ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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| Clone Name | bags7m03 |
|---|---|
| Clone Library Name | barley_pub |
>RL6_MESCR (P34091) 60S ribosomal protein L6 (YL16-like)| Length = 234 Score = 113 bits (282), Expect = 2e-25 Identities = 52/88 (59%), Positives = 68/88 (77%) Frame = +1 Query: 1 LDISKVNMQKFDDKYFAREKKTRAKKSEGELFESEKEATKNLPDFKKDDQKVIDTELIKA 180 +DIS VN++KFDDKYF ++ + + KK EGE FE+EK+ LP KKDDQK +D L+KA Sbjct: 147 VDISGVNVEKFDDKYFGKKAEKKNKKGEGEFFEAEKKEVNVLPQEKKDDQKAVDVALLKA 206 Query: 181 IDAVPDLKSYLGARFSLRDGDKPHEMTF 264 I+ VP+LK+YLGARFSL+ G KPHE+ F Sbjct: 207 IEGVPELKAYLGARFSLKAGMKPHELVF 234
>RL6B_YEAST (P05739) 60S ribosomal protein L6-B (L17) (YL16) (RP18)| Length = 175 Score = 77.4 bits (189), Expect = 1e-14 Identities = 38/88 (43%), Positives = 57/88 (64%) Frame = +1 Query: 1 LDISKVNMQKFDDKYFAREKKTRAKKSEGELFESEKEATKNLPDFKKDDQKVIDTELIKA 180 + + VN++KF+ +YFA+EK T+ +K E LF ++ TK + + +DQKV+D L+ Sbjct: 90 VSVEGVNVEKFNVEYFAKEKLTKKEKKEANLFPEQQ--TKEIKTERVEDQKVVDKALLAE 147 Query: 181 IDAVPDLKSYLGARFSLRDGDKPHEMTF 264 I P LK YL A FSL++GDKPH + F Sbjct: 148 IKKTPLLKQYLSASFSLKNGDKPHLLKF 175
>RL6A_YEAST (Q02326) 60S ribosomal protein L6-A (L17) (YL16) (RP18)| Length = 175 Score = 76.3 bits (186), Expect = 3e-14 Identities = 38/88 (43%), Positives = 56/88 (63%) Frame = +1 Query: 1 LDISKVNMQKFDDKYFAREKKTRAKKSEGELFESEKEATKNLPDFKKDDQKVIDTELIKA 180 + + VN++KF+ +YFA+EK T+ +K E LF ++ K + + +DQKV+D LI Sbjct: 90 VSVEGVNVEKFNVEYFAKEKLTKKEKKEANLFPEQQN--KEIKAERVEDQKVVDKALIAE 147 Query: 181 IDAVPDLKSYLGARFSLRDGDKPHEMTF 264 I P LK YL A FSL++GDKPH + F Sbjct: 148 IKKTPLLKQYLSASFSLKNGDKPHMLKF 175
>RL6_SCHPO (P79071) 60S ribosomal protein L6| Length = 194 Score = 73.9 bits (180), Expect = 1e-13 Identities = 36/88 (40%), Positives = 57/88 (64%) Frame = +1 Query: 1 LDISKVNMQKFDDKYFAREKKTRAKKSEGELFESEKEATKNLPDFKKDDQKVIDTELIKA 180 +D+S V+++KF YFA++K++ K + E F +E LP + DQK +D +L+ A Sbjct: 108 IDVSGVSVEKFTKAYFAKQKRSGPVKKD-EAFFAENAPKNALPAERIADQKAVDAKLLPA 166 Query: 181 IDAVPDLKSYLGARFSLRDGDKPHEMTF 264 I A+P++K YL A F+L +GD+PH M F Sbjct: 167 IKAIPNMKEYLAASFALSNGDRPHLMKF 194
>RL6_RAT (P21533) 60S ribosomal protein L6 (Neoplasm-related protein C140)| Length = 297 Score = 70.1 bits (170), Expect = 2e-12 Identities = 35/89 (39%), Positives = 59/89 (66%), Gaps = 1/89 (1%) Frame = +1 Query: 1 LDISKVNMQK-FDDKYFAREKKTRAKKSEGELFESEKEATKNLPDFKKDDQKVIDTELIK 177 +DISKV + K D YF ++ + + EGE+F++EKE + + + +K DQK +D++++ Sbjct: 210 VDISKVKIPKHLTDAYFKKKPLRKPRHQEGEIFDTEKEKYE-ITEQRKADQKAVDSQILP 268 Query: 178 AIDAVPDLKSYLGARFSLRDGDKPHEMTF 264 I AVP L+ YL ++FSL +G PH++ F Sbjct: 269 KIKAVPQLQGYLRSQFSLTNGMYPHKLVF 297
