D I +++ K A++ +K P + P + + K + Sbjct: 235 AGIFINGRQLGEDFIEFRKLLGKSAFKNAKLYGPDIGQPRR--NTVKMLKSFLKAGGEVI 292 Query: 364 DVITHHIYNLGPGVDTHLVEKILNPSYLDNMVSTFSNLQGILKSAGTATTAWVGEAGGAY 543 D +T H Y + + T E LNP LD +S+ I++ W+GE A+ Sbjct: 293 DSVTWHHYYVNGRIATK--EDFLNPDILDTFISSVQKTLRIVEKIRPLKKVWLGETSSAF 350 Query: 544 NSGHHLVTDAFVFSFWYL 597 G +++ F F +L Sbjct: 351 GGGAPFLSNTFAAGFMWL 368
>HPSE_CHICK (Q90YK5) Heparanase precursor (EC 3.2.-.-)| Length = 523 Score = 57.0 bits (136), Expect = 4e-08 Identities = 43/172 (25%), Positives = 76/172 (44%), Gaps = 5/172 (2%) Frame = +1 Query: 97 WDYTNAASFIQYTVSKGYDIYGWELGNELSG--SGVGTRVGADQYAADVINLNQVVDK-- 264 WD +NA + Y + Y+I WELGNE + G + Q D ++L Q++ + Sbjct: 178 WDSSNAKQLLGYCAQRSYNI-SWELGNEPNSFRKKSGICIDGFQLGRDFVHLRQLLSQHP 236 Query: 265 AYQGSKPLVIAPGG-FFDAGWFTELVAKTKPNQMDVITHHIYNLGPGVDTHLVEKILNPS 441 Y+ ++ + G K+ +D +T H Y + T E L+P Sbjct: 237 LYRHAELYGLDVGQPRKHTQHLLRSFMKSGGKAIDSVTWHHYYVNGRSATR--EDFLSPE 294 Query: 442 YLDNMVSTFSNLQGILKSAGTATTAWVGEAGGAYNSGHHLVTDAFVFSFWYL 597 LD+ + ++ GI+++ W+GE G AY G +++ +V F +L Sbjct: 295 VLDSFATAIHDVLGIVEATVPGKKVWLGETGSAYGGGAPQLSNTYVAGFMWL 346
>TENA_PIG (Q29116) Tenascin precursor (TN) (Hexabrachion) (Cytotactin)| (Neuronectin) (GMEM) (JI) (Miotendinous antigen) (Glioma-associated-extracellular matrix antigen) (GP 150-225) (Tenascin-C) (TN-C) (P230) Length = 1746 Score = 32.0 bits (71), Expect = 1.4 Identities = 21/56 (37%), Positives = 27/56 (48%), Gaps = 1/56 (1%) Frame = -1 Query: 559 GGGHCCKPLQLRRPTRWWLSLRTSVSPEGC-*TCLPYYQGKTG*EFSQPDACQHRG 395 G G C +P + R TR + S R + S EGC C P ++G E P C RG Sbjct: 143 GAGCCLQPAEGRLDTRPFCSGRGNFSTEGCGCVCEPGWKGPNCSEPECPSNCHLRG 198
>GDS1A_XENLA (O93614) Rap1 GTPase-GDP dissociation stimulator 1-A (RalB-binding| protein-A) (Rap1gds1-A protein) (smgGDS-A) (XsmgGDS-A) Length = 607 Score = 31.2 bits (69), Expect = 2.4 Identities = 18/51 (35%), Positives = 27/51 (52%) Frame = -2 Query: 249 VQVDHIRGILICTDPSTNSTATEFVSKLPAIDIISLADSVLDERSSIGVIP 97 + VDH+R + TDPS+ T F L ++ S DS+ + +GVIP Sbjct: 135 IVVDHLRSMCTLTDPSSEKLMTVFCGML--MNYSSENDSLQTQLIQMGVIP 183
>CNG14_ARATH (Q9SJA4) Putative cyclic nucleotide-gated ion channel 14 (Cyclic| nucleotide-and calmodulin-regulated ion channel 14) Length = 726 Score = 30.8 bits (68), Expect = 3.1 Identities = 20/64 (31%), Positives = 31/64 (48%), Gaps = 1/64 (1%) Frame = +1 Query: 409 THLVEKILNPSYLDNMVSTFSNLQGILKSAGTATT-AWVGEAGGAYNSGHHLVTDAFVFS 585 T+ + I+ Y+ + F I+K+ G TT AW AG AYN +++ + S Sbjct: 209 TNALVLIVLVQYIPRLYLIFPLSAEIIKATGVVTTTAW---AGAAYNLLQYMLASHILGS 265 Query: 586 FWYL 597 WYL Sbjct: 266 AWYL 269
>TENA_HUMAN (P24821) Tenascin precursor (TN) (Hexabrachion) (Cytotactin)| (Neuronectin) (GMEM) (JI) (Miotendinous antigen) (Glioma-associated-extracellular matrix antigen) (GP 150-225) (Tenascin-C) (TN-C) Length = 2201 Score = 30.4 bits (67), Expect = 4.0 Identities = 21/56 (37%), Positives = 26/56 (46%), Gaps = 1/56 (1%) Frame = -1 Query: 559 GGGHCCKPLQLRRPTRWWLSLRTSVSPEGC-*TCLPYYQGKTG*EFSQPDACQHRG 395 G G C +P R TR + S R + S EGC C P ++G E P C RG Sbjct: 143 GAGCCLQPATGRLDTRPFCSGRGNFSTEGCGCVCEPGWKGPNCSEPECPGNCHLRG 198
