ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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| Clone Name | bags7m01 |
|---|---|
| Clone Library Name | barley_pub |
>dbj|AK066607.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013071P10, full insert sequence Length = 2344 Score = 468 bits (236), Expect = e-128 Identities = 479/560 (85%) Strand = Plus / Plus Query: 49 gagccacgcgtgacagagcatattgaaaatatcataaagttaatcacagagataatcaag 108 |||||||| ||||| || || |||||| |||| ||| |||| || || ||||||| || Sbjct: 843 gagccacgtgtgacggatcacattgaacatattatagagttgataaccaagataatggag 902 Query: 109 aatggcaaggcctatgttgtagacggtgatgtttacttctccgtcgacaattttcctgaa 168 ||||| || ||||||| | | || || ||||||||||| || || || | ||| |||| Sbjct: 903 aatgggaaagcctatgctatggaaggagatgtttacttttcagttgatactttccctgtg 962 Query: 169 tatctgagcttatcgggcaggatcttagatcacaatcgtgctggttcacgggttgctgtc 228 ||||| || ||||| || |||| |||||||| |||| ||||||||| |||||||||||| Sbjct: 963 tatctcagtttatctggaaggaagttagatcataatcttgctggttcgcgggttgctgtc 1022 Query: 229 gatacaagaaagcggaaccctgcagactttgcgttatggaaggctgctaaggaaggtgag 288 ||||||||||||||||||||||||||||||||| | |||||||||||||||||||| || Sbjct: 1023 gatacaagaaagcggaaccctgcagactttgcgctgtggaaggctgctaaggaaggcgaa 1082 Query: 289 ccttcttgggagagcccttggggtaacggaagaccaggatggcatattgaatgcagtgca 348 |||| ||||| ||||| ||||| || |||||||||||||||||||||||||||||| Sbjct: 1083 cctttctgggatagcccatggggccgtggtagaccaggatggcatattgaatgcagtgca 1142 Query: 349 atgagtgctcactatttagggcatgtgtttgatattcatggtggagggaaagatttgata 408 ||||||||||| |||||||| |||||||||||||| |||||||||||||||||| ||||| Sbjct: 1143 atgagtgctcattatttaggacatgtgtttgatatccatggtggagggaaagatctgata 1202 Query: 409 tttcctcatcatgagaatgagcttgcacaaagccgggcggcttatccagaaagtgaggtc 468 |||||||||||||||||||||||||| || |||||||| ||||||||||||||||||||| Sbjct: 1203 tttcctcatcatgagaatgagcttgctcagagccgggcagcttatccagaaagtgaggtc 1262 Query: 469 aaatgctggatgcataatggctttattaacatcgatgaccaaaagatgtcaaaatcagtt 528 ||||| |||||||| ||||| ||| |||||| ||||| || || |||||||| |||| | Sbjct: 1263 aaatgttggatgcacaatgggtttgttaacaaggatgatcagaaaatgtcaaagtcagat 1322 Query: 529 aataacttcttcacgatcagagatattataactctgtatcatcctttggcgctgagattt 588 || || |||||||| ||| |||||||||| |||||| ||||| |||| |||| ||| Sbjct: 1323 aaaaatttcttcacaatccgagatattattgatctgtaccatcccatggctttgaggttt 1382 Query: 589 ttcctgatgcgcacacatta 608 |||||||||||||||||||| Sbjct: 1383 ttcctgatgcgcacacatta 1402
>gb|AY104190.1| Zea mays PCO098162 mRNA sequence Length = 2120 Score = 432 bits (218), Expect = e-118 Identities = 497/590 (84%) Strand = Plus / Plus Query: 20 ctgagcttcagtgcctgcctcctactcacgagccacgcgtgacagagcatattgaaaata 79 ||||||| |||||| |||||||||| ||||||||| || ||||| || ||||| ||| Sbjct: 588 ctgagctccagtgcttgcctcctacctgcgagccacgggtaacagaacacattgagcata 647 Query: 80 tcataaagttaatcacagagataatcaagaatggcaaggcctatgttgtagacggtgatg 139 | |||||||| || ||| ||||||| |||||||||| ||||||| | | || || |||| Sbjct: 648 ttataaagttgataacacagataatggagaatggcaaagcctatgctattgaaggagatg 707 Query: 140 tttacttctccgtcgacaattttcctgaatatctgagcttatcgggcaggatcttagatc 199 ||||||| || || || | ||||||||||||||| || ||||| || || | || |||| Sbjct: 708 tttacttttcagttgaaagttttcctgaatatctcagtttatctggaagaaaatttgatc 767 Query: 200 acaatcgtgctggttcacgggttgctgtcgatacaagaaagcggaaccctgcagactttg 259 | |||| || ||| ||||||||||| | |||||||||||||| || ||||||||||| | Sbjct: 768 aaaatcaggcaggtgcacgggttgcttttgatacaagaaagcgtaatcctgcagacttcg 827 Query: 260 cgttatggaaggctgctaaggaaggtgagccttcttgggagagcccttggggtaacggaa 319 | | ||||| ||||| ||||| ||||| |||| |||||| ||||||||||| |||| Sbjct: 828 cactctggaaagctgcaaaggagggtgaacctttttgggatagcccttggggccgtggaa 887 Query: 320 gaccaggatggcatattgaatgcagtgcaatgagtgctcactatttagggcatgtgtttg 379 ||||||| ||||||||||||||||| ||||||||||||||||||||||| ||||| || | Sbjct: 888 gaccaggttggcatattgaatgcagcgcaatgagtgctcactatttaggacatgtattcg 947 Query: 380 atattcatggtggagggaaagatttgatatttcctcatcatgagaatgagcttgcacaaa 439 ||||||||||||| |||||||||||||| ||||||||||||||||||||||||||||||| Sbjct: 948 atattcatggtggggggaaagatttgatttttcctcatcatgagaatgagcttgcacaaa 1007 Query: 440 gccgggcggcttatccagaaagtgaggtcaaatgctggatgcataatggctttattaaca 499 |||| || |||||||| || || |||||||||||||||||||| ||||||||| |||||| Sbjct: 1008 gccgcgcagcttatcctgatagcgaggtcaaatgctggatgcacaatggctttgttaaca 1067 Query: 500 tcgatgaccaaaagatgtcaaaatcagttaataacttcttcacgatcagagatattataa 559 ||||| |||| ||| ||||||||| ||||||||| |||||||| |||||||| || Sbjct: 1068 aggatgataaaaaaatggcaaaatcagataataactttttcacgattagagatatcattg 1127 Query: 560 ctctgtatcatcctttggcgctgagatttttcctgatgcgcacacattat 609 |||| || ||||| |||| | ||||||||| ||||||||||||||||| Sbjct: 1128 ctctttaccatccaatggctttaagatttttcttgatgcgcacacattat 1177
>ref|NM_196892.1| Oryza sativa (japonica cultivar-group) putative cysteinyl-tRNA synthetase (OSJNBa0071K18.27), mRNA Length = 1563 Score = 307 bits (155), Expect = 2e-80 Identities = 329/387 (85%) Strand = Plus / Plus Query: 223 gctgtcgatacaagaaagcggaaccctgcagactttgcgttatggaaggctgctaaggaa 282 ||||| ||| |||||||||| || |||||||||||||| ||||||||| |||||||||| Sbjct: 565 gctgttgatgcaagaaagcgaaatcctgcagactttgcattatggaagtctgctaaggag 624 Query: 283 ggtgagccttcttgggagagcccttggggtaacggaagaccaggatggcatattgaatgc 342 |||||||| ||||||||||||||||||||| ||||| ||||||||||||||||| ||| Sbjct: 625 ggtgagccatcttgggagagcccttggggtcgtggaaggccaggatggcatattgagtgc 684 Query: 343 agtgcaatgagtgctcactatttagggcatgtgtttgatattcatggtggagggaaagat 402 ||||| ||||| ||||| ||||| || || | |||||||||||||||||||| |||||| Sbjct: 685 agtgcgatgagcgctcattatttgggtaatatttttgatattcatggtggaggaaaagat 744 Query: 403 ttgatatttcctcatcatgagaatgagcttgcacaaagccgggcggcttatccagaaagt 462 ||||| ||||||||||||||||||||||| |||||||||| || |||||||| || ||| Sbjct: 745 ttgatctttcctcatcatgagaatgagctcgcacaaagccaagcagcttatcctgagagt 804 Query: 463 gaggtcaaatgctggatgcataatggctttattaacatcgatgaccaaaagatgtcaaaa 522 ||||| ||||||||||||||||| || ||| | |||| |||| ||| || ||| | || Sbjct: 805 gaggtaaaatgctggatgcataacgggtttgtcaacaaagatggccagaaaatggctaag 864 Query: 523 tcagttaataacttcttcacgatcagagatattataactctgtatcatcctttggcgctg 582 ||| ||| || |||||||| |||||||||||||| ||||||| ||||| |||| | Sbjct: 865 gcagataagaatttcttcaccatcagagatattatttctctgtaccatcccatggcttta 924 Query: 583 agatttttcctgatgcgcacacattat 609 ||||| || |||||||| ||||||||| Sbjct: 925 agattatttctgatgcgtacacattat 951 Score = 44.1 bits (22), Expect = 0.53 Identities = 43/50 (86%) Strand = Plus / Plus Query: 25 cttcagtgcctgcctcctactcacgagccacgcgtgacagagcatattga 74 ||||||||||| || |||||||| |||||||| || ||| |||| ||||| Sbjct: 367 cttcagtgccttccccctactcatgagccacgtgtaacaaagcacattga 416
>gb|DP000009.1| Oryza sativa (japonica cultivar-group) chromosome 3 Length = 36102668 Score = 301 bits (152), Expect = 1e-78 Identities = 251/284 (88%) Strand = Plus / Minus Query: 269 aggctgctaaggaaggtgagccttcttgggagagcccttggggtaacggaagaccaggat 328 |||||||||||||||| || |||| ||||| ||||| ||||| || |||||||||| Sbjct: 2380137 aggctgctaaggaaggcgaacctttctgggatagcccatggggccgtggtagaccaggat 2380078 Query: 329 ggcatattgaatgcagtgcaatgagtgctcactatttagggcatgtgtttgatattcatg 388 ||||||||||||||||||||||||||||||| |||||||| |||||||||||||| |||| Sbjct: 2380077 ggcatattgaatgcagtgcaatgagtgctcattatttaggacatgtgtttgatatccatg 2380018 Query: 389 gtggagggaaagatttgatatttcctcatcatgagaatgagcttgcacaaagccgggcgg 448 |||||||||||||| ||||||||||||||||||||||||||||||| || |||||||| | Sbjct: 2380017 gtggagggaaagatctgatatttcctcatcatgagaatgagcttgctcagagccgggcag 2379958 Query: 449 cttatccagaaagtgaggtcaaatgctggatgcataatggctttattaacatcgatgacc 508 ||||||||||||||||||||||||| |||||||| ||||| ||| |||||| ||||| | Sbjct: 2379957 cttatccagaaagtgaggtcaaatgttggatgcacaatgggtttgttaacaaggatgatc 2379898 Query: 509 aaaagatgtcaaaatcagttaataacttcttcacgatcagagat 552 | || |||||||| |||| ||| || |||||||| ||| ||||| Sbjct: 2379897 agaaaatgtcaaagtcagataaaaatttcttcacaatccgagat 2379854 Score = 131 bits (66), Expect = 3e-27 Identities = 147/174 (84%) Strand = Plus / Minus Query: 98 agataatcaagaatggcaaggcctatgttgtagacggtgatgtttacttctccgtcgaca 157 ||||||| ||||||| || ||||||| | | || || ||||||||||| || || || | Sbjct: 2380388 agataatggagaatgggaaagcctatgctatggaaggagatgtttacttttcagttgata 2380329 Query: 158 attttcctgaatatctgagcttatcgggcaggatcttagatcacaatcgtgctggttcac 217 ||| ||||| ||||| || ||||| || |||| |||||||| |||| ||||||||| | Sbjct: 2380328 ctttccctgagtatctcagtttatctggaaggaagttagatcataatcttgctggttcgc 2380269 Query: 218 gggttgctgtcgatacaagaaagcggaaccctgcagactttgcgttatggaagg 271 |||||||||||||||||||||||||||||||||||||||||||| | ||||||| Sbjct: 2380268 gggttgctgtcgatacaagaaagcggaaccctgcagactttgcgctgtggaagg 2380215 Score = 48.1 bits (24), Expect = 0.034 Identities = 27/28 (96%) Strand = Plus / Minus Query: 581 tgagatttttcctgatgcgcacacatta 608 |||| ||||||||||||||||||||||| Sbjct: 2379735 tgaggtttttcctgatgcgcacacatta 2379708