>RL6_CHILA (Q6QMZ4) 60S ribosomal protein L6| Length = 287 Score = 68.2 bits (165), Expect = 7e-12 Identities = 34/89 (38%), Positives = 58/89 (65%), Gaps = 1/89 (1%) Frame = +1 Query: 1 LDISKVNMQK-FDDKYFAREKKTRAKKSEGELFESEKEATKNLPDFKKDDQKVIDTELIK 177 +DIS V + K D YF ++K + + EGE+F++EKE + + + +K DQK +D++++ Sbjct: 200 IDISNVKIPKHLTDAYFKKKKLRKPRHQEGEIFDTEKERYQ-ISEQRKVDQKAVDSQILP 258 Query: 178 AIDAVPDLKSYLGARFSLRDGDKPHEMTF 264 I AVP L+ YL + F+L +G PH++ F Sbjct: 259 KIKAVPQLRGYLRSVFALTNGIYPHKLVF 287
>RL6_MOUSE (P47911) 60S ribosomal protein L6 (TAX-responsive enhancer| element-binding protein 107) (TAXREB107) Length = 295 Score = 67.8 bits (164), Expect = 1e-11 Identities = 34/89 (38%), Positives = 58/89 (65%), Gaps = 1/89 (1%) Frame = +1 Query: 1 LDISKVNMQK-FDDKYFAREKKTRAKKSEGELFESEKEATKNLPDFKKDDQKVIDTELIK 177 +DIS V + K D YF +++ + + EGE+F++EKE + + + +K DQK +D +++ Sbjct: 208 VDISDVKIPKHLTDAYFKKKQLRKPRHQEGEIFDTEKEKYE-ITEQRKADQKAVDLQILP 266 Query: 178 AIDAVPDLKSYLGARFSLRDGDKPHEMTF 264 I AVP L+ YL ++FSL +G PH++ F Sbjct: 267 KIKAVPQLQGYLRSQFSLTNGMYPHKLVF 295
>RL6_HUMAN (Q02878) 60S ribosomal protein L6 (TAX-responsive enhancer| element-binding protein 107) (TAXREB107) (Neoplasm-related protein C140) Length = 287 Score = 67.4 bits (163), Expect = 1e-11 Identities = 33/89 (37%), Positives = 58/89 (65%), Gaps = 1/89 (1%) Frame = +1 Query: 1 LDISKVNMQK-FDDKYFAREKKTRAKKSEGELFESEKEATKNLPDFKKDDQKVIDTELIK 177 +DIS V + K D YF ++K + + EGE+F++EKE + + + +K DQK +D++++ Sbjct: 200 IDISNVKIPKHLTDAYFKKKKLRKPRHQEGEIFDTEKEKYE-ITEQRKIDQKAVDSQILP 258 Query: 178 AIDAVPDLKSYLGARFSLRDGDKPHEMTF 264 I A+P L+ YL + F+L +G PH++ F Sbjct: 259 KIKAIPQLQGYLRSVFALTNGIYPHKLVF 287
>RL6_PIG (Q2YGT9) 60S ribosomal protein L6| Length = 283 Score = 67.0 bits (162), Expect = 2e-11 Identities = 33/89 (37%), Positives = 59/89 (66%), Gaps = 1/89 (1%) Frame = +1 Query: 1 LDISKVNM-QKFDDKYFAREKKTRAKKSEGELFESEKEATKNLPDFKKDDQKVIDTELIK 177 +DIS V + + D YF ++K + + EGE+F++EKE + + + +K DQK +D+++++ Sbjct: 196 IDISGVKIPEHLTDAYFKKKKLRKPRHQEGEIFDTEKEKYE-ISEQRKVDQKAVDSQILR 254 Query: 178 AIDAVPDLKSYLGARFSLRDGDKPHEMTF 264 I AVP L+ YL + F+L +G PH++ F Sbjct: 255 RIKAVPQLQGYLRSVFALTNGIYPHKLVF 283
>RL6_BOVIN (Q58DQ3) 60S ribosomal protein L6| Length = 286 Score = 65.5 bits (158), Expect = 5e-11 Identities = 32/89 (35%), Positives = 59/89 (66%), Gaps = 1/89 (1%) Frame = +1 Query: 1 LDISKVNM-QKFDDKYFAREKKTRAKKSEGELFESEKEATKNLPDFKKDDQKVIDTELIK 177 +DIS V + + D YF ++K + + EGE+F++E+E + + + +K DQK +D+++++ Sbjct: 199 IDISGVKIPEHLTDTYFKKKKLRKPRHQEGEIFDTEREKYE-ITEQRKVDQKAVDSQILR 257 Query: 178 AIDAVPDLKSYLGARFSLRDGDKPHEMTF 264 I AVP L+ YL + F+L +G PH++ F Sbjct: 258 RIKAVPQLQGYLRSVFALTNGIYPHKVVF 286
