Clone Information

BLAST Search Result

Clone Name	bags7m22
Clone Library Name	barley_pub

No.	Definition	Score (bits)	E Value
1	GDIA_BOVIN (P21856) Rab GDP dissociation inhibitor alpha (Rab GD...	238	1e-62
2	GDIA_RAT (P50398) Rab GDP dissociation inhibitor alpha (Rab GDI ...	238	1e-62
3	GDIA_CANFA (O97555) Rab GDP dissociation inhibitor alpha (Rab GD...	238	1e-62
4	GDIA_PONPY (Q7YQM0) Rab GDP dissociation inhibitor alpha (Rab GD...	236	3e-62
5	GDIA_PANTR (P60028) Rab GDP dissociation inhibitor alpha (Rab GD...	236	3e-62
6	GDIA_MACFA (Q8HXX7) Rab GDP dissociation inhibitor alpha (Rab GD...	236	3e-62
7	GDIA_HUMAN (P31150) Rab GDP dissociation inhibitor alpha (Rab GD...	236	3e-62
8	GDIA_MOUSE (P50396) Rab GDP dissociation inhibitor alpha (Rab GD...	236	4e-62
9	GDIB_MOUSE (Q61598) Rab GDP dissociation inhibitor beta (Rab GDI...	228	1e-59
10	GDIB_HUMAN (P50395) Rab GDP dissociation inhibitor beta (Rab GDI...	226	3e-59
11	GDIB_CANFA (O97556) Rab GDP dissociation inhibitor beta (Rab GDI...	226	3e-59
12	GDIB_PONPY (Q5RCE1) Rab GDP dissociation inhibitor beta (Rab GDI...	225	7e-59
13	GDIB_BOVIN (P50397) Rab GDP dissociation inhibitor beta (Rab GDI...	223	3e-58
14	GDI1_SCHPO (Q10305) Probable secretory pathway GDP dissociation ...	223	3e-58
15	GDIB_PIG (Q6Q7J2) Rab GDP dissociation inhibitor beta (Rab GDI b...	221	2e-57
16	GDIB_RAT (P50399) Rab GDP dissociation inhibitor beta (Rab GDI b...	217	2e-56
17	GDI1_YEAST (P39958) Rab GDP-dissociation inhibitor (Rab GDI) (Se...	199	4e-51
18	RABEP_DROME (Q9V8W3) Rab proteins geranylgeranyltransferase comp...	74	3e-13
19	RAE2_MOUSE (Q9QZD5) Rab proteins geranylgeranyltransferase compo...	64	3e-10
20	RAE2_HUMAN (P26374) Rab proteins geranylgeranyltransferase compo...	63	6e-10
21	RAE1_RAT (P37727) Rab proteins geranylgeranyltransferase compone...	62	2e-09
22	RAE1_MOUSE (Q9QXG2) Rab proteins geranylgeranyltransferase compo...	61	3e-09
23	RAE1_HUMAN (P24386) Rab proteins geranylgeranyltransferase compo...	57	3e-08
24	RAEP_YEAST (P32864) Rab proteins geranylgeranyltransferase compo...	41	0.003
25	PRKDC_CANFA (Q8WN22) DNA-dependent protein kinase catalytic subu...	33	0.87
26	TTDT_ECOLI (P39414) Putative tartrate carrier (Tartrate transpor...	32	1.5
27	RAEP_CANAL (O93831) Rab proteins geranylgeranyltransferase compo...	31	2.5
28	RT02_PROWI (P46741) Mitochondrial ribosomal protein S2	31	2.5
29	CATB_HUMAN (P07858) Cathepsin B precursor (EC 3.4.22.1) (Catheps...	30	5.7
30	MALK_VIBPA (Q87GB5) Maltose/maltodextrin import ATP-binding prot...	30	5.7
31	S6A12_RAT (P48056) Sodium- and chloride-dependent betaine transp...	30	5.7
32	ACDA2_METTE (Q9C4Z4) Acetyl-CoA decarbonylase/synthase complex a...	30	7.4
33	YETS4_MOUSE (Q9CR11) YEATS domain-containing protein 4	29	9.7
34	YETS4_HUMAN (O95619) YEATS domain-containing protein 4 (Glioma-a...	29	9.7
35	POLG_LANVT (P29837) Genome polyprotein [Contains: Capsid protein...	29	9.7
36	MURC_AQUAE (O67373) UDP-N-acetylmuramate--L-alanine ligase (EC 6...	29	9.7
37	CITT_ECOLI (P0AE74) Citrate carrier (Citrate transporter) (Citra...	29	9.7
38	CITT_ECO57 (P0AE75) Citrate carrier (Citrate transporter) (Citra...	29	9.7
39	POLG_LANVY (P29838) Genome polyprotein [Contains: Capsid protein...	29	9.7

>GDIA_BOVIN (P21856) Rab GDP dissociation inhibitor alpha (Rab GDI alpha)|
           (Guanosine diphosphate dissociation inhibitor 1) (GDI-1)
           (SMG p25A GDI)
          Length = 447

 Score =  238 bits (607), Expect = 1e-62
 Identities = 116/204 (56%), Positives = 152/204 (74%)
 Frame = +3

Query: 6   RLKLYSXSLARFQGGSPYIYPLYGLGELPQGFARLSAVYGGTYMLCKPECKVEFDMEGKA 185
           R+KLYS SLAR+ G SPY+YPLYGLGELPQGFARLSA+YGGTYML KP   +  +  GK 
Sbjct: 208 RIKLYSESLARY-GKSPYLYPLYGLGELPQGFARLSAIYGGTYMLNKPVDDIIME-NGKV 265

Query: 186 CGVTSEGETAKCKKVVCDPSYLTNKVRKIGKVARAIAIMSHPIPNTNESHSVQIILPQKQ 365
            GV SEGE A+CK+++CDPSY+ ++VRK G+V R I I+SHPI NTN+++S QII+PQ Q
Sbjct: 266 VGVKSEGEVARCKQLICDPSYVPDRVRKAGQVIRIICILSHPIKNTNDANSCQIIIPQNQ 325

Query: 366 LGRNSDMYVFCCSYTHNVAPKGKFIAFVSAEAESDNIQSELKPGIDLLGPVDELFFDMYD 545
           + R SD+YV   SY HNVA +GK+IA  S   E+ + + E++P ++LL P+D+ F  + D
Sbjct: 326 VNRKSDIYVCMISYAHNVAAQGKYIAIASTTVETTDPEKEVEPALELLEPIDQKFVAISD 385

Query: 546 RYEPVNEPSLDNCFISTSYDATTH 617
            YEP+++ S    F S SYDATTH
Sbjct: 386 LYEPIDDGSESQVFCSCSYDATTH 409

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>GDIA_RAT (P50398) Rab GDP dissociation inhibitor alpha (Rab GDI alpha)|
           (Guanosine diphosphate dissociation inhibitor 1) (GDI-1)
          Length = 447

 Score =  238 bits (606), Expect = 1e-62
 Identities = 116/204 (56%), Positives = 151/204 (74%)
 Frame = +3

Query: 6   RLKLYSXSLARFQGGSPYIYPLYGLGELPQGFARLSAVYGGTYMLCKPECKVEFDMEGKA 185
           R+KLYS SLAR+ G SPY+YPLYGLGELPQGFARLSA+YGGTYML KP   +  +  GK 
Sbjct: 208 RIKLYSESLARY-GKSPYLYPLYGLGELPQGFARLSAIYGGTYMLNKPVDDIIME-NGKV 265