>gb|AC122149.2| Oryza sativa (japonica cultivar-group) chromosome 3 clone OSJNBa0083D24, complete sequence Length = 150503 Score = 301 bits (152), Expect = 1e-78 Identities = 251/284 (88%) Strand = Plus / Minus Query: 269 aggctgctaaggaaggtgagccttcttgggagagcccttggggtaacggaagaccaggat 328 |||||||||||||||| || |||| ||||| ||||| ||||| || |||||||||| Sbjct: 96979 aggctgctaaggaaggcgaacctttctgggatagcccatggggccgtggtagaccaggat 96920 Query: 329 ggcatattgaatgcagtgcaatgagtgctcactatttagggcatgtgtttgatattcatg 388 ||||||||||||||||||||||||||||||| |||||||| |||||||||||||| |||| Sbjct: 96919 ggcatattgaatgcagtgcaatgagtgctcattatttaggacatgtgtttgatatccatg 96860 Query: 389 gtggagggaaagatttgatatttcctcatcatgagaatgagcttgcacaaagccgggcgg 448 |||||||||||||| ||||||||||||||||||||||||||||||| || |||||||| | Sbjct: 96859 gtggagggaaagatctgatatttcctcatcatgagaatgagcttgctcagagccgggcag 96800 Query: 449 cttatccagaaagtgaggtcaaatgctggatgcataatggctttattaacatcgatgacc 508 ||||||||||||||||||||||||| |||||||| ||||| ||| |||||| ||||| | Sbjct: 96799 cttatccagaaagtgaggtcaaatgttggatgcacaatgggtttgttaacaaggatgatc 96740 Query: 509 aaaagatgtcaaaatcagttaataacttcttcacgatcagagat 552 | || |||||||| |||| ||| || |||||||| ||| ||||| Sbjct: 96739 agaaaatgtcaaagtcagataaaaatttcttcacaatccgagat 96696 Score = 131 bits (66), Expect = 3e-27 Identities = 147/174 (84%) Strand = Plus / Minus Query: 98 agataatcaagaatggcaaggcctatgttgtagacggtgatgtttacttctccgtcgaca 157 ||||||| ||||||| || ||||||| | | || || ||||||||||| || || || | Sbjct: 97230 agataatggagaatgggaaagcctatgctatggaaggagatgtttacttttcagttgata 97171 Query: 158 attttcctgaatatctgagcttatcgggcaggatcttagatcacaatcgtgctggttcac 217 ||| ||||| ||||| || ||||| || |||| |||||||| |||| ||||||||| | Sbjct: 97170 ctttccctgagtatctcagtttatctggaaggaagttagatcataatcttgctggttcgc 97111 Query: 218 gggttgctgtcgatacaagaaagcggaaccctgcagactttgcgttatggaagg 271 |||||||||||||||||||||||||||||||||||||||||||| | ||||||| Sbjct: 97110 gggttgctgtcgatacaagaaagcggaaccctgcagactttgcgctgtggaagg 97057 Score = 48.1 bits (24), Expect = 0.034 Identities = 27/28 (96%) Strand = Plus / Minus Query: 581 tgagatttttcctgatgcgcacacatta 608 |||| ||||||||||||||||||||||| Sbjct: 96577 tgaggtttttcctgatgcgcacacatta 96550
>dbj|AP008209.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 3, complete sequence Length = 36192742 Score = 301 bits (152), Expect = 1e-78 Identities = 251/284 (88%) Strand = Plus / Minus Query: 269 aggctgctaaggaaggtgagccttcttgggagagcccttggggtaacggaagaccaggat 328 |||||||||||||||| || |||| ||||| ||||| ||||| || |||||||||| Sbjct: 2380247 aggctgctaaggaaggcgaacctttctgggatagcccatggggccgtggtagaccaggat 2380188 Query: 329 ggcatattgaatgcagtgcaatgagtgctcactatttagggcatgtgtttgatattcatg 388 ||||||||||||||||||||||||||||||| |||||||| |||||||||||||| |||| Sbjct: 2380187 ggcatattgaatgcagtgcaatgagtgctcattatttaggacatgtgtttgatatccatg 2380128 Query: 389 gtggagggaaagatttgatatttcctcatcatgagaatgagcttgcacaaagccgggcgg 448 |||||||||||||| ||||||||||||||||||||||||||||||| || |||||||| | Sbjct: 2380127 gtggagggaaagatctgatatttcctcatcatgagaatgagcttgctcagagccgggcag 2380068 Query: 449 cttatccagaaagtgaggtcaaatgctggatgcataatggctttattaacatcgatgacc 508 ||||||||||||||||||||||||| |||||||| ||||| ||| |||||| ||||| | Sbjct: 2380067 cttatccagaaagtgaggtcaaatgttggatgcacaatgggtttgttaacaaggatgatc 2380008 Query: 509 aaaagatgtcaaaatcagttaataacttcttcacgatcagagat 552 | || |||||||| |||| ||| || |||||||| ||| ||||| Sbjct: 2380007 agaaaatgtcaaagtcagataaaaatttcttcacaatccgagat 2379964 Score = 131 bits (66), Expect = 3e-27 Identities = 147/174 (84%) Strand = Plus / Minus Query: 98 agataatcaagaatggcaaggcctatgttgtagacggtgatgtttacttctccgtcgaca 157 ||||||| ||||||| || ||||||| | | || || ||||||||||| || || || | Sbjct: 2380498 agataatggagaatgggaaagcctatgctatggaaggagatgtttacttttcagttgata 2380439 Query: 158 attttcctgaatatctgagcttatcgggcaggatcttagatcacaatcgtgctggttcac 217 ||| ||||| ||||| || ||||| || |||| |||||||| |||| ||||||||| | Sbjct: 2380438 ctttccctgagtatctcagtttatctggaaggaagttagatcataatcttgctggttcgc 2380379 Query: 218 gggttgctgtcgatacaagaaagcggaaccctgcagactttgcgttatggaagg 271 |||||||||||||||||||||||||||||||||||||||||||| | ||||||| Sbjct: 2380378 gggttgctgtcgatacaagaaagcggaaccctgcagactttgcgctgtggaagg 2380325 Score = 48.1 bits (24), Expect = 0.034 Identities = 27/28 (96%) Strand = Plus / Minus Query: 581 tgagatttttcctgatgcgcacacatta 608 |||| ||||||||||||||||||||||| Sbjct: 2379845 tgaggtttttcctgatgcgcacacatta 2379818
>gb|AC027038.12| Oryza sativa chromosome 10 BAC OSJNBa0071K18 genomic sequence, complete sequence Length = 149758 Score = 234 bits (118), Expect = 3e-58 Identities = 190/214 (88%) Strand = Plus / Minus Query: 272 ctgctaaggaaggtgagccttcttgggagagcccttggggtaacggaagaccaggatggc 331 |||||||||| |||||||| ||||||||||||||||||||| ||||| |||||||||| Sbjct: 109200 ctgctaaggagggtgagccatcttgggagagcccttggggtcgtggaaggccaggatggc 109141 Query: 332 atattgaatgcagtgcaatgagtgctcactatttagggcatgtgtttgatattcatggtg 391 ||||||| |||||||| ||||| ||||| ||||| || || | |||||||||||||||| Sbjct: 109140 atattgagtgcagtgcgatgagcgctcattatttgggtaatatttttgatattcatggtg 109081 Query: 392 gagggaaagatttgatatttcctcatcatgagaatgagcttgcacaaagccgggcggctt 451 |||| ||||||||||| ||||||||||||||||||||||| |||||||||| || |||| Sbjct: 109080 gaggaaaagatttgatctttcctcatcatgagaatgagctcgcacaaagccaagcagctt 109021 Query: 452 atccagaaagtgaggtcaaatgctggatgcataa 485 |||| || |||||||| ||||||||||||||||| Sbjct: 109020 atcctgagagtgaggtaaaatgctggatgcataa 108987 Score = 58.0 bits (29), Expect = 4e-05 Identities = 44/49 (89%) Strand = Plus / Minus Query: 223 gctgtcgatacaagaaagcggaaccctgcagactttgcgttatggaagg 271 ||||| ||| |||||||||| || |||||||||||||| |||||||||| Sbjct: 109333 gctgttgatgcaagaaagcgaaatcctgcagactttgcattatggaagg 109285 Score = 44.1 bits (22), Expect = 0.53 Identities = 43/50 (86%) Strand = Plus / Minus Query: 25 cttcagtgcctgcctcctactcacgagccacgcgtgacagagcatattga 74 ||||||||||| || |||||||| |||||||| || ||| |||| ||||| Sbjct: 110049 cttcagtgccttccccctactcatgagccacgtgtaacaaagcacattga 110000
>dbj|AP008216.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 10, complete sequence Length = 22685906 Score = 234 bits (118), Expect = 3e-58 Identities = 190/214 (88%) Strand = Plus / Plus Query: 272 ctgctaaggaaggtgagccttcttgggagagcccttggggtaacggaagaccaggatggc 331 |||||||||| |||||||| ||||||||||||||||||||| ||||| |||||||||| Sbjct: 16551042 ctgctaaggagggtgagccatcttgggagagcccttggggtcgtggaaggccaggatggc 16551101 Query: 332 atattgaatgcagtgcaatgagtgctcactatttagggcatgtgtttgatattcatggtg 391 ||||||| |||||||| ||||| ||||| ||||| || || | |||||||||||||||| Sbjct: 16551102 atattgagtgcagtgcgatgagcgctcattatttgggtaatatttttgatattcatggtg 16551161 Query: 392 gagggaaagatttgatatttcctcatcatgagaatgagcttgcacaaagccgggcggctt 451 |||| ||||||||||| ||||||||||||||||||||||| |||||||||| || |||| Sbjct: 16551162 gaggaaaagatttgatctttcctcatcatgagaatgagctcgcacaaagccaagcagctt 16551221 Query: 452 atccagaaagtgaggtcaaatgctggatgcataa 485 |||| || |||||||| ||||||||||||||||| Sbjct: 16551222 atcctgagagtgaggtaaaatgctggatgcataa 16551255 Score = 58.0 bits (29), Expect = 4e-05 Identities = 44/49 (89%) Strand = Plus / Plus Query: 223 gctgtcgatacaagaaagcggaaccctgcagactttgcgttatggaagg 271 ||||| ||| |||||||||| || |||||||||||||| |||||||||| Sbjct: 16550909 gctgttgatgcaagaaagcgaaatcctgcagactttgcattatggaagg 16550957 Score = 44.1 bits (22), Expect = 0.53 Identities = 43/50 (86%) Strand = Plus / Plus Query: 25 cttcagtgcctgcctcctactcacgagccacgcgtgacagagcatattga 74 ||||||||||| || |||||||| |||||||| || ||| |||| ||||| Sbjct: 16550193 cttcagtgccttccccctactcatgagccacgtgtaacaaagcacattga 16550242
