ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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| Clone Name | bags8a20 |
|---|---|
| Clone Library Name | barley_pub |
>YP74_CAEEL (Q09221) Hypothetical protein B0228.4| Length = 1633 Score = 133 bits (334), Expect = 4e-31 Identities = 73/183 (39%), Positives = 104/183 (56%), Gaps = 12/183 (6%) Frame = +1 Query: 25 MLSQRHLFRGQLRHRQLPVSGPSWRES--------TPXIVDQYRSLDEVIEALAQAGLES 180 M +R LR P P R S +P + +++LD++++A+ AGLE Sbjct: 1342 MKKERERRSRDLRQNAAPAFKPVRRNSLLQALAIGSPHNIPHFKTLDDIVKAIKHAGLEY 1401 Query: 181 SNLIIGIDFTKSNEWTGKSSFNGMSLHHIGDAP-NPYEQAISIIGQTLSAFDEDNLIPCY 357 SNLI GID+TKSN + G+ +F+ LH I A NPY+Q I I+G+TLS+FD D IP Y Sbjct: 1402 SNLIFGIDYTKSNFYQGERTFDKRPLHTIDPAEMNPYQQVIQIVGKTLSSFDADGQIPAY 1461 Query: 358 GFGDASTHDQDVFAFNPD---ERPCYGFQEALARYREIVPHLRLSGPTSFSPIIEMATTI 528 GFGD D +F E+ C GF+E L Y E+ P + +SGPT+F P+I+ A I Sbjct: 1462 GFGDEEFTDHGIFNIAERYDLEKDCNGFEEVLRVYNEVTPTIEMSGPTNFVPLIDRAIEI 1521 Query: 529 VEQ 537 ++ Sbjct: 1522 CKE 1524
>CPNE1_MOUSE (Q8C166) Copine-1 (Copine I)| Length = 536 Score = 70.9 bits (172), Expect = 2e-12 Identities = 53/153 (34%), Positives = 72/153 (47%), Gaps = 6/153 (3%) Frame = +1 Query: 97 RESTPXIVDQYRSLDEVIEALAQAGLESSNLIIGIDFTKSNEWTGKSSFNGMSLHHIGDA 276 R T + +Y LD V+ G N +G+DFT SN G S + SLH++ Sbjct: 261 RVKTCRVETEYSFLDYVM------GGCQINFTVGVDFTGSN---GDPS-SPDSLHYLSPT 310 Query: 277 P-NPYEQAISIIGQTLSAFDEDNLIPCYGFGDASTHDQDV---FA--FNPDERPCYGFQE 438 N Y A+ +G + +D D L P +GFG D V FA FNP C G Q Sbjct: 311 GVNEYLTALWSVGSVVQDYDSDKLFPAFGFGAQVPPDWQVSHEFALNFNPSNPYCAGIQG 370 Query: 439 ALARYREIVPHLRLSGPTSFSPIIEMATTIVEQ 537 + YR+ +P +RL GPT+F+PII Q Sbjct: 371 IVDAYRQALPQVRLYGPTNFAPIINHVARFAAQ 403
>CPNE1_HUMAN (Q99829) Copine-1 (Copine I)| Length = 537 Score = 70.5 bits (171), Expect = 3e-12 Identities = 46/124 (37%), Positives = 62/124 (50%), Gaps = 6/124 (4%) Frame = +1 Query: 184 NLIIGIDFTKSNEWTGKSSFNGMSLHHIGDAP-NPYEQAISIIGQTLSAFDEDNLIPCYG 360 N +G+DFT SN G S + SLH++ N Y A+ +G + +D D L P +G Sbjct: 285 NFTVGVDFTGSN---GDPS-SPDSLHYLSPTGVNEYLMALWSVGSVVQDYDSDKLFPAFG 340 Query: 361 FGDASTHDQDV---FA--FNPDERPCYGFQEALARYREIVPHLRLSGPTSFSPIIEMATT 525 FG D V FA FNP C G Q + YR+ +P +RL GPT+F+PII Sbjct: 341 FGAQVPPDWQVSHEFALNFNPSNPYCAGIQGIVDAYRQALPQVRLYGPTNFAPIINHVAR 400 Query: 526 IVEQ 537 Q Sbjct: 401 FAAQ 404