Query: 186 CGVTSEGETAKCKKVVCDPSYLTNKVRKIGKVARAIAIMSHPIPNTNESHSVQIILPQKQ 365
            GV SEGE A+CK+++CDPSY+ ++VRK G+V R I I+SHPI NTN+++S QII+PQ Q
Sbjct: 266 VGVKSEGEVARCKQLICDPSYIPDRVRKAGQVIRIICILSHPIKNTNDANSCQIIIPQNQ 325

Query: 366 LGRNSDMYVFCCSYTHNVAPKGKFIAFVSAEAESDNIQSELKPGIDLLGPVDELFFDMYD 545
           + R SD+YV   SY HNVA +GK+IA  S   E+   + E++P ++LL P+D+ F  + D
Sbjct: 326 VNRKSDIYVCMISYAHNVAAQGKYIAIASTTVETAEPEKEVEPALELLEPIDQKFVAISD 385

Query: 546 RYEPVNEPSLDNCFISTSYDATTH 617
            YEP+++ S    F S SYDATTH
Sbjct: 386 LYEPIDDGSESQVFCSCSYDATTH 409

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>GDIA_CANFA (O97555) Rab GDP dissociation inhibitor alpha (Rab GDI alpha)|
           (Guanosine diphosphate dissociation inhibitor 1) (GDI-1)
          Length = 447

 Score =  238 bits (606), Expect = 1e-62
 Identities = 116/204 (56%), Positives = 151/204 (74%)
 Frame = +3

Query: 6   RLKLYSXSLARFQGGSPYIYPLYGLGELPQGFARLSAVYGGTYMLCKPECKVEFDMEGKA 185
           R+KLYS SLAR+ G SPY+YPLYGLGELPQGFARLSA+YGGTYML KP   +  +  GK 
Sbjct: 208 RIKLYSESLARY-GKSPYLYPLYGLGELPQGFARLSAIYGGTYMLNKPVDDIIME-NGKV 265

Query: 186 CGVTSEGETAKCKKVVCDPSYLTNKVRKIGKVARAIAIMSHPIPNTNESHSVQIILPQKQ 365
            GV SEGE A+CK+++CDPSY+ ++VRK G+V R I I+SHPI NTN+++S QII+PQ Q
Sbjct: 266 VGVKSEGEVARCKQLICDPSYIPDRVRKAGQVIRIICILSHPIKNTNDANSCQIIIPQNQ 325

Query: 366 LGRNSDMYVFCCSYTHNVAPKGKFIAFVSAEAESDNIQSELKPGIDLLGPVDELFFDMYD 545
           + R SD+YV   SY HNVA +GK+IA  S   E+   + E++P ++LL P+D+ F  + D
Sbjct: 326 VNRKSDIYVCMISYAHNVAAQGKYIAIASTTVETAEPEKEVEPALELLEPIDQKFVAISD 385

Query: 546 RYEPVNEPSLDNCFISTSYDATTH 617
            YEP+++ S    F S SYDATTH
Sbjct: 386 LYEPIDDGSESQVFCSCSYDATTH 409

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>GDIA_PONPY (Q7YQM0) Rab GDP dissociation inhibitor alpha (Rab GDI alpha)|
           (Guanosine diphosphate dissociation inhibitor 1) (GDI-1)
          Length = 447

 Score =  236 bits (603), Expect = 3e-62
 Identities = 115/204 (56%), Positives = 151/204 (74%)
 Frame = +3

Query: 6   RLKLYSXSLARFQGGSPYIYPLYGLGELPQGFARLSAVYGGTYMLCKPECKVEFDMEGKA 185
           R+KLYS SLAR+ G SPY+YPLYGLGELPQGFARLSA+YGGTYML KP   +  +  GK 
Sbjct: 208 RIKLYSESLARY-GKSPYLYPLYGLGELPQGFARLSAIYGGTYMLNKPVDDIIME-NGKV 265

Query: 186 CGVTSEGETAKCKKVVCDPSYLTNKVRKIGKVARAIAIMSHPIPNTNESHSVQIILPQKQ 365
            GV SEGE A+CK+++CDPSY+ ++VRK G+V R I I+SHPI NTN+++S QII+PQ Q
Sbjct: 266 VGVKSEGEVARCKQLICDPSYIPDRVRKAGQVIRIICILSHPIKNTNDANSCQIIIPQNQ 325

Query: 366 LGRNSDMYVFCCSYTHNVAPKGKFIAFVSAEAESDNIQSELKPGIDLLGPVDELFFDMYD 545
           + R SD+YV   SY HNVA +GK+IA  S   E+ + + E++P ++LL P+D+ F  + D
Sbjct: 326 VNRKSDIYVCMISYAHNVAAQGKYIAIASTTVETTDPEKEVEPALELLEPIDQKFVAISD 385

Query: 546 RYEPVNEPSLDNCFISTSYDATTH 617
            YEP+++      F S SYDATTH
Sbjct: 386 LYEPIDDGCESQVFCSCSYDATTH 409

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>GDIA_PANTR (P60028) Rab GDP dissociation inhibitor alpha (Rab GDI alpha)|
           (Guanosine diphosphate dissociation inhibitor 1) (GDI-1)
          Length = 447

 Score =  236 bits (603), Expect = 3e-62
 Identities = 115/204 (56%), Positives = 151/204 (74%)
 Frame = +3

Query: 6   RLKLYSXSLARFQGGSPYIYPLYGLGELPQGFARLSAVYGGTYMLCKPECKVEFDMEGKA 185
           R+KLYS SLAR+ G SPY+YPLYGLGELPQGFARLSA+YGGTYML KP   +  +  GK 
Sbjct: 208 RIKLYSESLARY-GKSPYLYPLYGLGELPQGFARLSAIYGGTYMLNKPVDDIIME-NGKV 265

Query: 186 CGVTSEGETAKCKKVVCDPSYLTNKVRKIGKVARAIAIMSHPIPNTNESHSVQIILPQKQ 365
            GV SEGE A+CK+++CDPSY+ ++VRK G+V R I I+SHPI NTN+++S QII+PQ Q
Sbjct: 266 VGVKSEGEVARCKQLICDPSYIPDRVRKAGQVIRIICILSHPIKNTNDANSCQIIIPQNQ 325

Query: 366 LGRNSDMYVFCCSYTHNVAPKGKFIAFVSAEAESDNIQSELKPGIDLLGPVDELFFDMYD 545
           + R SD+YV   SY HNVA +GK+IA  S   E+ + + E++P ++LL P+D+ F  + D
Sbjct: 326 VNRKSDIYVCMISYAHNVAAQGKYIAIASTTVETTDPEKEVEPALELLEPIDQKFVAISD 385

Query: 546 RYEPVNEPSLDNCFISTSYDATTH 617
            YEP+++      F S SYDATTH
Sbjct: 386 LYEPIDDGCESQVFCSCSYDATTH 409

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>GDIA_MACFA (Q8HXX7) Rab GDP dissociation inhibitor alpha (Rab GDI alpha)|
           (Guanosine diphosphate dissociation inhibitor 1) (GDI-1)
          Length = 447

 Score =  236 bits (603), Expect = 3e-62
 Identities = 115/204 (56%), Positives = 151/204 (74%)
 Frame = +3

Query: 6   RLKLYSXSLARFQGGSPYIYPLYGLGELPQGFARLSAVYGGTYMLCKPECKVEFDMEGKA 185
           R+KLYS SLAR+ G SPY+YPLYGLGELPQGFARLSA+YGGTYML KP   +  +  GK 
Sbjct: 208 RIKLYSESLARY-GKSPYLYPLYGLGELPQGFARLSAIYGGTYMLNKPVDDIIME-NGKV 265