>gb|AE016959.3| Oryza sativa (japonica cultivar-group) chromosome 10, complete sequence Length = 22698374 Score = 234 bits (118), Expect = 3e-58 Identities = 190/214 (88%) Strand = Plus / Plus Query: 272 ctgctaaggaaggtgagccttcttgggagagcccttggggtaacggaagaccaggatggc 331 |||||||||| |||||||| ||||||||||||||||||||| ||||| |||||||||| Sbjct: 16559283 ctgctaaggagggtgagccatcttgggagagcccttggggtcgtggaaggccaggatggc 16559342 Query: 332 atattgaatgcagtgcaatgagtgctcactatttagggcatgtgtttgatattcatggtg 391 ||||||| |||||||| ||||| ||||| ||||| || || | |||||||||||||||| Sbjct: 16559343 atattgagtgcagtgcgatgagcgctcattatttgggtaatatttttgatattcatggtg 16559402 Query: 392 gagggaaagatttgatatttcctcatcatgagaatgagcttgcacaaagccgggcggctt 451 |||| ||||||||||| ||||||||||||||||||||||| |||||||||| || |||| Sbjct: 16559403 gaggaaaagatttgatctttcctcatcatgagaatgagctcgcacaaagccaagcagctt 16559462 Query: 452 atccagaaagtgaggtcaaatgctggatgcataa 485 |||| || |||||||| ||||||||||||||||| Sbjct: 16559463 atcctgagagtgaggtaaaatgctggatgcataa 16559496 Score = 58.0 bits (29), Expect = 4e-05 Identities = 44/49 (89%) Strand = Plus / Plus Query: 223 gctgtcgatacaagaaagcggaaccctgcagactttgcgttatggaagg 271 ||||| ||| |||||||||| || |||||||||||||| |||||||||| Sbjct: 16559150 gctgttgatgcaagaaagcgaaatcctgcagactttgcattatggaagg 16559198 Score = 44.1 bits (22), Expect = 0.53 Identities = 43/50 (86%) Strand = Plus / Plus Query: 25 cttcagtgcctgcctcctactcacgagccacgcgtgacagagcatattga 74 ||||||||||| || |||||||| |||||||| || ||| |||| ||||| Sbjct: 16558434 cttcagtgccttccccctactcatgagccacgtgtaacaaagcacattga 16558483
>ref|NM_123244.2| Arabidopsis thaliana ATP binding / cysteine-tRNA ligase AT5G38830 mRNA, complete cds Length = 1594 Score = 95.6 bits (48), Expect = 2e-16 Identities = 114/136 (83%) Strand = Plus / Plus Query: 220 gttgctgtcgatacaagaaagcggaaccctgcagactttgcgttatggaaggctgctaag 279 |||||||| ||| | |||||||| |||||||| || ||||| ||||||||||| || ||| Sbjct: 578 gttgctgttgattcgagaaagcgtaaccctgctgattttgcattatggaaggcggcaaag 637 Query: 280 gaaggtgagccttcttgggagagcccttggggtaacggaagaccaggatggcatattgaa 339 | |||||| ||||||||||||||||||| ||||||||||||||||| || || Sbjct: 638 cctgatgagccaagttgggagagcccttggggtccaggaagaccaggatggcacatcgag 697 Query: 340 tgcagtgcaatgagtg 355 |||||||||||||||| Sbjct: 698 tgcagtgcaatgagtg 713
>emb|AL163763.1|ATF18O21 Arabidopsis thaliana DNA chromosome 3, BAC clone F18O21 Length = 99492 Score = 83.8 bits (42), Expect = 6e-13 Identities = 60/66 (90%) Strand = Plus / Plus Query: 294 ttgggagagcccttggggtaacggaagaccaggatggcatattgaatgcagtgcaatgag 353 ||||||||||||||||||| | ||||||||||||||||| || || |||||||| ||||| Sbjct: 84161 ttgggagagcccttggggtcatggaagaccaggatggcacatcgagtgcagtgccatgag 84220 Query: 354 tgctca 359 |||||| Sbjct: 84221 tgctca 84226
>gb|BT013454.1| Lycopersicon esculentum clone 132110F, mRNA sequence Length = 2204 Score = 81.8 bits (41), Expect = 2e-12 Identities = 62/69 (89%) Strand = Plus / Plus Query: 294 ttgggagagcccttggggtaacggaagaccaggatggcatattgaatgcagtgcaatgag 353 |||||||||||| |||||| ||||||||||| |||||||| ||||||||||||||||| Sbjct: 697 ttgggagagcccctggggtcctggaagaccaggttggcatatagaatgcagtgcaatgag 756 Query: 354 tgctcacta 362 ||| ||||| Sbjct: 757 tgcgcacta 765
>emb|BX829903.1|CNS0A18Y Arabidopsis thaliana Full-length cDNA Complete sequence from clone GSLTFB45ZB11 of Flowers and buds of strain col-0 of Arabidopsis thaliana (thale cress) Length = 1476 Score = 81.8 bits (41), Expect = 2e-12 Identities = 114/137 (83%), Gaps = 1/137 (0%) Strand = Plus / Plus Query: 220 gttgctgtcgatacaagaaagcggaaccctgcagactttgcgttatggaaggctgctaag 279 |||||||| ||| | |||||||| |||||||| || ||||| ||||||||||| || ||| Sbjct: 582 gttgctgttgattcgagaaagcgtaaccctgctgattttgcattatggaaggcggcaaag 641 Query: 280 gaaggt-gagccttcttgggagagcccttggggtaacggaagaccaggatggcatattga 338 | | ||||| ||||||||||||||||||| ||||||||||||||||| || || Sbjct: 642 cctgattgagccaagttgggagagcccttggggtccaggaagaccaggatggcacatcga 701 Query: 339 atgcagtgcaatgagtg 355 |||||||||||||||| Sbjct: 702 gtgcagtgcaatgagtg 718
>dbj|AB009048.1| Arabidopsis thaliana genomic DNA, chromosome 5, TAC clone:K15E6 Length = 71736 Score = 75.8 bits (38), Expect = 2e-10 Identities = 56/62 (90%) Strand = Plus / Minus Query: 294 ttgggagagcccttggggtaacggaagaccaggatggcatattgaatgcagtgcaatgag 353 ||||||||||||||||||| ||||||||||||||||| || || |||||||||||||| Sbjct: 9550 ttgggagagcccttggggtccaggaagaccaggatggcacatcgagtgcagtgcaatgag 9491 Query: 354 tg 355 || Sbjct: 9490 tg 9489
>ref|XM_757991.1| Theileria parva strain Muguga chromosome 3 cysteinyl-tRNA synthetase (TP03_0065) partial mRNA Length = 2011 Score = 71.9 bits (36), Expect = 2e-09 Identities = 54/60 (90%) Strand = Plus / Plus Query: 292 tcttgggagagcccttggggtaacggaagaccaggatggcatattgaatgcagtgcaatg 351 |||||||| || |||||||| || || ||||||||||||||||||||||| ||||||||| Sbjct: 839 tcttgggatagtccttggggaaaggggagaccaggatggcatattgaatgtagtgcaatg 898
>dbj|AK069699.1| Oryza sativa (japonica cultivar-group) cDNA clone:J023027G01, full insert sequence Length = 2196 Score = 71.9 bits (36), Expect = 2e-09 Identities = 78/92 (84%) Strand = Plus / Plus Query: 265 tggaaggctgctaaggaaggtgagccttcttgggagagcccttggggtaacggaagacca 324 ||||||||||| || || || ||||| |||||||| ||||||||||| ||||| ||| Sbjct: 830 tggaaggctgcaaaagatggggagccatcttgggatagcccttggggccctggaaggcca 889 Query: 325 ggatggcatattgaatgcagtgcaatgagtgc 356 |||||||| || ||||||||||| |||||||| Sbjct: 890 ggatggcacatagaatgcagtgctatgagtgc 921
>emb|BX897700.1| Bartonella quintana str. Toulouse, complete genome Length = 1581384 Score = 67.9 bits (34), Expect = 4e-08 Identities = 61/70 (87%) Strand = Plus / Plus Query: 371 atgtgtttgatattcatggtggagggaaagatttgatatttcctcatcatgagaatgagc 430 |||| |||||||| |||||||| || | |||||||| |||||||||||||| |||||| Sbjct: 539451 atgtttttgatatccatggtggtggtattgatttgatttttcctcatcatgaaaatgaga 539510 Query: 431 ttgcacaaag 440 |||||||||| Sbjct: 539511 ttgcacaaag 539520
>ref|NM_115488.1| Arabidopsis thaliana ATP binding / cysteine-tRNA ligase AT3G56300 mRNA, complete cds Length = 1470 Score = 65.9 bits (33), Expect = 1e-07 Identities = 93/113 (82%) Strand = Plus / Plus Query: 220 gttgctgtcgatacaagaaagcggaaccctgcagactttgcgttatggaaggctgctaag 279 |||||||| || |||| ||||| || ||||| |||||||| ||| |||||||||| || Sbjct: 517 gttgctgttgactcaaggaagcgtaatcctgctgactttgcattacggaaggctgcaaaa 576 Query: 280 gaaggtgagccttcttgggagagcccttggggtaacggaagaccaggatggca 332 ||||| || ||||||||||||||||||| | ||||||||||||||||| Sbjct: 577 tctggtgaaccaagttgggagagcccttggggtcatggaagaccaggatggca 629
>gb|AC137592.2| Oryza sativa (Japonica cultiva-group) chromosome 9 BAC clone OSJNBa0035B22, complete sequence Length = 155788 Score = 63.9 bits (32), Expect = 6e-07 Identities = 74/88 (84%) Strand = Plus / Minus Query: 269 aggctgctaaggaaggtgagccttcttgggagagcccttggggtaacggaagaccaggat 328 ||||||| || || || ||||| |||||||| ||||||||||| ||||| ||||||| Sbjct: 21508 aggctgcaaaagatggggagccatcttgggatagcccttggggccctggaaggccaggat 21449 Query: 329 ggcatattgaatgcagtgcaatgagtgc 356 |||| || ||||||||||| |||||||| Sbjct: 21448 ggcacatagaatgcagtgctatgagtgc 21421