>CPNE3_MOUSE (Q8BT60) Copine-3 (Copine III)| Length = 533 Score = 68.6 bits (166), Expect = 1e-11 Identities = 44/115 (38%), Positives = 58/115 (50%), Gaps = 6/115 (5%) Frame = +1 Query: 184 NLIIGIDFTKSNEWTGKSSFNGMSLHHIG-DAPNPYEQAISIIGQTLSAFDEDNLIPCYG 360 N +G+DFT SN G S + SLH+I + N Y AI +G + +D D + P +G Sbjct: 291 NFTVGVDFTGSN---GDPS-SPDSLHYISPNGVNEYLTAIWSVGLVIQDYDADKMFPAFG 346 Query: 361 FGDASTHDQDV-----FAFNPDERPCYGFQEALARYREIVPHLRLSGPTSFSPII 510 FG V FNP C G Q + YR +P +RL GPT+FSPII Sbjct: 347 FGAQVPPQWQVSHEFPMNFNPSNPYCNGIQGIVEAYRTCLPQIRLYGPTNFSPII 401
>CPNE2_MOUSE (P59108) Copine-2 (Copine II)| Length = 548 Score = 67.8 bits (164), Expect = 2e-11 Identities = 44/121 (36%), Positives = 56/121 (46%), Gaps = 6/121 (4%) Frame = +1 Query: 193 IGIDFTKSNEWTGKSSFNGMSLHHIGD-APNPYEQAISIIGQTLSAFDEDNLIPCYGFGD 369 +GIDFT SN + + SLH+I N Y AI +GQ + +D D + P GFG Sbjct: 310 VGIDFTASNG----NPLDPSSLHYINPMGTNEYLSAIWAVGQIIQDYDSDKMFPALGFGA 365 Query: 370 ASTHDQDV---FA--FNPDERPCYGFQEALARYREIVPHLRLSGPTSFSPIIEMATTIVE 534 D V FA FNP C G Y +PH+R GPT+FSPI+ Sbjct: 366 QLPPDWKVSHEFAINFNPTNPFCSGVDGIAQAYSACLPHIRFYGPTNFSPIVNHVARFAA 425 Query: 535 Q 537 Q Sbjct: 426 Q 426
>CPNE2_HUMAN (Q96FN4) Copine-2 (Copine II)| Length = 548 Score = 67.8 bits (164), Expect = 2e-11 Identities = 44/121 (36%), Positives = 56/121 (46%), Gaps = 6/121 (4%) Frame = +1 Query: 193 IGIDFTKSNEWTGKSSFNGMSLHHIGD-APNPYEQAISIIGQTLSAFDEDNLIPCYGFGD 369 +GIDFT SN + + SLH+I N Y AI +GQ + +D D + P GFG Sbjct: 310 VGIDFTASNG----NPLDPSSLHYINPMGTNEYLSAIWAVGQIIQDYDSDKMFPALGFGA 365 Query: 370 ASTHDQDV---FA--FNPDERPCYGFQEALARYREIVPHLRLSGPTSFSPIIEMATTIVE 534 D V FA FNP C G Y +PH+R GPT+FSPI+ Sbjct: 366 QLPPDWKVSHEFAINFNPTNPFCSGVDGIAQAYSACLPHIRFYGPTNFSPIVNHVARFAA 425 Query: 535 Q 537 Q Sbjct: 426 Q 426
>CPNE3_PONPY (Q5RAE1) Copine-3 (Copine III)| Length = 537 Score = 67.4 bits (163), Expect = 2e-11 Identities = 40/115 (34%), Positives = 56/115 (48%), Gaps = 6/115 (5%) Frame = +1 Query: 184 NLIIGIDFTKSNEWTGKSSFNGMSLHHIG-DAPNPYEQAISIIGQTLSAFDEDNLIPCYG 360 N +G+DFT SN+ SLH+I + N Y A+ +G + +D D + P +G Sbjct: 291 NFTVGVDFTGSNDDPRSPD----SLHYISPNGVNEYLTALWSVGLVIQDYDADKMFPAFG 346 Query: 361 FGDASTHDQDV-----FAFNPDERPCYGFQEALARYREIVPHLRLSGPTSFSPII 510 FG V FNP C G Q + YR +P ++L GPT+FSPII Sbjct: 347 FGAQIPPQWQVSHEFPMNFNPSNPYCNGIQGIVEAYRSCLPQIKLYGPTNFSPII 401