Query: 186 CGVTSEGETAKCKKVVCDPSYLTNKVRKIGKVARAIAIMSHPIPNTNESHSVQIILPQKQ 365
            GV SEGE A+CK+++CDPSY+ ++VRK G+V R I I+SHPI NTN+++S QII+PQ Q
Sbjct: 266 VGVKSEGEVARCKQLICDPSYIPDRVRKAGQVIRIICILSHPIKNTNDANSCQIIIPQNQ 325

Query: 366 LGRNSDMYVFCCSYTHNVAPKGKFIAFVSAEAESDNIQSELKPGIDLLGPVDELFFDMYD 545
           + R SD+YV   SY HNVA +GK+IA  S   E+ + + E++P ++LL P+D+ F  + D
Sbjct: 326 VNRKSDIYVCMISYAHNVAAQGKYIAIASTTVETTDPEKEVEPALELLEPIDQKFVAISD 385

Query: 546 RYEPVNEPSLDNCFISTSYDATTH 617
            YEP+++      F S SYDATTH
Sbjct: 386 LYEPIDDGCESQVFCSCSYDATTH 409

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>GDIA_HUMAN (P31150) Rab GDP dissociation inhibitor alpha (Rab GDI alpha)|
           (Guanosine diphosphate dissociation inhibitor 1) (GDI-1)
           (XAP-4) (Oligophrenin-2)
          Length = 447

 Score =  236 bits (603), Expect = 3e-62
 Identities = 115/204 (56%), Positives = 151/204 (74%)
 Frame = +3

Query: 6   RLKLYSXSLARFQGGSPYIYPLYGLGELPQGFARLSAVYGGTYMLCKPECKVEFDMEGKA 185
           R+KLYS SLAR+ G SPY+YPLYGLGELPQGFARLSA+YGGTYML KP   +  +  GK 
Sbjct: 208 RIKLYSESLARY-GKSPYLYPLYGLGELPQGFARLSAIYGGTYMLNKPVDDIIME-NGKV 265

Query: 186 CGVTSEGETAKCKKVVCDPSYLTNKVRKIGKVARAIAIMSHPIPNTNESHSVQIILPQKQ 365
            GV SEGE A+CK+++CDPSY+ ++VRK G+V R I I+SHPI NTN+++S QII+PQ Q
Sbjct: 266 VGVKSEGEVARCKQLICDPSYIPDRVRKAGQVIRIICILSHPIKNTNDANSCQIIIPQNQ 325

Query: 366 LGRNSDMYVFCCSYTHNVAPKGKFIAFVSAEAESDNIQSELKPGIDLLGPVDELFFDMYD 545
           + R SD+YV   SY HNVA +GK+IA  S   E+ + + E++P ++LL P+D+ F  + D
Sbjct: 326 VNRKSDIYVCMISYAHNVAAQGKYIAIASTTVETTDPEKEVEPALELLEPIDQKFVAISD 385

Query: 546 RYEPVNEPSLDNCFISTSYDATTH 617
            YEP+++      F S SYDATTH
Sbjct: 386 LYEPIDDGCESQVFCSCSYDATTH 409

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>GDIA_MOUSE (P50396) Rab GDP dissociation inhibitor alpha (Rab GDI alpha)|
           (Guanosine diphosphate dissociation inhibitor 1) (GDI-1)
          Length = 447

 Score =  236 bits (602), Expect = 4e-62
 Identities = 115/204 (56%), Positives = 151/204 (74%)
 Frame = +3

Query: 6   RLKLYSXSLARFQGGSPYIYPLYGLGELPQGFARLSAVYGGTYMLCKPECKVEFDMEGKA 185
           R+KLYS SLAR+ G SPY+YPLYGLGELPQGFARLSA+YGGTYML KP   +  +  GK 
Sbjct: 208 RIKLYSESLARY-GKSPYLYPLYGLGELPQGFARLSAIYGGTYMLNKPVDDIIME-NGKV 265

Query: 186 CGVTSEGETAKCKKVVCDPSYLTNKVRKIGKVARAIAIMSHPIPNTNESHSVQIILPQKQ 365
            GV SEGE A+CK+++CDPSY+ ++V+K G+V R I I+SHPI NTN+++S QII+PQ Q
Sbjct: 266 VGVKSEGEVARCKQLICDPSYIPDRVQKAGQVIRIICILSHPIKNTNDANSCQIIIPQNQ 325

Query: 366 LGRNSDMYVFCCSYTHNVAPKGKFIAFVSAEAESDNIQSELKPGIDLLGPVDELFFDMYD 545
           + R SD+YV   SY HNVA +GK+IA  S   E+   + E++P ++LL P+D+ F  + D
Sbjct: 326 VNRKSDIYVCMISYAHNVAAQGKYIAIASTTVETAEPEKEVEPALELLEPIDQKFVAISD 385

Query: 546 RYEPVNEPSLDNCFISTSYDATTH 617
            YEP+++ S    F S SYDATTH
Sbjct: 386 LYEPIDDGSESQVFCSCSYDATTH 409

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>GDIB_MOUSE (Q61598) Rab GDP dissociation inhibitor beta (Rab GDI beta)|
           (Guanosine diphosphate dissociation inhibitor 2) (GDI-2)
           (GDI-3)
          Length = 445

 Score =  228 bits (580), Expect = 1e-59
 Identities = 111/204 (54%), Positives = 150/204 (73%)
 Frame = +3

Query: 6   RLKLYSXSLARFQGGSPYIYPLYGLGELPQGFARLSAVYGGTYMLCKPECKVEFDMEGKA 185
           R+KLYS SLAR+ G SPY+YPLYGLGELPQGFARLSA+YGGTYML KP  ++     GK 
Sbjct: 208 RIKLYSESLARY-GKSPYLYPLYGLGELPQGFARLSAIYGGTYMLNKPIEEI-IVQNGKV 265

Query: 186 CGVTSEGETAKCKKVVCDPSYLTNKVRKIGKVARAIAIMSHPIPNTNESHSVQIILPQKQ 365
            GV SEGE A+CK+++CDPSY+ ++V K+G+V R I I+SHPI NTN+++S QII+PQ Q
Sbjct: 266 VGVKSEGEIARCKQLICDPSYVKDRVEKVGQVIRVICILSHPIKNTNDANSCQIIIPQNQ 325

Query: 366 LGRNSDMYVFCCSYTHNVAPKGKFIAFVSAEAESDNIQSELKPGIDLLGPVDELFFDMYD 545
           + R SD+YV   S+ HNVA +GK+IA VS   E+   + E++P ++LL P+++ F  + D
Sbjct: 326 VNRKSDIYVCMISFAHNVAAQGKYIAIVSTTVETKEPEKEIRPALELLEPIEQKFVSISD 385

Query: 546 RYEPVNEPSLDNCFISTSYDATTH 617
            + P +  +    FIS +YDATTH
Sbjct: 386 LFVPKDLGTDSQIFISRAYDATTH 409

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>GDIB_HUMAN (P50395) Rab GDP dissociation inhibitor beta (Rab GDI beta)|
           (Guanosine diphosphate dissociation inhibitor 2) (GDI-2)
          Length = 445

 Score =  226 bits (577), Expect = 3e-59
 Identities = 111/204 (54%), Positives = 149/204 (73%)
 Frame = +3

Query: 6   RLKLYSXSLARFQGGSPYIYPLYGLGELPQGFARLSAVYGGTYMLCKPECKVEFDMEGKA 185
           R+KLYS SLAR+ G SPY+YPLYGLGELPQGFARLSA+YGGTYML KP  ++     GK 
Sbjct: 208 RIKLYSESLARY-GKSPYLYPLYGLGELPQGFARLSAIYGGTYMLNKPIEEI-IVQNGKV 265

