>gb|AC025480.7| Homo sapiens chromosome 18, clone RP11-12N19, complete sequence
          Length = 169594

 Score = 44.1 bits (22), Expect = 0.47
 Identities = 22/22 (100%)
 Strand = Plus / Minus

                                    
Query: 420    tatcttgtcaatgtgcaaacag 441
              ||||||||||||||||||||||
Sbjct: 152394 tatcttgtcaatgtgcaaacag 152373

>dbj|AP008212.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 6, complete
                sequence
          Length = 30731886

 Score = 44.1 bits (22), Expect = 0.47
 Identities = 25/26 (96%)
 Strand = Plus / Minus

                                          
Query: 285      tcagattagcagtaggaattactcgt 310
                ||||||||||| ||||||||||||||
Sbjct: 24793571 tcagattagcactaggaattactcgt 24793546

>dbj|AP004737.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 6, BAC
            clone:OSJNBa0072A21
          Length = 158287

 Score = 44.1 bits (22), Expect = 0.47
 Identities = 25/26 (96%)
 Strand = Plus / Minus

                                      
Query: 285  tcagattagcagtaggaattactcgt 310
            ||||||||||| ||||||||||||||
Sbjct: 4654 tcagattagcactaggaattactcgt 4629

>dbj|AP004680.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 6, BAC
              clone:OSJNBa0029G06
          Length = 169711

 Score = 44.1 bits (22), Expect = 0.47
 Identities = 25/26 (96%)
 Strand = Plus / Minus

                                        
Query: 285    tcagattagcagtaggaattactcgt 310
              ||||||||||| ||||||||||||||
Sbjct: 127252 tcagattagcactaggaattactcgt 127227

>gb|DQ214785.1| Taeniopygia guttata clone 0058P0039G04
           coiled-coil-helix-coiled-coil-helix domain containing 2
           variant 1-like mRNA, complete sequence
          Length = 885

 Score = 42.1 bits (21), Expect = 1.9
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                
Query: 393 gcacaaggagtctgctgaaga 413
           |||||||||||||||||||||
Sbjct: 564 gcacaaggagtctgctgaaga 584

>gb|AY591736.1| Mus musculus clone IgKVk4-91 immunoglobulin kappa-like gene, partial
            sequence
          Length = 2501

 Score = 42.1 bits (21), Expect = 1.9
 Identities = 24/25 (96%)
 Strand = Plus / Plus

                                     
Query: 207  ctctgtctctctcccttgcttttcc 231
            |||| ||||||||||||||||||||
Sbjct: 1099 ctctctctctctcccttgcttttcc 1123

>gb|AC136710.8| Mus musculus chromosome 19, clone RP23-35B13, complete sequence
          Length = 206056

 Score = 42.1 bits (21), Expect = 1.9
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                  
Query: 81    agatttacctgaacagaacac 101
             |||||||||||||||||||||
Sbjct: 22343 agatttacctgaacagaacac 22323

>gb|AC113030.5| Mus musculus chromosome 6, clone RP23-211L5, complete sequence
          Length = 187655

 Score = 42.1 bits (21), Expect = 1.9
 Identities = 24/25 (96%)
 Strand = Plus / Plus

                                       
Query: 207    ctctgtctctctcccttgcttttcc 231
              |||| ||||||||||||||||||||
Sbjct: 158741 ctctctctctctcccttgcttttcc 158765

>emb|AL606724.17| Mouse DNA sequence from clone RP23-285D3 on chromosome 11 Contains part
             of a novel gene, a heat shock protein (Hsp) pseudogene and
             a CpG island, complete sequence
          Length = 160470

 Score = 42.1 bits (21), Expect = 1.9
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                  
Query: 208   tctgtctctctcccttgcttt 228
             |||||||||||||||||||||
Sbjct: 59960 tctgtctctctcccttgcttt 59940

>gb|AC022780.19| Mus musculus chromosome 11, clone RP23-179C3, complete sequence
          Length = 237498

 Score = 42.1 bits (21), Expect = 1.9
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                   
Query: 208    tctgtctctctcccttgcttt 228
              |||||||||||||||||||||
Sbjct: 168642 tctgtctctctcccttgcttt 168622

>emb|AL845539.12| Mouse DNA sequence from clone RP23-263O6 on chromosome 2, complete
             sequence
          Length = 177800

 Score = 42.1 bits (21), Expect = 1.9
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                  
Query: 398   aggagtctgctgaagacacaa 418
             |||||||||||||||||||||
Sbjct: 33090 aggagtctgctgaagacacaa 33070

>emb|AJ231229.1|MMU231229 Mus musculus IgVk kf4 gene
          Length = 786

 Score = 42.1 bits (21), Expect = 1.9
 Identities = 24/25 (96%)
 Strand = Plus / Plus

                                    
Query: 207 ctctgtctctctcccttgcttttcc 231
           |||| ||||||||||||||||||||
Sbjct: 348 ctctctctctctcccttgcttttcc 372

>emb|CT005239.3| Pan troglodytes chromosome X clone PTB-125H24 map Xq28, complete sequence
          Length = 262483

 Score = 40.1 bits (20), Expect = 7.4
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 207    ctctgtctctctcccttgct 226
              ||||||||||||||||||||
Sbjct: 238193 ctctgtctctctcccttgct 238212

>gb|AC115754.7| Mus musculus chromosome 12, clone RP23-34D20, complete sequence
          Length = 217173