>CPNE4_MOUSE (Q8BLR2) Copine-4 (Copine IV)| Length = 557 Score = 66.6 bits (161), Expect = 4e-11 Identities = 41/113 (36%), Positives = 58/113 (51%), Gaps = 6/113 (5%) Frame = +1 Query: 193 IGIDFTKSNEWTGKSSFNGMSLHHIGD-APNPYEQAISIIGQTLSAFDEDNLIPCYGFGD 369 + IDFT SN N SLH+I PN Y +A+ +G+ +D D + P +GFG Sbjct: 310 VAIDFTASNG----DPRNSCSLHYIHPYQPNEYLKALVAVGEICQDYDSDKMFPAFGFGA 365 Query: 370 ASTHDQDV---FA--FNPDERPCYGFQEALARYREIVPHLRLSGPTSFSPIIE 513 + V FA FN D C G Q + Y+ +P L+L GPT+ +PII+ Sbjct: 366 RIPPEYTVSHDFAINFNEDNPECAGIQGVVEAYQSCLPKLQLYGPTNIAPIIQ 418
>CPNE4_HUMAN (Q96A23) Copine-4 (Copine IV) (Copine-8)| Length = 557 Score = 66.6 bits (161), Expect = 4e-11 Identities = 41/113 (36%), Positives = 58/113 (51%), Gaps = 6/113 (5%) Frame = +1 Query: 193 IGIDFTKSNEWTGKSSFNGMSLHHIGD-APNPYEQAISIIGQTLSAFDEDNLIPCYGFGD 369 + IDFT SN N SLH+I PN Y +A+ +G+ +D D + P +GFG Sbjct: 310 VAIDFTASNG----DPRNSCSLHYIHPYQPNEYLKALVAVGEICQDYDSDKMFPAFGFGA 365 Query: 370 ASTHDQDV---FA--FNPDERPCYGFQEALARYREIVPHLRLSGPTSFSPIIE 513 + V FA FN D C G Q + Y+ +P L+L GPT+ +PII+ Sbjct: 366 RIPPEYTVSHDFAINFNEDNPECAGIQGVVEAYQSCLPKLQLYGPTNIAPIIQ 418
>CPNE3_HUMAN (O75131) Copine-3 (Copine III)| Length = 537 Score = 65.9 bits (159), Expect = 7e-11 Identities = 40/115 (34%), Positives = 55/115 (47%), Gaps = 6/115 (5%) Frame = +1 Query: 184 NLIIGIDFTKSNEWTGKSSFNGMSLHHIG-DAPNPYEQAISIIGQTLSAFDEDNLIPCYG 360 N +G+DFT SN SLH+I + N Y A+ +G + +D D + P +G Sbjct: 291 NFTVGVDFTGSNGDPRSPD----SLHYISPNGVNEYLTALWSVGLVIQDYDADKMFPAFG 346 Query: 361 FGDASTHDQDV-----FAFNPDERPCYGFQEALARYREIVPHLRLSGPTSFSPII 510 FG V FNP C G Q + YR +P ++L GPT+FSPII Sbjct: 347 FGAQIPPQWQVSHEFPMNFNPSNPYCNGIQGIVEAYRSCLPQIKLYGPTNFSPII 401
>CPNE7_HUMAN (Q9UBL6) Copine-7 (Copine VII)| Length = 633 Score = 61.6 bits (148), Expect = 1e-09 Identities = 39/118 (33%), Positives = 57/118 (48%), Gaps = 6/118 (5%) Frame = +1 Query: 193 IGIDFTKSNEWTGKSSFNGMSLHHIGD-APNPYEQAISIIGQTLSAFDEDNLIPCYGFGD 369 + IDFT SN N SLH+I PN Y +A+ +G+ +D D GFG Sbjct: 385 VAIDFTASNG----DPRNSCSLHYINPYQPNEYLKALVSVGEICQDYDSDKRFSALGFGA 440 Query: 370 ASTHDQDV---FA--FNPDERPCYGFQEALARYREIVPHLRLSGPTSFSPIIEMATTI 528 +V FA FNP++ C G Q + Y+ +P ++L GPT+ +PII + Sbjct: 441 RIPPKYEVSHDFAINFNPEDDECEGIQGVVEAYQNCLPRVQLYGPTNVAPIISKVARV 498
>CPNE6_PONPY (Q5R4W6) Copine-6 (Copine VI)| Length = 557 Score = 58.5 bits (140), Expect = 1e-08 Identities = 39/112 (34%), Positives = 55/112 (49%), Gaps = 6/112 (5%) Frame = +1 Query: 193 IGIDFTKSNEWTGKSSFNGMSLHHIGDA-PNPYEQAISIIGQTLSAFDEDNLIPCYGFGD 369 + IDFT SN S SLH + PN Y QA+ +G +D D P +GFG Sbjct: 309 VAIDFTASNGDPRSSQ----SLHCLSPRQPNHYLQALRAVGGICQDYDSDKRFPAFGFGA 364 Query: 370 ASTHDQDV---FA--FNPDERPCYGFQEALARYREIVPHLRLSGPTSFSPII 510 + +V FA F+P+ C +A YR +P ++L GPT+ +PII Sbjct: 365 RIPPNFEVSHDFAINFDPENPECEEISGVIASYRRCLPQIQLYGPTNVAPII 416