Query: 186 CGVTSEGETAKCKKVVCDPSYLTNKVRKIGKVARAIAIMSHPIPNTNESHSVQIILPQKQ 365
            GV SEGE A+CK+++CDPSY+ ++V K+G+V R I I+SHPI NTN+++S QII+PQ Q
Sbjct: 266 IGVKSEGEIARCKQLICDPSYVKDRVEKVGQVIRVICILSHPIKNTNDANSCQIIIPQNQ 325

Query: 366 LGRNSDMYVFCCSYTHNVAPKGKFIAFVSAEAESDNIQSELKPGIDLLGPVDELFFDMYD 545
           + R SD+YV   S+ HNVA +GK+IA VS   E+   + E++P ++LL P+++ F  + D
Sbjct: 326 VNRKSDIYVCMISFAHNVAAQGKYIAIVSTTVETKEPEKEIRPALELLEPIEQKFVSISD 385

Query: 546 RYEPVNEPSLDNCFISTSYDATTH 617
              P +  +    FIS +YDATTH
Sbjct: 386 LLVPKDLGTESQIFISRTYDATTH 409

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>GDIB_CANFA (O97556) Rab GDP dissociation inhibitor beta (Rab GDI beta)|
           (Guanosine diphosphate dissociation inhibitor 2) (GDI-2)
          Length = 445

 Score =  226 bits (577), Expect = 3e-59
 Identities = 112/204 (54%), Positives = 149/204 (73%)
 Frame = +3

Query: 6   RLKLYSXSLARFQGGSPYIYPLYGLGELPQGFARLSAVYGGTYMLCKPECKVEFDMEGKA 185
           R+KLYS SLAR+ G SPY+YPLYGLGELPQGFARLSA+YGGTYML KP  ++     GK 
Sbjct: 208 RIKLYSESLARY-GKSPYLYPLYGLGELPQGFARLSAIYGGTYMLNKPIEEI-IVQNGKV 265

Query: 186 CGVTSEGETAKCKKVVCDPSYLTNKVRKIGKVARAIAIMSHPIPNTNESHSVQIILPQKQ 365
            GV SEGE A+CK+++CDPSY+ ++V K+G+V R I I+SHPI NTN+++S QII+PQ Q
Sbjct: 266 IGVKSEGEVARCKQLICDPSYVKDRVEKVGQVIRVICILSHPIKNTNDANSCQIIIPQNQ 325

Query: 366 LGRNSDMYVFCCSYTHNVAPKGKFIAFVSAEAESDNIQSELKPGIDLLGPVDELFFDMYD 545
           + R SD+YV   S  HNVA +GK+IA VS  AE+   + E++P ++LL P+++ F  + D
Sbjct: 326 VNRKSDIYVCMISSAHNVAAQGKYIAIVSTTAETKEPEKEIRPALELLEPIEQKFVSISD 385

Query: 546 RYEPVNEPSLDNCFISTSYDATTH 617
              P +  +    FIS +YDATTH
Sbjct: 386 LLVPKDLGTESQIFISRTYDATTH 409

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>GDIB_PONPY (Q5RCE1) Rab GDP dissociation inhibitor beta (Rab GDI beta)|
           (Guanosine diphosphate dissociation inhibitor 2) (GDI-2)
          Length = 445

 Score =  225 bits (574), Expect = 7e-59
 Identities = 111/204 (54%), Positives = 149/204 (73%)
 Frame = +3

Query: 6   RLKLYSXSLARFQGGSPYIYPLYGLGELPQGFARLSAVYGGTYMLCKPECKVEFDMEGKA 185
           R+KLYS SLAR+ G SPY+YPLYGLGELPQGFARLSA+YGGTYML KP  ++     GK 
Sbjct: 208 RIKLYSESLARY-GKSPYLYPLYGLGELPQGFARLSAIYGGTYMLNKPIEEI-IVQNGKV 265

Query: 186 CGVTSEGETAKCKKVVCDPSYLTNKVRKIGKVARAIAIMSHPIPNTNESHSVQIILPQKQ 365
            GV SEGE A+CK+++CDPSY+ ++V K+G+V R I I+SHPI NTN+++S QII+PQ Q
Sbjct: 266 IGVKSEGEIARCKQLICDPSYVKDRVEKVGQVIRVICILSHPIKNTNDANSCQIIIPQNQ 325

Query: 366 LGRNSDMYVFCCSYTHNVAPKGKFIAFVSAEAESDNIQSELKPGIDLLGPVDELFFDMYD 545
           + R SD+YV   S+ HNVA +GK+IA VS   E+   + E++P ++LL P+++ F  + D
Sbjct: 326 VNRKSDIYVCMISFAHNVAAQGKYIAIVSTTVETKEPEKEIRPALELLEPIEQKFVSISD 385

Query: 546 RYEPVNEPSLDNCFISTSYDATTH 617
              P +  +    FIS +YDATTH
Sbjct: 386 LLVPKDLGTESLIFISRTYDATTH 409

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>GDIB_BOVIN (P50397) Rab GDP dissociation inhibitor beta (Rab GDI beta)|
           (Guanosine diphosphate dissociation inhibitor 2) (GDI-2)
          Length = 445

 Score =  223 bits (568), Expect = 3e-58
 Identities = 110/204 (53%), Positives = 147/204 (72%)
 Frame = +3

Query: 6   RLKLYSXSLARFQGGSPYIYPLYGLGELPQGFARLSAVYGGTYMLCKPECKVEFDMEGKA 185
           R+KLYS SLAR+ G SPY+YPLYGLGELPQGFARLSA+YGGTYML KP  ++     GK 
Sbjct: 208 RIKLYSESLARY-GKSPYLYPLYGLGELPQGFARLSAIYGGTYMLNKPIEEIIMQ-NGKV 265

Query: 186 CGVTSEGETAKCKKVVCDPSYLTNKVRKIGKVARAIAIMSHPIPNTNESHSVQIILPQKQ 365
            GV SEGE A+CK+++CDPSY+ ++V K+G+V R I I+SHPI NTN+++S QII+PQ Q
Sbjct: 266 IGVKSEGEIARCKQLICDPSYVKDRVEKVGQVIRVICILSHPIKNTNDANSCQIIIPQNQ 325

Query: 366 LGRNSDMYVFCCSYTHNVAPKGKFIAFVSAEAESDNIQSELKPGIDLLGPVDELFFDMYD 545
           + R SD+YV   S  HNVA +GK+IA  S   E+   + E++P ++LL P+++ F  + D
Sbjct: 326 VNRKSDIYVCMISSAHNVAAQGKYIAIASTTVETKEPEKEIRPALELLEPIEQKFVSISD 385

Query: 546 RYEPVNEPSLDNCFISTSYDATTH 617
              P +  +    FIS +YDATTH
Sbjct: 386 LLVPKDLGTESQIFISRTYDATTH 409

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>GDI1_SCHPO (Q10305) Probable secretory pathway GDP dissociation inhibitor 1|
          Length = 440

 Score =  223 bits (568), Expect = 3e-58
 Identities = 110/205 (53%), Positives = 146/205 (71%)
 Frame = +3

Query: 3   ERLKLYSXSLARFQGGSPYIYPLYGLGELPQGFARLSAVYGGTYMLCKPECKVEFDMEGK 182
           ER+ LY+ S+A+F G SPYIYPLYGLGELPQGFARLSA+YGGTYML +P  ++ +  +G 
Sbjct: 206 ERILLYASSIAKF-GKSPYIYPLYGLGELPQGFARLSAIYGGTYMLNQPVDEIVYGDDGV 264

