ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日:2016年5月1日

Clone Information

BLAST Search Result

Clone Name bags7m21
Clone Library Name barley_pub

No. Definition Score
(bits)
E
Value
1TKT1_CANAL (O94039) Transketolase 1 (EC 2.2.1.1) (TK 1) 30 3.0
2WEE1_SCHPO (P07527) Mitosis inhibitor protein kinase wee1 (EC 2.... 30 3.9
3FUT2_ARATH (O81053) Probable fucosyltransferase 2 (EC 2.4.1.-) (... 30 3.9
4BUN2_DROME (Q24523) Protein bunched, class 2 isoform (Protein sh... 29 6.6
5YC81_CAEEL (Q19981) Hypothetical protein F33C8.1 precursor 29 8.6
6PMT4_TOBAC (Q9SEH4) Putrescine N-methyltransferase 4 (EC 2.1.1.5... 29 8.6
7PMT1_TOBAC (Q42963) Putrescine N-methyltransferase 1 (EC 2.1.1.5... 29 8.6

>TKT1_CANAL (O94039) Transketolase 1 (EC 2.2.1.1) (TK 1)|
          Length = 677

 Score = 30.4 bits (67), Expect = 3.0
 Identities = 15/45 (33%), Positives = 24/45 (53%)
 Frame = -2

Query: 368 PDHMTEMKRPWGSK*FWLEKLFQFCPKNVFSFSARNTPENVKADK 234
           PD + ++K+ WG K    E +  F P+ V  + A++  EN K  K
Sbjct: 267 PDDIKQLKKSWGFK----EDVDFFIPEEVSEYLAKHVSENQKVQK 307



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>WEE1_SCHPO (P07527) Mitosis inhibitor protein kinase wee1 (EC 2.7.11.1) (P107|
           protein kinase homolog)
          Length = 877

 Score = 30.0 bits (66), Expect = 3.9
 Identities = 22/69 (31%), Positives = 31/69 (44%)
 Frame = -2

Query: 281 FSFSARNTPENVKADKISWKLMFLLEMMVTSSRMAWKLIMPINQGSFQSTAWKKPTKEST 102
           F  S+++ P +  A K+  K  F       S R++   I P   GSF   A   P   ST
Sbjct: 182 FLQSSQHIPPSTPAQKLRKKNNF------DSFRISNSHISPFASGSFSPFATSSPNFLST 235

Query: 101 AGPNPPRSS 75
           + P PP S+
Sbjct: 236 STPAPPNSN 244



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>FUT2_ARATH (O81053) Probable fucosyltransferase 2 (EC 2.4.1.-) (AtFUT2)|
          Length = 539

 Score = 30.0 bits (66), Expect = 3.9
 Identities = 17/65 (26%), Positives = 26/65 (40%)
 Frame = -2

Query: 278 SFSARNTPENVKADKISWKLMFLLEMMVTSSRMAWKLIMPINQGSFQSTAWKKPTKESTA 99
           S       E +  ++ +W  M+LL +       AW     + QG     AW    +E+  
Sbjct: 425 SHEGHQQTEKLMHNRKAWAEMYLLSLTDKLVISAWSTFGYVAQGLGGLRAWILYKQENQT 484

Query: 98  GPNPP 84
            PNPP
Sbjct: 485 NPNPP 489



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>BUN2_DROME (Q24523) Protein bunched, class 2 isoform (Protein shortsighted)|
          Length = 1206

 Score = 29.3 bits (64), Expect = 6.6
 Identities = 18/48 (37%), Positives = 23/48 (47%)
 Frame = -1

Query: 510 GMAASSFLLATGLTSAVLELGPFPPYHQHAERHKGVHQNKYRNQEQGT 367
           G AA+S   ATG T+A       P +H H   H   H N  + Q+Q T
Sbjct: 284 GGAATS--AATGTTAAAGSHHHQPHHHHHHHHHHHQHHNHQQQQQQQT 329



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>YC81_CAEEL (Q19981) Hypothetical protein F33C8.1 precursor|
          Length = 1271

 Score = 28.9 bits (63), Expect = 8.6
 Identities = 17/64 (26%), Positives = 29/64 (45%)
 Frame = +2

Query: 179 PFCYW*PSSPGGTSISNLFCQPSHFLVYSLRRN*THS*DKTGRASQARITLIPKASSSRS 358
           P C W P       +S     P+ FLV+S R+      ++   A  +R   +P+A++  S
Sbjct: 733 PHCTWYPIDKASPCVSKEDLSPAFFLVHSRRKGKNRDPNQYQAADMSR---VPRAAAFNS 789

Query: 359 CGLV 370
             +V
Sbjct: 790 LAVV 793



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>PMT4_TOBAC (Q9SEH4) Putrescine N-methyltransferase 4 (EC 2.1.1.53) (PMT 4)|
          Length = 419

 Score = 28.9 bits (63), Expect = 8.6
 Identities = 14/34 (41%), Positives = 17/34 (50%), Gaps = 1/34 (2%)
 Frame = -1

Query: 432 HQHA-ERHKGVHQNKYRNQEQGTRPHDRDEEALG 334
           HQ+    H+  HQN    Q+ GT  HD   E LG
Sbjct: 90  HQNGTSEHQNGHQNGTSEQQNGTISHDNGNELLG 123



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>PMT1_TOBAC (Q42963) Putrescine N-methyltransferase 1 (EC 2.1.1.53) (PMT 1)|
           (A411)
          Length = 375

 Score = 28.9 bits (63), Expect = 8.6
 Identities = 14/34 (41%), Positives = 17/34 (50%), Gaps = 1/34 (2%)
 Frame = -1

Query: 432 HQHAE-RHKGVHQNKYRNQEQGTRPHDRDEEALG 334
           HQ+    H+  HQN    Q+ GT  HD   E LG
Sbjct: 46  HQNGTFEHRNGHQNGTSEQQNGTISHDNGNELLG 79


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.318    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 68,330,806
Number of Sequences: 219361
Number of extensions: 1337131
Number of successful extensions: 3900
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 3759
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 3888
length of database: 80,573,946
effective HSP length: 104
effective length of database: 57,760,402
effective search space used: 3812186532
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
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