>ref|XM_662988.1| Cryptosporidium hominis TU502 cysteinyl-tRNA-synthetase (Chro.60125) partial mRNA Length = 1278 Score = 63.9 bits (32), Expect = 6e-07 Identities = 50/56 (89%) Strand = Plus / Plus Query: 286 gagccttcttgggagagcccttggggtaacggaagaccaggatggcatattgaatg 341 ||||||| |||||| || |||||||| || || ||||||||||||||||||||||| Sbjct: 718 gagccttgttgggatagtccttgggggaaaggtagaccaggatggcatattgaatg 773
>emb|BX538350.1| Cryptosporidium parvum chromosome 6, complete sequence; segment 1/4 Length = 287050 Score = 63.9 bits (32), Expect = 6e-07 Identities = 50/56 (89%) Strand = Plus / Minus Query: 286 gagccttcttgggagagcccttggggtaacggaagaccaggatggcatattgaatg 341 ||||||| |||||| || |||||||| || || ||||||||||||||||||||||| Sbjct: 107463 gagccttgttgggatagtccttggggaaaaggtagaccaggatggcatattgaatg 107408 Score = 44.1 bits (22), Expect = 0.53 Identities = 34/38 (89%) Strand = Plus / Minus Query: 403 ttgatatttcctcatcatgagaatgagcttgcacaaag 440 |||| ||| ||||||||||| ||||||||||| ||||| Sbjct: 107346 ttgagattccctcatcatgataatgagcttgctcaaag 107309
>ref|XM_627469.1| Cryptosporidium parvum Iowa II cysteinyl-tRNA synthetase (cgd6_960), partial mRNA Length = 1746 Score = 63.9 bits (32), Expect = 6e-07 Identities = 50/56 (89%) Strand = Plus / Plus Query: 286 gagccttcttgggagagcccttggggtaacggaagaccaggatggcatattgaatg 341 ||||||| |||||| || |||||||| || || ||||||||||||||||||||||| Sbjct: 718 gagccttgttgggatagtccttggggaaaaggtagaccaggatggcatattgaatg 773 Score = 44.1 bits (22), Expect = 0.53 Identities = 34/38 (89%) Strand = Plus / Plus Query: 403 ttgatatttcctcatcatgagaatgagcttgcacaaag 440 |||| ||| ||||||||||| ||||||||||| ||||| Sbjct: 835 ttgagattccctcatcatgataatgagcttgctcaaag 872
>dbj|AP008215.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 9, complete sequence Length = 22696651 Score = 63.9 bits (32), Expect = 6e-07 Identities = 74/88 (84%) Strand = Plus / Minus Query: 269 aggctgctaaggaaggtgagccttcttgggagagcccttggggtaacggaagaccaggat 328 ||||||| || || || ||||| |||||||| ||||||||||| ||||| ||||||| Sbjct: 21816074 aggctgcaaaagatggggagccatcttgggatagcccttggggccctggaaggccaggat 21816015 Query: 329 ggcatattgaatgcagtgcaatgagtgc 356 |||| || ||||||||||| |||||||| Sbjct: 21816014 ggcacatagaatgcagtgctatgagtgc 21815987
>emb|CT009553.4| M.truncatula DNA sequence from clone MTH2-115C19 on chromosome 3, complete sequence Length = 125987 Score = 61.9 bits (31), Expect = 2e-06 Identities = 55/63 (87%) Strand = Plus / Plus Query: 294 ttgggagagcccttggggtaacggaagaccaggatggcatattgaatgcagtgcaatgag 353 ||||||||| || |||||| |||||||| || |||||||||||||||||||| ||||| Sbjct: 4001 ttgggagagtccctggggtcctggaagacctgggtggcatattgaatgcagtgctatgag 4060 Query: 354 tgc 356 ||| Sbjct: 4061 tgc 4063
>gb|AE001437.1| Clostridium acetobutylicum ATCC 824, complete genome Length = 3940880 Score = 61.9 bits (31), Expect = 2e-06 Identities = 46/51 (90%) Strand = Plus / Minus Query: 292 tcttgggagagcccttggggtaacggaagaccaggatggcatattgaatgc 342 ||||||||||| || ||||| || |||||||||||||||||||| |||||| Sbjct: 3313660 tcttgggagagtccatgggggaaaggaagaccaggatggcatatagaatgc 3313610
>emb|CR925678.1| Ehrlichia ruminantium str. Welgevonden, complete genome Length = 1512977 Score = 60.0 bits (30), Expect = 9e-06 Identities = 33/34 (97%) Strand = Plus / Plus Query: 408 atttcctcatcatgagaatgagcttgcacaaagc 441 |||||||||||||||||||||||| ||||||||| Sbjct: 545138 atttcctcatcatgagaatgagctagcacaaagc 545171
>emb|CR925677.1| Ehrlichia ruminantium str. Gardel, complete genome Length = 1499920 Score = 60.0 bits (30), Expect = 9e-06 Identities = 33/34 (97%) Strand = Plus / Plus Query: 408 atttcctcatcatgagaatgagcttgcacaaagc 441 |||||||||||||||||||||||| ||||||||| Sbjct: 541686 atttcctcatcatgagaatgagctagcacaaagc 541719
>emb|CR767821.1| Ehrlichia ruminantium strain Welgevonden, complete genome Length = 1516355 Score = 60.0 bits (30), Expect = 9e-06 Identities = 33/34 (97%) Strand = Plus / Plus Query: 408 atttcctcatcatgagaatgagcttgcacaaagc 441 |||||||||||||||||||||||| ||||||||| Sbjct: 565279 atttcctcatcatgagaatgagctagcacaaagc 565312
>gb|CP000102.1| Methanosphaera stadtmanae DSM 3091, complete genome Length = 1767403 Score = 58.0 bits (29), Expect = 4e-05 Identities = 32/33 (96%) Strand = Plus / Plus Query: 307 tggggtaacggaagaccaggatggcatattgaa 339 |||||||| |||||||||||||||||||||||| Sbjct: 138985 tggggtaatggaagaccaggatggcatattgaa 139017
>gb|CP000025.1| Campylobacter jejuni RM1221, complete genome Length = 1777831 Score = 56.0 bits (28), Expect = 1e-04 Identities = 46/52 (88%) Strand = Plus / Plus Query: 377 ttgatattcatggtggagggaaagatttgatatttcctcatcatgagaatga 428 ||||||| |||| |||||||| ||||||| | |||||||||||||| ||||| Sbjct: 832343 ttgatatacatgctggagggatagatttgctttttcctcatcatgaaaatga 832394
>gb|AF393466.1| Uncultured crenarchaeote 74A4 partial genomic sequence Length = 43902 Score = 56.0 bits (28), Expect = 1e-04 Identities = 43/48 (89%) Strand = Plus / Plus Query: 295 tgggagagcccttggggtaacggaagaccaggatggcatattgaatgc 342 |||||||| || ||||| || |||||||||||||||||||| |||||| Sbjct: 1534 tgggagagtccatgggggaaaggaagaccaggatggcatatcgaatgc 1581
>ref|XM_949687.1| Theileria annulata strain Ankara cysteinyl-tRNA synthetase (TA03175) partial mRNA Length = 2085 Score = 56.0 bits (28), Expect = 1e-04 Identities = 52/60 (86%) Strand = Plus / Plus Query: 292 tcttgggagagcccttggggtaacggaagaccaggatggcatattgaatgcagtgcaatg 351 |||||||| || |||||||| | || |||||||||||||||||||| || ||||||||| Sbjct: 808 tcttgggaaagtccttggggaagagggagaccaggatggcatattgagtgtagtgcaatg 867
>emb|AL139076.2|CJ11168X3 Campylobacter jejuni subsp. jejuni NCTC 11168 complete genome; segment 3/6 Length = 317511 Score = 56.0 bits (28), Expect = 1e-04 Identities = 46/52 (88%) Strand = Plus / Plus Query: 377 ttgatattcatggtggagggaaagatttgatatttcctcatcatgagaatga 428 ||||||| |||| |||||||| ||||||| | |||||||||||||| ||||| Sbjct: 131230 ttgatatacatgctggagggatagatttgctttttcctcatcatgaaaatga 131281
>gb|AE017321.1| Wolbachia endosymbiont strain TRS of Brugia malayi, complete genome Length = 1080084 Score = 56.0 bits (28), Expect = 1e-04 Identities = 55/64 (85%) Strand = Plus / Plus Query: 376 tttgatattcatggtggagggaaagatttgatatttcctcatcatgagaatgagcttgca 435 ||||||||||||||||| || | ||||||| |||||||||||| || ||||| ||||| Sbjct: 887120 tttgatattcatggtggtggtatagatttgcaatttcctcatcacgaaaatgaaattgca 887179 Query: 436 caaa 439 |||| Sbjct: 887180 caaa 887183
>ref|XM_717163.1| Candida albicans SC5314 cysteinyl-tRNA synthetase (CaO19_12397), mRNA Length = 2346 Score = 54.0 bits (27), Expect = 6e-04 Identities = 33/35 (94%) Strand = Plus / Plus Query: 307 tggggtaacggaagaccaggatggcatattgaatg 341 |||||||| || ||||||||||||||||||||||| Sbjct: 1087 tggggtaaaggtagaccaggatggcatattgaatg 1121
>ref|XM_717049.1| Candida albicans SC5314 cysteinyl-tRNA synthetase (CaO19_4931), mRNA Length = 2346 Score = 54.0 bits (27), Expect = 6e-04 Identities = 33/35 (94%) Strand = Plus / Plus Query: 307 tggggtaacggaagaccaggatggcatattgaatg 341 |||||||| || ||||||||||||||||||||||| Sbjct: 1087 tggggtaaaggtagaccaggatggcatattgaatg 1121
>ref|XM_448044.1| Candida glabrata CBS138, CAGL0J07744g partial mRNA Length = 2367 Score = 54.0 bits (27), Expect = 6e-04 Identities = 33/35 (94%) Strand = Plus / Plus Query: 304 ccttggggtaacggaagaccaggatggcatattga 338 ||||||||||| || |||||||||||||||||||| Sbjct: 1093 ccttggggtaaaggtagaccaggatggcatattga 1127
>emb|Z71523.1|SCYNL247W S.cerevisiae chromosome XIV reading frame ORF YNL247w Length = 2851 Score = 54.0 bits (27), Expect = 6e-04 Identities = 33/35 (94%) Strand = Plus / Plus Query: 307 tggggtaacggaagaccaggatggcatattgaatg 341 |||||||| || ||||||||||||||||||||||| Sbjct: 1338 tggggtaagggtagaccaggatggcatattgaatg 1372
>emb|X96722.1|SCCHXIVL S.cerevisiae DNA region from chromosome XIV, left arm Length = 33016 Score = 54.0 bits (27), Expect = 6e-04 Identities = 33/35 (94%) Strand = Plus / Plus Query: 307 tggggtaacggaagaccaggatggcatattgaatg 341 |||||||| || ||||||||||||||||||||||| Sbjct: 29069 tggggtaagggtagaccaggatggcatattgaatg 29103