>TRBE_AGRTU (P54910) Conjugal transfer protein trbE precursor| Length = 820 Score = 30.0 bits (66), Expect = 5.3 Identities = 12/47 (25%), Positives = 25/47 (53%) Frame = -2 Query: 201 TNSTATEFVSKLPAIDIISLADSVLDERSSIGVIPWSXPWSHQALGP 61 T + F+S LP + ++ + +++ R+ +IP + WS A+ P Sbjct: 380 TLNATDAFLSSLPGVSYANIREPLINTRNLADLIPLNSVWSGSAVAP 426
>PPNK_SHEON (Q8EGS1) Probable inorganic polyphosphate/ATP-NAD kinase (EC| 2.7.1.23) (Poly(P)/ATP NAD kinase) Length = 309 Score = 29.6 bits (65), Expect = 6.9 Identities = 17/50 (34%), Positives = 25/50 (50%) Frame = +1 Query: 391 LGPGVDTHLVEKILNPSYLDNMVSTFSNLQGILKSAGTATTAWVGEAGGA 540 L PG H++E + Y+DN G++ S T +TA+ AGGA Sbjct: 167 LHPGKIAHMIEFEV---YIDNQFMYSQRADGMIVSTPTGSTAYALSAGGA 213
>GDS1B_XENLA (Q5PPZ9) Rap1 GTPase-GDP dissociation stimulator 1-B (RalB-binding| protein-B) (Rap1gds1-B protein) (smgGDS-B) (XsmgGDS-B) Length = 607 Score = 29.6 bits (65), Expect = 6.9 Identities = 18/51 (35%), Positives = 26/51 (50%) Frame = -2 Query: 249 VQVDHIRGILICTDPSTNSTATEFVSKLPAIDIISLADSVLDERSSIGVIP 97 + VDH+R TDPS+ T F L ++ S DS+ + +GVIP Sbjct: 135 IVVDHLRSRCTLTDPSSEKLMTVFCGML--MNYSSENDSLQTQLIQMGVIP 183
>BIOB_ECOLI (P12996) Biotin synthase (EC 2.8.1.6) (Biotin synthetase)| Length = 346 Score = 29.6 bits (65), Expect = 6.9 Identities = 21/69 (30%), Positives = 31/69 (44%) Frame = -1 Query: 505 LSLRTSVSPEGC*TCLPYYQGKTG*EFSQPDACQHRGLNCRYGE*SHPSGSALFWLRAR* 326 LS++T PE C C + KTG E + + + R + +GS F + A Sbjct: 46 LSIKTGACPEDCKYCPQSSRYKTGLEAERLMEVEQVLESARKAK---AAGSTRFCMGAAW 102 Query: 325 TNPHRRSLP 299 NPH R +P Sbjct: 103 KNPHERDMP 111
>DOCK2_HUMAN (Q92608) Dedicator of cytokinesis protein 2| Length = 1830 Score = 29.3 bits (64), Expect = 9.0 Identities = 28/90 (31%), Positives = 37/90 (41%), Gaps = 11/90 (12%) Frame = +1 Query: 244 LNQVVDKAYQGSKPLVIAPGGF--FDAGWFTELVAKTKPNQMDVITH-------HIYNLG 396 LN +VD A G GF ++ +FTE + P D +TH I LG Sbjct: 1531 LNGIVDPAVMG---------GFAKYEKAFFTEEYVRDHPEDQDKLTHLKDLIAWQIPFLG 1581 Query: 397 PGVDTH--LVEKILNPSYLDNMVSTFSNLQ 480 G+ H V L P + D M F NL+ Sbjct: 1582 AGIKIHEKRVSDNLRP-FHDRMEECFKNLK 1610
>BIOB_SERMA (P36569) Biotin synthase (EC 2.8.1.6) (Biotin synthetase)| Length = 346 Score = 29.3 bits (64), Expect = 9.0 Identities = 21/69 (30%), Positives = 31/69 (44%) Frame = -1 Query: 505 LSLRTSVSPEGC*TCLPYYQGKTG*EFSQPDACQHRGLNCRYGE*SHPSGSALFWLRAR* 326 LS++T PE C C + KTG E + + + R + +GS F + A Sbjct: 47 LSIKTGACPEDCKYCPQSPRYKTGLESERLMQVEQVLESARKAK---ANGSTRFCMGAAW 103 Query: 325 TNPHRRSLP 299 NPH R +P Sbjct: 104 KNPHERDMP 112 Database: uniprot_sprot.fasta Posted date: May 25, 2006 5:36 PM Number of letters in database: 80,573,946 Number of sequences in database: 219,361 Lambda K H 0.318 0.135 0.401 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 94,862,347 Number of Sequences: 219361 Number of extensions: 2160686 Number of successful extensions: 6038 Number of sequences better than 10.0: 18 Number of HSP's better than 10.0 without gapping: 5814 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 6027 length of database: 80,573,946 effective HSP length: 107 effective length of database: 57,102,319 effective search space used: 5196311029 frameshift window, decay const: 50, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits)