>CPNE6_MOUSE (Q9Z140) Copine-6 (Copine VI) (Neuronal-copine) (N-copine)| Length = 557 Score = 58.5 bits (140), Expect = 1e-08 Identities = 39/112 (34%), Positives = 55/112 (49%), Gaps = 6/112 (5%) Frame = +1 Query: 193 IGIDFTKSNEWTGKSSFNGMSLHHIGDA-PNPYEQAISIIGQTLSAFDEDNLIPCYGFGD 369 + IDFT SN S SLH + PN Y QA+ +G +D D P +GFG Sbjct: 309 VAIDFTASNGDPRSSQ----SLHCLSPRQPNHYLQALRTVGGICQDYDSDKRFPAFGFGA 364 Query: 370 ASTHDQDV---FA--FNPDERPCYGFQEALARYREIVPHLRLSGPTSFSPII 510 + +V FA F+P+ C +A YR +P ++L GPT+ +PII Sbjct: 365 RIPPNFEVSHDFAINFDPENPECEEISGVIASYRRCLPQIQLYGPTNVAPII 416
>CPNE6_HUMAN (O95741) Copine-6 (Copine VI) (Neuronal-copine) (N-copine)| Length = 557 Score = 58.5 bits (140), Expect = 1e-08 Identities = 39/112 (34%), Positives = 55/112 (49%), Gaps = 6/112 (5%) Frame = +1 Query: 193 IGIDFTKSNEWTGKSSFNGMSLHHIGDA-PNPYEQAISIIGQTLSAFDEDNLIPCYGFGD 369 + IDFT SN S SLH + PN Y QA+ +G +D D P +GFG Sbjct: 309 VAIDFTASNGDPRSSQ----SLHCLSPRQPNHYLQALRAVGGICQDYDSDKRFPAFGFGA 364 Query: 370 ASTHDQDV---FA--FNPDERPCYGFQEALARYREIVPHLRLSGPTSFSPII 510 + +V FA F+P+ C +A YR +P ++L GPT+ +PII Sbjct: 365 RIPPNFEVSHDFAINFDPENPECEEISGVIASYRRCLPQIQLYGPTNVAPII 416
>CPNE5_MOUSE (Q8JZW4) Copine-5 (Copine V)| Length = 593 Score = 55.1 bits (131), Expect = 1e-07 Identities = 33/115 (28%), Positives = 54/115 (46%), Gaps = 6/115 (5%) Frame = +1 Query: 184 NLIIGIDFTKSNEWTGKSSFNGMSLHHIGDAP-NPYEQAISIIGQTLSAFDEDNLIPCYG 360 N + IDFT SN +S+ SLH++ N Y A++ +G+ + +D D + P G Sbjct: 328 NFTVAIDFTASNGNPSQST----SLHYMSPYQLNAYALALTAVGEIIQHYDSDKMFPALG 383 Query: 361 FG-----DASTHDQDVFAFNPDERPCYGFQEALARYREIVPHLRLSGPTSFSPII 510 FG D + N + C G L Y + ++L GPT+F+P++ Sbjct: 384 FGAKLPPDGRVSHEFPLNGNQENPSCCGIDGILEAYHSSLRTVQLYGPTNFAPVV 438
>CPNE5_HUMAN (Q9HCH3) Copine-5 (Copine V)| Length = 593 Score = 55.1 bits (131), Expect = 1e-07 Identities = 33/115 (28%), Positives = 54/115 (46%), Gaps = 6/115 (5%) Frame = +1 Query: 184 NLIIGIDFTKSNEWTGKSSFNGMSLHHIGDAP-NPYEQAISIIGQTLSAFDEDNLIPCYG 360 N + IDFT SN +S+ SLH++ N Y A++ +G+ + +D D + P G Sbjct: 328 NFTVAIDFTASNGNPSQST----SLHYMSPYQLNAYALALTAVGEIIQHYDSDKMFPALG 383 Query: 361 FG-----DASTHDQDVFAFNPDERPCYGFQEALARYREIVPHLRLSGPTSFSPII 510 FG D + N + C G L Y + ++L GPT+F+P++ Sbjct: 384 FGAKLPPDGRVSHEFPLNGNQENPSCCGIDGILEAYHRSLRTVQLYGPTNFAPVV 438
