>PABPB_XENLA (Q6IP09) Polyadenylate-binding protein 1-B (Poly(A)-binding protein|
           1-B) (Cytoplasmic poly(A)-binding protein 1-B) (PABP-B)
           (PABP 1-B) (xPABP1-B)
          Length = 633

 Score = 33.9 bits (76), Expect = 0.38
 Identities = 18/52 (34%), Positives = 22/52 (42%)
 Frame = +3

Query: 129 PIPEDFFQNTVPSQQLANRLPPPGAILQRMANPDSGMNVGRPVPNQNMTGNV 284
           P P  +F   +P  Q      PPG I Q   +P       RP P QNM G +
Sbjct: 401 PPPSSYFMAAIPPAQNRAAYYPPGQIAQLRPSPRWTAQGARPHPFQNMAGAI 452

>PABPA_XENLA (P20965) Polyadenylate-binding protein 1-A (Poly(A)-binding protein|
           1-A) (Cytoplasmic poly(A)-binding protein 1-A) (PABP-A)
           (PABP 1-A) (xPABP1-A)
          Length = 633

 Score = 33.5 bits (75), Expect = 0.49
 Identities = 18/52 (34%), Positives = 22/52 (42%)
 Frame = +3

Query: 129 PIPEDFFQNTVPSQQLANRLPPPGAILQRMANPDSGMNVGRPVPNQNMTGNV 284
           P P  +F   +P  Q      PPG I Q   +P       RP P QNM G +
Sbjct: 401 PPPSSYFMAAIPPAQNRAAYYPPGQIAQLRPSPRWTAQGARPHPFQNMPGAI 452

>BRO1_GIBZE (Q4IBS9) Vacuolar protein-sorting protein BRO1 (BRO|
           domain-containing protein 1)
          Length = 995

 Score = 30.8 bits (68), Expect = 3.2
 Identities = 26/75 (34%), Positives = 37/75 (49%), Gaps = 10/75 (13%)
 Frame = +1

Query: 412 PHRARLFLHSHRASNLLFLLRR--NQLISVLSRVQEQQSKLLSPQRLKPCVLARYPVALL 585
           PH+ RL   +H+ S L+  L    N+L+    RVQ +QSK  + QR +  V+ RY  A  
Sbjct: 653 PHQNRLLQANHKQSALMKELTSAFNRLLQD-KRVQSEQSKYETIQRQRSSVINRYKRAYQ 711

Query: 586 --------LQNATGW 606
                   LQ+A  W
Sbjct: 712 EFLDLVAGLQSAKNW 726

>PABP1_RAT (Q9EPH8) Polyadenylate-binding protein 1 (Poly(A)-binding protein|
           1) (PABP 1)
          Length = 636

 Score = 29.6 bits (65), Expect = 7.1
 Identities = 16/50 (32%), Positives = 20/50 (40%)
 Frame = +3

Query: 135 PEDFFQNTVPSQQLANRLPPPGAILQRMANPDSGMNVGRPVPNQNMTGNV 284
           P  +F   +P  Q      PP  I Q   +P       RP P QNM G +
Sbjct: 405 PSGYFMAAIPQTQNRAAYYPPSQIAQLRPSPRWTAQGARPHPFQNMPGAI 454

>PABP1_MOUSE (P29341) Polyadenylate-binding protein 1 (Poly(A)-binding protein|
           1) (PABP 1)
          Length = 636

 Score = 29.6 bits (65), Expect = 7.1
 Identities = 16/50 (32%), Positives = 20/50 (40%)
 Frame = +3

Query: 135 PEDFFQNTVPSQQLANRLPPPGAILQRMANPDSGMNVGRPVPNQNMTGNV 284
           P  +F   +P  Q      PP  I Q   +P       RP P QNM G +
Sbjct: 405 PSGYFMAAIPQTQNRAAYYPPSQIAQLRPSPRWTAQGARPHPFQNMPGAI 454

>PABP1_HUMAN (P11940) Polyadenylate-binding protein 1 (Poly(A)-binding protein|
           1) (PABP 1)
          Length = 636

 Score = 29.6 bits (65), Expect = 7.1
 Identities = 16/50 (32%), Positives = 20/50 (40%)
 Frame = +3

Query: 135 PEDFFQNTVPSQQLANRLPPPGAILQRMANPDSGMNVGRPVPNQNMTGNV 284
           P  +F   +P  Q      PP  I Q   +P       RP P QNM G +
Sbjct: 405 PSGYFMAAIPQTQNRAAYYPPSQIAQLRPSPRWTAQGARPHPFQNMPGAI 454

>PABP1_BOVIN (P61286) Polyadenylate-binding protein 1 (Poly(A)-binding protein|
           1) (PABP 1)
          Length = 636

 Score = 29.6 bits (65), Expect = 7.1
 Identities = 16/50 (32%), Positives = 20/50 (40%)
 Frame = +3

Query: 135 PEDFFQNTVPSQQLANRLPPPGAILQRMANPDSGMNVGRPVPNQNMTGNV 284
           P  +F   +P  Q      PP  I Q   +P       RP P QNM G +
Sbjct: 405 PSGYFMAAIPQTQNRAAYYPPSQIAQLRPSPRWTAQGARPHPFQNMPGAI 454

>GUX1_PENJA (Q06886) Exoglucanase 1 precursor (EC 3.2.1.91) (Exoglucanase I)|
           (Exocellobiohydrolase I) (1,4-beta-cellobiohydrolase)
          Length = 537

 Score = 29.3 bits (64), Expect = 9.3
 Identities = 24/104 (23%), Positives = 39/104 (37%), Gaps = 21/104 (20%)
 Frame = +2

Query: 65  TTTSAGRRHGSCN--RRPGSDSWTYSR-------------------GLLPEHRSITATCE 181
           T+T+ G + G+C+  RRP +   TY                     G      + T T +
Sbjct: 416 TSTTPGAKRGTCDISRRPNTVESTYPNAYVIYSNIKTGPLNSTFTGGTTSSSSTTTTTSK 475

Query: 182 STASSRSNSAKNGQS*LWDERWQTGT*PKHDGQCWSSRWWGAAT 313
           ST++S S+      +        +GT  +   QC  + W G  T
Sbjct: 476 STSTSSSSKTTTTVTTTTTSSGSSGTGARDWAQCGGNGWTGPTT 519


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.318    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 85,305,502
Number of Sequences: 219361
Number of extensions: 1653464
Number of successful extensions: 5285
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 5017
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 5279
length of database: 80,573,946
effective HSP length: 107
effective length of database: 57,102,319
effective search space used: 5367617986
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)