ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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| Clone Name | bags8a18 |
|---|---|
| Clone Library Name | barley_pub |
>NU2M_STRCA (O21398) NADH-ubiquinone oxidoreductase chain 2 (EC 1.6.5.3) (NADH| dehydrogenase subunit 2) Length = 346 Score = 34.3 bits (77), Expect = 0.28 Identities = 28/102 (27%), Positives = 42/102 (41%), Gaps = 6/102 (5%) Frame = +3 Query: 147 ISALLGNSINTDASYGTSIWSALEDPAKYFITFMAFSEMAAVIAPSVSPYFPQALRGAFV 326 IS LLG +I +++ W+ LE I ++ S + SV + QA A V Sbjct: 11 ISLLLGTTITISSNHWIMAWTGLEINTLAIIPLISKSHHPRAVEASVKYFLVQAAASALV 70 Query: 327 L----SVVWFLHRWKANFITKAMANQ--TALVTDKARLSAFN 434 L S W +W +T A+ TA + K L F+ Sbjct: 71 LFSSMSNAWATGQWDITQLTHPTASMLLTAAIAIKLGLVPFH 112
>YCXC_BACSU (Q08794) Hypothetical transport protein ycxC| Length = 312 Score = 33.5 bits (75), Expect = 0.48 Identities = 23/85 (27%), Positives = 43/85 (50%) Frame = +3 Query: 234 FITFMAFSEMAAVIAPSVSPYFPQALRGAFVLSVVWFLHRWKANFITKAMANQTALVTDK 413 F+ F A + + A +V YF FVL++V+ ++ +T ++N T + Sbjct: 194 FVVFNAIALVRHGAAGTVGTYFLPFREPGFVLAIVYL--GVLSSLVTSFLSNYTLSRIEA 251 Query: 414 ARLSAFNQVSSLGLIALGVMGLAEA 488 ++SAFN VS++ + G + L E+ Sbjct: 252 FKMSAFNHVSTIVTMIAGFVILNES 276
>MYLK2_RABIT (P07313) Myosin light chain kinase 2, skeletal/cardiac muscle (EC| 2.7.11.18) (MLCK2) Length = 607 Score = 31.2 bits (69), Expect = 2.4 Identities = 29/118 (24%), Positives = 49/118 (41%), Gaps = 14/118 (11%) Frame = +3 Query: 159 LGNSINTDASYGTSIWSALEDPAKYFITFMAFSEMAAVIAPSVSPYFP------------ 302 L N ++ + + + A+ D AK F++ + E A ++ + P Sbjct: 502 LNNVLSGNWYFDEETFEAVSDEAKDFVSNLIVKEQGARMSAAQCLAHPWLNNLAEKAKRC 561 Query: 303 -QALRGAFVLSVVWFLHRWKANFITKAMANQTALVTDKARLSAFNQVSSLG-LIALGV 470 + L+ +L RWK NFI + AN+ F ++SS G L+ALGV Sbjct: 562 NRRLKSQILLKKYLMKRRWKKNFIAVSAANR------------FKKISSSGALMALGV 607
>MYLK2_RAT (P20689) Myosin light chain kinase 2, skeletal/cardiac muscle (EC| 2.7.11.18) (MLCK2) Length = 609 Score = 30.4 bits (67), Expect = 4.0 Identities = 28/118 (23%), Positives = 49/118 (41%), Gaps = 14/118 (11%) Frame = +3 Query: 159 LGNSINTDASYGTSIWSALEDPAKYFITFMAFSEMAAVIAPSVSPYFP------------ 302 L N ++ + + + A+ D AK F++ + + +A ++ P Sbjct: 504 LNNVLSANWYFDEETFEAVSDEAKDFVSNLITKDQSARMSAEQCLAHPWLNNLAEKAKRC 563 Query: 303 -QALRGAFVLSVVWFLHRWKANFITKAMANQTALVTDKARLSAFNQVSSLG-LIALGV 470 + L+ +L RWK NFI + AN+ F ++SS G L+ALGV Sbjct: 564 NRRLKSQILLKKYLMKRRWKKNFIAVSAANR------------FKKISSSGALMALGV 609
>MYLK2_MOUSE (Q8VCR8) Myosin light chain kinase 2, skeletal/cardiac muscle (EC| 2.7.11.18) (MLCK2) (Fragment) Length = 240 Score = 30.4 bits (67), Expect = 4.0 Identities = 28/118 (23%), Positives = 49/118 (41%), Gaps = 14/118 (11%) Frame = +3 Query: 159 LGNSINTDASYGTSIWSALEDPAKYFITFMAFSEMAAVIAPSVSPYFP------------ 302 L N ++ + + + A+ D AK F++ + + +A ++ P Sbjct: 135 LNNVLSANWYFDEETFEAVSDEAKDFVSNLLTKDQSARMSAEQCLAHPWLNNLAEKAKRC 194 Query: 303 -QALRGAFVLSVVWFLHRWKANFITKAMANQTALVTDKARLSAFNQVSSLG-LIALGV 470 + L+ +L RWK NFI + AN+ F ++SS G L+ALGV Sbjct: 195 NRRLKSQILLKKYLMKRRWKKNFIAVSAANR------------FKKISSSGALMALGV 240