>emb|CR380956.1| Candida glabrata strain CBS138 chromosome J complete sequence Length = 1192501 Score = 54.0 bits (27), Expect = 6e-04 Identities = 33/35 (94%) Strand = Plus / Minus Query: 304 ccttggggtaacggaagaccaggatggcatattga 338 ||||||||||| || |||||||||||||||||||| Sbjct: 753972 ccttggggtaaaggtagaccaggatggcatattga 753938
>dbj|BA000028.3| Oceanobacillus iheyensis HTE831 DNA, complete genome Length = 3630528 Score = 54.0 bits (27), Expect = 6e-04 Identities = 36/39 (92%) Strand = Plus / Plus Query: 304 ccttggggtaacggaagaccaggatggcatattgaatgc 342 ||||||||| | ||||||||||| ||||||||||||||| Sbjct: 120325 ccttggggtgaaggaagaccaggttggcatattgaatgc 120363
>emb|BX897699.1| Bartonella henselae strain Houston-1, complete genome Length = 1931047 Score = 52.0 bits (26), Expect = 0.002 Identities = 59/70 (84%) Strand = Plus / Plus Query: 371 atgtgtttgatattcatggtggagggaaagatttgatatttcctcatcatgagaatgagc 430 |||| |||||||| |||||||| || |||||||| |||||||||||||| |||||| Sbjct: 604499 atgtttttgatatccatggtggtggacttgatttgatttttcctcatcatgaaaatgaga 604558 Query: 431 ttgcacaaag 440 |||| ||||| Sbjct: 604559 ttgcccaaag 604568
>emb|BX572093.1| Prochlorococcus marinus MED4 complete genome; segment 4/5 Length = 348986 Score = 52.0 bits (26), Expect = 0.002 Identities = 35/38 (92%) Strand = Plus / Plus Query: 304 ccttggggtaacggaagaccaggatggcatattgaatg 341 |||||||| || || ||||||||||||||||||||||| Sbjct: 46949 ccttgggggaaaggtagaccaggatggcatattgaatg 46986
>dbj|AP006628.1| Onion yellows phytoplasma OY-M DNA, complete genome Length = 860631 Score = 52.0 bits (26), Expect = 0.002 Identities = 44/50 (88%) Strand = Plus / Plus Query: 379 gatattcatggtggagggaaagatttgatatttcctcatcatgagaatga 428 ||||||||||| ||||| | |||||| | ||||||||||||||| ||||| Sbjct: 166372 gatattcatggaggaggtacagatttaaaatttcctcatcatgaaaatga 166421
>gb|AE014831.1| Plasmodium falciparum 3D7 chromosome 10 section 3 of 7 of the complete sequence Length = 250195 Score = 50.1 bits (25), Expect = 0.009 Identities = 46/53 (86%) Strand = Plus / Minus Query: 379 gatattcatggtggagggaaagatttgatatttcctcatcatgagaatgagct 431 ||||||||| ||||||| | ||||| | ||||||||||||||| |||||||| Sbjct: 115906 gatattcatagtggaggaattgatttaagatttcctcatcatgataatgagct 115854
>gb|AE006831.1| Sulfolobus solfataricus P2 section 190 of 272 of the complete genome Length = 14785 Score = 50.1 bits (25), Expect = 0.009 Identities = 46/53 (86%) Strand = Plus / Minus Query: 376 tttgatattcatggtggagggaaagatttgatatttcctcatcatgagaatga 428 |||||||||||||| ||||| |||||||||||||| |||||||| ||||| Sbjct: 11347 tttgatattcatggaggaggagctgatttgatatttccgcatcatgaaaatga 11295 Score = 44.1 bits (22), Expect = 0.53 Identities = 34/38 (89%) Strand = Plus / Minus Query: 304 ccttggggtaacggaagaccaggatggcatattgaatg 341 ||||||||||| |||||||| |||||||| || ||||| Sbjct: 11419 ccttggggtaagggaagacctggatggcacatcgaatg 11382
>gb|AC124201.4| Mus musculus BAC clone RP23-329B24 from chromosome 8, complete sequence Length = 234158 Score = 50.1 bits (25), Expect = 0.009 Identities = 28/29 (96%) Strand = Plus / Minus Query: 414 tcatcatgagaatgagcttgcacaaagcc 442 ||||||||||||||||| ||||||||||| Sbjct: 137919 tcatcatgagaatgagcctgcacaaagcc 137891
>gb|CP000095.1| Prochlorococcus marinus str. NATL2A, complete genome Length = 1842899 Score = 50.1 bits (25), Expect = 0.009 Identities = 25/25 (100%) Strand = Plus / Plus Query: 404 tgatatttcctcatcatgagaatga 428 ||||||||||||||||||||||||| Sbjct: 710209 tgatatttcctcatcatgagaatga 710233
>gb|AC101790.5| Mus musculus chromosome 8, clone RP24-163M14, complete sequence Length = 202651 Score = 50.1 bits (25), Expect = 0.009 Identities = 28/29 (96%) Strand = Plus / Plus Query: 414 tcatcatgagaatgagcttgcacaaagcc 442 ||||||||||||||||| ||||||||||| Sbjct: 5385 tcatcatgagaatgagcctgcacaaagcc 5413
>dbj|BA000021.3| Wigglesworthia glossinidia endosymbiont of Glossina brevipalpis DNA, complete genome Length = 697724 Score = 50.1 bits (25), Expect = 0.009 Identities = 46/53 (86%) Strand = Plus / Minus Query: 376 tttgatattcatggtggagggaaagatttgatatttcctcatcatgagaatga 428 |||||||| ||||| |||||| ||||| ||||||||||||||||| ||||| Sbjct: 286743 tttgatatacatggaggagggtctgatttaatatttcctcatcatgaaaatga 286691
>gb|AE017334.2| Bacillus anthracis str. 'Ames Ancestor', complete genome Length = 5227419 Score = 48.1 bits (24), Expect = 0.034 Identities = 45/52 (86%) Strand = Plus / Plus Query: 377 ttgatattcatggtggagggaaagatttgatatttcctcatcatgagaatga 428 |||||||||||| ||| || |||| ||| ||||||||||||||||||||| Sbjct: 100520 ttgatattcatgctggtggtcaagacttggcatttcctcatcatgagaatga 100571
>gb|AE017225.1| Bacillus anthracis str. Sterne, complete genome Length = 5228663 Score = 48.1 bits (24), Expect = 0.034 Identities = 45/52 (86%) Strand = Plus / Plus Query: 377 ttgatattcatggtggagggaaagatttgatatttcctcatcatgagaatga 428 |||||||||||| ||| || |||| ||| ||||||||||||||||||||| Sbjct: 100521 ttgatattcatgctggtggtcaagacttggcatttcctcatcatgagaatga 100572
>ref|XM_645294.1| Entamoeba histolytica HM-1:IMSS cysteinyl-tRNA synthetase, putative (223.t00014) partial mRNA Length = 2106 Score = 48.1 bits (24), Expect = 0.034 Identities = 30/32 (93%) Strand = Plus / Plus Query: 316 ggaagaccaggatggcatattgaatgcagtgc 347 ||||||||||| |||||||||||||| ||||| Sbjct: 901 ggaagaccaggttggcatattgaatgtagtgc 932
>gb|CP000001.1| Bacillus cereus E33L, complete genome Length = 5300915 Score = 48.1 bits (24), Expect = 0.034 Identities = 45/52 (86%) Strand = Plus / Plus Query: 377 ttgatattcatggtggagggaaagatttgatatttcctcatcatgagaatga 428 |||||||||||| ||| || |||| ||| ||||||||||||||||||||| Sbjct: 100512 ttgatattcatgctggtggtcaagacttggcatttcctcatcatgagaatga 100563
>emb|BX248585.1| Blochmannia floridanus complete genome; segment 2/3 Length = 267050 Score = 48.1 bits (24), Expect = 0.034 Identities = 51/60 (85%) Strand = Plus / Plus Query: 379 gatattcatggtggagggaaagatttgatatttcctcatcatgagaatgagcttgcacaa 438 |||||||||||||||||| |||||| | ||||| |||||||| ||||| |||||||| Sbjct: 86906 gatattcatggtggagggtcagatttagtttttccgcatcatgaaaatgaaattgcacaa 86965 Score = 46.1 bits (23), Expect = 0.13 Identities = 23/23 (100%) Strand = Plus / Plus Query: 319 agaccaggatggcatattgaatg 341 ||||||||||||||||||||||| Sbjct: 86846 agaccaggatggcatattgaatg 86868
>gb|CP000235.1| Anaplasma phagocytophilum HZ, complete genome Length = 1471282 Score = 48.1 bits (24), Expect = 0.034 Identities = 36/40 (90%) Strand = Plus / Plus Query: 400 gatttgatatttcctcatcatgagaatgagcttgcacaaa 439 ||||| || |||||||||||||||||||| ||||| |||| Sbjct: 585660 gatttaatgtttcctcatcatgagaatgaacttgcgcaaa 585699
>gb|AE016877.1| Bacillus cereus ATCC 14579, complete genome Length = 5411809 Score = 48.1 bits (24), Expect = 0.034 Identities = 42/48 (87%) Strand = Plus / Plus Query: 295 tgggagagcccttggggtaacggaagaccaggatggcatattgaatgc 342 ||||| ||||||||||| | ||| | ||||||||||||||||||||| Sbjct: 105948 tgggaaagcccttgggggcaaggacgtccaggatggcatattgaatgc 105995
>gb|AE016879.1| Bacillus anthracis str. Ames, complete genome Length = 5227293 Score = 48.1 bits (24), Expect = 0.034 Identities = 45/52 (86%) Strand = Plus / Plus Query: 377 ttgatattcatggtggagggaaagatttgatatttcctcatcatgagaatga 428 |||||||||||| ||| || |||| ||| ||||||||||||||||||||| Sbjct: 100520 ttgatattcatgctggtggtcaagacttggcatttcctcatcatgagaatga 100571
>gb|AE017198.1| Lactobacillus johnsonii NCC 533, complete genome Length = 1992676 Score = 48.1 bits (24), Expect = 0.034 Identities = 54/64 (84%) Strand = Plus / Plus Query: 377 ttgatattcatggtggagggaaagatttgatatttcctcatcatgagaatgagcttgcac 436 |||||||||||||||| || |||||||| |||||| || ||||| |||||| |||| | Sbjct: 448559 ttgatattcatggtggtggccaagatttggaatttccacaccatgaaaatgagattgctc 448618 Query: 437 aaag 440 |||| Sbjct: 448619 aaag 448622
>ref|XM_637641.1| Dictyostelium discoideum cysteine-tRNA ligase (DDB0231320), partial mRNA Length = 1752 Score = 46.1 bits (23), Expect = 0.13 Identities = 38/43 (88%) Strand = Plus / Plus Query: 310 ggtaacggaagaccaggatggcatattgaatgcagtgcaatga 352 ||||| ||||||||||| |||||||| |||||| |||||||| Sbjct: 781 ggtaaaggaagaccaggttggcatatagaatgctctgcaatga 823