Query: 183 ACGVTSEGETAKCKKVVCDPSYLTNKVRKIGKVARAIAIMSHPIPNTNESHSVQIILPQK 362
           A GV S  + AK K+++ DPSY   KVR +G++ RAI I++HPIPNT+   SVQII+PQ 
Sbjct: 265 AIGVRSGDQVAKAKQIIGDPSYFREKVRSVGRLVRAICILNHPIPNTDNLDSVQIIIPQN 324

Query: 363 QLGRNSDMYVFCCSYTHNVAPKGKFIAFVSAEAESDNIQSELKPGIDLLGPVDELFFDMY 542
           Q+ R  D+Y+   S  HNV PKG ++A +S   E+ N  SE+ PG+ LLGPV E F  + 
Sbjct: 325 QVKRKHDIYIAGISSVHNVCPKGYYLAIISTIVETANPLSEIAPGLKLLGPVVESFSRVQ 384

Query: 543 DRYEPVNEPSLDNCFISTSYDATTH 617
           + YEPV + + D C+IS S DAT+H
Sbjct: 385 EIYEPVTDGTKDQCYISKSVDATSH 409

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>GDIB_PIG (Q6Q7J2) Rab GDP dissociation inhibitor beta (Rab GDI beta)|
           (Guanosine diphosphate dissociation inhibitor 2) (GDI-2)
          Length = 445

 Score =  221 bits (562), Expect = 2e-57
 Identities = 109/204 (53%), Positives = 147/204 (72%)
 Frame = +3

Query: 6   RLKLYSXSLARFQGGSPYIYPLYGLGELPQGFARLSAVYGGTYMLCKPECKVEFDMEGKA 185
           R+KLYS SLAR+ G SPY+YPLYGLGELPQGFARLSA+YGGTYML KP  ++     GK 
Sbjct: 208 RIKLYSESLARY-GKSPYLYPLYGLGELPQGFARLSAIYGGTYMLNKPIEEI-IVQNGKV 265

Query: 186 CGVTSEGETAKCKKVVCDPSYLTNKVRKIGKVARAIAIMSHPIPNTNESHSVQIILPQKQ 365
            GV SEGE A+CK+++CDPSY+ ++V K+G+V R I I+SHPI NT++++S QII+PQ Q
Sbjct: 266 IGVKSEGEIARCKQLICDPSYVKDRVEKVGQVIRVICILSHPIKNTSDANSCQIIIPQNQ 325

Query: 366 LGRNSDMYVFCCSYTHNVAPKGKFIAFVSAEAESDNIQSELKPGIDLLGPVDELFFDMYD 545
           + R SD+YV   S  HNVA +GK+IA  S   E+   + E++P ++LL P+++ F  + D
Sbjct: 326 VNRKSDIYVCMISSAHNVAAQGKYIAIASTTVETKEPEKEIRPALELLKPIEQKFVSISD 385

Query: 546 RYEPVNEPSLDNCFISTSYDATTH 617
              P +  +    FIS +YDATTH
Sbjct: 386 LLVPKDLGTDSQIFISRTYDATTH 409

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>GDIB_RAT (P50399) Rab GDP dissociation inhibitor beta (Rab GDI beta)|
           (Guanosine diphosphate dissociation inhibitor 2) (GDI-2)
           (GDI-3)
          Length = 445

 Score =  217 bits (553), Expect = 2e-56
 Identities = 107/203 (52%), Positives = 145/203 (71%)
 Frame = +3

Query: 9   LKLYSXSLARFQGGSPYIYPLYGLGELPQGFARLSAVYGGTYMLCKPECKVEFDMEGKAC 188
           L  YS SLAR+ G SPY+YPLYG  ELPQGFARLSA+YGGTYML KP  ++     GK  
Sbjct: 209 LNFYSESLARY-GKSPYLYPLYGPWELPQGFARLSAIYGGTYMLNKPIEEI-IVQNGKVV 266

Query: 189 GVTSEGETAKCKKVVCDPSYLTNKVRKIGKVARAIAIMSHPIPNTNESHSVQIILPQKQL 368
           GV SEGE A+CK+++CDPSY+ ++V K+G+V R I I+SHPI NTN+++S QII+PQ Q+
Sbjct: 267 GVKSEGEIARCKQLICDPSYVKDRVEKVGQVIRVICILSHPIKNTNDANSCQIIIPQNQV 326

Query: 369 GRNSDMYVFCCSYTHNVAPKGKFIAFVSAEAESDNIQSELKPGIDLLGPVDELFFDMYDR 548
            R SD+YV   S+ HNVA +GK+IA VS   E+   + E++P ++LL P+++ F  + D 
Sbjct: 327 NRKSDIYVCMISFAHNVAAQGKYIAIVSTTVETKEPEKEIRPALELLEPIEQKFVSISDL 386

Query: 549 YEPVNEPSLDNCFISTSYDATTH 617
           + P +  +    FIS +YDATTH
Sbjct: 387 FVPKDLGTDSQIFISRAYDATTH 409

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>GDI1_YEAST (P39958) Rab GDP-dissociation inhibitor (Rab GDI) (Secretory|
           pathway GDP dissociation inhibitor)
          Length = 451

 Score =  199 bits (507), Expect = 4e-51
 Identities = 103/207 (49%), Positives = 141/207 (68%), Gaps = 2/207 (0%)
 Frame = +3

Query: 3   ERLKLYSXSLARFQGGSPYIYPLYGLGELPQGFARLSAVYGGTYMLCKPECKVEFDME-G 179
           ER+ LY  S+AR+ G SPY+YP+YGLGELPQGFARLSA+YGGTYML  P  +V +  + G
Sbjct: 215 ERILLYCQSVARY-GKSPYLYPMYGLGELPQGFARLSAIYGGTYMLDTPIDEVLYKKDTG 273

Query: 180 KACGVTSEGETAKCKKVVCDPSYLTNKVRKIG-KVARAIAIMSHPIPNTNESHSVQIILP 356
           K  GV ++  T K   V+ DP+Y   K +  G +V RAI I++HP+PNT+ + S+QII+P
Sbjct: 274 KFEGVKTKLGTFKAPLVIADPTYFPEKCKSTGQRVIRAICILNHPVPNTSNADSLQIIIP 333

Query: 357 QKQLGRNSDMYVFCCSYTHNVAPKGKFIAFVSAEAESDNIQSELKPGIDLLGPVDELFFD 536
           Q QLGR SD+YV   S  HNV  KG ++A +S   E+D    EL+P   LLGP++E F  
Sbjct: 334 QSQLGRKSDIYVAIVSDAHNVCSKGHYLAIISTIIETDKPHIELEPAFKLLGPIEEKFMG 393

Query: 537 MYDRYEPVNEPSLDNCFISTSYDATTH 617
           + + +EP  + S DN ++S SYDA++H
Sbjct: 394 IAELFEPREDGSKDNIYLSRSYDASSH 420

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>RABEP_DROME (Q9V8W3) Rab proteins geranylgeranyltransferase component A (Rab|
           escort protein homolog) (REP)
          Length = 511

 Score = 74.3 bits (181), Expect = 3e-13
 Identities = 48/166 (28%), Positives = 81/166 (48%), Gaps = 4/166 (2%)
 Frame = +3

Query: 3   ERLKLYSXSLARFQGGSPYIYPLYGLGELPQGFARLSAVYGGTYMLCKPECKVEFDMEGK 182
           +R + +  SL R+ G +P+++P+YG GELPQ F RL AVYGG Y L +    +  D    
Sbjct: 232 QRTQRFLGSLGRY-GNTPFLFPMYGCGELPQCFCRLCAVYGGIYCLKRAVDDIALDSNSN 290