>CPNE8_MOUSE (Q9DC53) Copine-8 (Copine VIII)| Length = 564 Score = 55.1 bits (131), Expect = 1e-07 Identities = 35/115 (30%), Positives = 55/115 (47%), Gaps = 6/115 (5%) Frame = +1 Query: 184 NLIIGIDFTKSNEWTGKSSFNGMSLHHIGDAP-NPYEQAISIIGQTLSAFDEDNLIPCYG 360 N + IDFT SN + + SLH++ N Y A+ +G+ + +D D + P G Sbjct: 309 NFTVAIDFTASNGNPAQPT----SLHYMNPYQLNAYGMALKAVGEIVQDYDSDKMFPALG 364 Query: 361 FGDASTHDQDV---FAFN--PDERPCYGFQEALARYREIVPHLRLSGPTSFSPII 510 FG D + FA N P C G + + Y + ++L GPT+F+P+I Sbjct: 365 FGAKLPPDGRISHEFALNGNPQNPYCDGIEGVMEAYYRSLKSVQLYGPTNFAPVI 419
>CPNE8_HUMAN (Q86YQ8) Copine-8 (Copine VIII)| Length = 564 Score = 55.1 bits (131), Expect = 1e-07 Identities = 35/115 (30%), Positives = 55/115 (47%), Gaps = 6/115 (5%) Frame = +1 Query: 184 NLIIGIDFTKSNEWTGKSSFNGMSLHHIGDAP-NPYEQAISIIGQTLSAFDEDNLIPCYG 360 N + IDFT SN + + SLH++ N Y A+ +G+ + +D D + P G Sbjct: 309 NFTVAIDFTASNGNPAQPT----SLHYMNPYQLNAYGMALKAVGEIVQDYDSDKMFPALG 364 Query: 361 FGDASTHDQDV---FAFN--PDERPCYGFQEALARYREIVPHLRLSGPTSFSPII 510 FG D + FA N P C G + + Y + ++L GPT+F+P+I Sbjct: 365 FGAKLPPDGRISHEFALNGNPQNPYCDGIEGVMEAYYRSLKSVQLYGPTNFAPVI 419
>YGJI_CAEEL (Q9XUB9) Hypothetical protein T28F3.1 in chromosome IV| Length = 634 Score = 49.7 bits (117), Expect = 5e-06 Identities = 34/113 (30%), Positives = 51/113 (45%), Gaps = 6/113 (5%) Frame = +1 Query: 193 IGIDFTKSNEWTGKSSFNGMSLHHIG-DAPNPYEQAISIIGQTLSAFDEDNLIPCYGFGD 369 + +DFT SN SS SLH + D PN YE A+ + ++ +GFG Sbjct: 341 VAVDFTASNGPPKSSS----SLHFMSADRPNQYELALRSVLSICQHYNSSKTFEAFGFGA 396 Query: 370 ASTHDQDVFAFNPDE-----RPCYGFQEALARYREIVPHLRLSGPTSFSPIIE 513 + V A P + G + YR + +++L GPT+F+PIIE Sbjct: 397 KLPNQSSVSAIFPLDLQRGTSEVVGITGVMTAYRHALSNVQLYGPTNFAPIIE 449
>ENO_MASBA (Q9U615) Enolase (EC 4.2.1.11) (2-phosphoglycerate dehydratase)| (2-phospho-D-glycerate hydro-lyase) Length = 439 Score = 29.6 bits (65), Expect = 5.6 Identities = 15/44 (34%), Positives = 24/44 (54%) Frame = +1 Query: 109 PXIVDQYRSLDEVIEALAQAGLESSNLIIGIDFTKSNEWTGKSS 240 P I + L+ ++EA+ QAG + + IG+D S+ W K S Sbjct: 214 PNIQANHEGLELIVEAIKQAGY-TGKIEIGMDVAASSFWDAKES 256