>RL6_CAEEL (P47991) 60S ribosomal protein L6| Length = 217 Score = 45.1 bits (105), Expect = 7e-05 Identities = 29/83 (34%), Positives = 44/83 (53%), Gaps = 3/83 (3%) Frame = +1 Query: 25 QKFDDKYFAREKKTRAKKSEGELFESEKEATKNLPDFKKDDQKVIDTELIKAIDAVPDLK 204 + +D+YF R K+ A+K+ +F S K + + +K D K +D ++ AI P+ K Sbjct: 138 EHINDEYFKR--KSTAQKTGKNIFASGK-TEYTVSEQRKKDIKTVDAPILAAIKKHPEHK 194 Query: 205 ---SYLGARFSLRDGDKPHEMTF 264 YLG RFSL PH+M F Sbjct: 195 FLFGYLGTRFSLGKNQYPHKMQF 217
>CYL1_BOVIN (P35662) Cylicin-1 (Cylicin I) (Multiple-band polypeptide I)| Length = 667 Score = 33.5 bits (75), Expect = 0.20 Identities = 27/86 (31%), Positives = 41/86 (47%), Gaps = 10/86 (11%) Frame = +1 Query: 19 NMQKFDDKYFAREKKTRAKK----------SEGELFESEKEATKNLPDFKKDDQKVIDTE 168 N +K K +KK AKK SEG+ +S+K++ K+ D KKDDQK + Sbjct: 442 NAKKDSKKGKKDDKKKDAKKDAVSTDADSESEGDAKKSKKDSKKDKKDLKKDDQKKPAMK 501 Query: 169 LIKAIDAVPDLKSYLGARFSLRDGDK 246 ++ + D +S R S +D K Sbjct: 502 SKESTETESDWESKKVKRDSKKDTKK 527
>CYLC2_HUMAN (Q14093) Cylicin-2 (Cylicin II) (Multiple-band polypeptide II)| Length = 348 Score = 32.0 bits (71), Expect = 0.59 Identities = 17/48 (35%), Positives = 26/48 (54%) Frame = +1 Query: 37 DKYFAREKKTRAKKSEGELFESEKEATKNLPDFKKDDQKVIDTELIKA 180 DK + + K A +SEGE +EK++ K D KK I+ + +KA Sbjct: 192 DKKDSNKGKDSATESEGEKGGTEKDSKKGKKDSKKGKDSAIELQAVKA 239
>RPOB_CAMJR (Q5HVY9) DNA-directed RNA polymerase beta chain (EC 2.7.7.6) (RNAP| beta subunit) (Transcriptase beta chain) (RNA polymerase beta subunit) Length = 1378 Score = 30.0 bits (66), Expect = 2.3 Identities = 17/68 (25%), Positives = 31/68 (45%), Gaps = 9/68 (13%) Frame = +1 Query: 133 FKKDDQKVIDTELIKAIDAVPDLKSYLGARFSLRD---------GDKPHEMTF*VIWYKF 285 FK+++ + +L+ +PD S+L + +D P M F + YK Sbjct: 161 FKEEESSTVANKLVYTAQIIPDRGSWLYFEYDAKDVLYVRINKRRKVPVTMLFRALGYKK 220 Query: 286 QDLWKVFF 309 QD+ K+F+ Sbjct: 221 QDIIKLFY 228
>RPOB_CAMJE (Q46124) DNA-directed RNA polymerase beta chain (EC 2.7.7.6) (RNAP| beta subunit) (Transcriptase beta chain) (RNA polymerase beta subunit) Length = 1378 Score = 30.0 bits (66), Expect = 2.3 Identities = 17/68 (25%), Positives = 31/68 (45%), Gaps = 9/68 (13%) Frame = +1 Query: 133 FKKDDQKVIDTELIKAIDAVPDLKSYLGARFSLRD---------GDKPHEMTF*VIWYKF 285 FK+++ + +L+ +PD S+L + +D P M F + YK Sbjct: 161 FKEEESSTVANKLVYTAQIIPDRGSWLYFEYDAKDVLYVRINKRRKVPVTMLFRALGYKK 220 Query: 286 QDLWKVFF 309 QD+ K+F+ Sbjct: 221 QDIIKLFY 228