>gb|AC136224.2| Oryza sativa (japonica cultivar-group) chromosome 5 clone OSJNBb0006B22, complete sequence Length = 166052 Score = 46.1 bits (23), Expect = 0.13 Identities = 48/55 (87%), Gaps = 1/55 (1%) Strand = Plus / Plus Query: 20 ctgagcttcagtgcctgcctcctactcacgagccacgcgtgacagagcatattga 74 |||| ||||||||||| || ||||||||||||||||| | ||| |||||||||| Sbjct: 82143 ctgatcttcagtgcctccc-cctactcacgagccacggttaacaaagcatattga 82196
>gb|AC116977.2| Dictyostelium discoideum chromosome 2 map 5515173-5817331 strain AX4, complete sequence Length = 302156 Score = 46.1 bits (23), Expect = 0.13 Identities = 38/43 (88%) Strand = Plus / Plus Query: 310 ggtaacggaagaccaggatggcatattgaatgcagtgcaatga 352 ||||| ||||||||||| |||||||| |||||| |||||||| Sbjct: 142877 ggtaaaggaagaccaggttggcatatagaatgctctgcaatga 142919
>ref|XM_719851.1| Plasmodium yoelii yoelii str. 17XNL cysteinyl-tRNA synthetase (PY04618) partial mRNA Length = 1740 Score = 46.1 bits (23), Expect = 0.13 Identities = 32/35 (91%) Strand = Plus / Plus Query: 307 tggggtaacggaagaccaggatggcatattgaatg 341 |||||||| || |||||||| |||||||||||||| Sbjct: 688 tggggtaaaggtagaccaggttggcatattgaatg 722
>ref|XM_668528.1| Plasmodium berghei strain ANKA hypothetical protein (PB300790.00.0) partial mRNA Length = 1161 Score = 46.1 bits (23), Expect = 0.13 Identities = 32/35 (91%) Strand = Plus / Plus Query: 307 tggggtaacggaagaccaggatggcatattgaatg 341 |||||||| || |||||||| |||||||||||||| Sbjct: 688 tggggtaaaggcagaccaggttggcatattgaatg 722
>ref|XM_673203.1| Plasmodium berghei strain ANKA cysteine--tRNA ligase (PB000960.00.0) partial mRNA Length = 1749 Score = 46.1 bits (23), Expect = 0.13 Identities = 32/35 (91%) Strand = Plus / Plus Query: 307 tggggtaacggaagaccaggatggcatattgaatg 341 |||||||| || |||||||| |||||||||||||| Sbjct: 688 tggggtaaaggcagaccaggttggcatattgaatg 722
>gb|DQ366735.1| Uncultured Prochlorococcus marinus clone HOT0M-2B5 genomic sequence Length = 35254 Score = 46.1 bits (23), Expect = 0.13 Identities = 32/35 (91%) Strand = Plus / Minus Query: 307 tggggtaacggaagaccaggatggcatattgaatg 341 |||||||| || || |||||||||||||||||||| Sbjct: 26515 tggggtaaaggtaggccaggatggcatattgaatg 26481 Score = 42.1 bits (21), Expect = 2.1 Identities = 27/29 (93%) Strand = Plus / Minus Query: 400 gatttgatatttcctcatcatgagaatga 428 |||||||| ||||| |||||||||||||| Sbjct: 26422 gatttgatttttccacatcatgagaatga 26394
>gb|DQ366717.1| Uncultured Prochlorococcus marinus clone ASNC3046 genomic sequence Length = 33332 Score = 46.1 bits (23), Expect = 0.13 Identities = 32/35 (91%) Strand = Plus / Plus Query: 307 tggggtaacggaagaccaggatggcatattgaatg 341 |||||||| || || |||||||||||||||||||| Sbjct: 27165 tggggtaaaggtaggccaggatggcatattgaatg 27199 Score = 42.1 bits (21), Expect = 2.1 Identities = 27/29 (93%) Strand = Plus / Plus Query: 400 gatttgatatttcctcatcatgagaatga 428 |||||||| ||||| |||||||||||||| Sbjct: 27258 gatttgatttttccacatcatgagaatga 27286
>dbj|AP008211.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 5, complete sequence Length = 29737217 Score = 46.1 bits (23), Expect = 0.13 Identities = 48/55 (87%), Gaps = 1/55 (1%) Strand = Plus / Plus Query: 20 ctgagcttcagtgcctgcctcctactcacgagccacgcgtgacagagcatattga 74 |||| ||||||||||| || ||||||||||||||||| | ||| |||||||||| Sbjct: 14746729 ctgatcttcagtgcctccc-cctactcacgagccacggttaacaaagcatattga 14746782
>dbj|BA000016.3| Clostridium perfringens str. 13 DNA, complete genome Length = 3031430 Score = 46.1 bits (23), Expect = 0.13 Identities = 26/27 (96%) Strand = Plus / Minus Query: 316 ggaagaccaggatggcatattgaatgc 342 |||||||||||||||||||| |||||| Sbjct: 2775088 ggaagaccaggatggcatatagaatgc 2775062
>dbj|AK071302.1| Oryza sativa (japonica cultivar-group) cDNA clone:J023088K17, full insert sequence Length = 2132 Score = 46.1 bits (23), Expect = 0.13 Identities = 48/55 (87%), Gaps = 1/55 (1%) Strand = Plus / Plus Query: 20 ctgagcttcagtgcctgcctcctactcacgagccacgcgtgacagagcatattga 74 |||| ||||||||||| || ||||||||||||||||| | ||| |||||||||| Sbjct: 612 ctgatcttcagtgcctccc-cctactcacgagccacggttaacaaagcatattga 665
>emb|BX571856.1| Staphylococcus aureus subsp. aureus strain MRSA252, complete genome Length = 2902619 Score = 46.1 bits (23), Expect = 0.13 Identities = 23/23 (100%) Strand = Plus / Plus Query: 319 agaccaggatggcatattgaatg 341 ||||||||||||||||||||||| Sbjct: 582965 agaccaggatggcatattgaatg 582987
>emb|AJ938182.1| Staphylococcus aureus RF122 complete genome Length = 2742531 Score = 46.1 bits (23), Expect = 0.13 Identities = 23/23 (100%) Strand = Plus / Plus Query: 319 agaccaggatggcatattgaatg 341 ||||||||||||||||||||||| Sbjct: 540304 agaccaggatggcatattgaatg 540326
>gb|AY833063.1| Wolbachia pipientis strain wRi cysteinyl-tRNA synthetase (cysS) gene, partial cds Length = 1213 Score = 44.1 bits (22), Expect = 0.53 Identities = 52/62 (83%) Strand = Plus / Plus Query: 376 tttgatattcatggtggagggaaagatttgatatttcctcatcatgagaatgagcttgca 435 ||||||||||||||||| || | |||||| ||||||||| ||||| ||||| ||||| Sbjct: 559 tttgatattcatggtggcggcatagatttacaatttcctcaccatgaaaatgaaattgca 618 Query: 436 ca 437 || Sbjct: 619 ca 620
>gb|CP000061.1| Aster yellows witches'-broom phytoplasma AYWB, complete genome Length = 706569 Score = 44.1 bits (22), Expect = 0.53 Identities = 43/50 (86%) Strand = Plus / Minus Query: 379 gatattcatggtggagggaaagatttgatatttcctcatcatgagaatga 428 ||||||||||| ||||| | |||||| | |||||||||||| || ||||| Sbjct: 602578 gatattcatggaggaggaacagatttaaaatttcctcatcacgaaaatga 602529
>emb|CR522870.1| Desulfotalea psychrophila LSv54 chromosome Length = 3523383 Score = 44.1 bits (22), Expect = 0.53 Identities = 25/26 (96%) Strand = Plus / Plus Query: 286 gagccttcttgggagagcccttgggg 311 ||||| |||||||||||||||||||| Sbjct: 3313202 gagccctcttgggagagcccttgggg 3313227
>emb|BX842645.1| Mycoplasma mycoides subsp. mycoides SC genomic DNA, complete sequence; segment 4/4 Length = 167954 Score = 44.1 bits (22), Expect = 0.53 Identities = 43/50 (86%) Strand = Plus / Plus Query: 379 gatattcatggtggagggaaagatttgatatttcctcatcatgagaatga 428 |||||||||| |||||| | ||||| | ||||||||||||||| ||||| Sbjct: 44760 gatattcatgttggaggaattgatttaaaatttcctcatcatgaaaatga 44809
>emb|BX572092.1| Prochlorococcus marinus MED4 complete genome; segment 3/5 Length = 348178 Score = 44.1 bits (22), Expect = 0.53 Identities = 25/26 (96%) Strand = Plus / Plus Query: 69 tattgaaaatatcataaagttaatca 94 ||||||||||||| |||||||||||| Sbjct: 340829 tattgaaaatatcctaaagttaatca 340854
>emb|AL591974.1| Listeria monocytogenes strain EGD, complete genome, segment 2/12 Length = 160050 Score = 44.1 bits (22), Expect = 0.53 Identities = 49/58 (84%) Strand = Plus / Plus Query: 377 ttgatattcatggtggagggaaagatttgatatttcctcatcatgagaatgagcttgc 434 |||||||||||| || ||| ||||||| |||||||||| |||||| ||||| |||| Sbjct: 60138 ttgatattcatgcgggtgggcaagatttagtatttcctcaccatgaggatgagattgc 60195
>dbj|BA000001.2| Pyrococcus horikoshii OT3 DNA, complete genome Length = 1738505 Score = 44.1 bits (22), Expect = 0.53 Identities = 46/54 (85%) Strand = Plus / Minus Query: 376 tttgatattcatggtggagggaaagatttgatatttcctcatcatgagaatgag 429 |||||||| ||||||||||| || || | ||||| ||||| |||||||||||| Sbjct: 571647 tttgatatacatggtggaggaaatgacctaatattccctcaccatgagaatgag 571594
>gb|AE017196.1| Wolbachia endosymbiont of Drosophila melanogaster, complete genome Length = 1267782 Score = 44.1 bits (22), Expect = 0.53 Identities = 52/62 (83%) Strand = Plus / Minus Query: 376 tttgatattcatggtggagggaaagatttgatatttcctcatcatgagaatgagcttgca 435 ||||||||||||||||| || | |||||| ||||||||| ||||| ||||| ||||| Sbjct: 137260 tttgatattcatggtggcggcatagatttacaatttcctcaccatgaaaatgaaattgca 137201 Query: 436 ca 437 || Sbjct: 137200 ca 137199
