>PITX1_DROME (O18400) Pituitary homeobox 1 homolog (D-PTX1)|
          Length = 509

 Score = 34.7 bits (78), Expect = 0.16
 Identities = 20/64 (31%), Positives = 29/64 (45%)
 Frame = +1

Query: 244 QTEAIKSPCHDEPLLTADSNCHPGSPTLSPKHERAAKRQRSSDAEFPEAELSLPQHIFES 423
           +TE I S  HDEP+ T+            PK+++  KRQR     F   +L   +H F  
Sbjct: 235 KTENISSSGHDEPMTTSGEE---------PKNDKKNKRQRRQRTHFTSQQLQELEHTFSR 285

Query: 424 SSGP 435
           +  P
Sbjct: 286 NRYP 289

>RW1_MOUSE (O70472) RW1 protein|
          Length = 1829

 Score = 31.2 bits (69), Expect = 1.8
 Identities = 19/65 (29%), Positives = 28/65 (43%)
 Frame = +1

Query: 232  DSGSQTEAIKSPCHDEPLLTADSNCHPGSPTLSPKHERAAKRQRSSDAEFPEAELSLPQH 411
            DS S T    +P   EPLL  D+  H G P +  K E    + +    +   A+  +P  
Sbjct: 1370 DSSSTTTETSNP-DTEPLLREDTEKHKGRPAVPEKQESELSQGKPKSKKLLNAKKEIPTD 1428

Query: 412  IFESS 426
            +  SS
Sbjct: 1429 VKGSS 1433

>UBP53_MOUSE (P15975) Inactive ubiquitin carboxyl-terminal hydrolase 53|
            (Ubiquitin-specific peptidase 53) (Per-hexamer repeat
            protein 3)
          Length = 1069

 Score = 30.0 bits (66), Expect = 4.0
 Identities = 26/89 (29%), Positives = 35/89 (39%), Gaps = 13/89 (14%)
 Frame = +1

Query: 223  FKRDSGSQTEAIKSPCHDEPLLTADSNCHPGSPTLSPKHERAAKRQR------SSDAEFP 384
            +  +S S+   + S C+ +       +CH   P L PK    A   R      S D    
Sbjct: 887  YSDNSLSRELTLLSACNADSCQMPKLHCHRSPPPLPPKKYSTASAPRLERVGLSPDVGVT 946

Query: 385  EA----ELSLPQHIFESSSGP---GVPAM 450
            EA      SLP+H    +SGP   G P M
Sbjct: 947  EAFNTNPSSLPKHSLSPASGPSLEGSPCM 975

>DCR1C_RAT (Q5XIX3) Artemis protein (EC 3.1.-.-) (DNA cross-link repair 1C|
           protein) (SNM1-like protein)
          Length = 698

 Score = 30.0 bits (66), Expect = 4.0
 Identities = 21/63 (33%), Positives = 30/63 (47%), Gaps = 3/63 (4%)
 Frame = +1

Query: 235 SGSQTEAIKSPCHDEPLLTADSNCHPGSPTLSPKHERAAKRQRSSDAEFP---EAELSLP 405
           SG++   +  PC +EP   +     P   +L+      A  Q SSD E P   EAEL  P
Sbjct: 615 SGAEVNGV--PCIEEPDTVSGRKSSPEKTSLTSTQ---ADSQSSSDFEIPSTPEAELPKP 669

Query: 406 QHI 414
           +H+
Sbjct: 670 EHL 672

>POBB_PSEPS (Q52186) Phenoxybenzoate dioxygenase beta subunit (EC 1.-.-.-)|
           (4-carboxydiphenyl ether;phenoxybenzoate dioxygenase
           beta subunit)
          Length = 319

 Score = 29.6 bits (65), Expect = 5.3
 Identities = 18/50 (36%), Positives = 24/50 (48%)
 Frame = -3

Query: 405 RKGQLGLRELGVAASLPLCCPLVLRTESRRTGMTVGICC*QRFIVTWTLD 256
           ++G  G+ E  V A +P    LVL  + R  G T+ ICC        TLD
Sbjct: 269 QQGVCGICETAVLAGVPDHRDLVLSDQERAAGRTMMICCSGSKTAELTLD 318

>VGLX_EHV1V (Q6S6W0) Glycoprotein X precursor|
          Length = 866

 Score = 29.3 bits (64), Expect = 6.9
 Identities = 26/90 (28%), Positives = 38/90 (42%), Gaps = 7/90 (7%)
 Frame = +1