>NT3_RAT (P18280) Neurotrophin-3 precursor (NT-3) (Neurotrophic factor)| (HDNF) (Nerve growth factor 2) (NGF-2) Length = 258 Score = 29.6 bits (65), Expect = 5.6 Identities = 16/61 (26%), Positives = 34/61 (55%), Gaps = 2/61 (3%) Frame = -2 Query: 534 LNNGCGHFN--YWRK*CRTGKTKMRNNFSISSQSLLKPIAWSFVRIEGKYILVMCRCISK 361 + NGC + +W C+T +T +R +++S++ K + W ++RI+ + + R I + Sbjct: 202 VKNGCRGIDDKHWNSQCKTSQTYVR---ALTSENN-KLVGWRWIRIDTSCVCALSRKIGR 257 Query: 360 T 358 T Sbjct: 258 T 258
>NT3_MOUSE (P20181) Neurotrophin-3 precursor (NT-3) (Neurotrophic factor)| (HDNF) (Nerve growth factor 2) (NGF-2) Length = 258 Score = 29.6 bits (65), Expect = 5.6 Identities = 16/61 (26%), Positives = 34/61 (55%), Gaps = 2/61 (3%) Frame = -2 Query: 534 LNNGCGHFN--YWRK*CRTGKTKMRNNFSISSQSLLKPIAWSFVRIEGKYILVMCRCISK 361 + NGC + +W C+T +T +R +++S++ K + W ++RI+ + + R I + Sbjct: 202 VKNGCRGIDDKHWNSQCKTSQTYVR---ALTSENN-KLVGWRWIRIDTSCVCALSRKIGR 257 Query: 360 T 358 T Sbjct: 258 T 258
>NT3_HUMAN (P20783) Neurotrophin-3 precursor (NT-3) (Neurotrophic factor)| (HDNF) (Nerve growth factor 2) (NGF-2) Length = 257 Score = 29.6 bits (65), Expect = 5.6 Identities = 16/61 (26%), Positives = 34/61 (55%), Gaps = 2/61 (3%) Frame = -2 Query: 534 LNNGCGHFN--YWRK*CRTGKTKMRNNFSISSQSLLKPIAWSFVRIEGKYILVMCRCISK 361 + NGC + +W C+T +T +R +++S++ K + W ++RI+ + + R I + Sbjct: 201 VKNGCRGIDDKHWNSQCKTSQTYVR---ALTSENN-KLVGWRWIRIDTSCVCALSRKIGR 256 Query: 360 T 358 T Sbjct: 257 T 257
>NT3_FELCA (Q9TST2) Neurotrophin-3 precursor (NT-3) (Neurotrophic factor)| (HDNF) (Nerve growth factor 2) (NGF-2) Length = 257 Score = 29.6 bits (65), Expect = 5.6 Identities = 16/61 (26%), Positives = 34/61 (55%), Gaps = 2/61 (3%) Frame = -2 Query: 534 LNNGCGHFN--YWRK*CRTGKTKMRNNFSISSQSLLKPIAWSFVRIEGKYILVMCRCISK 361 + NGC + +W C+T +T +R +++S++ K + W ++RI+ + + R I + Sbjct: 201 VKNGCRGIDDKHWNSQCKTSQTYVR---ALTSENN-KLVGWRWIRIDTSCVCALSRKIGR 256 Query: 360 T 358 T Sbjct: 257 T 257
>NT3_CHICK (P25433) Neurotrophin-3 precursor (NT-3) (Neurotrophic factor)| (HDNF) (Nerve growth factor 2) (NGF-2) Length = 257 Score = 29.6 bits (65), Expect = 5.6 Identities = 16/61 (26%), Positives = 34/61 (55%), Gaps = 2/61 (3%) Frame = -2 Query: 534 LNNGCGHFN--YWRK*CRTGKTKMRNNFSISSQSLLKPIAWSFVRIEGKYILVMCRCISK 361 + NGC + +W C+T +T +R +++S++ K + W ++RI+ + + R I + Sbjct: 201 VKNGCRGIDDKHWNSQCKTSQTYVR---ALTSENN-KLVGWRWIRIDTSCVCALSRKIGR 256 Query: 360 T 358 T Sbjct: 257 T 257