>gb|AE017355.1| Bacillus thuringiensis serovar konkukian str. 97-27, complete genome Length = 5237682 Score = 42.1 bits (21), Expect = 2.1 Identities = 21/21 (100%) Strand = Plus / Plus Query: 408 atttcctcatcatgagaatga 428 ||||||||||||||||||||| Sbjct: 106279 atttcctcatcatgagaatga 106299
>gb|AE017199.1| Nanoarchaeum equitans Kin4-M, complete genome Length = 490885 Score = 42.1 bits (21), Expect = 2.1 Identities = 27/29 (93%) Strand = Plus / Plus Query: 400 gatttgatatttcctcatcatgagaatga 428 |||||||||||||| |||||||| ||||| Sbjct: 49531 gatttgatatttccacatcatgaaaatga 49559
>ref|XM_740591.1| Plasmodium chabaudi chabaudi cysteine--tRNA ligase (PC000880.01.0) partial mRNA Length = 1749 Score = 42.1 bits (21), Expect = 2.1 Identities = 48/57 (84%) Strand = Plus / Plus Query: 285 tgagccttcttgggagagcccttggggtaacggaagaccaggatggcatattgaatg 341 |||||| |||||||| ||| ||||| || || |||||||| |||||||||||||| Sbjct: 666 tgagccatcttgggattccccatggggcaaaggtagaccaggttggcatattgaatg 722
>gb|DQ366718.1| Uncultured Prochlorococcus marinus clone ASNC612 genomic sequence Length = 41637 Score = 42.1 bits (21), Expect = 2.1 Identities = 27/29 (93%) Strand = Plus / Minus Query: 400 gatttgatatttcctcatcatgagaatga 428 |||||||| ||||| |||||||||||||| Sbjct: 39491 gatttgatttttccacatcatgagaatga 39463
>emb|AL353664.14| Human DNA sequence from clone RP11-140B17 on chromosome 10, complete sequence Length = 79943 Score = 42.1 bits (21), Expect = 2.1 Identities = 24/25 (96%) Strand = Plus / Minus Query: 68 atattgaaaatatcataaagttaat 92 ||||| ||||||||||||||||||| Sbjct: 71986 atatttaaaatatcataaagttaat 71962
>emb|AL596064.3| Zebrafish DNA sequence from clone BUSM1-55K10 in linkage group 17, complete sequence Length = 12264 Score = 42.1 bits (21), Expect = 2.1 Identities = 24/25 (96%) Strand = Plus / Plus Query: 497 acatcgatgaccaaaagatgtcaaa 521 |||||| |||||||||||||||||| Sbjct: 5942 acatcgctgaccaaaagatgtcaaa 5966
>emb|CR394561.8| Zebrafish DNA sequence from clone CH211-28G14 in linkage group 17, complete sequence Length = 154908 Score = 42.1 bits (21), Expect = 2.1 Identities = 24/25 (96%) Strand = Plus / Plus Query: 497 acatcgatgaccaaaagatgtcaaa 521 |||||| |||||||||||||||||| Sbjct: 33501 acatcgctgaccaaaagatgtcaaa 33525
>dbj|BA000023.2| Sulfolobus tokodaii str. 7 DNA, complete genome Length = 2694756 Score = 42.1 bits (21), Expect = 2.1 Identities = 45/53 (84%) Strand = Plus / Minus Query: 376 tttgatattcatggtggagggaaagatttgatatttcctcatcatgagaatga 428 ||||||||||| || ||||| | |||| | || |||||||||||||| ||||| Sbjct: 2253032 tttgatattcacggcggaggaatagatcttatttttcctcatcatgaaaatga 2252980
>gb|AE010214.1| Pyrococcus furiosus DSM 3638, section 89 of 173 of the complete genome Length = 11615 Score = 42.1 bits (21), Expect = 2.1 Identities = 45/53 (84%) Strand = Plus / Plus Query: 376 tttgatattcatggtggagggaaagatttgatatttcctcatcatgagaatga 428 |||||||||||||| ||||| || || || ||||| || |||||||| ||||| Sbjct: 763 tttgatattcatggaggaggaaatgacttaatattcccccatcatgaaaatga 815
>gb|AF405551.1|AF405551 Helicobacter pylori cysteinyl-tRNA synthetase (cysS) gene, partial cds Length = 1218 Score = 42.1 bits (21), Expect = 2.1 Identities = 24/25 (96%) Strand = Plus / Plus Query: 468 caaatgctggatgcataatggcttt 492 ||||| ||||||||||||||||||| Sbjct: 648 caaatactggatgcataatggcttt 672
>gb|AE016830.1| Enterococcus faecalis V583, complete genome Length = 3218031 Score = 42.1 bits (21), Expect = 2.1 Identities = 51/61 (83%) Strand = Plus / Plus Query: 377 ttgatattcatggtggagggaaagatttgatatttcctcatcatgagaatgagcttgcac 436 |||||||||| ||||| || ||||||| |||||| |||||||||||||| |||||| Sbjct: 48902 ttgatattcacggtggtggacaagatttagaatttccacatcatgagaatgaaattgcac 48961 Query: 437 a 437 | Sbjct: 48962 a 48962
>gb|AE017194.1| Bacillus cereus ATCC 10987, complete genome Length = 5224283 Score = 42.1 bits (21), Expect = 2.1 Identities = 21/21 (100%) Strand = Plus / Plus Query: 408 atttcctcatcatgagaatga 428 ||||||||||||||||||||| Sbjct: 100551 atttcctcatcatgagaatga 100571
>emb|AL928992.7| Mouse DNA sequence from clone RP23-208O9 on chromosome 2, complete sequence Length = 136064 Score = 42.1 bits (21), Expect = 2.1 Identities = 21/21 (100%) Strand = Plus / Plus Query: 17 tggctgagcttcagtgcctgc 37 ||||||||||||||||||||| Sbjct: 96257 tggctgagcttcagtgcctgc 96277
>gb|CP000111.1| Prochlorococcus marinus str. MIT 9312, complete genome Length = 1709204 Score = 40.1 bits (20), Expect = 8.3 Identities = 20/20 (100%) Strand = Plus / Plus Query: 322 ccaggatggcatattgaatg 341 |||||||||||||||||||| Sbjct: 1152975 ccaggatggcatattgaatg 1152994
>ref|XM_632277.1| Dictyostelium discoideum cysteine-tRNA ligase (DDB0231318), partial mRNA Length = 1983 Score = 40.1 bits (20), Expect = 8.3 Identities = 20/20 (100%) Strand = Plus / Plus Query: 322 ccaggatggcatattgaatg 341 |||||||||||||||||||| Sbjct: 748 ccaggatggcatattgaatg 767
>ref|XM_466592.1| Oryza sativa (japonica cultivar-group), mRNA Length = 3118 Score = 40.1 bits (20), Expect = 8.3 Identities = 23/24 (95%) Strand = Plus / Plus Query: 458 aaagtgaggtcaaatgctggatgc 481 |||||||||||||||||| ||||| Sbjct: 1770 aaagtgaggtcaaatgcttgatgc 1793
>gb|CP000141.1| Carboxydothermus hydrogenoformans Z-2901, complete genome Length = 2401520 Score = 40.1 bits (20), Expect = 8.3 Identities = 41/48 (85%) Strand = Plus / Minus Query: 294 ttgggagagcccttggggtaacggaagaccaggatggcatattgaatg 341 |||||| ||||| |||||| |||||||| ||||||||||| ||||| Sbjct: 2095098 ttgggaaagcccctggggtccaggaagaccgggatggcatatcgaatg 2095051
>gb|CP000117.1| Anabaena variabilis ATCC 29413 chromosome, complete sequence Length = 6365727 Score = 40.1 bits (20), Expect = 8.3 Identities = 44/52 (84%) Strand = Plus / Plus Query: 377 ttgatattcatggtggagggaaagatttgatatttcctcatcatgagaatga 428 |||||||||||||||| || ||||||||| ||||| || ||||| ||||| Sbjct: 4628297 ttgatattcatggtggtggtggagatttgatttttccccaccatgaaaatga 4628348
>gb|U80033.3| Caenorhabditis elegans cosmid T23H2, complete sequence Length = 22469 Score = 40.1 bits (20), Expect = 8.3 Identities = 20/20 (100%) Strand = Plus / Plus Query: 69 tattgaaaatatcataaagt 88 |||||||||||||||||||| Sbjct: 10726 tattgaaaatatcataaagt 10745
>ref|XM_758078.1| Theileria parva strain Muguga chromosome 3 hypothetical protein (TP03_0153) partial mRNA Length = 2339 Score = 40.1 bits (20), Expect = 8.3 Identities = 20/20 (100%) Strand = Plus / Minus Query: 401 atttgatatttcctcatcat 420 |||||||||||||||||||| Sbjct: 711 atttgatatttcctcatcat 692
>gb|AC079780.6| Homo sapiens BAC clone RP11-379L16 from 7, complete sequence Length = 54379 Score = 40.1 bits (20), Expect = 8.3 Identities = 20/20 (100%) Strand = Plus / Minus Query: 155 acaattttcctgaatatctg 174 |||||||||||||||||||| Sbjct: 2370 acaattttcctgaatatctg 2351
>emb|CR925794.8| Zebrafish DNA sequence from clone CH211-202A23 in linkage group 13, complete sequence Length = 132763 Score = 40.1 bits (20), Expect = 8.3 Identities = 20/20 (100%) Strand = Plus / Plus Query: 59 tgacagagcatattgaaaat 78 |||||||||||||||||||| Sbjct: 82405 tgacagagcatattgaaaat 82424
>emb|AL513102.8| Human DNA sequence from clone RP11-32B11 on chromosome 9 Contains the 5' end of the CRSP8 gene for subunit 8 of a cofactor required for Sp1 transcriptional activation and a novel gene, complete sequence Length = 142933 Score = 40.1 bits (20), Expect = 8.3 Identities = 20/20 (100%) Strand = Plus / Minus Query: 533 acttcttcacgatcagagat 552 |||||||||||||||||||| Sbjct: 5556 acttcttcacgatcagagat 5537
>emb|AL136441.16| Human DNA sequence from clone RP11-19D22 on chromosome 13q22.1-22.3 Contains a CpG island, complete sequence Length = 180992 Score = 40.1 bits (20), Expect = 8.3 Identities = 20/20 (100%) Strand = Plus / Plus Query: 66 gcatattgaaaatatcataa 85 |||||||||||||||||||| Sbjct: 3434 gcatattgaaaatatcataa 3453
>emb|AJ130879.2|CST130879 Clostridium sticklandii ORFX' (partial), cysKERS genes, ORFY, prdABCDEFRX genes and prdG' gene (partial) Length = 15086 Score = 40.1 bits (20), Expect = 8.3 Identities = 20/20 (100%) Strand = Plus / Plus Query: 319 agaccaggatggcatattga 338 |||||||||||||||||||| Sbjct: 2679 agaccaggatggcatattga 2698