Query: 183 ACGVTSEGETAKCKKVVCDPSY--LTNKVRKIGKVARAIAIMSHPIPNTNESHSVQIILP 356
              ++S G+T + K VV  P Y  ++  +     ++R + I S P+ N   +     +  
Sbjct: 291 EFLLSSAGKTLRAKNVVSAPGYTPVSKGIELKPHISRGLFISSSPLGNEELNKGGGGVNL 350

Query: 357 QKQLGRNSDMYVFCCSYTH--NVAPKGKFIAFVSAEAESDNIQSEL 488
            + L        F    +H     P+G +I  ++  A S++  S+L
Sbjct: 351 LRLLDNEGGREAFLIQLSHYTGACPEGLYIFHLTTPALSEDPASDL 396

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>RAE2_MOUSE (Q9QZD5) Rab proteins geranylgeranyltransferase component A 2 (Rab|
           escort protein 2) (REP-2) (Choroideraemia-like protein)
          Length = 621

 Score = 64.3 bits (155), Expect = 3e-10
 Identities = 49/172 (28%), Positives = 83/172 (48%), Gaps = 6/172 (3%)
 Frame = +3

Query: 12  KLYSXSLARFQGGSPYIYPLYGLGELPQGFARLSAVYGGTYML-CKPECKVEFDMEGKAC 188
           K +   L RF G +P+I+PLYG GE+PQ F R+ AV+GG Y L  K +C V     G+  
Sbjct: 360 KNFLQCLGRF-GNTPFIFPLYGHGEIPQCFCRMCAVFGGVYCLRHKVQCLVVDKDSGRCK 418

Query: 189 GVTSE-GETAKCKKVVCDPSYLTNKV---RKIGKVARAIAIMSHPIPNTNESHSVQI-IL 353
           G+    G+       + + SYL  +     +  +++RA+ I    I  T+    + I ++
Sbjct: 419 GIIDAFGQRISANYFIVEDSYLPKETCSNVQYKQISRAVLITDQSILKTDSDQQISILVV 478

Query: 354 PQKQLGRNSDMYVFCCSYTHNVAPKGKFIAFVSAEAESDNIQSELKPGIDLL 509
           P  + G  S   +  CS T     K  ++  ++  + S   + +L+P +  L
Sbjct: 479 PPLEPGTTSVRVMELCSST-MTCMKDSYLVHLTC-SSSKTAREDLEPVVKQL 528

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>RAE2_HUMAN (P26374) Rab proteins geranylgeranyltransferase component A 2 (Rab|
           escort protein 2) (REP-2) (Choroideraemia-like protein)
          Length = 656

 Score = 63.2 bits (152), Expect = 6e-10
 Identities = 46/140 (32%), Positives = 70/140 (50%), Gaps = 7/140 (5%)
 Frame = +3

Query: 12  KLYSXSLARFQGGSPYIYPLYGLGELPQGFARLSAVYGGTYML-CKPECKVEFDMEGKAC 188
           K +   L RF G +P+++PLYG GE+PQGF R+ AV+GG Y L  K +C V  D E   C
Sbjct: 361 KNFLQCLGRF-GNTPFLFPLYGQGEIPQGFCRMCAVFGGIYCLRHKVQCFV-VDKESGRC 418

Query: 189 GVTSE--GETAKCKKVVCDPSYLTNKV---RKIGKVARAIAIMSHPIPNTNESHSVQI-I 350
               +  G+    K  + + SYL+ +     +  +++RA+ I    I  T+      I I
Sbjct: 419 KAIIDHFGQRINAKYFIVEDSYLSEETCSNVQYKQISRAVLITDQSILKTDLDQQTSILI 478

Query: 351 LPQKQLGRNSDMYVFCCSYT 410
           +P  + G  +      CS T
Sbjct: 479 VPPAEPGACAVRVTELCSST 498

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>RAE1_RAT (P37727) Rab proteins geranylgeranyltransferase component A 1 (Rab|
           escort protein 1) (REP-1) (Choroideraemia protein
           homolog)
          Length = 650

 Score = 61.6 bits (148), Expect = 2e-09
 Identities = 51/191 (26%), Positives = 85/191 (44%), Gaps = 6/191 (3%)
 Frame = +3

Query: 12  KLYSXSLARFQGGSPYIYPLYGLGELPQGFARLSAVYGGTYMLCKPECKVEFDMEGKACG 191
           K +   L R+ G +P+++PLYG GELPQ F R+ AV+GG Y L      +  D E + C 
Sbjct: 356 KKFLQCLGRY-GNTPFLFPLYGQGELPQCFCRMCAVFGGIYCLRHSVQCLVVDKESRKCK 414

Query: 192 VTSE--GETAKCKKVVCDPSYLTNKV---RKIGKVARAIAIMSHPIPNTNESHSVQII-L 353
              +  G+    K  + + SYL+       +  +++RA+ I    +  T+    V I+ +
Sbjct: 415 AVIDQFGQRIISKHFIIEDSYLSENTCSRVQYRQISRAVLITDGSVLKTDADQQVSILAV 474

Query: 354 PQKQLGRNSDMYVFCCSYTHNVAPKGKFIAFVSAEAESDNIQSELKPGIDLLGPVDELFF 533
           P ++ G      +  CS T     KG ++  ++  +         K   + L  V +  F
Sbjct: 475 PAEEPGSFGVRVIELCSST-MTCMKGTYLVHLTCMSS--------KTAREDLERVVQKLF 525

Query: 534 DMYDRYEPVNE 566
             Y   E  NE
Sbjct: 526 TPYTEIEAENE 536

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>RAE1_MOUSE (Q9QXG2) Rab proteins geranylgeranyltransferase component A 1 (Rab|
           escort protein 1) (REP-1) (Choroideraemia protein
           homolog)
          Length = 665

 Score = 60.8 bits (146), Expect = 3e-09
 Identities = 52/191 (27%), Positives = 85/191 (44%), Gaps = 6/191 (3%)
 Frame = +3

Query: 12  KLYSXSLARFQGGSPYIYPLYGLGELPQGFARLSAVYGGTYMLCKPECKVEFDMEGKACG 191
           K +   L R+ G +P+++PLYG GELPQ F R+ AV+GG Y L      +  D E + C 
Sbjct: 371 KKFLQCLGRY-GNTPFLFPLYGQGELPQCFCRMCAVFGGIYCLRHSVQCLVVDKESRKCK 429

Query: 192 --VTSEGETAKCKKVVCDPSYLTNKV---RKIGKVARAIAIMSHPIPNTNESHSVQII-L 353
             V   G+    K  V + SYL+       +  +++RA+ I    +   +    V I+ +
Sbjct: 430 AIVDQFGQRIISKHFVIEDSYLSENTCSGVQYRQISRAVLITDGSVLKPDSDQQVSILTV 489

Query: 354 PQKQLGRNSDMYVFCCSYTHNVAPKGKFIAFVSAEAESDNIQSELKPGIDLLGPVDELFF 533
           P ++ G  +   +  CS T     KG ++  ++  +         K   + L  V +  F
Sbjct: 490 PAEESGSFAVRVIELCSST-MTCMKGTYLVHLTCMSS--------KTAREDLERVVQKLF 540

Query: 534 DMYDRYEPVNE 566
             Y   E  NE
Sbjct: 541 TPYTEIEAENE 551

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>RAE1_HUMAN (P24386) Rab proteins geranylgeranyltransferase component A 1 (Rab|
           escort protein 1) (REP-1) (Choroideraemia protein) (TCD
           protein)
          Length = 653

 Score = 57.4 bits (137), Expect = 3e-08
 Identities = 38/139 (27%), Positives = 68/139 (48%), Gaps = 6/139 (4%)
 Frame = +3