>MURC_PROMP (Q7V3P8) UDP-N-acetylmuramate--L-alanine ligase (EC 6.3.2.8)| (UDP-N-acetylmuramoyl-L-alanine synthetase) Length = 473 Score = 29.3 bits (64), Expect = 7.3 Identities = 15/49 (30%), Positives = 23/49 (46%), Gaps = 7/49 (14%) Frame = +1 Query: 121 DQYRSLDEVIEALAQAGLESSNLIIGID-------FTKSNEWTGKSSFN 246 D Y ++DEV+ + + L+I D FT N+W+ K S N Sbjct: 198 DHYSNIDEVLSSFKKFASNCQKLLINYDCKFTKNNFTSKNQWSIKESNN 246
>DGOA_ECOLI (Q6BF16) 2-dehydro-3-deoxy-6-phosphogalactonate aldolase (EC| 4.1.2.21) (6-phospho-2-dehydro-3-deoxygalactonate aldolase) (2-oxo-3-deoxygalactonate 6-phosphate aldolase) Length = 205 Score = 29.3 bits (64), Expect = 7.3 Identities = 14/46 (30%), Positives = 23/46 (50%), Gaps = 10/46 (21%) Frame = +1 Query: 70 QLPVSGPSWRESTPXIVDQYRS----------LDEVIEALAQAGLE 177 ++P++ P W +S P IVD Y E ++ALA+ G + Sbjct: 37 EIPLNSPQWEQSIPAIVDAYGDKALIGAGTVLKPEQVDALARMGCQ 82
>UNG_COREF (Q8FPQ4) Uracil-DNA glycosylase (EC 3.2.2.-) (UDG)| Length = 238 Score = 28.9 bits (63), Expect = 9.5 Identities = 14/33 (42%), Positives = 20/33 (60%) Frame = +1 Query: 73 LPVSGPSWRESTPXIVDQYRSLDEVIEALAQAG 171 LP+ PSWR+ ++DQ R L + + A QAG Sbjct: 21 LPIH-PSWRKVLEPVMDQIRDLGQFLTAETQAG 52
>Y2664_MYCBO (P59975) UPF0027 protein Mb2664| Length = 432 Score = 28.9 bits (63), Expect = 9.5 Identities = 17/42 (40%), Positives = 22/42 (52%) Frame = +1 Query: 49 RGQLRHRQLPVSGPSWRESTPXIVDQYRSLDEVIEALAQAGL 174 R L R + V G S R + Y+ +DEVIEA Q+GL Sbjct: 376 RASLAKRGIIVRGTSRRGIAEEKPEAYKDVDEVIEASHQSGL 417
>Y2631_MYCTU (P71930) UPF0027 protein Rv2631/MT2707| Length = 432 Score = 28.9 bits (63), Expect = 9.5 Identities = 17/42 (40%), Positives = 22/42 (52%) Frame = +1 Query: 49 RGQLRHRQLPVSGPSWRESTPXIVDQYRSLDEVIEALAQAGL 174 R L R + V G S R + Y+ +DEVIEA Q+GL Sbjct: 376 RASLAKRGIIVRGTSRRGIAEEKPEAYKDVDEVIEASHQSGL 417 Database: uniprot_sprot.fasta Posted date: May 25, 2006 5:36 PM Number of letters in database: 80,573,946 Number of sequences in database: 219,361 Lambda K H 0.318 0.135 0.401 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 78,337,722 Number of Sequences: 219361 Number of extensions: 1605695 Number of successful extensions: 4077 Number of sequences better than 10.0: 30 Number of HSP's better than 10.0 without gapping: 3977 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 4051 length of database: 80,573,946 effective HSP length: 105 effective length of database: 57,541,041 effective search space used: 4200495993 frameshift window, decay const: 50, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits)