>GGLO_RAT (P10867) L-gulonolactone oxidase (EC 1.1.3.8) (LGO)| (L-gulono-gamma-lactone oxidase) (GLO) Length = 439 Score = 29.6 bits (65), Expect = 2.9 Identities = 13/27 (48%), Positives = 17/27 (62%) Frame = -2 Query: 327 PEHTLEKKDFPQILKLVPDNLEGHLMR 247 P+ L++ FP LK V DNL+ HL R Sbjct: 185 PQFHLQETSFPSTLKEVLDNLDSHLKR 211
>OVGP1_PIG (Q28990) Oviduct-specific glycoprotein precursor (Oviductal| glycoprotein) (Oviductin) (Estrogen-dependent oviduct protein) (POSP-E3) Length = 527 Score = 28.9 bits (63), Expect = 5.0 Identities = 12/21 (57%), Positives = 14/21 (66%) Frame = -1 Query: 154 PSGHPS*SRADSSLPPSPTQT 92 P GHPS + D S+PP P QT Sbjct: 481 PVGHPSVTPGDMSVPPVPIQT 501
>MURA_BDEBA (Q6MRK7) UDP-N-acetylglucosamine 1-carboxyvinyltransferase (EC| 2.5.1.7) (Enoylpyruvate transferase) (UDP-N-acetylglucosamine enolpyruvyl transferase) (EPT) Length = 414 Score = 28.9 bits (63), Expect = 5.0 Identities = 12/27 (44%), Positives = 17/27 (62%) Frame = -3 Query: 407 LPIIFSKYLTGRNQRFTNQPKKSEVQN 327 LPI+FS L N FTN PK ++++ Sbjct: 23 LPILFSTLLAEGNHVFTNMPKLKDIES 49
>SFR12_MOUSE (Q8BZX4) Splicing factor, arginine/serine-rich 12| (Serine-arginine-rich splicing regulatory protein 86) (SRrp86) Length = 494 Score = 28.9 bits (63), Expect = 5.0 Identities = 16/45 (35%), Positives = 21/45 (46%) Frame = +1 Query: 52 REKKTRAKKSEGELFESEKEATKNLPDFKKDDQKVIDTELIKAID 186 RE+ T KKS G+ EK P +K+ K D + KA D Sbjct: 417 RERSTSTKKSSGDRDGKEKVEKSTTPVKEKEHSKESDATVSKAAD 461
>PSBB_EUGGR (P14813) Photosystem II P680 chlorophyll A apoprotein (CP-47| protein) Length = 508 Score = 28.9 bits (63), Expect = 5.0 Identities = 12/27 (44%), Positives = 17/27 (62%) Frame = -3 Query: 206 LLRSGTASIALINSVSMTFWSSFLKSG 126 LLR G L +S++ FWS+F+ SG Sbjct: 228 LLRMGNIETVLSSSIAAVFWSAFVVSG 254
>RL19_DEIRA (Q9RWB4) 50S ribosomal protein L19| Length = 166 Score = 28.9 bits (63), Expect = 5.0 Identities = 14/38 (36%), Positives = 23/38 (60%), Gaps = 1/38 (2%) Frame = +1 Query: 61 KTRAKKSEGELFES-EKEATKNLPDFKKDDQKVIDTEL 171 +T K + GEL E++ T+ LPDF+ D +DT++ Sbjct: 2 QTHIKINRGELLRGIEQDHTRQLPDFRPGDTVRVDTKV 39
>ATPF_BUCAI (P57120) ATP synthase B chain (EC 3.6.3.14)| Length = 161 Score = 28.5 bits (62), Expect = 6.6 Identities = 13/52 (25%), Positives = 29/52 (55%) Frame = +1 Query: 52 REKKTRAKKSEGELFESEKEATKNLPDFKKDDQKVIDTELIKAIDAVPDLKS 207 +E T AKK+ EL+ EK+ +N+ D K+ ++++ + + + D ++ Sbjct: 41 KESLTNAKKARDELYILEKKIHQNIIDAKQKASNILNSANKQKVSILEDARN 92
>MYPT1_HUMAN (O14974) Protein phosphatase 1 regulatory subunit 12A (Myosin| phosphatase-targeting subunit 1) (Myosin phosphatase target subunit 1) (Protein phosphatase myosin-binding subunit) Length = 1030 Score = 28.5 bits (62), Expect = 6.6 Identities = 16/54 (29%), Positives = 28/54 (51%) Frame = +1 Query: 1 LDISKVNMQKFDDKYFAREKKTRAKKSEGELFESEKEATKNLPDFKKDDQKVID 162 L+ + ++F D+ +K + E + E E+E K LPD K D+Q++ D Sbjct: 964 LEKATQRQERFADRSLLEMEKRERRALERRISEMEEEL-KMLPDLKADNQRLKD 1016