Query: 12  KLYSXSLARFQGGSPYIYPLYGLGELPQGFARLSAVYGGTYMLCKPECKVEFDMEGKACG 191
           K +   L R+ G +P+++PLYG GELPQ F R+ AV+GG Y L      +  D E + C 
Sbjct: 359 KNFLHCLGRY-GNTPFLFPLYGQGELPQCFCRMCAVFGGIYCLRHSVQCLVVDKESRKCK 417

Query: 192 --VTSEGETAKCKKVVCDPSYLTNKV---RKIGKVARAIAIMSHPIPNTNESHSVQII-L 353
             +   G+    +  + + SY    +    +  +++RA+ I    +  T+    + I+ +
Sbjct: 418 AIIDQFGQRIISEHFLVEDSYFPENMCSRVQYRQISRAVLITDRSVLKTDSDQQISILTV 477

Query: 354 PQKQLGRNSDMYVFCCSYT 410
           P ++ G  +   +  CS T
Sbjct: 478 PAEEPGTFAVRVIELCSST 496

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>RAEP_YEAST (P32864) Rab proteins geranylgeranyltransferase component A (Rab|
           escort protein) (REP)
          Length = 603

 Score = 40.8 bits (94), Expect = 0.003
 Identities = 40/178 (22%), Positives = 73/178 (41%), Gaps = 9/178 (5%)
 Frame = +3

Query: 3   ERLKLYSXSLARFQGGSPYIYPLYG-LGELPQGFARLSAVYGGTYMLCKPECKVEFDMEG 179
           +R++ Y  S   + G  P +   YG  GEL QGF R +AV G TY L   E  V F+   
Sbjct: 259 QRIRRYLTSFDVY-GPFPALCSKYGGPGELSQGFCRSAAVGGATYKL--NEKLVSFNPTT 315

Query: 180 KACGVTSEGETAKCKKVVCDPSYLTNKVRKIG----KVARAIAIMSHPIP---NTNESHS 338
           K        +    +KV+  P+      + +     +V R   I+ +P     N  ES +
Sbjct: 316 KVATFQDGSKVEVSEKVIISPTQAPKDSKHVPQQQYQVHRLTCIVENPCTEWFNEGESAA 375

Query: 339 VQIILP-QKQLGRNSDMYVFCCSYTHNVAPKGKFIAFVSAEAESDNIQSELKPGIDLL 509
           + +  P   + G    +  F       + P+G  + ++S   +    + ++   ++ +
Sbjct: 376 MVVFPPGSLKSGNKEVVQAFILGAGSEICPEGTIVWYLSTTEQGPRAEMDIDAALEAM 433

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>PRKDC_CANFA (Q8WN22) DNA-dependent protein kinase catalytic subunit (EC 2.7.11.1)|
            (DNA-PK catalytic subunit) (DNA-PKcs)
          Length = 4144

 Score = 32.7 bits (73), Expect = 0.87
 Identities = 16/52 (30%), Positives = 29/52 (55%)
 Frame = +1

Query: 367  LDAIQTCMSSVAHTPTTSHQKGSSLHSSLQKRRVIIYNPNSSLALIYLVQWM 522
            L  I+ C  ++ H      +K  SL+   ++RR   + P++SL L+ +VQW+
Sbjct: 1131 LGTIRQCCDAIDHLRHIIEKKHVSLNKVKKRRRPRGFPPSASLCLLDMVQWL 1182

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>TTDT_ECOLI (P39414) Putative tartrate carrier (Tartrate transporter)|
           (Tartrate/succinate antiporter)
          Length = 487

 Score = 32.0 bits (71), Expect = 1.5
 Identities = 26/80 (32%), Positives = 38/80 (47%), Gaps = 5/80 (6%)
 Frame = -1

Query: 367 SCFCGKIIWTEWDSFVFGIGWLIIAIARATLPIFLTLLVKYEGSQTTFLHFAVSPSD--- 197
           S F   +IW  + +F+FG G+    + R        +LVK  G +T FL +AV  S+   
Sbjct: 96  SGFSNSVIWLIFAAFMFGTGYEKTGLGRR----IALILVKKMGHRTLFLGYAVMFSELIL 151

Query: 196 --VTPHAFPSISNSTLHSGL 143
             VTP      SNS   +G+
Sbjct: 152 APVTP------SNSARGAGI 165

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>RAEP_CANAL (O93831) Rab proteins geranylgeranyltransferase component A (Rab|
           escort protein) (REP)
          Length = 640

 Score = 31.2 bits (69), Expect = 2.5
 Identities = 34/129 (26%), Positives = 48/129 (37%), Gaps = 30/129 (23%)
 Frame = +3

Query: 75  GLGELPQGFARLSAVYGGTYMLCKPECKVEFDMEGKACGVTSEGETAKCKKVVCDPS--- 245
           G GEL QGF R +AV G TY L       +FD   K             +K++  P+   
Sbjct: 242 GPGELSQGFCRSAAVAGTTYKL--NTNLTDFDPISKIAHFNDGSHIKINEKIIISPTQLP 299

Query: 246 -----------------YLTNKVRKI---------GKVARAIAIM-SHPIPNTNESHSVQ 344
                            Y+T  V  +         G  + AI +   H +P  N+ HSVQ
Sbjct: 300 KFLQSSYNKVVENLQPYYVTRLVTVVRRDCKEWMSGNESSAIVVFPPHSLPTDNQ-HSVQ 358

Query: 345 IILPQKQLG 371
           +I+     G
Sbjct: 359 VIIQNGNSG 367

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>RT02_PROWI (P46741) Mitochondrial ribosomal protein S2|
          Length = 274

 Score = 31.2 bits (69), Expect = 2.5
 Identities = 24/80 (30%), Positives = 35/80 (43%), Gaps = 7/80 (8%)
 Frame = +1

Query: 349 FCHRNNLD-----AIQTCMSSVAHTPTTSHQKGSSLHSSLQKRR--VIIYNPNSSLALIY 507
           FC +NN+D      I+ C              G S+  SLQK+   + I+NP  +  LI 
Sbjct: 166 FCEKNNIDFTRYQKIKKCFQGYGSV------SGDSIVMSLQKKPDVIFIFNPGDNKNLIL 219

Query: 508 LVQWMSSFLICMTDMNQ*TN 567
               +   +I  TDM+  TN
Sbjct: 220 EANRLQIPVIGCTDMSSNTN 239

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>CATB_HUMAN (P07858) Cathepsin B precursor (EC 3.4.22.1) (Cathepsin B1) (APP|
           secretase) (APPS) [Contains: Cathepsin B light chain;
           Cathepsin B heavy chain]
          Length = 339

 Score = 30.0 bits (66), Expect = 5.7
 Identities = 19/55 (34%), Positives = 26/55 (47%), Gaps = 5/55 (9%)
 Frame = +3

Query: 99  FARLSAVYGGTY---MLCKPEC--KVEFDMEGKACGVTSEGETAKCKKVVCDPSY 248
           + R   V GG Y   + C+P      E  + G     T EG+T KC K +C+P Y
Sbjct: 162 WTRKGLVSGGLYESHVGCRPYSIPPCEHHVNGSRPPCTGEGDTPKCSK-ICEPGY 215

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>MALK_VIBPA (Q87GB5) Maltose/maltodextrin import ATP-binding protein malK (EC|
           3.6.3.19)
          Length = 372

 Score = 30.0 bits (66), Expect = 5.7
 Identities = 19/66 (28%), Positives = 31/66 (46%)
 Frame = +3