Query: 124 ATVTASSDQFPDSERTDXXXXXXXXXXXXQGAAFKRDSGSQTEA---IKSPCHD--EPLL 288
           +T T S+DQF  S  +              G     +S S TEA   + S  ++  E L 
Sbjct: 454 STATPSTDQFTGSSASTESDSTDSSTVPTTGTESITESSSTTEASTNLGSSTYESTEALE 513

Query: 289 TADSNCHPG--SPTLSPKHERAAKRQRSSD 372
           T D N   G  +P+ SP+    A  Q++ D
Sbjct: 514 TPDGNTTSGNTTPSPSPRTPSFADTQQTPD 543

>VGLX_EHV1B (P28968) Glycoprotein X precursor|
          Length = 797

 Score = 29.3 bits (64), Expect = 6.9
 Identities = 26/90 (28%), Positives = 38/90 (42%), Gaps = 7/90 (7%)
 Frame = +1

Query: 124 ATVTASSDQFPDSERTDXXXXXXXXXXXXQGAAFKRDSGSQTEA---IKSPCHD--EPLL 288
           +T T S+DQF  S  +              G     +S S TEA   + S  ++  E L 
Sbjct: 385 STATPSTDQFTGSSASTESDSTDSSTVPTTGTESITESSSTTEASTNLGSSTYESTEALE 444

Query: 289 TADSNCHPG--SPTLSPKHERAAKRQRSSD 372
           T D N   G  +P+ SP+    A  Q++ D
Sbjct: 445 TPDGNTTSGNTTPSPSPRTPSFADTQQTPD 474

>TNFA_SHEEP (P23383) Tumor necrosis factor precursor (TNF-alpha) (Tumor|
           necrosis factor ligand superfamily member 2) (TNF-a)
           (Cachectin) [Contains: Tumor necrosis factor, membrane
           form; Tumor necrosis factor, soluble form]
          Length = 234

 Score = 28.9 bits (63), Expect = 9.0
 Identities = 19/60 (31%), Positives = 30/60 (50%)
 Frame = +1

Query: 253 AIKSPCHDEPLLTADSNCHPGSPTLSPKHERAAKRQRSSDAEFPEAELSLPQHIFESSSG 432
           AIKSPCH E L  A++      P   P ++    +    D     AE++LP+++  + SG
Sbjct: 173 AIKSPCHRETLEGAEA-----KPWYEPIYQGGVFQLEKGDR--LSAEINLPEYLDYAESG 225

>TARA_HUMAN (Q9H2D6) TRIO and F-actin-binding protein (Protein Tara)|
           (Trio-associated repeat on actin)
          Length = 2365

 Score = 28.9 bits (63), Expect = 9.0
 Identities = 13/44 (29%), Positives = 23/44 (52%)
 Frame = -1

Query: 500 PKCRCREANDPRSRAPNIAGTPGPELDSKICCGRDNSASGNSAS 369
           P+  C + ++PR+ +PN A    P   +  C  RDN  +  ++S
Sbjct: 526 PRTSCAQRDNPRASSPNRAARDNP---TTSCAQRDNPRASRTSS 566

>NCOR1_HUMAN (O75376) Nuclear receptor corepressor 1 (N-CoR1) (N-CoR)|
          Length = 2440

 Score = 28.9 bits (63), Expect = 9.0
 Identities = 25/79 (31%), Positives = 36/79 (45%), Gaps = 2/79 (2%)
 Frame = +1

Query: 211  QGAAFKRDSGSQTEAIKSPCHDEPLLTADSNCHPGSPTLS--PKHERAAKRQRSSDAEFP 384
            QG   K D+ S   AIK   + + L+T  S    G P L   P++ +  +R +  D +  
Sbjct: 1384 QGTPIKFDNNSGQSAIKH--NVKSLITGPSKLSRGMPPLEIVPENIKVVERGKYEDVKAG 1441

Query: 385  EAELSLPQHIFESSSGPGV 441
            E   S  +H    SSGP V
Sbjct: 1442 ETVRS--RHTSVVSSGPSV 1458


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.317    0.132    0.387 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 68,345,717
Number of Sequences: 219361
Number of extensions: 1282331
Number of successful extensions: 3945
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 3822
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 3944
length of database: 80,573,946
effective HSP length: 105
effective length of database: 57,541,041
effective search space used: 3970331829
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)