>FAS1_SCHAM (P10675) Fasciclin-1 precursor (Fasciclin I) (FAS I) (FCN)| Length = 662 Score = 28.5 bits (62), Expect = 6.6 Identities = 19/59 (32%), Positives = 29/59 (49%), Gaps = 1/59 (1%) Frame = +1 Query: 1 LDISKVNMQKFDDKYFAREKKTRAK-KSEGELFESEKEATKNLPDFKKDDQKVIDTELI 174 LD+ ++ F + F +K+ K + + F E K LP +K DQKVID +I Sbjct: 180 LDLGLHRVRSFRQRVFQNQKQNDFKLEGKHTFFIPVDEGFKPLPRPEKIDQKVIDGHII 238
>HUB1_SCHPO (O94650) Ubiquitin-like modifier hub1| Length = 73 Score = 28.5 bits (62), Expect = 6.6 Identities = 12/36 (33%), Positives = 19/36 (52%) Frame = -2 Query: 288 LKLVPDNLEGHLMRLVAIPEGEPGTKITFKVWDSIY 181 +K +PD+ G +LVA G +I K W S++ Sbjct: 16 VKCMPDDTVGDFKKLVAAQTGTDPRRIVLKKWHSVF 51
>MYPT1_RAT (Q10728) Protein phosphatase 1 regulatory subunit 12A (Myosin| phosphatase-targeting subunit 1) (Myosin phosphatase target subunit 1) (Protein phosphatase myosin-binding subunit) (MBSP) (Serine/threonine protein phosphatase PP1 smooth muscle reg Length = 1032 Score = 28.5 bits (62), Expect = 6.6 Identities = 16/54 (29%), Positives = 28/54 (51%) Frame = +1 Query: 1 LDISKVNMQKFDDKYFAREKKTRAKKSEGELFESEKEATKNLPDFKKDDQKVID 162 L+ + ++F D+ +K + E + E E+E K LPD K D+Q++ D Sbjct: 966 LEKATQRQERFADRSLLEMEKRERRALERRISEMEEEL-KMLPDLKADNQRLKD 1018
>BIR1_SCHPO (O14064) Protein bir1 (Chromosome segregation protein cut17)| Length = 997 Score = 28.5 bits (62), Expect = 6.6 Identities = 14/48 (29%), Positives = 28/48 (58%) Frame = +1 Query: 103 EKEATKNLPDFKKDDQKVIDTELIKAIDAVPDLKSYLGARFSLRDGDK 246 EKEA L + +K ++K+ + + + DA PD + +R S+++G + Sbjct: 779 EKEANHELENIEKIEEKLTEVDKVSLSDAFPD-QEIKNSRTSVQNGTR 825
>ATRX_CAEEL (Q9U7E0) Transcriptional regulator ATRX homolog (EC 3.6.1.-)| (ATP-dependent helicase xnp-1) (X-linked nuclear protein 1) Length = 1359 Score = 28.5 bits (62), Expect = 6.6 Identities = 23/86 (26%), Positives = 35/86 (40%) Frame = +1 Query: 4 DISKVNMQKFDDKYFAREKKTRAKKSEGELFESEKEATKNLPDFKKDDQKVIDTELIKAI 183 D K + DD+ +++KK K + +K N D ++D + DT + Sbjct: 843 DSGKSVVLSSDDEGSSKKKKNGNKPEIKKTAPQKKRKFLNSDDEDEEDGE--DTAMAILQ 900 Query: 184 DAVPDLKSYLGARFSLRDGDKPHEMT 261 D + K G LRD D P E T Sbjct: 901 DGIRQSKRLAGEEADLRDTDTPPEYT 926 Score = 28.5 bits (62), Expect = 6.6 Identities = 20/57 (35%), Positives = 30/57 (52%) Frame = +1 Query: 34 DDKYFAREKKTRAKKSEGELFESEKEATKNLPDFKKDDQKVIDTELIKAIDAVPDLK 204 D+K + KK KK++ E ESE E K + KK +KV+ E ++ D P+ K Sbjct: 189 DEKPSKKSKKGLKKKAKSES-ESESEDEKEVKKSKKKSKKVVKKE-SESEDEAPEKK 243