>ILVD_MYCLE (O06069) Dihydroxy-acid dehydratase (EC 4.2.1.9) (DAD)| Length = 564 Score = 30.4 bits (67), Expect = 4.0 Identities = 19/50 (38%), Positives = 27/50 (54%), Gaps = 2/50 (4%) Frame = -2 Query: 274 ITAAISENAINVMKYFAGSSNALQML--VPYEASVLIEFPKSADIGFWDP 131 +T ENAI V+ F GS+NA+ L + +EA V + + IGF P Sbjct: 261 LTKEAFENAIAVVMAFGGSTNAILHLLAIAHEADVTLSLEDFSRIGFKVP 310
>ARGO_YERPS (Q666Q4) Arginine exporter protein argO| Length = 205 Score = 30.4 bits (67), Expect = 4.0 Identities = 16/63 (25%), Positives = 29/63 (46%), Gaps = 5/63 (7%) Frame = +3 Query: 219 DPAKYFITFMAFSEMAAVIAPSVSPYFPQALRGAFVLSVVWF-----LHRWKANFITKAM 383 +P Y TF+ + + P + P+F GA S+VWF L W + ++ + + Sbjct: 122 NPHVYLDTFVVLGSLGGQLLPDIRPWF---ALGAVTASIVWFFALALLAAWLSPWLNRPV 178 Query: 384 ANQ 392 A + Sbjct: 179 AQR 181
>ARGO_YERPE (Q8ZHH6) Arginine exporter protein argO| Length = 205 Score = 30.4 bits (67), Expect = 4.0 Identities = 16/63 (25%), Positives = 29/63 (46%), Gaps = 5/63 (7%) Frame = +3 Query: 219 DPAKYFITFMAFSEMAAVIAPSVSPYFPQALRGAFVLSVVWF-----LHRWKANFITKAM 383 +P Y TF+ + + P + P+F GA S+VWF L W + ++ + + Sbjct: 122 NPHVYLDTFVVLGSLGGQLLPDIRPWF---ALGAVTASIVWFFALALLAAWLSPWLNRPV 178 Query: 384 ANQ 392 A + Sbjct: 179 AQR 181
>RAB31_HUMAN (Q13636) Ras-related protein Rab-31 (Rab-22B)| Length = 194 Score = 29.6 bits (65), Expect = 6.9 Identities = 17/51 (33%), Positives = 27/51 (52%), Gaps = 1/51 (1%) Frame = -2 Query: 334 TDSTNAPLNACGK*GDTLGAITAAIS-ENAINVMKYFAGSSNALQMLVPYE 185 +D PL + +++GAI S +NAIN+ + F G S + L P+E Sbjct: 123 SDIREVPLKDAKEYAESIGAIVVETSAKNAINIEELFQGISRQIPPLDPHE 173
>RPOA_LDVC (Q06502) Replicase polyprotein 1ab (ORF1ab polyprotein) [Includes:| Replicase polyprotein 1a (ORF1a)] [Contains: Nsp1-alpha papain-like cysteine proteinase (EC 3.4.22.-) (PCP1-alpha); Nsp1-beta papain-like cysteine proteinase (EC 3.4.22.-) (PCP1 Length = 3637 Score = 29.3 bits (64), Expect = 9.0 Identities = 16/40 (40%), Positives = 24/40 (60%) Frame = -2 Query: 490 QASARPITPSAISPNDETWLKADNLALSVTKAVWLAIALV 371 QAS+RP +P+++SP L A L LS T++ A+ V Sbjct: 580 QASSRPSSPASVSPASSVDLSAAGLLLSGTESDKEAVVAV 619 Database: uniprot_sprot.fasta Posted date: May 25, 2006 5:36 PM Number of letters in database: 80,573,946 Number of sequences in database: 219,361 Lambda K H 0.318 0.135 0.401 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 81,964,996 Number of Sequences: 219361 Number of extensions: 1676486 Number of successful extensions: 4387 Number of sequences better than 10.0: 10 Number of HSP's better than 10.0 without gapping: 4267 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 4387 length of database: 80,573,946 effective HSP length: 107 effective length of database: 57,102,319 effective search space used: 5196311029 frameshift window, decay const: 50, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits)