>ref|XM_791806.1| PREDICTED: Strongylocentrotus purpuratus similar to CG8257-PA (LOC592274), mRNA Length = 1578 Score = 40.1 bits (20), Expect = 8.3 Identities = 23/24 (95%) Strand = Plus / Plus Query: 319 agaccaggatggcatattgaatgc 342 ||||||||||||||||| |||||| Sbjct: 682 agaccaggatggcatatcgaatgc 705
>emb|CR759869.14| Zebrafish DNA sequence from clone DKEY-238F11 in linkage group 13, complete sequence Length = 284763 Score = 40.1 bits (20), Expect = 8.3 Identities = 20/20 (100%) Strand = Plus / Minus Query: 59 tgacagagcatattgaaaat 78 |||||||||||||||||||| Sbjct: 164585 tgacagagcatattgaaaat 164566
>emb|CR925715.4| Zebrafish DNA sequence from clone CH211-212C11 in linkage group 14, complete sequence Length = 132743 Score = 40.1 bits (20), Expect = 8.3 Identities = 20/20 (100%) Strand = Plus / Plus Query: 59 tgacagagcatattgaaaat 78 |||||||||||||||||||| Sbjct: 82417 tgacagagcatattgaaaat 82436
>gb|AC106898.5| Homo sapiens BAC clone RP11-310K19 from 4, complete sequence Length = 171846 Score = 40.1 bits (20), Expect = 8.3 Identities = 23/24 (95%) Strand = Plus / Minus Query: 355 gctcactatttagggcatgtgttt 378 |||||||||||| ||||||||||| Sbjct: 84085 gctcactatttatggcatgtgttt 84062
>gb|AY714229.1| Meloidogyne incognita chymotrypsin-like serine proteinase (ser1) mRNA, complete cds Length = 1388 Score = 40.1 bits (20), Expect = 8.3 Identities = 20/20 (100%) Strand = Plus / Minus Query: 327 atggcatattgaatgcagtg 346 |||||||||||||||||||| Sbjct: 367 atggcatattgaatgcagtg 348
>dbj|AP008208.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, complete sequence Length = 35954743 Score = 40.1 bits (20), Expect = 8.3 Identities = 23/24 (95%) Strand = Plus / Plus Query: 458 aaagtgaggtcaaatgctggatgc 481 |||||||||||||||||| ||||| Sbjct: 23583444 aaagtgaggtcaaatgcttgatgc 23583467
>gb|AY208922.1| Synthetic construct cysteinyl tRNA synthetase (cysS), neomycin phosphotransferase (kmr) genes, complete cds; and nonfunctional vacuolating cytotoxin precursor (vacA) gene, partial sequence Length = 3819 Score = 40.1 bits (20), Expect = 8.3 Identities = 23/24 (95%) Strand = Plus / Plus Query: 469 aaatgctggatgcataatggcttt 492 |||| ||||||||||||||||||| Sbjct: 763 aaatactggatgcataatggcttt 786
>gb|AC016759.11| Homo sapiens BAC clone RP11-535J8 from 2, complete sequence Length = 219574 Score = 40.1 bits (20), Expect = 8.3 Identities = 23/24 (95%) Strand = Plus / Minus Query: 376 tttgatattcatggtggagggaaa 399 ||||||||||||| |||||||||| Sbjct: 56450 tttgatattcatgatggagggaaa 56427
>gb|AC078789.16| Homo sapiens 12 BAC RP11-769N19 (Roswell Park Cancer Institute Human BAC Library) complete sequence Length = 197554 Score = 40.1 bits (20), Expect = 8.3 Identities = 26/28 (92%) Strand = Plus / Plus Query: 68 atattgaaaatatcataaagttaatcac 95 |||||||| |||||| |||||||||||| Sbjct: 165024 atattgaacatatcagaaagttaatcac 165051
>gb|AC136603.3| Homo sapiens chromosome 16 clone RP11-133M8, complete sequence Length = 183708 Score = 40.1 bits (20), Expect = 8.3 Identities = 20/20 (100%) Strand = Plus / Plus Query: 85 aagttaatcacagagataat 104 |||||||||||||||||||| Sbjct: 151242 aagttaatcacagagataat 151261
>gb|AC009141.7| Homo sapiens chromosome 16 clone RP11-543G23, complete sequence Length = 201716 Score = 40.1 bits (20), Expect = 8.3 Identities = 20/20 (100%) Strand = Plus / Plus Query: 85 aagttaatcacagagataat 104 |||||||||||||||||||| Sbjct: 78699 aagttaatcacagagataat 78718
>gb|AE014133.1| Streptococcus mutans UA159, complete genome Length = 2030921 Score = 40.1 bits (20), Expect = 8.3 Identities = 23/24 (95%) Strand = Plus / Plus Query: 474 ctggatgcataatggctttattaa 497 ||||||||||||||||||| |||| Sbjct: 161616 ctggatgcataatggctttgttaa 161639
>gb|AC107209.4| Homo sapiens BAC clone RP11-4F12 from 2, complete sequence Length = 113078 Score = 40.1 bits (20), Expect = 8.3 Identities = 23/24 (95%) Strand = Plus / Minus Query: 376 tttgatattcatggtggagggaaa 399 ||||||||||||| |||||||||| Sbjct: 87658 tttgatattcatgatggagggaaa 87635
>dbj|BA000003.2| Buchnera aphidicola str. APS (Acyrthosiphon pisum) genomic DNA, complete sequence Length = 640681 Score = 40.1 bits (20), Expect = 8.3 Identities = 20/20 (100%) Strand = Plus / Minus Query: 328 tggcatattgaatgcagtgc 347 |||||||||||||||||||| Sbjct: 537572 tggcatattgaatgcagtgc 537553
>dbj|BA000019.2| Nostoc sp. PCC 7120 DNA, complete genome Length = 6413771 Score = 40.1 bits (20), Expect = 8.3 Identities = 44/52 (84%) Strand = Plus / Minus Query: 377 ttgatattcatggtggagggaaagatttgatatttcctcatcatgagaatga 428 |||||||||||||||| || ||||||||| ||||| || ||||| ||||| Sbjct: 1279709 ttgatattcatggtggtggtggagatttgatttttccccaccatgaaaatga 1279658
>dbj|AP005385.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, BAC clone:OJ1791_B03 Length = 166214 Score = 40.1 bits (20), Expect = 8.3 Identities = 23/24 (95%) Strand = Plus / Plus Query: 458 aaagtgaggtcaaatgctggatgc 481 |||||||||||||||||| ||||| Sbjct: 149127 aaagtgaggtcaaatgcttgatgc 149150
>dbj|AP004124.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, BAC clone:OJ1669_F01 Length = 140019 Score = 40.1 bits (20), Expect = 8.3 Identities = 23/24 (95%) Strand = Plus / Plus Query: 458 aaagtgaggtcaaatgctggatgc 481 |||||||||||||||||| ||||| Sbjct: 24544 aaagtgaggtcaaatgcttgatgc 24567
>dbj|AK111593.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013093F08, full insert sequence Length = 3116 Score = 40.1 bits (20), Expect = 8.3 Identities = 23/24 (95%) Strand = Plus / Plus Query: 458 aaagtgaggtcaaatgctggatgc 481 |||||||||||||||||| ||||| Sbjct: 1770 aaagtgaggtcaaatgcttgatgc 1793
>emb|AL929534.12| Mouse DNA sequence from clone RP23-275L13 on chromosome 2, complete sequence Length = 190466 Score = 40.1 bits (20), Expect = 8.3 Identities = 20/20 (100%) Strand = Plus / Minus Query: 323 caggatggcatattgaatgc 342 |||||||||||||||||||| Sbjct: 88845 caggatggcatattgaatgc 88826
>gb|AC078872.13| Homo sapiens 12q BAC RP11-542G14 (Roswell Park Cancer Institute Human BAC Library) complete sequence Length = 166585 Score = 40.1 bits (20), Expect = 8.3 Identities = 26/28 (92%) Strand = Plus / Plus Query: 68 atattgaaaatatcataaagttaatcac 95 |||||||| |||||| |||||||||||| Sbjct: 47103 atattgaacatatcagaaagttaatcac 47130 Database: nt Posted date: May 29, 2006 11:10 AM Number of letters in database: 3,984,495,279 Number of sequences in database: 917,343 Database: /shigen/export/home/twatanab/db/nt/nt.01 Posted date: May 29, 2006 11:16 AM Number of letters in database: 3,988,174,986 Number of sequences in database: 835,257 Database: /shigen/export/home/twatanab/db/nt/nt.02 Posted date: May 29, 2006 11:21 AM Number of letters in database: 3,991,246,324 Number of sequences in database: 771,481 Database: /shigen/export/home/twatanab/db/nt/nt.03 Posted date: May 29, 2006 11:27 AM Number of letters in database: 3,990,718,311 Number of sequences in database: 977,174 Database: /shigen/export/home/twatanab/db/nt/nt.04 Posted date: May 29, 2006 11:29 AM Number of letters in database: 1,278,410,368 Number of sequences in database: 400,813 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 5,470,373 Number of Sequences: 3902068 Number of extensions: 5470373 Number of successful extensions: 100153 Number of sequences better than 10.0: 125 Number of HSP's better than 10.0 without gapping: 122 Number of HSP's successfully gapped in prelim test: 3 Number of HSP's that attempted gapping in prelim test: 98972 Number of HSP's gapped (non-prelim): 1171 length of query: 609 length of database: 17,233,045,268 effective HSP length: 23 effective length of query: 586 effective length of database: 17,143,297,704 effective search space: 10045972454544 effective search space used: 10045972454544 T: 0 A: 0 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 20 (40.1 bits)