 Score = 40.1 bits (20), Expect = 7.4
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 207   ctctgtctctctcccttgct 226
             ||||||||||||||||||||
Sbjct: 52390 ctctgtctctctcccttgct 52409

>emb|Z85987.13|HS112K5 Human DNA sequence from clone RP1-112K5 on chromosome Xp11 Contains the
             FGD1 gene for faciogenital dysplasia (Aarskog-Scott
             syndrome) protein, a novel gene and a CpG island, complete
             sequence
          Length = 109891

 Score = 40.1 bits (20), Expect = 7.4
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 207   ctctgtctctctcccttgct 226
             ||||||||||||||||||||
Sbjct: 32764 ctctgtctctctcccttgct 32783

>emb|AL606467.5| Human DNA sequence from clone RP13-172P16 on chromosome Xp21.1-21.3
            Contains a High mobility group protein 1
            (HMG-1)(LOC340573) pseudogene, a novel gene and the 5'end
            of a novel gene (LOC158730), complete sequence
          Length = 138093

 Score = 40.1 bits (20), Expect = 7.4
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 207  ctctgtctctctcccttgct 226
            ||||||||||||||||||||
Sbjct: 8391 ctctgtctctctcccttgct 8372

>emb|AL008731.1|HS514K20 Human DNA sequence from clone RP3-514K20 on chromosome 6p22.3-24.3
             Contains a CpG island, complete sequence
          Length = 100368

 Score = 40.1 bits (20), Expect = 7.4
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 421   atcttgtcaatgtgcaaaca 440
             ||||||||||||||||||||
Sbjct: 96903 atcttgtcaatgtgcaaaca 96884

>ref|XM_789492.1| PREDICTED: Strongylocentrotus purpuratus similar to
           Serine/threonine-protein kinase Chk2 (LOC589861), mRNA
          Length = 1401

 Score = 40.1 bits (20), Expect = 7.4
 Identities = 22/23 (95%)
 Strand = Plus / Plus

                                  
Query: 97  aacacacaggnatctcaagccag 119
           |||||||||| ||||||||||||
Sbjct: 948 aacacacagggatctcaagccag 970

>emb|CR749699.1| Homo sapiens mRNA; cDNA DKFZp762O2215 (from clone DKFZp762O2215)
          Length = 1659

 Score = 40.1 bits (20), Expect = 7.4
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 152  atggttgaagaaaagtggaa 171
            ||||||||||||||||||||
Sbjct: 1235 atggttgaagaaaagtggaa 1254

>gb|DP000050.1| Felis catus target 126 genomic scaffold
          Length = 269350

 Score = 40.1 bits (20), Expect = 7.4
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 218   tcccttgcttttccagcatc 237
             ||||||||||||||||||||
Sbjct: 33908 tcccttgcttttccagcatc 33927

>gb|AC073834.6| Homo sapiens BAC clone RP11-250N10 from 2, complete sequence
          Length = 172415

 Score = 40.1 bits (20), Expect = 7.4
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 152   atggttgaagaaaagtggaa 171
             ||||||||||||||||||||
Sbjct: 34743 atggttgaagaaaagtggaa 34762

>emb|CT485603.4| RP43-005L22, complete sequence
          Length = 204041

 Score = 40.1 bits (20), Expect = 7.4
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 207  ctctgtctctctcccttgct 226
            ||||||||||||||||||||
Sbjct: 8685 ctctgtctctctcccttgct 8666

>emb|CT030723.18| Mouse DNA sequence from clone RP23-33L24 on chromosome 16, complete
              sequence
          Length = 241451

 Score = 40.1 bits (20), Expect = 7.4
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                      
Query: 207    ctctgtctctctcccttgcttttc 230
              ||||||||||||||||| ||||||
Sbjct: 104862 ctctgtctctctccctttcttttc 104839

>gb|AC137947.12| Mus musculus chromosome 5, clone RP23-362I3, complete sequence
          Length = 214295

 Score = 40.1 bits (20), Expect = 7.4
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 203    ggcgctctgtctctctccct 222
              ||||||||||||||||||||
Sbjct: 134514 ggcgctctgtctctctccct 134495

>gb|AC154415.3| Mus musculus BAC clone RP24-232A21 from chromosome 16, complete sequence
          Length = 177893

 Score = 40.1 bits (20), Expect = 7.4
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                      
Query: 207    ctctgtctctctcccttgcttttc 230
              ||||||||||||||||| ||||||
Sbjct: 121562 ctctgtctctctccctttcttttc 121539

>emb|AL359559.1|HSM802656 Homo sapiens mRNA; cDNA DKFZp762O2215 (from clone DKFZp762O2215)
          Length = 1659

 Score = 40.1 bits (20), Expect = 7.4
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 152  atggttgaagaaaagtggaa 171
            ||||||||||||||||||||
Sbjct: 1235 atggttgaagaaaagtggaa 1254


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 4,254,209
Number of Sequences: 3902068
Number of extensions: 4254209
Number of successful extensions: 84529
Number of sequences better than 10.0: 26
Number of HSP's better than 10.0 without gapping: 26
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 84419
Number of HSP's gapped (non-prelim): 110
length of query: 545
length of database: 17,233,045,268
effective HSP length: 23
effective length of query: 522
effective length of database: 17,143,297,704
effective search space: 8948801401488
effective search space used: 8948801401488
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)