>PHF20_HUMAN (Q9BVI0) PHD finger protein 20 (Hepatocellular carcinoma-associated| antigen 58) (Glioma-expressed antigen 2) (Transcription factor TZP) (Novel zinc finger protein) Length = 1012 Score = 28.1 bits (61), Expect = 8.6 Identities = 19/51 (37%), Positives = 31/51 (60%), Gaps = 3/51 (5%) Frame = +1 Query: 16 VNMQKF-DDKYFAREKKTRAKKSEGELFESE--KEATKNLPDFKKDDQKVI 159 VN++K +DK EK+ + EG+L SE K + K+LP +K+D++ I Sbjct: 174 VNVKKDKEDKPLKTEKRPKQPDKEGKLICSEKGKVSEKSLPKNEKEDKENI 224
>MLP2_YEAST (P40457) Protein MLP2 (Myosin-like protein 2)| Length = 1679 Score = 28.1 bits (61), Expect = 8.6 Identities = 22/68 (32%), Positives = 34/68 (50%), Gaps = 4/68 (5%) Frame = +1 Query: 13 KVNMQKFDDKYFAREKKTRAKKSEGEL---FESEKEATKNLPDFKKDDQKVIDTELIKAI 183 KVNM+K D+ K KK + L SE E +K++ KK+ K + E ++ I Sbjct: 1389 KVNMEKEKDRIIDERTKEFEKKLQETLNKSTSSEAEYSKDIETLKKEWLKEYEDETLRRI 1448 Query: 184 -DAVPDLK 204 +A +LK Sbjct: 1449 KEAEENLK 1456
>GGLO_PIG (Q8HXW0) L-gulonolactone oxidase (EC 1.1.3.8) (LGO)| (L-gulono-gamma-lactone oxidase) (GLO) Length = 439 Score = 28.1 bits (61), Expect = 8.6 Identities = 12/27 (44%), Positives = 17/27 (62%) Frame = -2 Query: 327 PEHTLEKKDFPQILKLVPDNLEGHLMR 247 P+ L++ FP LK V DNL+ HL + Sbjct: 185 PQFHLQETTFPSTLKEVLDNLDSHLKK 211
>GGLO_BOVIN (Q3ZC33) L-gulonolactone oxidase (EC 1.1.3.8) (LGO)| (L-gulono-gamma-lactone oxidase) (GLO) Length = 439 Score = 28.1 bits (61), Expect = 8.6 Identities = 12/27 (44%), Positives = 17/27 (62%) Frame = -2 Query: 327 PEHTLEKKDFPQILKLVPDNLEGHLMR 247 P+ L++ FP LK V DNL+ HL + Sbjct: 185 PQFHLQETTFPSTLKEVLDNLDSHLKK 211
>YKF4_YEAST (P35732) Hypothetical 84.0 kDa protein in NUP120-CSE4 intergenic| region Length = 738 Score = 28.1 bits (61), Expect = 8.6 Identities = 16/35 (45%), Positives = 19/35 (54%) Frame = +1 Query: 49 AREKKTRAKKSEGELFESEKEATKNLPDFKKDDQK 153 A K KK+E L E+ E K + D KKDDQK Sbjct: 248 ATPKPKAVKKTESPL-ENVAELKKEISDIKKDDQK 281 Database: uniprot_sprot.fasta Posted date: May 25, 2006 5:36 PM Number of letters in database: 80,573,946 Number of sequences in database: 219,361 Lambda K H 0.318 0.135 0.401 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 48,612,523 Number of Sequences: 219361 Number of extensions: 881144 Number of successful extensions: 3012 Number of sequences better than 10.0: 33 Number of HSP's better than 10.0 without gapping: 2916 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 2993 length of database: 80,573,946 effective HSP length: 100 effective length of database: 58,637,846 effective search space used: 2228238148 frameshift window, decay const: 50, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits)