Query: 420 APKGKFIAFVSAEAESDNIQSELKPGIDLLGPVDELFFDMYDRYEPVNEPSLDNCFISTS 599
           +PK  F++    E ES+ ++ +L  G+    PVD    +  DR      P  ++   +T 
Sbjct: 236 SPKMNFMSVFIDEVESERVKVQLSNGVSFWIPVDGTTVNRGDRMSLGIRP--EHLLSATE 293

Query: 600 YDATTH 617
            DAT H
Sbjct: 294 ADATIH 299

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>S6A12_RAT (P48056) Sodium- and chloride-dependent betaine transporter|
           (Na+/Cl-betaine/GABA transporter)
          Length = 614

 Score = 30.0 bits (66), Expect = 5.7
 Identities = 18/67 (26%), Positives = 33/67 (49%), Gaps = 1/67 (1%)
 Frame = -1

Query: 385 MSELRPSCFCGKIIWTEWDSFVFGIGWLIIAIARATLPIFLTL-LVKYEGSQTTFLHFAV 209
           +S+  P  +    I+  W    + IGWL+   + A +P+F+ + L+K +GS    L   +
Sbjct: 517 LSKYTPLKYNNVYIYPSWG---YSIGWLLAFSSMACVPLFIIITLLKTQGSFKKRLQRLI 573

Query: 208 SPSDVTP 188
           +P    P
Sbjct: 574 TPDPSLP 580

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>ACDA2_METTE (Q9C4Z4) Acetyl-CoA decarbonylase/synthase complex alpha subunit 2|
           (EC 1.2.99.2) (ACDS complex alpha subunit 2) (ACDS
           complex carbon monoxide dehydrogenase 2) (ACDS CODH 2)
          Length = 803

 Score = 29.6 bits (65), Expect = 7.4
 Identities = 18/57 (31%), Positives = 27/57 (47%), Gaps = 8/57 (14%)
 Frame = +3

Query: 450 SAEAESDNIQSELKPGIDLLGP--------VDELFFDMYDRYEPVNEPSLDNCFIST 596
           +A+  ++  + EL P    +GP        V +  F ++DRYEPV  P  D C   T
Sbjct: 27  AAKEAAEKAEEELGP----MGPTPFPTAATVRDWSFTLFDRYEPVYTPMCDQCCYCT 79

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>YETS4_MOUSE (Q9CR11) YEATS domain-containing protein 4|
          Length = 227

 Score = 29.3 bits (64), Expect = 9.7
 Identities = 14/44 (31%), Positives = 20/44 (45%)
 Frame = +2

Query: 329 VPLSPDYFATETTWTQFRHVCLLLLIHPQRRTKREVHCIRLCRS 460
           V   P Y  TET W +F  +  +  I P  R     H ++L +S
Sbjct: 80  VVTKPPYEITETGWGEFEIIIKIFFIDPNERPVTLYHLLKLFQS 123

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>YETS4_HUMAN (O95619) YEATS domain-containing protein 4 (Glioma-amplified|
           sequence-41) (Gas41) (NuMA-binding protein 1) (NuBI-1)
           (NuBI1)
          Length = 227

 Score = 29.3 bits (64), Expect = 9.7
 Identities = 14/44 (31%), Positives = 20/44 (45%)
 Frame = +2

Query: 329 VPLSPDYFATETTWTQFRHVCLLLLIHPQRRTKREVHCIRLCRS 460
           V   P Y  TET W +F  +  +  I P  R     H ++L +S
Sbjct: 80  VVTKPPYEITETGWGEFEIIIKIFFIDPNERPVTLYHLLKLFQS 123

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>POLG_LANVT (P29837) Genome polyprotein [Contains: Capsid protein C (Core|
           protein); Envelope protein M (Matrix protein); Major
           envelope protein E; Nonstructural protein 1 (NS1);
           Nonstructural protein 2A (NS2A); Flavivirin protease
           NS2B regulatory subunit;
          Length = 3414

 Score = 29.3 bits (64), Expect = 9.7
 Identities = 17/57 (29%), Positives = 23/57 (40%), Gaps = 3/57 (5%)
 Frame = +3

Query: 177 GKACGVTSEGETAKCKKVVC-DPSYLTNKVRKIGKVARAIAIMSH--PIPNTNESHS 338
           G  CG+  +G    C K  C D    T  V  + K+   I +  H       NE+HS
Sbjct: 382 GNHCGLFGKGSIVTCVKFTCEDKKKATGHVYDVNKITYTIKVEPHTGEFVAANETHS 438

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>MURC_AQUAE (O67373) UDP-N-acetylmuramate--L-alanine ligase (EC 6.3.2.8)|
           (UDP-N-acetylmuramoyl-L-alanine synthetase)
          Length = 454

 Score = 29.3 bits (64), Expect = 9.7
 Identities = 16/49 (32%), Positives = 25/49 (51%)
 Frame = +3

Query: 420 APKGKFIAFVSAEAESDNIQSELKPGIDLLGPVDELFFDMYDRYEPVNE 566
           A  G+    VS   ESD    +L+P + ++  VD+   D Y+ +E V E
Sbjct: 150 AKLGRGELLVSEADESDGSFLKLQPAVAVITNVDKEHLDFYENFERVKE 198

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>CITT_ECOLI (P0AE74) Citrate carrier (Citrate transporter) (Citrate/succinate|
           antiporter)
          Length = 487

 Score = 29.3 bits (64), Expect = 9.7
 Identities = 14/56 (25%), Positives = 27/56 (48%)
 Frame = -1

Query: 361 FCGKIIWTEWDSFVFGIGWLIIAIARATLPIFLTLLVKYEGSQTTFLHFAVSPSDV 194
           F    +W  + +F+F +G+ +  + R         LVK+ G +T  L +A+   D+
Sbjct: 99  FSSTTVWLVFGAFIFALGYEVSGLGRR----IALFLVKFMGKRTLTLGYAIVIIDI 150

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>CITT_ECO57 (P0AE75) Citrate carrier (Citrate transporter) (Citrate/succinate|
           antiporter)
          Length = 487

 Score = 29.3 bits (64), Expect = 9.7
 Identities = 14/56 (25%), Positives = 27/56 (48%)
 Frame = -1

Query: 361 FCGKIIWTEWDSFVFGIGWLIIAIARATLPIFLTLLVKYEGSQTTFLHFAVSPSDV 194
           F    +W  + +F+F +G+ +  + R         LVK+ G +T  L +A+   D+
Sbjct: 99  FSSTTVWLVFGAFIFALGYEVSGLGRR----IALFLVKFMGKRTLTLGYAIVIIDI 150

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>POLG_LANVY (P29838) Genome polyprotein [Contains: Capsid protein C (Core|
           protein); Envelope protein M (Matrix protein); Major
           envelope protein E] (Fragment)
          Length = 776

 Score = 29.3 bits (64), Expect = 9.7
 Identities = 17/57 (29%), Positives = 23/57 (40%), Gaps = 3/57 (5%)
 Frame = +3

Query: 177 GKACGVTSEGETAKCKKVVC-DPSYLTNKVRKIGKVARAIAIMSH--PIPNTNESHS 338
           G  CG+  +G    C K  C D    T  V  + K+   I +  H       NE+HS
Sbjct: 382 GNHCGLFGKGSIVTCVKFTCEDKKKATGHVYDVNKITYTIKVEPHTGEFVAANETHS 438


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.318    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 92,716,992
Number of Sequences: 219361
Number of extensions: 1974269
Number of successful extensions: 5751
Number of sequences better than 10.0: 39
Number of HSP's better than 10.0 without gapping: 5576
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 5721
length of database: 80,573,946
effective HSP length: 107
effective length of database: 57,102,319
effective search space used: 5596027262
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)

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full-length cDNA and EST

Clone Information

BLAST Search Result